Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ca/1e1cb1c73fcdb163679d192f934d6a/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ca/1e1cb1c73fcdb163679d192f934d6a/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0c/ad3f8338c39b037693b05a24967f73/659_dm4-T1-TRNA-1_A23MVY2LT4_1_R2.fastq.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0c/ad3f8338c39b037693b05a24967f73/659_dm4-T1-TRNA-1_A23MVY2LT4_1_R1.fastq.gz
==> STAGING COMPLETE (4 inputs)

ls: *.fail.fastq.gz: No such file or directory
ls: *.merged.fastq.gz: No such file or directory