Using GATK jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar
Running:
java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xmx121241M -XX:-UsePerfData -XX:ParallelGCThreads=2 -jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar MarkDuplicates --INPUT 659_bua-T1-TRNA-1_A23MVY2LT4_1.Aligned.sortedByCoord.out.bam --OUTPUT 659_bua-T1-TRNA-1_A23MVY2LT4_1.md.bam --METRICS_FILE 659_bua-T1-TRNA-1_A23MVY2LT4_1.md.bam.metrics --TMP_DIR . --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa -REMOVE_DUPLICATES false -VALIDATION_STRINGENCY LENIENT
09:30:10.873 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar!/com/intel/gkl/native/libgkl_compression.so
[Mon Jun 08 09:30:10 GMT 2026] MarkDuplicates --INPUT 659_bua-T1-TRNA-1_A23MVY2LT4_1.Aligned.sortedByCoord.out.bam --OUTPUT 659_bua-T1-TRNA-1_A23MVY2LT4_1.md.bam --METRICS_FILE 659_bua-T1-TRNA-1_A23MVY2LT4_1.md.bam.metrics --REMOVE_DUPLICATES false --TMP_DIR . --VALIDATION_STRINGENCY LENIENT --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --FLOW_MODE false --FLOW_QUALITY_SUM_STRATEGY false --USE_END_IN_UNPAIRED_READS false --USE_UNPAIRED_CLIPPED_END false --UNPAIRED_END_UNCERTAINTY 0 --FLOW_SKIP_FIRST_N_FLOWS 0 --FLOW_Q_IS_KNOWN_END false --FLOW_EFFECTIVE_QUALITY_THRESHOLD 15 --ADD_PG_TAG_TO_READS true --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX <optimized capture of last three ':' separated fields as numeric values> --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Mon Jun 08 09:30:10 GMT 2026] Executing as ?@nf-0dc2945b86374cd9354a5dbd7017363e-1b981-cxshf on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 17.0.3-internal+0-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:4.4.0.0
INFO 2026-06-08 09:30:10 MarkDuplicates Start of doWork freeMemory: 105802072; totalMemory: 134217728; maxMemory: 127137742848
INFO 2026-06-08 09:30:10 MarkDuplicates Reading input file and constructing read end information.
INFO 2026-06-08 09:30:10 MarkDuplicates Will retain up to 460643995 data points before spilling to disk.
INFO 2026-06-08 09:30:15 MarkDuplicates Read 1,000,000 records. Elapsed time: 00:00:02s. Time for last 1,000,000: 2s. Last read position: chr1:1,211,816
INFO 2026-06-08 09:30:15 MarkDuplicates Tracking 4157 as yet unmatched pairs. 923 records in RAM.
INFO 2026-06-08 09:30:18 MarkDuplicates Read 2,000,000 records. Elapsed time: 00:00:04s. Time for last 1,000,000: 2s. Last read position: chr1:1,520,206
INFO 2026-06-08 09:30:18 MarkDuplicates Tracking 7339 as yet unmatched pairs. 523 records in RAM.
INFO 2026-06-08 09:30:20 MarkDuplicates Read 3,000,000 records. Elapsed time: 00:00:06s. Time for last 1,000,000: 1s. Last read position: chr1:6,192,935
INFO 2026-06-08 09:30:20 MarkDuplicates Tracking 12595 as yet unmatched pairs. 2757 records in RAM.
INFO 2026-06-08 09:30:21 MarkDuplicates Read 4,000,000 records. Elapsed time: 00:00:08s. Time for last 1,000,000: 1s. Last read position: chr1:8,360,618
INFO 2026-06-08 09:30:21 MarkDuplicates Tracking 13485 as yet unmatched pairs. 888 records in RAM.
INFO 2026-06-08 09:30:24 MarkDuplicates Read 5,000,000 records. Elapsed time: 00:00:10s. Time for last 1,000,000: 2s. Last read position: chr1:9,755,271
INFO 2026-06-08 09:30:24 MarkDuplicates Tracking 16058 as yet unmatched pairs. 776 records in RAM.
INFO 2026-06-08 09:30:25 MarkDuplicates Read 6,000,000 records. Elapsed time: 00:00:12s. Time for last 1,000,000: 1s. Last read position: chr1:11,956,924
INFO 2026-06-08 09:30:25 MarkDuplicates Tracking 21479 as yet unmatched pairs. 3410 records in RAM.
INFO 2026-06-08 09:30:27 MarkDuplicates Read 7,000,000 records. Elapsed time: 00:00:13s. Time for last 1,000,000: 1s. Last read position: chr1:15,765,209
INFO 2026-06-08 09:30:27 MarkDuplicates Tracking 21021 as yet unmatched pairs. 190 records in RAM.
INFO 2026-06-08 09:30:29 MarkDuplicates Read 8,000,000 records. Elapsed time: 00:00:15s. Time for last 1,000,000: 1s. Last read position: chr1:17,616,149
INFO 2026-06-08 09:30:29 MarkDuplicates Tracking 23688 as yet unmatched pairs. 125 records in RAM.
INFO 2026-06-08 09:30:31 MarkDuplicates Read 9,000,000 records. Elapsed time: 00:00:17s. Time for last 1,000,000: 2s. Last read position: chr1:19,345,209
INFO 2026-06-08 09:30:31 MarkDuplicates Tracking 27981 as yet unmatched pairs. 1615 records in RAM.
INFO 2026-06-08 09:30:33 MarkDuplicates Read 10,000,000 records. Elapsed time: 00:00:19s. Time for last 1,000,000: 2s. Last read position: chr1:21,824,720
INFO 2026-06-08 09:30:33 MarkDuplicates Tracking 29638 as yet unmatched pairs. 664 records in RAM.
INFO 2026-06-08 09:30:34 MarkDuplicates Read 11,000,000 records. Elapsed time: 00:00:21s. Time for last 1,000,000: 1s. Last read position: chr1:22,647,375
INFO 2026-06-08 09:30:34 MarkDuplicates Tracking 34028 as yet unmatched pairs. 2130 records in RAM.
INFO 2026-06-08 09:30:36 MarkDuplicates Read 12,000,000 records. Elapsed time: 00:00:22s. Time for last 1,000,000: 1s. Last read position: chr1:23,971,573
INFO 2026-06-08 09:30:36 MarkDuplicates Tracking 35659 as yet unmatched pairs. 1047 records in RAM.
INFO 2026-06-08 09:30:37 MarkDuplicates Read 13,000,000 records. Elapsed time: 00:00:24s. Time for last 1,000,000: 1s. Last read position: chr1:26,761,061
INFO 2026-06-08 09:30:37 MarkDuplicates Tracking 38346 as yet unmatched pairs. 1210 records in RAM.
INFO 2026-06-08 09:30:39 MarkDuplicates Read 14,000,000 records. Elapsed time: 00:00:26s. Time for last 1,000,000: 2s. Last read position: chr1:28,017,060
INFO 2026-06-08 09:30:39 MarkDuplicates Tracking 40313 as yet unmatched pairs. 267 records in RAM.
INFO 2026-06-08 09:30:41 MarkDuplicates Read 15,000,000 records. Elapsed time: 00:00:28s. Time for last 1,000,000: 1s. Last read position: chr1:31,666,036
INFO 2026-06-08 09:30:41 MarkDuplicates Tracking 47937 as yet unmatched pairs. 5058 records in RAM.
INFO 2026-06-08 09:30:43 MarkDuplicates Read 16,000,000 records. Elapsed time: 00:00:29s. Time for last 1,000,000: 1s. Last read position: chr1:32,327,026
INFO 2026-06-08 09:30:43 MarkDuplicates Tracking 46124 as yet unmatched pairs. 269 records in RAM.
INFO 2026-06-08 09:30:45 MarkDuplicates Read 17,000,000 records. Elapsed time: 00:00:31s. Time for last 1,000,000: 1s. Last read position: chr1:35,190,881
INFO 2026-06-08 09:30:45 MarkDuplicates Tracking 49588 as yet unmatched pairs. 1085 records in RAM.
INFO 2026-06-08 09:30:46 MarkDuplicates Read 18,000,000 records. Elapsed time: 00:00:33s. Time for last 1,000,000: 1s. Last read position: chr1:36,322,361
INFO 2026-06-08 09:30:46 MarkDuplicates Tracking 53936 as yet unmatched pairs. 2527 records in RAM.
INFO 2026-06-08 09:30:48 MarkDuplicates Read 19,000,000 records. Elapsed time: 00:00:34s. Time for last 1,000,000: 1s. Last read position: chr1:39,430,756
INFO 2026-06-08 09:30:48 MarkDuplicates Tracking 54889 as yet unmatched pairs. 740 records in RAM.
INFO 2026-06-08 09:30:50 MarkDuplicates Read 20,000,000 records. Elapsed time: 00:00:36s. Time for last 1,000,000: 2s. Last read position: chr1:40,766,529
INFO 2026-06-08 09:30:50 MarkDuplicates Tracking 57667 as yet unmatched pairs. 899 records in RAM.
INFO 2026-06-08 09:30:52 MarkDuplicates Read 21,000,000 records. Elapsed time: 00:00:38s. Time for last 1,000,000: 1s. Last read position: chr1:43,447,877
INFO 2026-06-08 09:30:52 MarkDuplicates Tracking 60046 as yet unmatched pairs. 413 records in RAM.
INFO 2026-06-08 09:30:53 MarkDuplicates Read 22,000,000 records. Elapsed time: 00:00:39s. Time for last 1,000,000: 1s. Last read position: chr1:45,607,589
INFO 2026-06-08 09:30:53 MarkDuplicates Tracking 62861 as yet unmatched pairs. 377 records in RAM.
INFO 2026-06-08 09:30:55 MarkDuplicates Read 23,000,000 records. Elapsed time: 00:00:41s. Time for last 1,000,000: 1s. Last read position: chr1:51,790,908
INFO 2026-06-08 09:30:55 MarkDuplicates Tracking 66521 as yet unmatched pairs. 1390 records in RAM.
INFO 2026-06-08 09:30:56 MarkDuplicates Read 24,000,000 records. Elapsed time: 00:00:42s. Time for last 1,000,000: 1s. Last read position: chr1:55,147,788
INFO 2026-06-08 09:30:56 MarkDuplicates Tracking 68097 as yet unmatched pairs. 387 records in RAM.
INFO 2026-06-08 09:30:57 MarkDuplicates Read 25,000,000 records. Elapsed time: 00:00:44s. Time for last 1,000,000: 1s. Last read position: chr1:66,361,669
INFO 2026-06-08 09:30:57 MarkDuplicates Tracking 70722 as yet unmatched pairs. 441 records in RAM.
INFO 2026-06-08 09:30:59 MarkDuplicates Read 26,000,000 records. Elapsed time: 00:00:45s. Time for last 1,000,000: 1s. Last read position: chr1:77,956,484
INFO 2026-06-08 09:30:59 MarkDuplicates Tracking 72872 as yet unmatched pairs. 186 records in RAM.
INFO 2026-06-08 09:31:00 MarkDuplicates Read 27,000,000 records. Elapsed time: 00:00:47s. Time for last 1,000,000: 1s. Last read position: chr1:85,581,514
INFO 2026-06-08 09:31:00 MarkDuplicates Tracking 76547 as yet unmatched pairs. 1264 records in RAM.
INFO 2026-06-08 09:31:02 MarkDuplicates Read 28,000,000 records. Elapsed time: 00:00:49s. Time for last 1,000,000: 2s. Last read position: chr1:91,535,274
INFO 2026-06-08 09:31:02 MarkDuplicates Tracking 77935 as yet unmatched pairs. 76 records in RAM.
INFO 2026-06-08 09:31:04 MarkDuplicates Read 29,000,000 records. Elapsed time: 00:00:51s. Time for last 1,000,000: 1s. Last read position: chr1:98,914,763
INFO 2026-06-08 09:31:04 MarkDuplicates Tracking 80289 as yet unmatched pairs. 75 records in RAM.
INFO 2026-06-08 09:31:06 MarkDuplicates Read 30,000,000 records. Elapsed time: 00:00:52s. Time for last 1,000,000: 1s. Last read position: chr1:108,796,341
INFO 2026-06-08 09:31:06 MarkDuplicates Tracking 83029 as yet unmatched pairs. 356 records in RAM.
INFO 2026-06-08 09:31:07 MarkDuplicates Read 31,000,000 records. Elapsed time: 00:00:54s. Time for last 1,000,000: 1s. Last read position: chr1:110,381,085
INFO 2026-06-08 09:31:07 MarkDuplicates Tracking 85702 as yet unmatched pairs. 311 records in RAM.
INFO 2026-06-08 09:31:09 MarkDuplicates Read 32,000,000 records. Elapsed time: 00:00:55s. Time for last 1,000,000: 1s. Last read position: chr1:113,940,450
INFO 2026-06-08 09:31:09 MarkDuplicates Tracking 88311 as yet unmatched pairs. 395 records in RAM.
INFO 2026-06-08 09:31:10 MarkDuplicates Read 33,000,000 records. Elapsed time: 00:00:56s. Time for last 1,000,000: 1s. Last read position: chr1:116,387,473
INFO 2026-06-08 09:31:10 MarkDuplicates Tracking 91212 as yet unmatched pairs. 758 records in RAM.
INFO 2026-06-08 09:31:12 MarkDuplicates Read 34,000,000 records. Elapsed time: 00:00:58s. Time for last 1,000,000: 1s. Last read position: chr1:119,916,620
INFO 2026-06-08 09:31:12 MarkDuplicates Tracking 97141 as yet unmatched pairs. 4117 records in RAM.
