Done.
-parsing GTF file: /tmp/nxf.zto05XNcdp/659_bGW-T1-TRNA-1_A23MVY2LT4_1.gtf
* Running CMD: /usr/local/bin/STAR  --runThreadN 8  --genomeDir /tmp/nxf.zto05XNcdp/ctat_genome_lib_build_dir/ref_genome.fa.star.idx  --outSAMtype BAM SortedByCoordinate  --twopassMode None  --alignSJDBoverhangMin 10  --genomeSuffixLengthMax 10000 --limitBAMsortRAM 47271261705  --alignInsertionFlush Right   --alignMatesGapMax 100000  --alignIntronMax 100000  --outSAMattributes All  --readFilesIn /tmp/nxf.zto05XNcdp/659_bGW-T1-TRNA-1_A23MVY2LT4_1_1.fastp.fastq.gz /tmp/nxf.zto05XNcdp/659_bGW-T1-TRNA-1_A23MVY2LT4_1_2.fastp.fastq.gz  --genomeFastaFiles /tmp/nxf.zto05XNcdp/fi_workdir/659_bGW-T1-TRNA-1_A23MVY2LT4_1.fa  --outSAMfilter KeepAllAddedReferences  --sjdbGTFfile /tmp/nxf.zto05XNcdp/fi_workdir/659_bGW-T1-TRNA-1_A23MVY2LT4_1.gtf  --alignSJstitchMismatchNmax 5 -1 5 5  --scoreGapNoncan -6  --readFilesCommand 'gunzip -c' 
* Running CMD: mv Aligned.sortedByCoord.out.bam 659_bGW-T1-TRNA-1_A23MVY2LT4_1.star.sortedByCoord.out.bam
* Running CMD: samtools index 659_bGW-T1-TRNA-1_A23MVY2LT4_1.star.sortedByCoord.out.bam
12:13:28 : INFO : Done.
-parsing GTF file: /tmp/nxf.zto05XNcdp/fi_workdir/659_bGW-T1-TRNA-1_A23MVY2LT4_1.gtf
-parsing /tmp/nxf.zto05XNcdp/fi_workdir/659_bGW-T1-TRNA-1_A23MVY2LT4_1.star.cSorted.dupsMarked.bam

[10000]   
[20000]   
[30000]   
[40000]   
[50000]   
[60000]   
[70000]   
[80000]   
[90000]   
[100000]   
[110000]   
[120000]   
[130000]   
[140000]   
[150000]   
[160000]   
[170000]   
[180000]   
[190000]   
[200000]   
[210000]   
[220000]   
[230000]   
[240000]   
[250000]   
[260000]   
[270000]   
[280000]   
[290000]   
[300000]   
[310000]   
[320000]   
[330000]   
[340000]   
[350000]   
[360000]   
[370000]   
[380000]   
[390000]   
[400000]   
[410000]   
[420000]   
[430000]   
[440000]   
[450000]   
[460000]   
[470000]   
[480000]   
[490000]   
[500000]   
[510000]   
[520000]   
[530000]   
[540000]   
[550000]   
[560000]   
[570000]   
[580000]   
[590000]   
[600000]   
[610000]   
[620000]   
[630000]   
[640000]   
[650000]   
[660000]   
[670000]   
[680000]   
[690000]   
[700000]   
[710000]   
[720000]   
[730000]   
[740000]   
[750000]   
[760000]   
[770000]   
[780000]   
[790000]   
[800000]   
[810000]   
[820000]   
[830000]   
[840000]   
[850000]   
[860000]   
[870000]   
[880000]   
[890000]   
[900000]   
[910000]   
[920000]   
[930000]   
[940000]   
[950000]   
[960000]   
[970000]   
[980000]   
[990000]   
[1000000]   
[1010000]   
[1020000]   
[1030000]   
[1040000]   
[1050000]   
[1060000]   
[1070000]   
[1080000]   
[1090000]   
[1100000]   
[1110000]   
[1120000]   
[1130000]   
[1140000]   
[1150000]   
[1160000]   
[1170000]   
[1180000]   
[1190000]   
[1200000]   
[1210000]   
[1220000]   
[1230000]   
[1240000]   
[1250000]   
[1260000]   
[1270000]   
[1280000]   
[1290000]   
[1300000]   
[1310000]   
[1320000]   
[1330000]   
[1340000]   
[1350000]   
[1360000]   
[1370000]   
[1380000]   
[1390000]   
[1400000]   
[1410000]   
[1420000]   
[1430000]   
[1440000]   
[1450000]   
[1460000]   
[1470000]   
[1480000]   
[1490000]   
[1500000]   
[1510000]   
[1520000]   
[1530000]   
[1540000]   
[1550000]   
[1560000]   
[1570000]   
[1580000]   
[1590000]   
[1600000]   
[1610000]   
[1620000]   
[1630000]   
[1640000]   
[1650000]   
[1660000]   
[1670000]   
[1680000]   
[1690000]   
[1700000]   
[1710000]   
[1720000]   
[1730000]   
[1740000]   
[1750000]   
[1760000]   
[1770000]   
[1780000]   
[1790000]   
[1800000]   
[1810000]   
[1820000]   
[1830000]   
[1840000]   
[1850000]   
[1860000]   
[1870000]   
[1880000]   
[1890000]   
[1900000]   
[1910000]   
[1920000]   
[1930000]   
[1940000]   
[1950000]   
[1960000]   
[1970000]   
[1980000]   
[1990000]   
[2000000]   
[2010000]   
[2020000]   
[2030000]   
[2040000]   
[2050000]   
[2060000]   
[2070000]   
[2080000]   
[2090000]   
[2100000]   
[2110000]   
[2120000]   -done parsing /tmp/nxf.zto05XNcdp/fi_workdir/659_bGW-T1-TRNA-1_A23MVY2LT4_1.star.cSorted.dupsMarked.bam.  Extracting junction info.
junction read elimination tally: $VAR1 = {
          'num genes matched < 2' => 166,
          'low complexity anchor region' => 7,
          ' ** passed ** ' => 4642,
          'exons hit < 2' => 106,
          'seq-similar region overlap' => 45,
          'num_hits: 3 != num_counted_on_fusion_contigs 2 ' => 24,
          'per_id < 96' => 9950,
          'num_hits: 6 != num_counted_on_fusion_contigs 2 ' => 8,
          'num_hits: 4 != num_counted_on_fusion_contigs 2 ' => 238,
          'num_hits: 3 != num_counted_on_fusion_contigs 1 ' => 20,
          'small anchor length' => 3,
          'num_hits: 2 != num_counted_on_fusion_contigs 1 ' => 229,
          'excessive soft clipping' => 14031
        };
-writing fusion junction support info.
-outputting the spanning read info: /tmp/nxf.zto05XNcdp/fi_workdir/659_bGW-T1-TRNA-1_A23MVY2LT4_1.star.cSorted.dupsMarked.bam.fusion_spanning_info.
 - counting read alignments among fusion contigs.

