Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c7/cece951fc75f7526dda2fbbc39d89c/659_bua-T1-TRNA-1_A23MVY2LT4_1.Aligned.sortedByCoord.out.bam.bai
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1a/f73a0e22861201cc7c5cccf07ed1b4/ref_annot.bed
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f7/a279cbda1cd00c01e572aac9f6c237/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f7/a279cbda1cd00c01e572aac9f6c237/.command.run
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/26/184fb834bc8193db29cca1fd0a720b/659_bua-T1-TRNA-1_A23MVY2LT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)
processing ref_annot.bed ... Done
[W::hts_idx_load3] The index file is older than the data file: 659_bua-T1-TRNA-1_A23MVY2LT4_1.Aligned.sortedByCoord.out.bam.bai
processing 659_bua-T1-TRNA-1_A23MVY2LT4_1.Aligned.sortedByCoord.out.bam ... Finished