INFO 2026-06-08 09:31:13 MarkDuplicates Read 35,000,000 records. Elapsed time: 00:01:00s. Time for last 1,000,000: 1s. Last read position: chr1:119,967,524
INFO 2026-06-08 09:31:13 MarkDuplicates Tracking 98565 as yet unmatched pairs. 2650 records in RAM.
INFO 2026-06-08 09:31:14 MarkDuplicates Read 36,000,000 records. Elapsed time: 00:01:01s. Time for last 1,000,000: 1s. Last read position: chr1:121,382,828
INFO 2026-06-08 09:31:14 MarkDuplicates Tracking 98307 as yet unmatched pairs. 700 records in RAM.
INFO 2026-06-08 09:31:16 MarkDuplicates Read 37,000,000 records. Elapsed time: 00:01:02s. Time for last 1,000,000: 1s. Last read position: chr1:146,088,464
INFO 2026-06-08 09:31:16 MarkDuplicates Tracking 99395 as yet unmatched pairs. 116 records in RAM.
INFO 2026-06-08 09:31:17 MarkDuplicates Read 38,000,000 records. Elapsed time: 00:01:03s. Time for last 1,000,000: 1s. Last read position: chr1:148,149,424
INFO 2026-06-08 09:31:17 MarkDuplicates Tracking 100603 as yet unmatched pairs. 121 records in RAM.
INFO 2026-06-08 09:31:18 MarkDuplicates Read 39,000,000 records. Elapsed time: 00:01:04s. Time for last 1,000,000: 1s. Last read position: chr1:149,058,934
INFO 2026-06-08 09:31:18 MarkDuplicates Tracking 102001 as yet unmatched pairs. 465 records in RAM.
INFO 2026-06-08 09:31:19 MarkDuplicates Read 40,000,000 records. Elapsed time: 00:01:06s. Time for last 1,000,000: 1s. Last read position: chr1:149,851,251
INFO 2026-06-08 09:31:19 MarkDuplicates Tracking 103403 as yet unmatched pairs. 359 records in RAM.
INFO 2026-06-08 09:31:21 MarkDuplicates Read 41,000,000 records. Elapsed time: 00:01:07s. Time for last 1,000,000: 1s. Last read position: chr1:150,512,422
INFO 2026-06-08 09:31:21 MarkDuplicates Tracking 105761 as yet unmatched pairs. 639 records in RAM.
INFO 2026-06-08 09:31:22 MarkDuplicates Read 42,000,000 records. Elapsed time: 00:01:08s. Time for last 1,000,000: 1s. Last read position: chr1:151,055,666
INFO 2026-06-08 09:31:22 MarkDuplicates Tracking 108648 as yet unmatched pairs. 746 records in RAM.
INFO 2026-06-08 09:31:23 MarkDuplicates Read 43,000,000 records. Elapsed time: 00:01:10s. Time for last 1,000,000: 1s. Last read position: chr1:152,215,564
INFO 2026-06-08 09:31:23 MarkDuplicates Tracking 111992 as yet unmatched pairs. 1759 records in RAM.
INFO 2026-06-08 09:31:25 MarkDuplicates Read 44,000,000 records. Elapsed time: 00:01:11s. Time for last 1,000,000: 1s. Last read position: chr1:153,952,820
INFO 2026-06-08 09:31:25 MarkDuplicates Tracking 112895 as yet unmatched pairs. 437 records in RAM.
INFO 2026-06-08 09:31:27 MarkDuplicates Read 45,000,000 records. Elapsed time: 00:01:13s. Time for last 1,000,000: 2s. Last read position: chr1:154,246,291
INFO 2026-06-08 09:31:27 MarkDuplicates Tracking 115620 as yet unmatched pairs. 757 records in RAM.
INFO 2026-06-08 09:31:29 MarkDuplicates Read 46,000,000 records. Elapsed time: 00:01:15s. Time for last 1,000,000: 1s. Last read position: chr1:155,056,091
INFO 2026-06-08 09:31:29 MarkDuplicates Tracking 117763 as yet unmatched pairs. 293 records in RAM.
INFO 2026-06-08 09:31:30 MarkDuplicates Read 47,000,000 records. Elapsed time: 00:01:17s. Time for last 1,000,000: 1s. Last read position: chr1:155,765,816
INFO 2026-06-08 09:31:30 MarkDuplicates Tracking 120684 as yet unmatched pairs. 834 records in RAM.
INFO 2026-06-08 09:31:32 MarkDuplicates Read 48,000,000 records. Elapsed time: 00:01:18s. Time for last 1,000,000: 1s. Last read position: chr1:156,130,743
INFO 2026-06-08 09:31:32 MarkDuplicates Tracking 130318 as yet unmatched pairs. 7127 records in RAM.
INFO 2026-06-08 09:31:33 MarkDuplicates Read 49,000,000 records. Elapsed time: 00:01:19s. Time for last 1,000,000: 1s. Last read position: chr1:156,138,572
INFO 2026-06-08 09:31:33 MarkDuplicates Tracking 135006 as yet unmatched pairs. 8708 records in RAM.
INFO 2026-06-08 09:31:35 MarkDuplicates Read 50,000,000 records. Elapsed time: 00:01:21s. Time for last 1,000,000: 1s. Last read position: chr1:156,671,278
INFO 2026-06-08 09:31:35 MarkDuplicates Tracking 130491 as yet unmatched pairs. 1278 records in RAM.
INFO 2026-06-08 09:31:36 MarkDuplicates Read 51,000,000 records. Elapsed time: 00:01:22s. Time for last 1,000,000: 1s. Last read position: chr1:156,913,099
INFO 2026-06-08 09:31:36 MarkDuplicates Tracking 132444 as yet unmatched pairs. 241 records in RAM.
INFO 2026-06-08 09:31:37 MarkDuplicates Read 52,000,000 records. Elapsed time: 00:01:24s. Time for last 1,000,000: 1s. Last read position: chr1:160,293,440
INFO 2026-06-08 09:31:37 MarkDuplicates Tracking 135982 as yet unmatched pairs. 1430 records in RAM.
INFO 2026-06-08 09:31:39 MarkDuplicates Read 53,000,000 records. Elapsed time: 00:01:25s. Time for last 1,000,000: 1s. Last read position: chr1:161,340,633
INFO 2026-06-08 09:31:39 MarkDuplicates Tracking 138033 as yet unmatched pairs. 887 records in RAM.
INFO 2026-06-08 09:31:40 MarkDuplicates Read 54,000,000 records. Elapsed time: 00:01:27s. Time for last 1,000,000: 1s. Last read position: chr1:162,767,245
INFO 2026-06-08 09:31:40 MarkDuplicates Tracking 140313 as yet unmatched pairs. 789 records in RAM.
INFO 2026-06-08 09:31:42 MarkDuplicates Read 55,000,000 records. Elapsed time: 00:01:28s. Time for last 1,000,000: 1s. Last read position: chr1:171,522,231
INFO 2026-06-08 09:31:42 MarkDuplicates Tracking 142809 as yet unmatched pairs. 811 records in RAM.
INFO 2026-06-08 09:31:43 MarkDuplicates Read 56,000,000 records. Elapsed time: 00:01:29s. Time for last 1,000,000: 1s. Last read position: chr1:175,007,175
INFO 2026-06-08 09:31:43 MarkDuplicates Tracking 145393 as yet unmatched pairs. 1015 records in RAM.
INFO 2026-06-08 09:31:44 MarkDuplicates Read 57,000,000 records. Elapsed time: 00:01:31s. Time for last 1,000,000: 1s. Last read position: chr1:181,089,287
INFO 2026-06-08 09:31:44 MarkDuplicates Tracking 147614 as yet unmatched pairs. 627 records in RAM.
INFO 2026-06-08 09:31:46 MarkDuplicates Read 58,000,000 records. Elapsed time: 00:01:32s. Time for last 1,000,000: 1s. Last read position: chr1:183,134,696
INFO 2026-06-08 09:31:46 MarkDuplicates Tracking 151857 as yet unmatched pairs. 1988 records in RAM.
INFO 2026-06-08 09:31:47 MarkDuplicates Read 59,000,000 records. Elapsed time: 00:01:34s. Time for last 1,000,000: 1s. Last read position: chr1:186,306,659
INFO 2026-06-08 09:31:47 MarkDuplicates Tracking 152615 as yet unmatched pairs. 369 records in RAM.
INFO 2026-06-08 09:31:49 MarkDuplicates Read 60,000,000 records. Elapsed time: 00:01:35s. Time for last 1,000,000: 1s. Last read position: chr1:186,307,324
INFO 2026-06-08 09:31:49 MarkDuplicates Tracking 157783 as yet unmatched pairs. 4141 records in RAM.
INFO 2026-06-08 09:31:50 MarkDuplicates Read 61,000,000 records. Elapsed time: 00:01:37s. Time for last 1,000,000: 1s. Last read position: chr1:186,311,586
INFO 2026-06-08 09:31:50 MarkDuplicates Tracking 159182 as yet unmatched pairs. 3827 records in RAM.
INFO 2026-06-08 09:31:52 MarkDuplicates Read 62,000,000 records. Elapsed time: 00:01:39s. Time for last 1,000,000: 1s. Last read position: chr1:186,361,859
INFO 2026-06-08 09:31:52 MarkDuplicates Tracking 159806 as yet unmatched pairs. 2151 records in RAM.
INFO 2026-06-08 09:31:55 MarkDuplicates Read 63,000,000 records. Elapsed time: 00:01:41s. Time for last 1,000,000: 2s. Last read position: chr1:196,743,616
INFO 2026-06-08 09:31:55 MarkDuplicates Tracking 164617 as yet unmatched pairs. 4458 records in RAM.
INFO 2026-06-08 09:31:56 MarkDuplicates Read 64,000,000 records. Elapsed time: 00:01:42s. Time for last 1,000,000: 1s. Last read position: chr1:201,982,941
INFO 2026-06-08 09:31:56 MarkDuplicates Tracking 162917 as yet unmatched pairs. 314 records in RAM.
INFO 2026-06-08 09:31:57 MarkDuplicates Read 65,000,000 records. Elapsed time: 00:01:44s. Time for last 1,000,000: 1s. Last read position: chr1:203,833,800
INFO 2026-06-08 09:31:57 MarkDuplicates Tracking 165883 as yet unmatched pairs. 770 records in RAM.
INFO 2026-06-08 09:31:59 MarkDuplicates Read 66,000,000 records. Elapsed time: 00:01:45s. Time for last 1,000,000: 1s. Last read position: chr1:206,685,285
INFO 2026-06-08 09:31:59 MarkDuplicates Tracking 167824 as yet unmatched pairs. 399 records in RAM.
INFO 2026-06-08 09:32:00 MarkDuplicates Read 67,000,000 records. Elapsed time: 00:01:47s. Time for last 1,000,000: 1s. Last read position: chr1:215,086,548
INFO 2026-06-08 09:32:00 MarkDuplicates Tracking 170959 as yet unmatched pairs. 1014 records in RAM.
INFO 2026-06-08 09:32:02 MarkDuplicates Read 68,000,000 records. Elapsed time: 00:01:48s. Time for last 1,000,000: 1s. Last read position: chr1:223,799,899
INFO 2026-06-08 09:32:02 MarkDuplicates Tracking 172886 as yet unmatched pairs. 438 records in RAM.
INFO 2026-06-08 09:32:03 MarkDuplicates Read 69,000,000 records. Elapsed time: 00:01:49s. Time for last 1,000,000: 1s. Last read position: chr1:227,028,840
INFO 2026-06-08 09:32:03 MarkDuplicates Tracking 175797 as yet unmatched pairs. 911 records in RAM.
INFO 2026-06-08 09:32:05 MarkDuplicates Read 70,000,000 records. Elapsed time: 00:01:51s. Time for last 1,000,000: 1s. Last read position: chr1:231,421,095
INFO 2026-06-08 09:32:05 MarkDuplicates Tracking 178371 as yet unmatched pairs. 418 records in RAM.
INFO 2026-06-08 09:32:06 MarkDuplicates Read 71,000,000 records. Elapsed time: 00:01:52s. Time for last 1,000,000: 1s. Last read position: chr1:235,246,453
INFO 2026-06-08 09:32:06 MarkDuplicates Tracking 181587 as yet unmatched pairs. 699 records in RAM.
INFO 2026-06-08 09:32:07 MarkDuplicates Read 72,000,000 records. Elapsed time: 00:01:54s. Time for last 1,000,000: 1s. Last read position: chr1:243,139,983
INFO 2026-06-08 09:32:07 MarkDuplicates Tracking 184015 as yet unmatched pairs. 579 records in RAM.
INFO 2026-06-08 09:32:09 MarkDuplicates Read 73,000,000 records. Elapsed time: 00:01:56s. Time for last 1,000,000: 1s. Last read position: chr1:245,367,036
INFO 2026-06-08 09:32:09 MarkDuplicates Tracking 186019 as yet unmatched pairs. 151 records in RAM.
INFO 2026-06-08 09:32:13 MarkDuplicates Read 74,000,000 records. Elapsed time: 00:01:59s. Time for last 1,000,000: 3s. Last read position: chr2:3,388,252
INFO 2026-06-08 09:32:13 MarkDuplicates Tracking 189222 as yet unmatched pairs. 187500 records in RAM.