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   -fusion SPANNING read extraction for scaff: ANKRD24--KEAP1

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   -fusion SPANNING read extraction for scaff: CRYZL2P--SEC16B

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   
[27000]   
[28000]   
[29000]   
[30000]   
[31000]   
[32000]   
[33000]   
[34000]   
[35000]   
[36000]   
[37000]   
[38000]   
[39000]   
[40000]   
[41000]   
[42000]   
[43000]   
[44000]   
[45000]   
[46000]   
[47000]   
[48000]   
[49000]   
[50000]   
[51000]   
[52000]   
[53000]   
[54000]   
[55000]   
[56000]   
[57000]   
[58000]   
[59000]   -fusion SPANNING read extraction for scaff: DIP2B--PTRHD1

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   
[27000]   
[28000]   
[29000]   
[30000]   
[31000]   
[32000]   
[33000]   
[34000]   
[35000]   
[36000]   
[37000]   
[38000]   
[39000]   
[40000]   
[41000]   
[42000]   
[43000]   
[44000]   
[45000]   
[46000]   
[47000]   
[48000]   
[49000]   
[50000]   
[51000]   
[52000]   
[53000]   
[54000]   
[55000]   
[56000]   
[57000]   
[58000]   
[59000]   
[60000]   
[61000]   
[62000]   
[63000]   
[64000]   
[65000]   
[66000]   
[67000]   
[68000]   
[69000]   
[70000]   
[71000]   
[72000]   
[73000]   
[74000]   
[75000]   
[76000]   
[77000]   
[78000]   
[79000]   
[80000]   
[81000]   
[82000]   
[83000]   
[84000]   
[85000]   
[86000]   
[87000]   
[88000]   
[89000]   
[90000]   
[91000]   
[92000]   
[93000]   
[94000]   
[95000]   
[96000]   
[97000]   
[98000]   
[99000]   
[100000]   
[101000]   
[102000]   
[103000]   
[104000]   
[105000]   
[106000]   
[107000]   
[108000]   
[109000]   
[110000]   
[111000]   
[112000]   
[113000]   
[114000]   
[115000]   
[116000]   
[117000]   
[118000]   
[119000]   
[120000]   
[121000]   
[122000]   
[123000]   
[124000]   
[125000]   
[126000]   
[127000]   
[128000]   
[129000]   
[130000]   
[131000]   
[132000]   
[133000]   
[134000]   
[135000]   
[136000]   
[137000]   
[138000]   
[139000]   
[140000]   
[141000]   
[142000]   
[143000]   
[144000]   
[145000]   
[146000]   
[147000]   
[148000]   
[149000]   
[150000]   
[151000]   
[152000]   
[153000]   
[154000]   
[155000]   
[156000]   
[157000]   
[158000]   
[159000]   
[160000]   
[161000]   
[162000]   
[163000]   
[164000]   
[165000]   
[166000]   
[167000]   
[168000]   
[169000]   
[170000]   
[171000]   
[172000]   
[173000]   
[174000]   
[175000]   
[176000]   
[177000]   
[178000]   
[179000]   
[180000]   
[181000]   
[182000]   
[183000]   
[184000]   
[185000]   
[186000]   
[187000]   
[188000]   
[189000]   
[190000]   
[191000]   
[192000]   
[193000]   
[194000]   
[195000]   
[196000]   
[197000]   
[198000]   
[199000]   
[200000]   
[201000]   
[202000]   
[203000]   
[204000]   
[205000]   
[206000]   
[207000]   
[208000]   
[209000]   
[210000]   
[211000]   
[212000]   
[213000]   
[214000]   
[215000]   
[216000]   
[217000]   
[218000]   
[219000]   
[220000]   
[221000]   
[222000]   
[223000]   
[224000]   
[225000]   
[226000]   
[227000]   
[228000]   
[229000]   
[230000]   
[231000]   
[232000]   
[233000]   
[234000]   
[235000]   
[236000]   
[237000]   
[238000]   
[239000]   
[240000]   
[241000]   
[242000]   
[243000]   
[244000]   
[245000]   
[246000]   
[247000]   
[248000]   
[249000]   
[250000]   
[251000]   
[252000]   
[253000]   
[254000]   
[255000]   
[256000]   
[257000]   
[258000]   
[259000]   
[260000]   
[261000]   
[262000]   
[263000]   
[264000]   
[265000]   
[266000]   
[267000]   
[268000]   
[269000]   
[270000]   
[271000]   
[272000]   
[273000]   
[274000]   
[275000]   
[276000]   
[277000]   
[278000]   
[279000]   
[280000]   
[281000]   
[282000]   
[283000]   
[284000]   
[285000]   
[286000]   
[287000]   
[288000]   
[289000]   
[290000]   
[291000]   
[292000]   
[293000]   
[294000]   
[295000]   
[296000]   
[297000]   
[298000]   
[299000]   
[300000]   
[301000]   
[302000]   
[303000]   
[304000]   
[305000]   
[306000]   
[307000]   
[308000]   
[309000]   
[310000]   
[311000]   
[312000]   
[313000]   
[314000]   
[315000]   
[316000]   
[317000]   
[318000]   
[319000]   
[320000]   
[321000]   
[322000]   
[323000]   
[324000]   
[325000]   
[326000]   
[327000]   
[328000]   
[329000]   
[330000]   
[331000]   
[332000]   
[333000]   
[334000]   
[335000]   
[336000]   
[337000]   
[338000]   
[339000]   
[340000]   
[341000]   
[342000]   
[343000]   
[344000]   
[345000]   
[346000]   
[347000]   
[348000]   
[349000]   
[350000]   
[351000]   
[352000]   
[353000]   
[354000]   
[355000]   
[356000]   
[357000]   
[358000]   
[359000]   
[360000]   
[361000]   
[362000]   
[363000]   
[364000]   
[365000]   
[366000]   
[367000]   
[368000]   
[369000]   
[370000]   
[371000]   
[372000]   
[373000]   
[374000]   
[375000]   
[376000]   
[377000]   
[378000]   
[379000]   
[380000]   
[381000]   
[382000]   
[383000]   
[384000]   
[385000]   
[386000]   
[387000]   
[388000]   
[389000]   
[390000]   
[391000]   
[392000]   
[393000]   
[394000]   
[395000]   
[396000]   
[397000]   
[398000]   
[399000]   
[400000]   
[401000]   
[402000]   
[403000]   
[404000]   
[405000]   
[406000]   
[407000]   
[408000]   
[409000]   
[410000]   
[411000]   
[412000]   
[413000]   
[414000]   
[415000]   
[416000]   
[417000]   
[418000]   
[419000]   
[420000]   
[421000]   
[422000]   
[423000]   
[424000]   
[425000]   
[426000]   
[427000]   
[428000]   
[429000]   
[430000]   
[431000]   
[432000]   
[433000]   
[434000]   
[435000]   
[436000]   
[437000]   
[438000]   
[439000]   
[440000]   
[441000]   
[442000]   
[443000]   
[444000]   
[445000]   
[446000]   
[447000]   
[448000]   
[449000]   
[450000]   
[451000]   
[452000]   
[453000]   
[454000]   
[455000]   
[456000]   
[457000]   
[458000]   -fusion SPANNING read extraction for scaff: DLG5--KCNMA1