INFO 2026-06-08 09:32:14 MarkDuplicates Read 75,000,000 records. Elapsed time: 00:02:01s. Time for last 1,000,000: 1s. Last read position: chr2:12,718,364
INFO 2026-06-08 09:32:14 MarkDuplicates Tracking 193916 as yet unmatched pairs. 192173 records in RAM.
INFO 2026-06-08 09:32:16 MarkDuplicates Read 76,000,000 records. Elapsed time: 00:02:02s. Time for last 1,000,000: 1s. Last read position: chr2:24,768,310
INFO 2026-06-08 09:32:16 MarkDuplicates Tracking 194343 as yet unmatched pairs. 192580 records in RAM.
INFO 2026-06-08 09:32:18 MarkDuplicates Read 77,000,000 records. Elapsed time: 00:02:04s. Time for last 1,000,000: 1s. Last read position: chr2:27,226,605
INFO 2026-06-08 09:32:18 MarkDuplicates Tracking 197123 as yet unmatched pairs. 195341 records in RAM.
INFO 2026-06-08 09:32:19 MarkDuplicates Read 78,000,000 records. Elapsed time: 00:02:06s. Time for last 1,000,000: 1s. Last read position: chr2:32,442,419
INFO 2026-06-08 09:32:19 MarkDuplicates Tracking 200054 as yet unmatched pairs. 198254 records in RAM.
INFO 2026-06-08 09:32:21 MarkDuplicates Read 79,000,000 records. Elapsed time: 00:02:07s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,264
INFO 2026-06-08 09:32:21 MarkDuplicates Tracking 305285 as yet unmatched pairs. 192833 records in RAM.
INFO 2026-06-08 09:32:23 MarkDuplicates Read 80,000,000 records. Elapsed time: 00:02:09s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,264
INFO 2026-06-08 09:32:23 MarkDuplicates Tracking 976984 as yet unmatched pairs. 158518 records in RAM.
INFO 2026-06-08 09:32:24 MarkDuplicates Read 81,000,000 records. Elapsed time: 00:02:11s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,406
INFO 2026-06-08 09:32:24 MarkDuplicates Tracking 1347497 as yet unmatched pairs. 139316 records in RAM.
INFO 2026-06-08 09:32:25 MarkDuplicates Read 82,000,000 records. Elapsed time: 00:02:12s. Time for last 1,000,000: 0s. Last read position: chr2:32,916,406
INFO 2026-06-08 09:32:25 MarkDuplicates Tracking 1353982 as yet unmatched pairs. 139030 records in RAM.
INFO 2026-06-08 09:32:27 MarkDuplicates Read 83,000,000 records. Elapsed time: 00:02:13s. Time for last 1,000,000: 1s. Last read position: chr2:37,286,250
INFO 2026-06-08 09:32:27 MarkDuplicates Tracking 1430923 as yet unmatched pairs. 134167 records in RAM.
INFO 2026-06-08 09:32:28 MarkDuplicates Read 84,000,000 records. Elapsed time: 00:02:15s. Time for last 1,000,000: 1s. Last read position: chr2:43,740,937
INFO 2026-06-08 09:32:28 MarkDuplicates Tracking 1428289 as yet unmatched pairs. 131507 records in RAM.
INFO 2026-06-08 09:32:30 MarkDuplicates Read 85,000,000 records. Elapsed time: 00:02:17s. Time for last 1,000,000: 2s. Last read position: chr2:54,625,954
INFO 2026-06-08 09:32:30 MarkDuplicates Tracking 1425880 as yet unmatched pairs. 129076 records in RAM.
INFO 2026-06-08 09:32:32 MarkDuplicates Read 86,000,000 records. Elapsed time: 00:02:18s. Time for last 1,000,000: 1s. Last read position: chr2:55,336,681
INFO 2026-06-08 09:32:32 MarkDuplicates Tracking 1426066 as yet unmatched pairs. 129251 records in RAM.
INFO 2026-06-08 09:32:34 MarkDuplicates Read 87,000,000 records. Elapsed time: 00:02:20s. Time for last 1,000,000: 1s. Last read position: chr2:64,552,562
INFO 2026-06-08 09:32:34 MarkDuplicates Tracking 1420917 as yet unmatched pairs. 124081 records in RAM.
INFO 2026-06-08 09:32:35 MarkDuplicates Read 88,000,000 records. Elapsed time: 00:02:22s. Time for last 1,000,000: 1s. Last read position: chr2:71,073,492
INFO 2026-06-08 09:32:35 MarkDuplicates Tracking 1418480 as yet unmatched pairs. 121613 records in RAM.
INFO 2026-06-08 09:32:37 MarkDuplicates Read 89,000,000 records. Elapsed time: 00:02:23s. Time for last 1,000,000: 1s. Last read position: chr2:74,552,397
INFO 2026-06-08 09:32:37 MarkDuplicates Tracking 1416299 as yet unmatched pairs. 119417 records in RAM.
INFO 2026-06-08 09:32:38 MarkDuplicates Read 90,000,000 records. Elapsed time: 00:02:25s. Time for last 1,000,000: 1s. Last read position: chr2:87,818,559
INFO 2026-06-08 09:32:38 MarkDuplicates Tracking 1413403 as yet unmatched pairs. 116507 records in RAM.
INFO 2026-06-08 09:32:40 MarkDuplicates Read 91,000,000 records. Elapsed time: 00:02:26s. Time for last 1,000,000: 1s. Last read position: chr2:97,585,341
INFO 2026-06-08 09:32:40 MarkDuplicates Tracking 1411142 as yet unmatched pairs. 114221 records in RAM.
INFO 2026-06-08 09:32:41 MarkDuplicates Read 92,000,000 records. Elapsed time: 00:02:28s. Time for last 1,000,000: 1s. Last read position: chr2:101,891,197
INFO 2026-06-08 09:32:41 MarkDuplicates Tracking 1409395 as yet unmatched pairs. 112430 records in RAM.
INFO 2026-06-08 09:32:43 MarkDuplicates Read 93,000,000 records. Elapsed time: 00:02:29s. Time for last 1,000,000: 1s. Last read position: chr2:108,764,593
INFO 2026-06-08 09:32:43 MarkDuplicates Tracking 1407263 as yet unmatched pairs. 110284 records in RAM.
INFO 2026-06-08 09:32:44 MarkDuplicates Read 94,000,000 records. Elapsed time: 00:02:30s. Time for last 1,000,000: 1s. Last read position: chr2:109,837,206
INFO 2026-06-08 09:32:44 MarkDuplicates Tracking 1405296 as yet unmatched pairs. 108311 records in RAM.
INFO 2026-06-08 09:32:45 MarkDuplicates Read 95,000,000 records. Elapsed time: 00:02:32s. Time for last 1,000,000: 1s. Last read position: chr2:112,086,085
INFO 2026-06-08 09:32:45 MarkDuplicates Tracking 1404860 as yet unmatched pairs. 107864 records in RAM.
INFO 2026-06-08 09:32:47 MarkDuplicates Read 96,000,000 records. Elapsed time: 00:02:33s. Time for last 1,000,000: 1s. Last read position: chr2:113,199,211
INFO 2026-06-08 09:32:47 MarkDuplicates Tracking 1402408 as yet unmatched pairs. 105396 records in RAM.
INFO 2026-06-08 09:32:48 MarkDuplicates Read 97,000,000 records. Elapsed time: 00:02:34s. Time for last 1,000,000: 1s. Last read position: chr2:128,191,030
INFO 2026-06-08 09:32:48 MarkDuplicates Tracking 1399899 as yet unmatched pairs. 102858 records in RAM.
INFO 2026-06-08 09:32:50 MarkDuplicates Read 98,000,000 records. Elapsed time: 00:02:36s. Time for last 1,000,000: 1s. Last read position: chr2:144,400,194
INFO 2026-06-08 09:32:50 MarkDuplicates Tracking 1398295 as yet unmatched pairs. 101220 records in RAM.
INFO 2026-06-08 09:32:52 MarkDuplicates Read 99,000,000 records. Elapsed time: 00:02:38s. Time for last 1,000,000: 1s. Last read position: chr2:159,170,525
INFO 2026-06-08 09:32:52 MarkDuplicates Tracking 1395455 as yet unmatched pairs. 98331 records in RAM.
INFO 2026-06-08 09:32:53 MarkDuplicates Read 100,000,000 records. Elapsed time: 00:02:40s. Time for last 1,000,000: 1s. Last read position: chr2:170,965,794
INFO 2026-06-08 09:32:53 MarkDuplicates Tracking 1392946 as yet unmatched pairs. 95782 records in RAM.
INFO 2026-06-08 09:32:55 MarkDuplicates Read 101,000,000 records. Elapsed time: 00:02:41s. Time for last 1,000,000: 1s. Last read position: chr2:175,179,185
INFO 2026-06-08 09:32:55 MarkDuplicates Tracking 1390951 as yet unmatched pairs. 93759 records in RAM.
INFO 2026-06-08 09:32:56 MarkDuplicates Read 102,000,000 records. Elapsed time: 00:02:43s. Time for last 1,000,000: 1s. Last read position: chr2:181,915,353
INFO 2026-06-08 09:32:56 MarkDuplicates Tracking 1388427 as yet unmatched pairs. 91214 records in RAM.
INFO 2026-06-08 09:32:58 MarkDuplicates Read 103,000,000 records. Elapsed time: 00:02:44s. Time for last 1,000,000: 1s. Last read position: chr2:188,989,411
INFO 2026-06-08 09:32:58 MarkDuplicates Tracking 1397434 as yet unmatched pairs. 100193 records in RAM.
INFO 2026-06-08 09:32:59 MarkDuplicates Read 104,000,000 records. Elapsed time: 00:02:46s. Time for last 1,000,000: 1s. Last read position: chr2:188,999,485
INFO 2026-06-08 09:32:59 MarkDuplicates Tracking 1386664 as yet unmatched pairs. 89413 records in RAM.
INFO 2026-06-08 09:33:01 MarkDuplicates Read 105,000,000 records. Elapsed time: 00:02:47s. Time for last 1,000,000: 1s. Last read position: chr2:189,010,298
INFO 2026-06-08 09:33:01 MarkDuplicates Tracking 1388214 as yet unmatched pairs. 90942 records in RAM.
INFO 2026-06-08 09:33:03 MarkDuplicates Read 106,000,000 records. Elapsed time: 00:02:49s. Time for last 1,000,000: 1s. Last read position: chr2:189,078,532
INFO 2026-06-08 09:33:03 MarkDuplicates Tracking 1378737 as yet unmatched pairs. 81445 records in RAM.
INFO 2026-06-08 09:33:04 MarkDuplicates Read 107,000,000 records. Elapsed time: 00:02:50s. Time for last 1,000,000: 1s. Last read position: chr2:191,001,074
INFO 2026-06-08 09:33:04 MarkDuplicates Tracking 1376781 as yet unmatched pairs. 79465 records in RAM.
INFO 2026-06-08 09:33:06 MarkDuplicates Read 108,000,000 records. Elapsed time: 00:02:52s. Time for last 1,000,000: 1s. Last read position: chr2:197,487,886
INFO 2026-06-08 09:33:06 MarkDuplicates Tracking 1372100 as yet unmatched pairs. 74771 records in RAM.
INFO 2026-06-08 09:33:07 MarkDuplicates Read 109,000,000 records. Elapsed time: 00:02:53s. Time for last 1,000,000: 1s. Last read position: chr2:202,552,809
INFO 2026-06-08 09:33:07 MarkDuplicates Tracking 1369290 as yet unmatched pairs. 71929 records in RAM.
INFO 2026-06-08 09:33:09 MarkDuplicates Read 110,000,000 records. Elapsed time: 00:02:55s. Time for last 1,000,000: 1s. Last read position: chr2:210,002,694
INFO 2026-06-08 09:33:09 MarkDuplicates Tracking 1366511 as yet unmatched pairs. 69127 records in RAM.
INFO 2026-06-08 09:33:10 MarkDuplicates Read 111,000,000 records. Elapsed time: 00:02:57s. Time for last 1,000,000: 1s. Last read position: chr2:215,364,887
INFO 2026-06-08 09:33:10 MarkDuplicates Tracking 1387404 as yet unmatched pairs. 90008 records in RAM.
INFO 2026-06-08 09:33:12 MarkDuplicates Read 112,000,000 records. Elapsed time: 00:02:58s. Time for last 1,000,000: 1s. Last read position: chr2:215,370,419
INFO 2026-06-08 09:33:12 MarkDuplicates Tracking 1396773 as yet unmatched pairs. 99371 records in RAM.
INFO 2026-06-08 09:33:13 MarkDuplicates Read 113,000,000 records. Elapsed time: 00:03:00s. Time for last 1,000,000: 1s. Last read position: chr2:215,372,219
INFO 2026-06-08 09:33:13 MarkDuplicates Tracking 1401038 as yet unmatched pairs. 103630 records in RAM.
INFO 2026-06-08 09:33:15 MarkDuplicates Read 114,000,000 records. Elapsed time: 00:03:01s. Time for last 1,000,000: 1s. Last read position: chr2:215,375,326
INFO 2026-06-08 09:33:15 MarkDuplicates Tracking 1371366 as yet unmatched pairs. 73951 records in RAM.
INFO 2026-06-08 09:33:16 MarkDuplicates Read 115,000,000 records. Elapsed time: 00:03:03s. Time for last 1,000,000: 1s. Last read position: chr2:215,378,213
INFO 2026-06-08 09:33:16 MarkDuplicates Tracking 1378429 as yet unmatched pairs. 81009 records in RAM.