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   
[27000]   
[28000]   
[29000]   
[30000]   
[31000]   
[32000]   
[33000]   
[34000]   
[35000]   
[36000]   
[37000]   
[38000]   
[39000]   
[40000]   
[41000]   
[42000]   
[43000]   
[44000]   
[45000]   
[46000]   
[47000]   
[48000]   
[49000]   
[50000]   
[51000]   
[52000]   
[53000]   
[54000]   
[55000]   
[56000]   
[57000]   
[58000]   
[59000]   
[60000]   
[61000]   
[62000]   
[63000]   
[64000]   
[65000]   
[66000]   
[67000]   
[68000]   
[69000]   
[70000]   
[71000]   
[72000]   
[73000]   
[74000]   
[75000]   
[76000]   
[77000]   
[78000]   
[79000]   
[80000]   
[81000]   
[82000]   
[83000]   
[84000]   
[85000]   
[86000]   
[87000]   
[88000]   
[89000]   
[90000]   
[91000]   
[92000]   
[93000]   
[94000]   
[95000]   
[96000]   
[97000]   
[98000]   
[99000]   
[100000]   
[101000]   
[102000]   
[103000]   
[104000]   
[105000]   
[106000]   
[107000]   
[108000]   
[109000]   
[110000]   
[111000]   
[112000]   
[113000]   
[114000]   
[115000]   
[116000]   
[117000]   
[118000]   
[119000]   
[120000]   
[121000]   
[122000]   
[123000]   
[124000]   
[125000]   
[126000]   
[127000]   
[128000]   
[129000]   
[130000]   
[131000]   
[132000]   
[133000]   
[134000]   
[135000]   
[136000]   
[137000]   
[138000]   
[139000]   
[140000]   
[141000]   
[142000]   
[143000]   
[144000]   
[145000]   
[146000]   
[147000]   
[148000]   
[149000]   
[150000]   
[151000]   
[152000]   
[153000]   
[154000]   
[155000]   
[156000]   
[157000]   
[158000]   
[159000]   
[160000]   
[161000]   
[162000]   
[163000]   
[164000]   
[165000]   
[166000]   
[167000]   
[168000]   
[169000]   
[170000]   
[171000]   
[172000]   
[173000]   
[174000]   
[175000]   
[176000]   
[177000]   
[178000]   
[179000]   
[180000]   
[181000]   
[182000]   
[183000]   
[184000]   
[185000]   
[186000]   
[187000]   
[188000]   
[189000]   
[190000]   
[191000]   
[192000]   
[193000]   
[194000]   
[195000]   
[196000]   
[197000]   
[198000]   
[199000]   
[200000]   
[201000]   
[202000]   
[203000]   
[204000]   
[205000]   
[206000]   
[207000]   
[208000]   
[209000]   
[210000]   
[211000]   
[212000]   
[213000]   
[214000]   
[215000]   
[216000]   
[217000]   
[218000]   
[219000]   
[220000]   
[221000]   
[222000]   
[223000]   
[224000]   
[225000]   
[226000]   
[227000]   
[228000]   
[229000]   
[230000]   
[231000]   
[232000]   
[233000]   
[234000]   
[235000]   
[236000]   
[237000]   
[238000]   
[239000]   
[240000]   
[241000]   
[242000]   
[243000]   
[244000]   
[245000]   
[246000]   
[247000]   
[248000]   
[249000]   
[250000]   
[251000]   
[252000]   
[253000]   
[254000]   
[255000]   
[256000]   
[257000]   
[258000]   
[259000]   
[260000]   
[261000]   
[262000]   
[263000]   
[264000]   
[265000]   
[266000]   
[267000]   
[268000]   
[269000]   
[270000]   
[271000]   
[272000]   
[273000]   
[274000]   
[275000]   
[276000]   
[277000]   
[278000]   
[279000]   
[280000]   
[281000]   
[282000]   
[283000]   
[284000]   
[285000]   
[286000]   
[287000]   
[288000]   
[289000]   
[290000]   
[291000]   
[292000]   
[293000]   
[294000]   
[295000]   
[296000]   
[297000]   
[298000]   
[299000]   
[300000]   
[301000]   
[302000]   
[303000]   
[304000]   
[305000]   
[306000]   
[307000]   
[308000]   
[309000]   
[310000]   
[311000]   
[312000]   
[313000]   
[314000]   
[315000]   
[316000]   
[317000]   
[318000]   
[319000]   
[320000]   
[321000]   
[322000]   
[323000]   
[324000]   
[325000]   
[326000]   
[327000]   
[328000]   
[329000]   
[330000]   
[331000]   
[332000]   
[333000]   
[334000]   
[335000]   
[336000]   
[337000]   
[338000]   
[339000]   
[340000]   
[341000]   
[342000]   
[343000]   
[344000]   
[345000]   
[346000]   
[347000]   
[348000]   
[349000]   
[350000]   
[351000]   
[352000]   
[353000]   
[354000]   
[355000]   
[356000]   
[357000]   
[358000]   
[359000]   
[360000]   -fusion SPANNING read extraction for scaff: DLG5--CTSLP1

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   
[27000]   
[28000]   
[29000]   
[30000]   
[31000]   
[32000]   
[33000]   
[34000]   
[35000]   
[36000]   
[37000]   
[38000]   
[39000]   
[40000]   
[41000]   
[42000]   
[43000]   
[44000]   
[45000]   
[46000]   
[47000]   
[48000]   
[49000]   
[50000]   
[51000]   
[52000]   
[53000]   
[54000]   
[55000]   
[56000]   
[57000]   
[58000]   
[59000]   
[60000]   
[61000]   
[62000]   
[63000]   
[64000]   
[65000]   
[66000]   
[67000]   
[68000]   
[69000]   
[70000]   
[71000]   
[72000]   
[73000]   
[74000]   
[75000]   
[76000]   
[77000]   
[78000]   
[79000]   
[80000]   
[81000]   
[82000]   
[83000]   
[84000]   
[85000]   
[86000]   
[87000]   
[88000]   
[89000]   
[90000]   
[91000]   
[92000]   
[93000]   
[94000]   
[95000]   
[96000]   
[97000]   
[98000]   -fusion SPANNING read extraction for scaff: GPRC5A--RFC1

[1000]   
[2000]   
[3000]   
[4000]   -fusion SPANNING read extraction for scaff: GTF2A1L--STON1-GTF2A1L

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   
[27000]   
[28000]   
[29000]   
[30000]   
[31000]   
[32000]   
[33000]   
[34000]   
[35000]   
[36000]   
[37000]   
[38000]   
[39000]   
[40000]   
[41000]   
[42000]   
[43000]   
[44000]   
[45000]   
[46000]   
[47000]   
[48000]   
[49000]   
[50000]   
[51000]   
[52000]   
[53000]   
[54000]   
[55000]   
[56000]   
[57000]   
[58000]   
[59000]   
[60000]   
[61000]   
[62000]   
[63000]   
[64000]   
[65000]   
[66000]   
[67000]   
[68000]   
[69000]   
[70000]   
[71000]   
[72000]   
[73000]   
[74000]   
[75000]   
[76000]   
[77000]   
[78000]   
[79000]   
[80000]   -fusion SPANNING read extraction for scaff: JMJD1C--LINC00841