INFO 2026-06-08 09:33:18 MarkDuplicates Read 116,000,000 records. Elapsed time: 00:03:05s. Time for last 1,000,000: 1s. Last read position: chr2:215,382,230
INFO 2026-06-08 09:33:18 MarkDuplicates Tracking 1385675 as yet unmatched pairs. 88243 records in RAM.
INFO 2026-06-08 09:33:21 MarkDuplicates Read 117,000,000 records. Elapsed time: 00:03:07s. Time for last 1,000,000: 2s. Last read position: chr2:215,386,782
INFO 2026-06-08 09:33:21 MarkDuplicates Tracking 1366451 as yet unmatched pairs. 69007 records in RAM.
INFO 2026-06-08 09:33:22 MarkDuplicates Read 118,000,000 records. Elapsed time: 00:03:09s. Time for last 1,000,000: 1s. Last read position: chr2:215,394,528
INFO 2026-06-08 09:33:22 MarkDuplicates Tracking 1365626 as yet unmatched pairs. 68170 records in RAM.
INFO 2026-06-08 09:33:24 MarkDuplicates Read 119,000,000 records. Elapsed time: 00:03:10s. Time for last 1,000,000: 1s. Last read position: chr2:215,404,390
INFO 2026-06-08 09:33:24 MarkDuplicates Tracking 1359952 as yet unmatched pairs. 62494 records in RAM.
INFO 2026-06-08 09:33:25 MarkDuplicates Read 120,000,000 records. Elapsed time: 00:03:12s. Time for last 1,000,000: 1s. Last read position: chr2:215,407,274
INFO 2026-06-08 09:33:25 MarkDuplicates Tracking 1364012 as yet unmatched pairs. 66528 records in RAM.
INFO 2026-06-08 09:33:27 MarkDuplicates Read 121,000,000 records. Elapsed time: 00:03:13s. Time for last 1,000,000: 1s. Last read position: chr2:215,409,993
INFO 2026-06-08 09:33:27 MarkDuplicates Tracking 1362778 as yet unmatched pairs. 65283 records in RAM.
INFO 2026-06-08 09:33:29 MarkDuplicates Read 122,000,000 records. Elapsed time: 00:03:15s. Time for last 1,000,000: 1s. Last read position: chr2:215,422,131
INFO 2026-06-08 09:33:29 MarkDuplicates Tracking 1348007 as yet unmatched pairs. 50498 records in RAM.
INFO 2026-06-08 09:33:30 MarkDuplicates Read 123,000,000 records. Elapsed time: 00:03:16s. Time for last 1,000,000: 1s. Last read position: chr2:215,428,181
INFO 2026-06-08 09:33:30 MarkDuplicates Tracking 1352639 as yet unmatched pairs. 55118 records in RAM.
INFO 2026-06-08 09:33:32 MarkDuplicates Read 124,000,000 records. Elapsed time: 00:03:18s. Time for last 1,000,000: 1s. Last read position: chr2:215,433,446
INFO 2026-06-08 09:33:32 MarkDuplicates Tracking 1349298 as yet unmatched pairs. 51767 records in RAM.
INFO 2026-06-08 09:33:33 MarkDuplicates Read 125,000,000 records. Elapsed time: 00:03:19s. Time for last 1,000,000: 1s. Last read position: chr2:216,660,678
INFO 2026-06-08 09:33:33 MarkDuplicates Tracking 1338535 as yet unmatched pairs. 40973 records in RAM.
INFO 2026-06-08 09:33:35 MarkDuplicates Read 126,000,000 records. Elapsed time: 00:03:21s. Time for last 1,000,000: 1s. Last read position: chr2:216,694,535
INFO 2026-06-08 09:33:35 MarkDuplicates Tracking 1348778 as yet unmatched pairs. 51183 records in RAM.
INFO 2026-06-08 09:33:36 MarkDuplicates Read 127,000,000 records. Elapsed time: 00:03:23s. Time for last 1,000,000: 1s. Last read position: chr2:218,558,606
INFO 2026-06-08 09:33:36 MarkDuplicates Tracking 1324042 as yet unmatched pairs. 26412 records in RAM.
INFO 2026-06-08 09:33:38 MarkDuplicates Read 128,000,000 records. Elapsed time: 00:03:24s. Time for last 1,000,000: 1s. Last read position: chr2:223,895,519
INFO 2026-06-08 09:33:38 MarkDuplicates Tracking 1321399 as yet unmatched pairs. 23744 records in RAM.
INFO 2026-06-08 09:33:39 MarkDuplicates Read 129,000,000 records. Elapsed time: 00:03:26s. Time for last 1,000,000: 1s. Last read position: chr2:230,878,059
INFO 2026-06-08 09:33:39 MarkDuplicates Tracking 1319529 as yet unmatched pairs. 21857 records in RAM.
INFO 2026-06-08 09:33:41 MarkDuplicates Read 130,000,000 records. Elapsed time: 00:03:28s. Time for last 1,000,000: 1s. Last read position: chr2:235,652,120
INFO 2026-06-08 09:33:41 MarkDuplicates Tracking 1316527 as yet unmatched pairs. 18831 records in RAM.
INFO 2026-06-08 09:33:43 MarkDuplicates Read 131,000,000 records. Elapsed time: 00:03:29s. Time for last 1,000,000: 1s. Last read position: chr2:237,340,989
INFO 2026-06-08 09:33:43 MarkDuplicates Tracking 1320245 as yet unmatched pairs. 22539 records in RAM.
INFO 2026-06-08 09:33:44 MarkDuplicates Read 132,000,000 records. Elapsed time: 00:03:31s. Time for last 1,000,000: 1s. Last read position: chr2:237,357,363
INFO 2026-06-08 09:33:44 MarkDuplicates Tracking 1312819 as yet unmatched pairs. 15098 records in RAM.
INFO 2026-06-08 09:33:46 MarkDuplicates Read 133,000,000 records. Elapsed time: 00:03:32s. Time for last 1,000,000: 1s. Last read position: chr2:237,368,887
INFO 2026-06-08 09:33:46 MarkDuplicates Tracking 1315708 as yet unmatched pairs. 17974 records in RAM.
INFO 2026-06-08 09:33:48 MarkDuplicates Read 134,000,000 records. Elapsed time: 00:03:34s. Time for last 1,000,000: 1s. Last read position: chr2:237,376,914
INFO 2026-06-08 09:33:48 MarkDuplicates Tracking 1311303 as yet unmatched pairs. 13551 records in RAM.
INFO 2026-06-08 09:33:49 MarkDuplicates Read 135,000,000 records. Elapsed time: 00:03:35s. Time for last 1,000,000: 1s. Last read position: chr2:237,388,033
INFO 2026-06-08 09:33:49 MarkDuplicates Tracking 1311956 as yet unmatched pairs. 14187 records in RAM.
INFO 2026-06-08 09:33:50 MarkDuplicates Read 136,000,000 records. Elapsed time: 00:03:37s. Time for last 1,000,000: 1s. Last read position: chr2:241,230,823
INFO 2026-06-08 09:33:50 MarkDuplicates Tracking 1300861 as yet unmatched pairs. 3057 records in RAM.
INFO 2026-06-08 09:33:52 MarkDuplicates Read 137,000,000 records. Elapsed time: 00:03:39s. Time for last 1,000,000: 2s. Last read position: chr3:4,983,099
INFO 2026-06-08 09:33:52 MarkDuplicates Tracking 1298563 as yet unmatched pairs. 78299 records in RAM.
INFO 2026-06-08 09:33:54 MarkDuplicates Read 138,000,000 records. Elapsed time: 00:03:41s. Time for last 1,000,000: 1s. Last read position: chr3:10,305,061
INFO 2026-06-08 09:33:54 MarkDuplicates Tracking 1294737 as yet unmatched pairs. 74451 records in RAM.
INFO 2026-06-08 09:33:56 MarkDuplicates Read 139,000,000 records. Elapsed time: 00:03:42s. Time for last 1,000,000: 1s. Last read position: chr3:15,434,438
INFO 2026-06-08 09:33:56 MarkDuplicates Tracking 1291930 as yet unmatched pairs. 71628 records in RAM.
INFO 2026-06-08 09:33:57 MarkDuplicates Read 140,000,000 records. Elapsed time: 00:03:44s. Time for last 1,000,000: 1s. Last read position: chr3:31,623,677
INFO 2026-06-08 09:33:57 MarkDuplicates Tracking 1289858 as yet unmatched pairs. 69497 records in RAM.
INFO 2026-06-08 09:33:59 MarkDuplicates Read 141,000,000 records. Elapsed time: 00:03:45s. Time for last 1,000,000: 1s. Last read position: chr3:38,372,491
INFO 2026-06-08 09:33:59 MarkDuplicates Tracking 1286753 as yet unmatched pairs. 66376 records in RAM.
INFO 2026-06-08 09:34:01 MarkDuplicates Read 142,000,000 records. Elapsed time: 00:03:47s. Time for last 1,000,000: 2s. Last read position: chr3:42,637,527
INFO 2026-06-08 09:34:01 MarkDuplicates Tracking 1284934 as yet unmatched pairs. 64538 records in RAM.
INFO 2026-06-08 09:34:02 MarkDuplicates Read 143,000,000 records. Elapsed time: 00:03:49s. Time for last 1,000,000: 1s. Last read position: chr3:47,413,030
INFO 2026-06-08 09:34:02 MarkDuplicates Tracking 1281964 as yet unmatched pairs. 61553 records in RAM.
INFO 2026-06-08 09:34:04 MarkDuplicates Read 144,000,000 records. Elapsed time: 00:03:50s. Time for last 1,000,000: 1s. Last read position: chr3:48,695,179
INFO 2026-06-08 09:34:04 MarkDuplicates Tracking 1280263 as yet unmatched pairs. 59830 records in RAM.
INFO 2026-06-08 09:34:05 MarkDuplicates Read 145,000,000 records. Elapsed time: 00:03:52s. Time for last 1,000,000: 1s. Last read position: chr3:49,316,877
INFO 2026-06-08 09:34:05 MarkDuplicates Tracking 1276261 as yet unmatched pairs. 55818 records in RAM.
INFO 2026-06-08 09:34:07 MarkDuplicates Read 146,000,000 records. Elapsed time: 00:03:53s. Time for last 1,000,000: 1s. Last read position: chr3:50,256,936
INFO 2026-06-08 09:34:07 MarkDuplicates Tracking 1274792 as yet unmatched pairs. 54317 records in RAM.
INFO 2026-06-08 09:34:08 MarkDuplicates Read 147,000,000 records. Elapsed time: 00:03:55s. Time for last 1,000,000: 1s. Last read position: chr3:52,480,855
INFO 2026-06-08 09:34:08 MarkDuplicates Tracking 1271338 as yet unmatched pairs. 50852 records in RAM.
INFO 2026-06-08 09:34:10 MarkDuplicates Read 148,000,000 records. Elapsed time: 00:03:56s. Time for last 1,000,000: 1s. Last read position: chr3:56,646,606
INFO 2026-06-08 09:34:10 MarkDuplicates Tracking 1268429 as yet unmatched pairs. 47921 records in RAM.
INFO 2026-06-08 09:34:11 MarkDuplicates Read 149,000,000 records. Elapsed time: 00:03:58s. Time for last 1,000,000: 1s. Last read position: chr3:64,607,023
INFO 2026-06-08 09:34:11 MarkDuplicates Tracking 1265645 as yet unmatched pairs. 45107 records in RAM.
INFO 2026-06-08 09:34:13 MarkDuplicates Read 150,000,000 records. Elapsed time: 00:03:59s. Time for last 1,000,000: 1s. Last read position: chr3:78,635,773
INFO 2026-06-08 09:34:13 MarkDuplicates Tracking 1263423 as yet unmatched pairs. 42846 records in RAM.
INFO 2026-06-08 09:34:14 MarkDuplicates Read 151,000,000 records. Elapsed time: 00:04:01s. Time for last 1,000,000: 1s. Last read position: chr3:99,794,714
INFO 2026-06-08 09:34:14 MarkDuplicates Tracking 1260614 as yet unmatched pairs. 40011 records in RAM.
INFO 2026-06-08 09:34:16 MarkDuplicates Read 152,000,000 records. Elapsed time: 00:04:02s. Time for last 1,000,000: 1s. Last read position: chr3:101,685,850
INFO 2026-06-08 09:34:16 MarkDuplicates Tracking 1260909 as yet unmatched pairs. 40282 records in RAM.
INFO 2026-06-08 09:34:17 MarkDuplicates Read 153,000,000 records. Elapsed time: 00:04:04s. Time for last 1,000,000: 1s. Last read position: chr3:113,017,529
INFO 2026-06-08 09:34:17 MarkDuplicates Tracking 1255925 as yet unmatched pairs. 35259 records in RAM.
INFO 2026-06-08 09:34:19 MarkDuplicates Read 154,000,000 records. Elapsed time: 00:04:05s. Time for last 1,000,000: 1s. Last read position: chr3:121,693,845
INFO 2026-06-08 09:34:19 MarkDuplicates Tracking 1253487 as yet unmatched pairs. 32783 records in RAM.
INFO 2026-06-08 09:34:20 MarkDuplicates Read 155,000,000 records. Elapsed time: 00:04:07s. Time for last 1,000,000: 1s. Last read position: chr3:125,013,235
INFO 2026-06-08 09:34:20 MarkDuplicates Tracking 1251362 as yet unmatched pairs. 30648 records in RAM.