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   
[27000]   
[28000]   
[29000]   
[30000]   
[31000]   
[32000]   
[33000]   
[34000]   
[35000]   
[36000]   
[37000]   
[38000]   
[39000]   
[40000]   
[41000]   
[42000]   
[43000]   
[44000]   
[45000]   
[46000]   
[47000]   
[48000]   
[49000]   
[50000]   
[51000]   
[52000]   
[53000]   
[54000]   
[55000]   
[56000]   
[57000]   
[58000]   
[59000]   
[60000]   
[61000]   
[62000]   
[63000]   
[64000]   
[65000]   
[66000]   
[67000]   
[68000]   
[69000]   
[70000]   
[71000]   
[72000]   
[73000]   
[74000]   
[75000]   
[76000]   
[77000]   
[78000]   
[79000]   
[80000]   -fusion SPANNING read extraction for scaff: JMJD1C--AL137026.2

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   
[27000]   
[28000]   
[29000]   
[30000]   
[31000]   
[32000]   
[33000]   
[34000]   
[35000]   
[36000]   
[37000]   
[38000]   
[39000]   
[40000]   
[41000]   
[42000]   
[43000]   
[44000]   
[45000]   
[46000]   
[47000]   
[48000]   
[49000]   
[50000]   
[51000]   
[52000]   
[53000]   
[54000]   
[55000]   
[56000]   
[57000]   
[58000]   
[59000]   
[60000]   
[61000]   
[62000]   
[63000]   
[64000]   
[65000]   
[66000]   
[67000]   
[68000]   
[69000]   
[70000]   
[71000]   
[72000]   
[73000]   
[74000]   
[75000]   
[76000]   
[77000]   
[78000]   
[79000]   
[80000]   
[81000]   
[82000]   
[83000]   
[84000]   -fusion SPANNING read extraction for scaff: MRPS6--RUNX1

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   
[27000]   
[28000]   
[29000]   -fusion SPANNING read extraction for scaff: NDUFA9--C12orf4

[1000]   
[2000]   
[3000]   -fusion SPANNING read extraction for scaff: PCDHA10--PCDHAC2

[1000]   
[2000]   
[3000]   -fusion SPANNING read extraction for scaff: PCDHA10--PCDHAC1

[1000]   
[2000]   
[3000]   -fusion SPANNING read extraction for scaff: PCDHA10--PCDHA13

[1000]   
[2000]   
[3000]   -fusion SPANNING read extraction for scaff: PCDHA4--PCDHAC2

[1000]   
[2000]   -fusion SPANNING read extraction for scaff: PCDHA4--PCDHAC1

[1000]   
[2000]   -fusion SPANNING read extraction for scaff: PCDHA4--PCDHA13

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   
[27000]   
[28000]   
[29000]   
[30000]   
[31000]   
[32000]   
[33000]   
[34000]   
[35000]   
[36000]   
[37000]   
[38000]   
[39000]   
[40000]   
[41000]   
[42000]   
[43000]   
[44000]   
[45000]   
[46000]   
[47000]   
[48000]   
[49000]   -fusion SPANNING read extraction for scaff: PKP2--ASS1P14

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   
[27000]   
[28000]   
[29000]   
[30000]   
[31000]   
[32000]   
[33000]   
[34000]   
[35000]   
[36000]   
[37000]   
[38000]   
[39000]   
[40000]   
[41000]   
[42000]   
[43000]   
[44000]   
[45000]   
[46000]   
[47000]   
[48000]   
[49000]   
[50000]   
[51000]   
[52000]   
[53000]   
[54000]   
[55000]   
[56000]   
[57000]   
[58000]   
[59000]   
[60000]   
[61000]   
[62000]   
[63000]   
[64000]   
[65000]   
[66000]   
[67000]   
[68000]   
[69000]   -fusion SPANNING read extraction for scaff: POLR2E--KEAP1

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   
[27000]   
[28000]   
[29000]   
[30000]   
[31000]   
[32000]   
[33000]   
[34000]   
[35000]   
[36000]   
[37000]   
[38000]   
[39000]   
[40000]   
[41000]   
[42000]   
[43000]   
[44000]   
[45000]   
[46000]   
[47000]   
[48000]   
[49000]   
[50000]   
[51000]   
[52000]   
[53000]   
[54000]   
[55000]   
[56000]   
[57000]   
[58000]   
[59000]   
[60000]   
[61000]   
[62000]   
[63000]   
[64000]   
[65000]   
[66000]   
[67000]   
[68000]   
[69000]   
[70000]   
[71000]   
[72000]   
[73000]   
[74000]   
[75000]   
[76000]   
[77000]   
[78000]   
[79000]   
[80000]   
[81000]   
[82000]   
[83000]   
[84000]   
[85000]   
[86000]   
[87000]   
[88000]   
[89000]   
[90000]   
[91000]   
[92000]   
[93000]   
[94000]   
[95000]   
[96000]   
[97000]   
[98000]   
[99000]   
[100000]   
[101000]   
[102000]   -fusion SPANNING read extraction for scaff: PTPRK--RSPO3