INFO 2026-06-08 09:34:22 MarkDuplicates Read 156,000,000 records. Elapsed time: 00:04:08s. Time for last 1,000,000: 1s. Last read position: chr3:128,622,227
INFO 2026-06-08 09:34:22 MarkDuplicates Tracking 1248362 as yet unmatched pairs. 27614 records in RAM.
INFO 2026-06-08 09:34:24 MarkDuplicates Read 157,000,000 records. Elapsed time: 00:04:10s. Time for last 1,000,000: 2s. Last read position: chr3:129,575,538
INFO 2026-06-08 09:34:24 MarkDuplicates Tracking 1246630 as yet unmatched pairs. 25869 records in RAM.
INFO 2026-06-08 09:34:25 MarkDuplicates Read 158,000,000 records. Elapsed time: 00:04:12s. Time for last 1,000,000: 1s. Last read position: chr3:136,151,702
INFO 2026-06-08 09:34:25 MarkDuplicates Tracking 1242936 as yet unmatched pairs. 22144 records in RAM.
INFO 2026-06-08 09:34:27 MarkDuplicates Read 159,000,000 records. Elapsed time: 00:04:13s. Time for last 1,000,000: 1s. Last read position: chr3:143,122,260
INFO 2026-06-08 09:34:27 MarkDuplicates Tracking 1240735 as yet unmatched pairs. 19902 records in RAM.
INFO 2026-06-08 09:34:28 MarkDuplicates Read 160,000,000 records. Elapsed time: 00:04:15s. Time for last 1,000,000: 1s. Last read position: chr3:150,562,542
INFO 2026-06-08 09:34:28 MarkDuplicates Tracking 1237795 as yet unmatched pairs. 16911 records in RAM.
INFO 2026-06-08 09:34:30 MarkDuplicates Read 161,000,000 records. Elapsed time: 00:04:16s. Time for last 1,000,000: 1s. Last read position: chr3:160,424,913
INFO 2026-06-08 09:34:30 MarkDuplicates Tracking 1236453 as yet unmatched pairs. 15537 records in RAM.
INFO 2026-06-08 09:34:32 MarkDuplicates Read 162,000,000 records. Elapsed time: 00:04:18s. Time for last 1,000,000: 1s. Last read position: chr3:172,352,959
INFO 2026-06-08 09:34:32 MarkDuplicates Tracking 1233508 as yet unmatched pairs. 12567 records in RAM.
INFO 2026-06-08 09:34:33 MarkDuplicates Read 163,000,000 records. Elapsed time: 00:04:19s. Time for last 1,000,000: 1s. Last read position: chr3:183,808,052
INFO 2026-06-08 09:34:33 MarkDuplicates Tracking 1230452 as yet unmatched pairs. 9474 records in RAM.
INFO 2026-06-08 09:34:35 MarkDuplicates Read 164,000,000 records. Elapsed time: 00:04:21s. Time for last 1,000,000: 1s. Last read position: chr3:184,579,867
INFO 2026-06-08 09:34:35 MarkDuplicates Tracking 1227312 as yet unmatched pairs. 6322 records in RAM.
INFO 2026-06-08 09:34:36 MarkDuplicates Read 165,000,000 records. Elapsed time: 00:04:22s. Time for last 1,000,000: 1s. Last read position: chr3:190,629,326
INFO 2026-06-08 09:34:36 MarkDuplicates Tracking 1224902 as yet unmatched pairs. 3874 records in RAM.
INFO 2026-06-08 09:34:38 MarkDuplicates Read 166,000,000 records. Elapsed time: 00:04:24s. Time for last 1,000,000: 1s. Last read position: chr3:196,937,569
INFO 2026-06-08 09:34:38 MarkDuplicates Tracking 1222566 as yet unmatched pairs. 1509 records in RAM.
INFO 2026-06-08 09:34:39 MarkDuplicates Read 167,000,000 records. Elapsed time: 00:04:26s. Time for last 1,000,000: 1s. Last read position: chr4:1,900,996
INFO 2026-06-08 09:34:39 MarkDuplicates Tracking 1219224 as yet unmatched pairs. 34877 records in RAM.
INFO 2026-06-08 09:34:41 MarkDuplicates Read 168,000,000 records. Elapsed time: 00:04:27s. Time for last 1,000,000: 1s. Last read position: chr4:8,227,961
INFO 2026-06-08 09:34:41 MarkDuplicates Tracking 1216511 as yet unmatched pairs. 32151 records in RAM.
INFO 2026-06-08 09:34:42 MarkDuplicates Read 169,000,000 records. Elapsed time: 00:04:29s. Time for last 1,000,000: 1s. Last read position: chr4:26,430,707
INFO 2026-06-08 09:34:42 MarkDuplicates Tracking 1214070 as yet unmatched pairs. 29695 records in RAM.
INFO 2026-06-08 09:34:44 MarkDuplicates Read 170,000,000 records. Elapsed time: 00:04:30s. Time for last 1,000,000: 1s. Last read position: chr4:48,849,855
INFO 2026-06-08 09:34:44 MarkDuplicates Tracking 1211973 as yet unmatched pairs. 27557 records in RAM.
INFO 2026-06-08 09:34:45 MarkDuplicates Read 171,000,000 records. Elapsed time: 00:04:32s. Time for last 1,000,000: 1s. Last read position: chr4:56,932,062
INFO 2026-06-08 09:34:45 MarkDuplicates Tracking 1209658 as yet unmatched pairs. 25213 records in RAM.
INFO 2026-06-08 09:34:47 MarkDuplicates Read 172,000,000 records. Elapsed time: 00:04:33s. Time for last 1,000,000: 1s. Last read position: chr4:76,741,284
INFO 2026-06-08 09:34:47 MarkDuplicates Tracking 1206568 as yet unmatched pairs. 22092 records in RAM.
INFO 2026-06-08 09:34:49 MarkDuplicates Read 173,000,000 records. Elapsed time: 00:04:35s. Time for last 1,000,000: 1s. Last read position: chr4:84,796,666
INFO 2026-06-08 09:34:49 MarkDuplicates Tracking 1204266 as yet unmatched pairs. 19756 records in RAM.
INFO 2026-06-08 09:34:50 MarkDuplicates Read 174,000,000 records. Elapsed time: 00:04:37s. Time for last 1,000,000: 1s. Last read position: chr4:90,838,790
INFO 2026-06-08 09:34:50 MarkDuplicates Tracking 1201802 as yet unmatched pairs. 17270 records in RAM.
INFO 2026-06-08 09:34:51 MarkDuplicates Read 175,000,000 records. Elapsed time: 00:04:38s. Time for last 1,000,000: 1s. Last read position: chr4:108,621,949
INFO 2026-06-08 09:34:51 MarkDuplicates Tracking 1199760 as yet unmatched pairs. 15195 records in RAM.
INFO 2026-06-08 09:34:53 MarkDuplicates Read 176,000,000 records. Elapsed time: 00:04:40s. Time for last 1,000,000: 1s. Last read position: chr4:121,671,590
INFO 2026-06-08 09:34:53 MarkDuplicates Tracking 1198470 as yet unmatched pairs. 13881 records in RAM.
INFO 2026-06-08 09:34:54 MarkDuplicates Read 177,000,000 records. Elapsed time: 00:04:41s. Time for last 1,000,000: 1s. Last read position: chr4:137,521,305
INFO 2026-06-08 09:34:54 MarkDuplicates Tracking 1195729 as yet unmatched pairs. 11120 records in RAM.
INFO 2026-06-08 09:34:56 MarkDuplicates Read 178,000,000 records. Elapsed time: 00:04:42s. Time for last 1,000,000: 1s. Last read position: chr4:150,487,829
INFO 2026-06-08 09:34:56 MarkDuplicates Tracking 1192121 as yet unmatched pairs. 7479 records in RAM.
INFO 2026-06-08 09:34:57 MarkDuplicates Read 179,000,000 records. Elapsed time: 00:04:44s. Time for last 1,000,000: 1s. Last read position: chr4:168,877,973
INFO 2026-06-08 09:34:57 MarkDuplicates Tracking 1189988 as yet unmatched pairs. 5325 records in RAM.
INFO 2026-06-08 09:34:59 MarkDuplicates Read 180,000,000 records. Elapsed time: 00:04:45s. Time for last 1,000,000: 1s. Last read position: chr4:186,606,163
INFO 2026-06-08 09:34:59 MarkDuplicates Tracking 1187829 as yet unmatched pairs. 3133 records in RAM.
INFO 2026-06-08 09:35:01 MarkDuplicates Read 181,000,000 records. Elapsed time: 00:04:48s. Time for last 1,000,000: 2s. Last read position: chr5:884,020
INFO 2026-06-08 09:35:01 MarkDuplicates Tracking 1184531 as yet unmatched pairs. 79166 records in RAM.
INFO 2026-06-08 09:35:03 MarkDuplicates Read 182,000,000 records. Elapsed time: 00:04:49s. Time for last 1,000,000: 1s. Last read position: chr5:14,297,241
INFO 2026-06-08 09:35:03 MarkDuplicates Tracking 1182503 as yet unmatched pairs. 77115 records in RAM.
INFO 2026-06-08 09:35:04 MarkDuplicates Read 183,000,000 records. Elapsed time: 00:04:51s. Time for last 1,000,000: 1s. Last read position: chr5:14,498,132
INFO 2026-06-08 09:35:04 MarkDuplicates Tracking 1179009 as yet unmatched pairs. 73612 records in RAM.
INFO 2026-06-08 09:35:06 MarkDuplicates Read 184,000,000 records. Elapsed time: 00:04:52s. Time for last 1,000,000: 1s. Last read position: chr5:32,599,057
INFO 2026-06-08 09:35:06 MarkDuplicates Tracking 1176907 as yet unmatched pairs. 71469 records in RAM.
INFO 2026-06-08 09:35:08 MarkDuplicates Read 185,000,000 records. Elapsed time: 00:04:54s. Time for last 1,000,000: 2s. Last read position: chr5:40,681,161
INFO 2026-06-08 09:35:08 MarkDuplicates Tracking 1174238 as yet unmatched pairs. 68776 records in RAM.
INFO 2026-06-08 09:35:09 MarkDuplicates Read 186,000,000 records. Elapsed time: 00:04:56s. Time for last 1,000,000: 1s. Last read position: chr5:55,160,377
INFO 2026-06-08 09:35:09 MarkDuplicates Tracking 1172353 as yet unmatched pairs. 66876 records in RAM.
INFO 2026-06-08 09:35:11 MarkDuplicates Read 187,000,000 records. Elapsed time: 00:04:57s. Time for last 1,000,000: 1s. Last read position: chr5:62,366,464
INFO 2026-06-08 09:35:11 MarkDuplicates Tracking 1168737 as yet unmatched pairs. 63228 records in RAM.
INFO 2026-06-08 09:35:12 MarkDuplicates Read 188,000,000 records. Elapsed time: 00:04:58s. Time for last 1,000,000: 1s. Last read position: chr5:72,194,376
INFO 2026-06-08 09:35:12 MarkDuplicates Tracking 1167411 as yet unmatched pairs. 61872 records in RAM.
INFO 2026-06-08 09:35:14 MarkDuplicates Read 189,000,000 records. Elapsed time: 00:05:00s. Time for last 1,000,000: 1s. Last read position: chr5:79,649,104
INFO 2026-06-08 09:35:14 MarkDuplicates Tracking 1165006 as yet unmatched pairs. 59457 records in RAM.
INFO 2026-06-08 09:35:15 MarkDuplicates Read 190,000,000 records. Elapsed time: 00:05:02s. Time for last 1,000,000: 1s. Last read position: chr5:83,490,163
INFO 2026-06-08 09:35:15 MarkDuplicates Tracking 1164171 as yet unmatched pairs. 58598 records in RAM.
INFO 2026-06-08 09:35:17 MarkDuplicates Read 191,000,000 records. Elapsed time: 00:05:03s. Time for last 1,000,000: 1s. Last read position: chr5:83,541,877
INFO 2026-06-08 09:35:17 MarkDuplicates Tracking 1161074 as yet unmatched pairs. 55491 records in RAM.
INFO 2026-06-08 09:35:18 MarkDuplicates Read 192,000,000 records. Elapsed time: 00:05:05s. Time for last 1,000,000: 1s. Last read position: chr5:98,779,791
INFO 2026-06-08 09:35:18 MarkDuplicates Tracking 1157599 as yet unmatched pairs. 51987 records in RAM.
INFO 2026-06-08 09:35:20 MarkDuplicates Read 193,000,000 records. Elapsed time: 00:05:06s. Time for last 1,000,000: 1s. Last read position: chr5:119,247,014
INFO 2026-06-08 09:35:20 MarkDuplicates Tracking 1154951 as yet unmatched pairs. 49299 records in RAM.
INFO 2026-06-08 09:35:21 MarkDuplicates Read 194,000,000 records. Elapsed time: 00:05:08s. Time for last 1,000,000: 1s. Last read position: chr5:132,825,800
INFO 2026-06-08 09:35:21 MarkDuplicates Tracking 1152091 as yet unmatched pairs. 46419 records in RAM.
INFO 2026-06-08 09:35:23 MarkDuplicates Read 195,000,000 records. Elapsed time: 00:05:09s. Time for last 1,000,000: 1s. Last read position: chr5:136,061,520
INFO 2026-06-08 09:35:23 MarkDuplicates Tracking 1155618 as yet unmatched pairs. 49931 records in RAM.
INFO 2026-06-08 09:35:24 MarkDuplicates Read 196,000,000 records. Elapsed time: 00:05:11s. Time for last 1,000,000: 1s. Last read position: chr5:138,468,259
INFO 2026-06-08 09:35:24 MarkDuplicates Tracking 1146993 as yet unmatched pairs. 41294 records in RAM.
INFO 2026-06-08 09:35:26 MarkDuplicates Read 197,000,000 records. Elapsed time: 00:05:12s. Time for last 1,000,000: 1s. Last read position: chr5:140,828,421
INFO 2026-06-08 09:35:26 MarkDuplicates Tracking 1144364 as yet unmatched pairs. 38633 records in RAM.
INFO 2026-06-08 09:35:27 MarkDuplicates Read 198,000,000 records. Elapsed time: 00:05:14s. Time for last 1,000,000: 1s. Last read position: chr5:142,314,425
INFO 2026-06-08 09:35:27 MarkDuplicates Tracking 1147486 as yet unmatched pairs. 41728 records in RAM.
INFO 2026-06-08 09:35:29 MarkDuplicates Read 199,000,000 records. Elapsed time: 00:05:15s. Time for last 1,000,000: 1s. Last read position: chr5:149,496,799
INFO 2026-06-08 09:35:29 MarkDuplicates Tracking 1139719 as yet unmatched pairs. 33922 records in RAM.
INFO 2026-06-08 09:35:31 MarkDuplicates Read 200,000,000 records. Elapsed time: 00:05:17s. Time for last 1,000,000: 1s. Last read position: chr5:150,117,819
INFO 2026-06-08 09:35:31 MarkDuplicates Tracking 1153977 as yet unmatched pairs. 48161 records in RAM.
INFO 2026-06-08 09:35:32 MarkDuplicates Read 201,000,000 records. Elapsed time: 00:05:19s. Time for last 1,000,000: 1s. Last read position: chr5:150,124,335
INFO 2026-06-08 09:35:32 MarkDuplicates Tracking 1144357 as yet unmatched pairs. 38528 records in RAM.
INFO 2026-06-08 09:35:34 MarkDuplicates Read 202,000,000 records. Elapsed time: 00:05:20s. Time for last 1,000,000: 1s. Last read position: chr5:150,133,721
INFO 2026-06-08 09:35:34 MarkDuplicates Tracking 1142393 as yet unmatched pairs. 36555 records in RAM.
INFO 2026-06-08 09:35:35 MarkDuplicates Read 203,000,000 records. Elapsed time: 00:05:21s. Time for last 1,000,000: 1s. Last read position: chr5:150,402,171
INFO 2026-06-08 09:35:35 MarkDuplicates Tracking 1138846 as yet unmatched pairs. 32999 records in RAM.
INFO 2026-06-08 09:35:37 MarkDuplicates Read 204,000,000 records. Elapsed time: 00:05:23s. Time for last 1,000,000: 1s. Last read position: chr5:150,711,107
INFO 2026-06-08 09:35:37 MarkDuplicates Tracking 1124633 as yet unmatched pairs. 18781 records in RAM.
INFO 2026-06-08 09:35:38 MarkDuplicates Read 205,000,000 records. Elapsed time: 00:05:25s. Time for last 1,000,000: 1s. Last read position: chr5:154,053,133
INFO 2026-06-08 09:35:38 MarkDuplicates Tracking 1121954 as yet unmatched pairs. 16074 records in RAM.
INFO 2026-06-08 09:35:40 MarkDuplicates Read 206,000,000 records. Elapsed time: 00:05:26s. Time for last 1,000,000: 1s. Last read position: chr5:168,494,605
INFO 2026-06-08 09:35:40 MarkDuplicates Tracking 1119637 as yet unmatched pairs. 13734 records in RAM.
INFO 2026-06-08 09:35:41 MarkDuplicates Read 207,000,000 records. Elapsed time: 00:05:28s. Time for last 1,000,000: 1s. Last read position: chr5:171,400,863
INFO 2026-06-08 09:35:41 MarkDuplicates Tracking 1123609 as yet unmatched pairs. 17689 records in RAM.
INFO 2026-06-08 09:35:43 MarkDuplicates Read 208,000,000 records. Elapsed time: 00:05:29s. Time for last 1,000,000: 1s. Last read position: chr5:177,211,427
INFO 2026-06-08 09:35:43 MarkDuplicates Tracking 1114704 as yet unmatched pairs. 8773 records in RAM.
INFO 2026-06-08 09:35:45 MarkDuplicates Read 209,000,000 records. Elapsed time: 00:05:31s. Time for last 1,000,000: 1s. Last read position: chr5:179,705,679
INFO 2026-06-08 09:35:45 MarkDuplicates Tracking 1113536 as yet unmatched pairs. 7588 records in RAM.
INFO 2026-06-08 09:35:46 MarkDuplicates Read 210,000,000 records. Elapsed time: 00:05:33s. Time for last 1,000,000: 1s. Last read position: chr5:179,824,229
INFO 2026-06-08 09:35:46 MarkDuplicates Tracking 1120393 as yet unmatched pairs. 14441 records in RAM.
INFO 2026-06-08 09:35:48 MarkDuplicates Read 211,000,000 records. Elapsed time: 00:05:34s. Time for last 1,000,000: 1s. Last read position: chr5:181,243,791
INFO 2026-06-08 09:35:48 MarkDuplicates Tracking 1105977 as yet unmatched pairs. 16 records in RAM.
INFO 2026-06-08 09:35:50 MarkDuplicates Read 212,000,000 records. Elapsed time: 00:05:36s. Time for last 1,000,000: 2s. Last read position: chr6:7,884,454
INFO 2026-06-08 09:35:50 MarkDuplicates Tracking 1103860 as yet unmatched pairs. 73571 records in RAM.
INFO 2026-06-08 09:35:51 MarkDuplicates Read 213,000,000 records. Elapsed time: 00:05:38s. Time for last 1,000,000: 1s. Last read position: chr6:21,594,515
INFO 2026-06-08 09:35:51 MarkDuplicates Tracking 1100998 as yet unmatched pairs. 70689 records in RAM.
INFO 2026-06-08 09:35:53 MarkDuplicates Read 214,000,000 records. Elapsed time: 00:05:39s. Time for last 1,000,000: 1s. Last read position: chr6:26,234,317
INFO 2026-06-08 09:35:53 MarkDuplicates Tracking 1098920 as yet unmatched pairs. 68598 records in RAM.
INFO 2026-06-08 09:35:54 MarkDuplicates Read 215,000,000 records. Elapsed time: 00:05:40s. Time for last 1,000,000: 1s. Last read position: chr6:27,865,508
INFO 2026-06-08 09:35:54 MarkDuplicates Tracking 1096273 as yet unmatched pairs. 65944 records in RAM.
INFO 2026-06-08 09:35:55 MarkDuplicates Read 216,000,000 records. Elapsed time: 00:05:42s. Time for last 1,000,000: 1s. Last read position: chr6:30,489,958
INFO 2026-06-08 09:35:55 MarkDuplicates Tracking 1094252 as yet unmatched pairs. 63910 records in RAM.
INFO 2026-06-08 09:35:57 MarkDuplicates Read 217,000,000 records. Elapsed time: 00:05:43s. Time for last 1,000,000: 1s. Last read position: chr6:31,270,399
INFO 2026-06-08 09:35:57 MarkDuplicates Tracking 1092526 as yet unmatched pairs. 62167 records in RAM.
INFO 2026-06-08 09:35:58 MarkDuplicates Read 218,000,000 records. Elapsed time: 00:05:45s. Time for last 1,000,000: 1s. Last read position: chr6:31,642,129
INFO 2026-06-08 09:35:58 MarkDuplicates Tracking 1088592 as yet unmatched pairs. 58225 records in RAM.
INFO 2026-06-08 09:36:00 MarkDuplicates Read 219,000,000 records. Elapsed time: 00:05:46s. Time for last 1,000,000: 1s. Last read position: chr6:31,816,470
INFO 2026-06-08 09:36:00 MarkDuplicates Tracking 1086319 as yet unmatched pairs. 55948 records in RAM.
INFO 2026-06-08 09:36:01 MarkDuplicates Read 220,000,000 records. Elapsed time: 00:05:47s. Time for last 1,000,000: 1s. Last read position: chr6:31,828,568
INFO 2026-06-08 09:36:01 MarkDuplicates Tracking 1086938 as yet unmatched pairs. 56557 records in RAM.
INFO 2026-06-08 09:36:02 MarkDuplicates Read 221,000,000 records. Elapsed time: 00:05:49s. Time for last 1,000,000: 1s. Last read position: chr6:31,967,116
INFO 2026-06-08 09:36:02 MarkDuplicates Tracking 1082698 as yet unmatched pairs. 52307 records in RAM.
INFO 2026-06-08 09:36:04 MarkDuplicates Read 222,000,000 records. Elapsed time: 00:05:50s. Time for last 1,000,000: 1s. Last read position: chr6:32,977,774
INFO 2026-06-08 09:36:04 MarkDuplicates Tracking 1080487 as yet unmatched pairs. 50085 records in RAM.
INFO 2026-06-08 09:36:05 MarkDuplicates Read 223,000,000 records. Elapsed time: 00:05:52s. Time for last 1,000,000: 1s. Last read position: chr6:33,432,067
INFO 2026-06-08 09:36:05 MarkDuplicates Tracking 1077458 as yet unmatched pairs. 47041 records in RAM.
INFO 2026-06-08 09:36:07 MarkDuplicates Read 224,000,000 records. Elapsed time: 00:05:53s. Time for last 1,000,000: 1s. Last read position: chr6:38,116,603
INFO 2026-06-08 09:36:07 MarkDuplicates Tracking 1074873 as yet unmatched pairs. 44435 records in RAM.
INFO 2026-06-08 09:36:08 MarkDuplicates Read 225,000,000 records. Elapsed time: 00:05:55s. Time for last 1,000,000: 1s. Last read position: chr6:42,830,140
INFO 2026-06-08 09:36:08 MarkDuplicates Tracking 1071762 as yet unmatched pairs. 41297 records in RAM.
INFO 2026-06-08 09:36:10 MarkDuplicates Read 226,000,000 records. Elapsed time: 00:05:57s. Time for last 1,000,000: 1s. Last read position: chr6:43,770,752
INFO 2026-06-08 09:36:10 MarkDuplicates Tracking 1070731 as yet unmatched pairs. 40258 records in RAM.
INFO 2026-06-08 09:36:12 MarkDuplicates Read 227,000,000 records. Elapsed time: 00:05:58s. Time for last 1,000,000: 1s. Last read position: chr6:47,253,496
INFO 2026-06-08 09:36:12 MarkDuplicates Tracking 1066018 as yet unmatched pairs. 35535 records in RAM.
INFO 2026-06-08 09:36:13 MarkDuplicates Read 228,000,000 records. Elapsed time: 00:06:00s. Time for last 1,000,000: 1s. Last read position: chr6:63,576,865
INFO 2026-06-08 09:36:13 MarkDuplicates Tracking 1064365 as yet unmatched pairs. 33845 records in RAM.
INFO 2026-06-08 09:36:15 MarkDuplicates Read 229,000,000 records. Elapsed time: 00:06:01s. Time for last 1,000,000: 1s. Last read position: chr6:75,147,702
INFO 2026-06-08 09:36:15 MarkDuplicates Tracking 1062319 as yet unmatched pairs. 31777 records in RAM.
INFO 2026-06-08 09:36:16 MarkDuplicates Read 230,000,000 records. Elapsed time: 00:06:03s. Time for last 1,000,000: 1s. Last read position: chr6:82,214,424
INFO 2026-06-08 09:36:16 MarkDuplicates Tracking 1059017 as yet unmatched pairs. 28462 records in RAM.
INFO 2026-06-08 09:36:18 MarkDuplicates Read 231,000,000 records. Elapsed time: 00:06:04s. Time for last 1,000,000: 1s. Last read position: chr6:89,699,666
INFO 2026-06-08 09:36:18 MarkDuplicates Tracking 1056326 as yet unmatched pairs. 25749 records in RAM.
INFO 2026-06-08 09:36:19 MarkDuplicates Read 232,000,000 records. Elapsed time: 00:06:06s. Time for last 1,000,000: 1s. Last read position: chr6:107,902,861
INFO 2026-06-08 09:36:19 MarkDuplicates Tracking 1053951 as yet unmatched pairs. 23358 records in RAM.
INFO 2026-06-08 09:36:21 MarkDuplicates Read 233,000,000 records. Elapsed time: 00:06:07s. Time for last 1,000,000: 1s. Last read position: chr6:113,859,787
INFO 2026-06-08 09:36:21 MarkDuplicates Tracking 1051309 as yet unmatched pairs. 20694 records in RAM.
INFO 2026-06-08 09:36:22 MarkDuplicates Read 234,000,000 records. Elapsed time: 00:06:09s. Time for last 1,000,000: 1s. Last read position: chr6:127,514,899
INFO 2026-06-08 09:36:22 MarkDuplicates Tracking 1048286 as yet unmatched pairs. 17660 records in RAM.
INFO 2026-06-08 09:36:24 MarkDuplicates Read 235,000,000 records. Elapsed time: 00:06:10s. Time for last 1,000,000: 1s. Last read position: chr6:132,475,614
INFO 2026-06-08 09:36:24 MarkDuplicates Tracking 1046131 as yet unmatched pairs. 15479 records in RAM.