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   
[27000]   
[28000]   
[29000]   
[30000]   
[31000]   
[32000]   
[33000]   
[34000]   
[35000]   
[36000]   
[37000]   
[38000]   
[39000]   
[40000]   
[41000]   
[42000]   
[43000]   
[44000]   
[45000]   
[46000]   
[47000]   
[48000]   
[49000]   
[50000]   
[51000]   
[52000]   
[53000]   
[54000]   
[55000]   
[56000]   
[57000]   
[58000]   
[59000]   
[60000]   
[61000]   
[62000]   
[63000]   
[64000]   
[65000]   
[66000]   
[67000]   
[68000]   
[69000]   
[70000]   
[71000]   
[72000]   
[73000]   
[74000]   
[75000]   
[76000]   
[77000]   
[78000]   
[79000]   
[80000]   
[81000]   
[82000]   
[83000]   
[84000]   
[85000]   
[86000]   
[87000]   
[88000]   
[89000]   
[90000]   
[91000]   
[92000]   
[93000]   
[94000]   
[95000]   
[96000]   
[97000]   
[98000]   -fusion SPANNING read extraction for scaff: RFC1--GPRC5A

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   
[27000]   
[28000]   
[29000]   
[30000]   
[31000]   
[32000]   
[33000]   
[34000]   
[35000]   
[36000]   
[37000]   
[38000]   
[39000]   
[40000]   
[41000]   
[42000]   
[43000]   
[44000]   
[45000]   
[46000]   
[47000]   
[48000]   
[49000]   
[50000]   
[51000]   
[52000]   
[53000]   
[54000]   
[55000]   
[56000]   
[57000]   
[58000]   
[59000]   
[60000]   
[61000]   
[62000]   
[63000]   
[64000]   
[65000]   
[66000]   
[67000]   
[68000]   
[69000]   
[70000]   
[71000]   
[72000]   
[73000]   
[74000]   
[75000]   
[76000]   
[77000]   
[78000]   
[79000]   
[80000]   
[81000]   
[82000]   
[83000]   
[84000]   
[85000]   
[86000]   
[87000]   
[88000]   
[89000]   
[90000]   
[91000]   
[92000]   
[93000]   
[94000]   
[95000]   
[96000]   
[97000]   
[98000]   
[99000]   
[100000]   
[101000]   
[102000]   
[103000]   
[104000]   
[105000]   
[106000]   
[107000]   
[108000]   -fusion SPANNING read extraction for scaff: SLC5A3--RUNX1

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   -fusion SPANNING read extraction for scaff: STX18--STK32B

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   
[27000]   
[28000]   
[29000]   
[30000]   
[31000]   
[32000]   
[33000]   
[34000]   
[35000]   
[36000]   
[37000]   
[38000]   
[39000]   
[40000]   
[41000]   
[42000]   
[43000]   
[44000]   
[45000]   
[46000]   
[47000]   
[48000]   
[49000]   
[50000]   
[51000]   
[52000]   
[53000]   -fusion SPANNING read extraction for scaff: SULT1B1--TBC1D1

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   -fusion SPANNING read extraction for scaff: SULT1B1--AC098680.2

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   -fusion SPANNING read extraction for scaff: TLK2--AC240565.1

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   -fusion SPANNING read extraction for scaff: TLK2--FAM157A

[1000]   
[2000]   
[3000]   -fusion SPANNING read extraction for scaff: TLK2P1--AC110079.1

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   -fusion SPANNING read extraction for scaff: TVP23C--CDRT4

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   
[27000]   
[28000]   
[29000]   
[30000]   
[31000]   
[32000]   
[33000]   
[34000]   
[35000]   
[36000]   
[37000]   
[38000]   
[39000]   
[40000]   
[41000]   
[42000]   
[43000]   
[44000]   
[45000]   
[46000]   
[47000]   
[48000]   
[49000]   
[50000]   
[51000]   
[52000]   
[53000]   
[54000]   
[55000]   
[56000]   
[57000]   
[58000]   
[59000]   
[60000]   
[61000]   
[62000]   
[63000]   
[64000]   
[65000]   
[66000]   
[67000]   
[68000]   
[69000]   
[70000]   
[71000]   
[72000]   
[73000]   
[74000]   
[75000]   
[76000]   
[77000]   
[78000]   
[79000]   
[80000]   
[81000]   
[82000]   
[83000]   
[84000]   
[85000]   
[86000]   
[87000]   
[88000]   
[89000]   
[90000]   
[91000]   
[92000]   
[93000]   
[94000]   
[95000]   
[96000]   
[97000]   
[98000]   
[99000]   
[100000]   
[101000]   
[102000]   
[103000]   
[104000]   
[105000]   
[106000]   
[107000]   
[108000]   
[109000]   
[110000]   
[111000]   
[112000]   
[113000]   
[114000]   
[115000]   
[116000]   
[117000]   
[118000]   
[119000]   
[120000]   
[121000]   
[122000]   
[123000]   
[124000]   
[125000]   
[126000]   
[127000]   
[128000]   
[129000]   
[130000]   
[131000]   
[132000]   
[133000]   
[134000]   
[135000]   
[136000]   
[137000]   
[138000]   
[139000]   
[140000]   
[141000]   
[142000]   
[143000]   
[144000]   
[145000]   
[146000]   
[147000]   
[148000]   
[149000]   
[150000]   
[151000]   
[152000]   
[153000]   
[154000]   
[155000]   
[156000]   
[157000]   
[158000]   
[159000]   
[160000]   
[161000]   
[162000]   
[163000]   
[164000]   
[165000]   
[166000]   
[167000]   
[168000]   
[169000]   
[170000]   
[171000]   
[172000]   
[173000]   
[174000]   -fusion SPANNING read extraction for scaff: TYK2--SBNO2

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   
[27000]   
[28000]   
[29000]   
[30000]   
[31000]   
[32000]   
[33000]   
[34000]   
[35000]   
[36000]   
[37000]   
[38000]   
[39000]   
[40000]   
[41000]   
[42000]   
[43000]   
[44000]   
[45000]   
[46000]   
[47000]   
[48000]   
[49000]   
[50000]   
[51000]   
[52000]   
[53000]   
[54000]   
[55000]   
[56000]   
[57000]   
[58000]   
[59000]   
[60000]   -fusion SPANNING read extraction for scaff: WDR19--ATP8A1
-filtered reads reasons: $VAR1 = {
          'seq similar region alignment' => 2523,
          'lacks exon overlap' => 13407
        };
EM: Starting log likelihood: -4403.920367
EM: Round [1] log likelihood: -4388.174926
EM: Round [2] log likelihood: -4388.069941
EM: Round [3] log likelihood: -4388.051635
EM: Round [4] log likelihood: -4388.035870
EM: Round [5] log likelihood: -4388.021045
EM: Round [6] log likelihood: -4388.007022
EM: Round [7] log likelihood: -4387.993743
EM: Round [8] log likelihood: -4387.981159
EM: Round [9] log likelihood: -4387.969225
EM: Round [10] log likelihood: -4387.957901
EM: Round [11] log likelihood: -4387.947150
EM: Round [12] log likelihood: -4387.936936
EM: Round [13] log likelihood: -4387.927228
EM: Round [14] log likelihood: -4387.917996
EM: Round [15] log likelihood: -4387.909213
EM: Round [16] log likelihood: -4387.900853
EM: Round [17] log likelihood: -4387.892893
EM: Round [18] log likelihood: -4387.885310
EM: Round [19] log likelihood: -4387.878084
EM: Round [20] log likelihood: -4387.871196
EM: Round [21] log likelihood: -4387.864628
EM: Round [22] log likelihood: -4387.858363
EM: Round [23] log likelihood: -4387.852385
EM: Round [24] log likelihood: -4387.846680
EM: Round [25] log likelihood: -4387.841234
EM: Round [26] log likelihood: -4387.836033
EM: Round [27] log likelihood: -4387.831065
EM: Round [28] log likelihood: -4387.826320
EM: Round [29] log likelihood: -4387.821785
EM: Round [30] log likelihood: -4387.817451
EM: Round [31] log likelihood: -4387.813307
EM: Round [32] log likelihood: -4387.809346
EM: Round [33] log likelihood: -4387.805558
EM: Round [34] log likelihood: -4387.801935
EM: Round [35] log likelihood: -4387.798469
EM: Round [36] log likelihood: -4387.795152
EM: Round [37] log likelihood: -4387.791979
EM: Round [38] log likelihood: -4387.788942
EM: Round [39] log likelihood: -4387.786036
EM: Round [40] log likelihood: -4387.783253
EM: Round [41] log likelihood: -4387.780589
EM: Round [42] log likelihood: -4387.778039
EM: Round [43] log likelihood: -4387.775596
EM: Round [44] log likelihood: -4387.773257
EM: Round [45] log likelihood: -4387.771016
EM: Round [46] log likelihood: -4387.768870
EM: Round [47] log likelihood: -4387.766814
EM: Round [48] log likelihood: -4387.764844
EM: Round [49] log likelihood: -4387.762957
EM: Round [50] log likelihood: -4387.761148
EM: Round [51] log likelihood: -4387.759415
EM: Round [52] log likelihood: -4387.757754
EM: Round [53] log likelihood: -4387.756162
EM: Round [54] log likelihood: -4387.754636
EM: Round [55] log likelihood: -4387.753174
EM: Round [56] log likelihood: -4387.751772
EM: Round [57] log likelihood: -4387.750427