INFO 2026-06-08 09:36:25 MarkDuplicates Read 236,000,000 records. Elapsed time: 00:06:11s. Time for last 1,000,000: 1s. Last read position: chr6:142,773,821
INFO 2026-06-08 09:36:25 MarkDuplicates Tracking 1043680 as yet unmatched pairs. 13017 records in RAM.
INFO 2026-06-08 09:36:27 MarkDuplicates Read 237,000,000 records. Elapsed time: 00:06:13s. Time for last 1,000,000: 1s. Last read position: chr6:148,543,695
INFO 2026-06-08 09:36:27 MarkDuplicates Tracking 1041186 as yet unmatched pairs. 10498 records in RAM.
INFO 2026-06-08 09:36:28 MarkDuplicates Read 238,000,000 records. Elapsed time: 00:06:15s. Time for last 1,000,000: 1s. Last read position: chr6:154,822,398
INFO 2026-06-08 09:36:28 MarkDuplicates Tracking 1038591 as yet unmatched pairs. 7877 records in RAM.
INFO 2026-06-08 09:36:30 MarkDuplicates Read 239,000,000 records. Elapsed time: 00:06:16s. Time for last 1,000,000: 1s. Last read position: chr6:159,991,232
INFO 2026-06-08 09:36:30 MarkDuplicates Tracking 1036806 as yet unmatched pairs. 6082 records in RAM.
INFO 2026-06-08 09:36:32 MarkDuplicates Read 240,000,000 records. Elapsed time: 00:06:18s. Time for last 1,000,000: 1s. Last read position: chr6:163,566,639
INFO 2026-06-08 09:36:32 MarkDuplicates Tracking 1040373 as yet unmatched pairs. 9644 records in RAM.
INFO 2026-06-08 09:36:34 MarkDuplicates Read 241,000,000 records. Elapsed time: 00:06:20s. Time for last 1,000,000: 2s. Last read position: chr7:193,517
INFO 2026-06-08 09:36:34 MarkDuplicates Tracking 1030895 as yet unmatched pairs. 83914 records in RAM.
INFO 2026-06-08 09:36:35 MarkDuplicates Read 242,000,000 records. Elapsed time: 00:06:21s. Time for last 1,000,000: 1s. Last read position: chr7:2,255,017
INFO 2026-06-08 09:36:35 MarkDuplicates Tracking 1027144 as yet unmatched pairs. 80142 records in RAM.
INFO 2026-06-08 09:36:37 MarkDuplicates Read 243,000,000 records. Elapsed time: 00:06:23s. Time for last 1,000,000: 1s. Last read position: chr7:5,314,984
INFO 2026-06-08 09:36:37 MarkDuplicates Tracking 1024936 as yet unmatched pairs. 77918 records in RAM.
INFO 2026-06-08 09:36:38 MarkDuplicates Read 244,000,000 records. Elapsed time: 00:06:25s. Time for last 1,000,000: 1s. Last read position: chr7:5,528,020
INFO 2026-06-08 09:36:38 MarkDuplicates Tracking 1035040 as yet unmatched pairs. 88008 records in RAM.
INFO 2026-06-08 09:36:40 MarkDuplicates Read 245,000,000 records. Elapsed time: 00:06:26s. Time for last 1,000,000: 1s. Last read position: chr7:5,529,556
INFO 2026-06-08 09:36:40 MarkDuplicates Tracking 1022990 as yet unmatched pairs. 75949 records in RAM.
INFO 2026-06-08 09:36:41 MarkDuplicates Read 246,000,000 records. Elapsed time: 00:06:28s. Time for last 1,000,000: 1s. Last read position: chr7:6,690,754
INFO 2026-06-08 09:36:41 MarkDuplicates Tracking 1015380 as yet unmatched pairs. 68324 records in RAM.
INFO 2026-06-08 09:36:43 MarkDuplicates Read 247,000,000 records. Elapsed time: 00:06:29s. Time for last 1,000,000: 1s. Last read position: chr7:16,636,358
INFO 2026-06-08 09:36:43 MarkDuplicates Tracking 1012884 as yet unmatched pairs. 65795 records in RAM.
INFO 2026-06-08 09:36:45 MarkDuplicates Read 248,000,000 records. Elapsed time: 00:06:31s. Time for last 1,000,000: 1s. Last read position: chr7:26,200,486
INFO 2026-06-08 09:36:45 MarkDuplicates Tracking 1012252 as yet unmatched pairs. 65131 records in RAM.
INFO 2026-06-08 09:36:46 MarkDuplicates Read 249,000,000 records. Elapsed time: 00:06:32s. Time for last 1,000,000: 1s. Last read position: chr7:30,612,143
INFO 2026-06-08 09:36:46 MarkDuplicates Tracking 1008484 as yet unmatched pairs. 61322 records in RAM.
INFO 2026-06-08 09:36:48 MarkDuplicates Read 250,000,000 records. Elapsed time: 00:06:34s. Time for last 1,000,000: 1s. Last read position: chr7:39,696,823
INFO 2026-06-08 09:36:48 MarkDuplicates Tracking 1004974 as yet unmatched pairs. 57806 records in RAM.
INFO 2026-06-08 09:36:49 MarkDuplicates Read 251,000,000 records. Elapsed time: 00:06:35s. Time for last 1,000,000: 1s. Last read position: chr7:44,074,032
INFO 2026-06-08 09:36:49 MarkDuplicates Tracking 1002439 as yet unmatched pairs. 55251 records in RAM.
INFO 2026-06-08 09:36:51 MarkDuplicates Read 252,000,000 records. Elapsed time: 00:06:37s. Time for last 1,000,000: 1s. Last read position: chr7:45,083,391
INFO 2026-06-08 09:36:51 MarkDuplicates Tracking 999296 as yet unmatched pairs. 52101 records in RAM.
INFO 2026-06-08 09:36:52 MarkDuplicates Read 253,000,000 records. Elapsed time: 00:06:38s. Time for last 1,000,000: 1s. Last read position: chr7:55,146,651
INFO 2026-06-08 09:36:52 MarkDuplicates Tracking 999903 as yet unmatched pairs. 52692 records in RAM.
INFO 2026-06-08 09:36:53 MarkDuplicates Read 254,000,000 records. Elapsed time: 00:06:40s. Time for last 1,000,000: 1s. Last read position: chr7:63,893,872
INFO 2026-06-08 09:36:53 MarkDuplicates Tracking 993420 as yet unmatched pairs. 46186 records in RAM.
INFO 2026-06-08 09:36:55 MarkDuplicates Read 255,000,000 records. Elapsed time: 00:06:41s. Time for last 1,000,000: 1s. Last read position: chr7:73,700,753
INFO 2026-06-08 09:36:55 MarkDuplicates Tracking 991657 as yet unmatched pairs. 44409 records in RAM.
INFO 2026-06-08 09:36:56 MarkDuplicates Read 256,000,000 records. Elapsed time: 00:06:43s. Time for last 1,000,000: 1s. Last read position: chr7:75,888,306
INFO 2026-06-08 09:36:56 MarkDuplicates Tracking 989867 as yet unmatched pairs. 42613 records in RAM.
INFO 2026-06-08 09:36:58 MarkDuplicates Read 257,000,000 records. Elapsed time: 00:06:44s. Time for last 1,000,000: 1s. Last read position: chr7:81,743,438
INFO 2026-06-08 09:36:58 MarkDuplicates Tracking 986940 as yet unmatched pairs. 39671 records in RAM.
INFO 2026-06-08 09:36:59 MarkDuplicates Read 258,000,000 records. Elapsed time: 00:06:46s. Time for last 1,000,000: 1s. Last read position: chr7:92,491,367
INFO 2026-06-08 09:36:59 MarkDuplicates Tracking 984458 as yet unmatched pairs. 37172 records in RAM.
INFO 2026-06-08 09:37:01 MarkDuplicates Read 259,000,000 records. Elapsed time: 00:06:47s. Time for last 1,000,000: 1s. Last read position: chr7:94,410,246
INFO 2026-06-08 09:37:01 MarkDuplicates Tracking 986576 as yet unmatched pairs. 39279 records in RAM.
INFO 2026-06-08 09:37:02 MarkDuplicates Read 260,000,000 records. Elapsed time: 00:06:49s. Time for last 1,000,000: 1s. Last read position: chr7:94,425,813
INFO 2026-06-08 09:37:02 MarkDuplicates Tracking 983056 as yet unmatched pairs. 35740 records in RAM.
INFO 2026-06-08 09:37:04 MarkDuplicates Read 261,000,000 records. Elapsed time: 00:06:50s. Time for last 1,000,000: 1s. Last read position: chr7:96,694,822
INFO 2026-06-08 09:37:04 MarkDuplicates Tracking 977257 as yet unmatched pairs. 29925 records in RAM.
INFO 2026-06-08 09:37:06 MarkDuplicates Read 262,000,000 records. Elapsed time: 00:06:52s. Time for last 1,000,000: 1s. Last read position: chr7:100,205,046
INFO 2026-06-08 09:37:06 MarkDuplicates Tracking 973467 as yet unmatched pairs. 26125 records in RAM.
INFO 2026-06-08 09:37:07 MarkDuplicates Read 263,000,000 records. Elapsed time: 00:06:54s. Time for last 1,000,000: 1s. Last read position: chr7:101,088,087
INFO 2026-06-08 09:37:07 MarkDuplicates Tracking 970729 as yet unmatched pairs. 23378 records in RAM.
INFO 2026-06-08 09:37:08 MarkDuplicates Read 264,000,000 records. Elapsed time: 00:06:55s. Time for last 1,000,000: 1s. Last read position: chr7:102,593,063
INFO 2026-06-08 09:37:08 MarkDuplicates Tracking 970102 as yet unmatched pairs. 22738 records in RAM.
INFO 2026-06-08 09:37:10 MarkDuplicates Read 265,000,000 records. Elapsed time: 00:06:56s. Time for last 1,000,000: 1s. Last read position: chr7:107,580,779
INFO 2026-06-08 09:37:10 MarkDuplicates Tracking 967180 as yet unmatched pairs. 19787 records in RAM.
INFO 2026-06-08 09:37:11 MarkDuplicates Read 266,000,000 records. Elapsed time: 00:06:58s. Time for last 1,000,000: 1s. Last read position: chr7:111,868,000
INFO 2026-06-08 09:37:11 MarkDuplicates Tracking 964519 as yet unmatched pairs. 17116 records in RAM.
INFO 2026-06-08 09:37:13 MarkDuplicates Read 267,000,000 records. Elapsed time: 00:06:59s. Time for last 1,000,000: 1s. Last read position: chr7:127,807,529
INFO 2026-06-08 09:37:13 MarkDuplicates Tracking 965353 as yet unmatched pairs. 17930 records in RAM.
INFO 2026-06-08 09:37:14 MarkDuplicates Read 268,000,000 records. Elapsed time: 00:07:01s. Time for last 1,000,000: 1s. Last read position: chr7:130,116,470
INFO 2026-06-08 09:37:14 MarkDuplicates Tracking 959324 as yet unmatched pairs. 11881 records in RAM.
INFO 2026-06-08 09:37:16 MarkDuplicates Read 269,000,000 records. Elapsed time: 00:07:02s. Time for last 1,000,000: 1s. Last read position: chr7:137,908,280
INFO 2026-06-08 09:37:16 MarkDuplicates Tracking 957773 as yet unmatched pairs. 10310 records in RAM.
INFO 2026-06-08 09:37:17 MarkDuplicates Read 270,000,000 records. Elapsed time: 00:07:04s. Time for last 1,000,000: 1s. Last read position: chr7:143,356,840
INFO 2026-06-08 09:37:17 MarkDuplicates Tracking 953999 as yet unmatched pairs. 6526 records in RAM.
INFO 2026-06-08 09:37:19 MarkDuplicates Read 271,000,000 records. Elapsed time: 00:07:05s. Time for last 1,000,000: 1s. Last read position: chr7:150,628,047
INFO 2026-06-08 09:37:19 MarkDuplicates Tracking 951477 as yet unmatched pairs. 3994 records in RAM.
INFO 2026-06-08 09:37:20 MarkDuplicates Read 272,000,000 records. Elapsed time: 00:07:07s. Time for last 1,000,000: 1s. Last read position: chr7:155,739,891
INFO 2026-06-08 09:37:20 MarkDuplicates Tracking 948727 as yet unmatched pairs. 1228 records in RAM.
INFO 2026-06-08 09:37:22 MarkDuplicates Read 273,000,000 records. Elapsed time: 00:07:09s. Time for last 1,000,000: 2s. Last read position: chr8:11,845,719
INFO 2026-06-08 09:37:22 MarkDuplicates Tracking 952028 as yet unmatched pairs. 59187 records in RAM.
INFO 2026-06-08 09:37:24 MarkDuplicates Read 274,000,000 records. Elapsed time: 00:07:10s. Time for last 1,000,000: 1s. Last read position: chr8:17,964,679
INFO 2026-06-08 09:37:24 MarkDuplicates Tracking 944015 as yet unmatched pairs. 51130 records in RAM.
INFO 2026-06-08 09:37:26 MarkDuplicates Read 275,000,000 records. Elapsed time: 00:07:12s. Time for last 1,000,000: 1s. Last read position: chr8:22,606,627
INFO 2026-06-08 09:37:26 MarkDuplicates Tracking 942429 as yet unmatched pairs. 49511 records in RAM.
INFO 2026-06-08 09:37:27 MarkDuplicates Read 276,000,000 records. Elapsed time: 00:07:13s. Time for last 1,000,000: 1s. Last read position: chr8:23,328,429
INFO 2026-06-08 09:37:27 MarkDuplicates Tracking 940008 as yet unmatched pairs. 47079 records in RAM.