EM: Round [58] log likelihood: -4387.749139
EM: Round [59] log likelihood: -4387.747903
EM: Round [60] log likelihood: -4387.746718
EM: Round [61] log likelihood: -4387.745582
EM: Round [62] log likelihood: -4387.744493
EM: Round [63] log likelihood: -4387.743448
EM: Round [64] log likelihood: -4387.742446
EM: Round [65] log likelihood: -4387.741485
EM: Round [66] log likelihood: -4387.740564
EM: Round [67] log likelihood: -4387.739680
EM: Round [68] log likelihood: -4387.738832
EM: Round [69] log likelihood: -4387.738019
EM: Round [70] log likelihood: -4387.737239
EM: Round [71] log likelihood: -4387.736490
EM: Round [72] log likelihood: -4387.735772
EM: Round [73] log likelihood: -4387.735084
EM: Round [74] log likelihood: -4387.734423
EM: Round [75] log likelihood: -4387.733789
EM: Round [76] log likelihood: -4387.733181
EM: Round [77] log likelihood: -4387.732598
EM: Round [78] log likelihood: -4387.732038
EM: Round [79] log likelihood: -4387.731501
EM: Round [80] log likelihood: -4387.730985
EM: Round [81] log likelihood: -4387.730491
EM: Round [82] log likelihood: -4387.730017
EM: Round [83] log likelihood: -4387.729561
EM: Round [84] log likelihood: -4387.729124
EM: Round [85] log likelihood: -4387.728705
EM: Round [86] log likelihood: -4387.728303
EM: Round [87] log likelihood: -4387.727917
EM: Round [88] log likelihood: -4387.727546
EM: Round [89] log likelihood: -4387.727191
EM: Round [90] log likelihood: -4387.726850
EM: Round [91] log likelihood: -4387.726522
EM: Round [92] log likelihood: -4387.726208
EM: Round [93] log likelihood: -4387.725907
EM: Round [94] log likelihood: -4387.725617
EM: Round [95] log likelihood: -4387.725339
EM: Round [96] log likelihood: -4387.725073
EM: Round [97] log likelihood: -4387.724817
EM: Round [98] log likelihood: -4387.724572
EM: Round [99] log likelihood: -4387.724336
EM: Round [100] log likelihood: -4387.724110
EM: Round [101] log likelihood: -4387.723893
EM: Round [102] log likelihood: -4387.723684
EM: Round [103] log likelihood: -4387.723484
EM: Round [104] log likelihood: -4387.723292
EM: Round [105] log likelihood: -4387.723108
EM: Round [106] log likelihood: -4387.722931
EM: Round [107] log likelihood: -4387.722761
EM: Round [108] log likelihood: -4387.722599
EM: Round [109] log likelihood: -4387.722442
EM: Round [110] log likelihood: -4387.722292
EM: Round [111] log likelihood: -4387.722148
EM: Round [112] log likelihood: -4387.722010
EM: Round [113] log likelihood: -4387.721877
EM: Round [114] log likelihood: -4387.721750
EM: Round [115] log likelihood: -4387.721627
EM: Round [116] log likelihood: -4387.721510
EM: Round [117] log likelihood: -4387.721397
EM: Round [118] log likelihood: -4387.721289
EM: Round [119] log likelihood: -4387.721185
EM: Round [120] log likelihood: -4387.721086
EM: Stopping iterations at round 120 due to insufficient improvement in likelihood.
[bam_sort_core] merging from 0 files and 8 in-memory blocks...
-extracting read coordinates from /tmp/nxf.zto05XNcdp/659_bGW-T1-TRNA-1_A23MVY2LT4_1.consolidated.bam into /tmp/nxf.zto05XNcdp/659_bGW-T1-TRNA-1_A23MVY2LT4_1.consolidated.bam.read_coords

CMD: touch /tmp/nxf.zto05XNcdp/659_bGW-T1-TRNA-1_A23MVY2LT4_1.consolidated.bam.read_coords.ok
CMD: /usr/bin/sort --parallel=1 -S10G -T . -k1,1 -k2,2 -k4,4n /tmp/nxf.zto05XNcdp/659_bGW-T1-TRNA-1_A23MVY2LT4_1.consolidated.bam.read_coords > /tmp/nxf.zto05XNcdp/659_bGW-T1-TRNA-1_A23MVY2LT4_1.consolidated.bam.read_coords.sort_by_readname
CMD: /usr/bin/sort --parallel=1 -S10G -T . -k1,1 -k3,3n /tmp/nxf.zto05XNcdp/659_bGW-T1-TRNA-1_A23MVY2LT4_1.consolidated.bam.frag_coords > /tmp/nxf.zto05XNcdp/659_bGW-T1-TRNA-1_A23MVY2LT4_1.consolidated.bam.frag_coords.coord_sorted
CMD: /usr/local/src/STAR-Fusion/FusionInspector/FusionFilter/util/blast_filter.pl --fusion_preds /tmp/nxf.zto05XNcdp/fi_workdir/659_bGW-T1-TRNA-1_A23MVY2LT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo --genome_lib_dir ctat_genome_lib_build_dir
CMD: /usr/local/src/STAR-Fusion/FusionInspector/FusionFilter/util/promiscuity_filter.pl --fusion_preds /tmp/nxf.zto05XNcdp/fi_workdir/659_bGW-T1-TRNA-1_A23MVY2LT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo.post_blast_filter  --genome_lib_dir ctat_genome_lib_build_dir  --max_promiscuity 10  --min_pct_dom_promiscuity 50 
CMD: cp /tmp/nxf.zto05XNcdp/fi_workdir/659_bGW-T1-TRNA-1_A23MVY2LT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo.post_blast_filter.post_promisc_filter /tmp/nxf.zto05XNcdp/659_bGW-T1-TRNA-1_A23MVY2LT4_1.post_blast_and_promiscuity_filter
-done, see /tmp/nxf.zto05XNcdp/659_bGW-T1-TRNA-1_A23MVY2LT4_1.post_blast_and_promiscuity_filter.annot_filter.pass
EM: Starting log likelihood: -4079.566636
EM: Round [1] log likelihood: -4071.779836
EM: Round [2] log likelihood: -4071.775656
EM: Round [3] log likelihood: -4071.775655
EM: Stopping iterations at round 3 due to insufficient improvement in likelihood.
-total frags in /tmp/nxf.zto05XNcdp/659_bGW-T1-TRNA-1_A23MVY2LT4_1_1.fastp.fastq.gz: 295367110
Warning - not locating file: /tmp/nxf.zto05XNcdp/659_bGW-T1-TRNA-1_A23MVY2LT4_1.gmap_trinity_GG.fusions.gff3.bed
WARNING, no entry stored in dbm for [ENSG00000280136.2]
WARNING, no entry stored in dbm for [ENSG00000226049.3]
WARNING, no entry stored in dbm for [ENSG00000260404.3]
WARNING, no entry stored in dbm for [ENSG00000236417.2]
WARNING, no entry stored in dbm for [ENSG00000242193.11]
WARNING, no entry stored in dbm for [ENSG00000242193.11]
WARNING, no entry stored in dbm for [ENSG00000068781.21]
ls: cannot access 'IGV_inputs': No such file or directory