INFO 2026-06-08 09:37:29 MarkDuplicates Read 277,000,000 records. Elapsed time: 00:07:15s. Time for last 1,000,000: 1s. Last read position: chr8:29,340,025
INFO 2026-06-08 09:37:29 MarkDuplicates Tracking 935097 as yet unmatched pairs. 42151 records in RAM.
INFO 2026-06-08 09:37:30 MarkDuplicates Read 278,000,000 records. Elapsed time: 00:07:16s. Time for last 1,000,000: 1s. Last read position: chr8:38,331,468
INFO 2026-06-08 09:37:30 MarkDuplicates Tracking 934000 as yet unmatched pairs. 41047 records in RAM.
INFO 2026-06-08 09:37:32 MarkDuplicates Read 279,000,000 records. Elapsed time: 00:07:18s. Time for last 1,000,000: 1s. Last read position: chr8:38,421,800
INFO 2026-06-08 09:37:32 MarkDuplicates Tracking 932360 as yet unmatched pairs. 39401 records in RAM.
INFO 2026-06-08 09:37:33 MarkDuplicates Read 280,000,000 records. Elapsed time: 00:07:20s. Time for last 1,000,000: 1s. Last read position: chr8:39,090,078
INFO 2026-06-08 09:37:33 MarkDuplicates Tracking 927983 as yet unmatched pairs. 35017 records in RAM.
INFO 2026-06-08 09:37:35 MarkDuplicates Read 281,000,000 records. Elapsed time: 00:07:21s. Time for last 1,000,000: 1s. Last read position: chr8:47,863,491
INFO 2026-06-08 09:37:35 MarkDuplicates Tracking 925203 as yet unmatched pairs. 32226 records in RAM.
INFO 2026-06-08 09:37:36 MarkDuplicates Read 282,000,000 records. Elapsed time: 00:07:23s. Time for last 1,000,000: 1s. Last read position: chr8:60,584,262
INFO 2026-06-08 09:37:36 MarkDuplicates Tracking 922610 as yet unmatched pairs. 29598 records in RAM.
INFO 2026-06-08 09:37:38 MarkDuplicates Read 283,000,000 records. Elapsed time: 00:07:24s. Time for last 1,000,000: 1s. Last read position: chr8:70,148,288
INFO 2026-06-08 09:37:38 MarkDuplicates Tracking 920739 as yet unmatched pairs. 27714 records in RAM.
INFO 2026-06-08 09:37:40 MarkDuplicates Read 284,000,000 records. Elapsed time: 00:07:26s. Time for last 1,000,000: 1s. Last read position: chr8:86,474,130
INFO 2026-06-08 09:37:40 MarkDuplicates Tracking 917296 as yet unmatched pairs. 24264 records in RAM.
INFO 2026-06-08 09:37:41 MarkDuplicates Read 285,000,000 records. Elapsed time: 00:07:27s. Time for last 1,000,000: 1s. Last read position: chr8:97,691,010
INFO 2026-06-08 09:37:41 MarkDuplicates Tracking 915155 as yet unmatched pairs. 22110 records in RAM.
INFO 2026-06-08 09:37:43 MarkDuplicates Read 286,000,000 records. Elapsed time: 00:07:29s. Time for last 1,000,000: 1s. Last read position: chr8:100,948,812
INFO 2026-06-08 09:37:43 MarkDuplicates Tracking 912271 as yet unmatched pairs. 19212 records in RAM.
INFO 2026-06-08 09:37:44 MarkDuplicates Read 287,000,000 records. Elapsed time: 00:07:30s. Time for last 1,000,000: 1s. Last read position: chr8:108,217,420
INFO 2026-06-08 09:37:44 MarkDuplicates Tracking 910641 as yet unmatched pairs. 17558 records in RAM.
INFO 2026-06-08 09:37:46 MarkDuplicates Read 288,000,000 records. Elapsed time: 00:07:32s. Time for last 1,000,000: 1s. Last read position: chr8:123,475,189
INFO 2026-06-08 09:37:46 MarkDuplicates Tracking 907171 as yet unmatched pairs. 14062 records in RAM.
INFO 2026-06-08 09:37:47 MarkDuplicates Read 289,000,000 records. Elapsed time: 00:07:34s. Time for last 1,000,000: 1s. Last read position: chr8:135,645,098
INFO 2026-06-08 09:37:47 MarkDuplicates Tracking 904545 as yet unmatched pairs. 11416 records in RAM.
INFO 2026-06-08 09:37:49 MarkDuplicates Read 290,000,000 records. Elapsed time: 00:07:35s. Time for last 1,000,000: 1s. Last read position: chr8:143,804,757
INFO 2026-06-08 09:37:49 MarkDuplicates Tracking 901793 as yet unmatched pairs. 8640 records in RAM.
INFO 2026-06-08 09:37:50 MarkDuplicates Read 291,000,000 records. Elapsed time: 00:07:37s. Time for last 1,000,000: 1s. Last read position: chr8:143,932,635
INFO 2026-06-08 09:37:50 MarkDuplicates Tracking 898836 as yet unmatched pairs. 5671 records in RAM.
INFO 2026-06-08 09:37:52 MarkDuplicates Read 292,000,000 records. Elapsed time: 00:07:38s. Time for last 1,000,000: 1s. Last read position: chr8:144,360,610
INFO 2026-06-08 09:37:52 MarkDuplicates Tracking 895172 as yet unmatched pairs. 1994 records in RAM.
INFO 2026-06-08 09:37:54 MarkDuplicates Read 293,000,000 records. Elapsed time: 00:07:40s. Time for last 1,000,000: 2s. Last read position: chr9:6,007,455
INFO 2026-06-08 09:37:54 MarkDuplicates Tracking 892215 as yet unmatched pairs. 45731 records in RAM.
INFO 2026-06-08 09:37:55 MarkDuplicates Read 294,000,000 records. Elapsed time: 00:07:42s. Time for last 1,000,000: 1s. Last read position: chr9:21,007,031
INFO 2026-06-08 09:37:55 MarkDuplicates Tracking 889946 as yet unmatched pairs. 43426 records in RAM.
INFO 2026-06-08 09:37:57 MarkDuplicates Read 295,000,000 records. Elapsed time: 00:07:43s. Time for last 1,000,000: 1s. Last read position: chr9:34,650,379
INFO 2026-06-08 09:37:57 MarkDuplicates Tracking 886860 as yet unmatched pairs. 40321 records in RAM.
INFO 2026-06-08 09:37:59 MarkDuplicates Read 296,000,000 records. Elapsed time: 00:07:45s. Time for last 1,000,000: 1s. Last read position: chr9:36,204,107
INFO 2026-06-08 09:37:59 MarkDuplicates Tracking 885141 as yet unmatched pairs. 38595 records in RAM.
INFO 2026-06-08 09:38:00 MarkDuplicates Read 297,000,000 records. Elapsed time: 00:07:46s. Time for last 1,000,000: 1s. Last read position: chr9:83,971,284
INFO 2026-06-08 09:38:00 MarkDuplicates Tracking 882887 as yet unmatched pairs. 36300 records in RAM.
INFO 2026-06-08 09:38:01 MarkDuplicates Read 298,000,000 records. Elapsed time: 00:07:48s. Time for last 1,000,000: 1s. Last read position: chr9:93,498,856
INFO 2026-06-08 09:38:01 MarkDuplicates Tracking 879534 as yet unmatched pairs. 32921 records in RAM.
INFO 2026-06-08 09:38:03 MarkDuplicates Read 299,000,000 records. Elapsed time: 00:07:49s. Time for last 1,000,000: 1s. Last read position: chr9:104,832,699
INFO 2026-06-08 09:38:03 MarkDuplicates Tracking 877026 as yet unmatched pairs. 30385 records in RAM.
INFO 2026-06-08 09:38:05 MarkDuplicates Read 300,000,000 records. Elapsed time: 00:07:51s. Time for last 1,000,000: 1s. Last read position: chr9:113,267,347
INFO 2026-06-08 09:38:05 MarkDuplicates Tracking 874202 as yet unmatched pairs. 27542 records in RAM.
INFO 2026-06-08 09:38:06 MarkDuplicates Read 301,000,000 records. Elapsed time: 00:07:52s. Time for last 1,000,000: 1s. Last read position: chr9:115,090,622
INFO 2026-06-08 09:38:06 MarkDuplicates Tracking 872408 as yet unmatched pairs. 25738 records in RAM.
INFO 2026-06-08 09:38:08 MarkDuplicates Read 302,000,000 records. Elapsed time: 00:07:54s. Time for last 1,000,000: 1s. Last read position: chr9:125,149,707
INFO 2026-06-08 09:38:08 MarkDuplicates Tracking 869053 as yet unmatched pairs. 22371 records in RAM.
INFO 2026-06-08 09:38:09 MarkDuplicates Read 303,000,000 records. Elapsed time: 00:07:55s. Time for last 1,000,000: 1s. Last read position: chr9:127,523,815
INFO 2026-06-08 09:38:09 MarkDuplicates Tracking 866188 as yet unmatched pairs. 19498 records in RAM.
INFO 2026-06-08 09:38:11 MarkDuplicates Read 304,000,000 records. Elapsed time: 00:07:57s. Time for last 1,000,000: 1s. Last read position: chr9:128,575,211
INFO 2026-06-08 09:38:11 MarkDuplicates Tracking 864116 as yet unmatched pairs. 17417 records in RAM.
INFO 2026-06-08 09:38:12 MarkDuplicates Read 305,000,000 records. Elapsed time: 00:07:59s. Time for last 1,000,000: 1s. Last read position: chr9:130,054,019
INFO 2026-06-08 09:38:12 MarkDuplicates Tracking 860777 as yet unmatched pairs. 14069 records in RAM.
INFO 2026-06-08 09:38:14 MarkDuplicates Read 306,000,000 records. Elapsed time: 00:08:00s. Time for last 1,000,000: 1s. Last read position: chr9:131,860,638
INFO 2026-06-08 09:38:14 MarkDuplicates Tracking 857589 as yet unmatched pairs. 10879 records in RAM.
INFO 2026-06-08 09:38:15 MarkDuplicates Read 307,000,000 records. Elapsed time: 00:08:02s. Time for last 1,000,000: 1s. Last read position: chr9:134,754,287
INFO 2026-06-08 09:38:15 MarkDuplicates Tracking 858343 as yet unmatched pairs. 11624 records in RAM.
INFO 2026-06-08 09:38:17 MarkDuplicates Read 308,000,000 records. Elapsed time: 00:08:03s. Time for last 1,000,000: 1s. Last read position: chr9:136,451,285
INFO 2026-06-08 09:38:17 MarkDuplicates Tracking 851902 as yet unmatched pairs. 5177 records in RAM.
INFO 2026-06-08 09:38:19 MarkDuplicates Read 309,000,000 records. Elapsed time: 00:08:05s. Time for last 1,000,000: 1s. Last read position: chr9:137,013,226
INFO 2026-06-08 09:38:19 MarkDuplicates Tracking 848630 as yet unmatched pairs. 1897 records in RAM.
INFO 2026-06-08 09:38:20 MarkDuplicates Read 310,000,000 records. Elapsed time: 00:08:07s. Time for last 1,000,000: 1s. Last read position: chr10:5,748,828
INFO 2026-06-08 09:38:20 MarkDuplicates Tracking 845751 as yet unmatched pairs. 32525 records in RAM.
INFO 2026-06-08 09:38:22 MarkDuplicates Read 311,000,000 records. Elapsed time: 00:08:08s. Time for last 1,000,000: 1s. Last read position: chr10:18,540,829
INFO 2026-06-08 09:38:22 MarkDuplicates Tracking 842784 as yet unmatched pairs. 29545 records in RAM.
INFO 2026-06-08 09:38:24 MarkDuplicates Read 312,000,000 records. Elapsed time: 00:08:10s. Time for last 1,000,000: 1s. Last read position: chr10:30,857,673
INFO 2026-06-08 09:38:24 MarkDuplicates Tracking 840336 as yet unmatched pairs. 27091 records in RAM.
INFO 2026-06-08 09:38:25 MarkDuplicates Read 313,000,000 records. Elapsed time: 00:08:11s. Time for last 1,000,000: 1s. Last read position: chr10:32,929,846
INFO 2026-06-08 09:38:25 MarkDuplicates Tracking 840733 as yet unmatched pairs. 27464 records in RAM.
INFO 2026-06-08 09:38:27 MarkDuplicates Read 314,000,000 records. Elapsed time: 00:08:13s. Time for last 1,000,000: 1s. Last read position: chr10:46,837,761
INFO 2026-06-08 09:38:27 MarkDuplicates Tracking 835776 as yet unmatched pairs. 22500 records in RAM.
INFO 2026-06-08 09:38:28 MarkDuplicates Read 315,000,000 records. Elapsed time: 00:08:14s. Time for last 1,000,000: 1s. Last read position: chr10:63,207,004
INFO 2026-06-08 09:38:28 MarkDuplicates Tracking 834306 as yet unmatched pairs. 21001 records in RAM.
INFO 2026-06-08 09:38:29 MarkDuplicates Read 316,000,000 records. Elapsed time: 00:08:16s. Time for last 1,000,000: 1s. Last read position: chr10:72,423,233
INFO 2026-06-08 09:38:29 MarkDuplicates Tracking 830811 as yet unmatched pairs. 17484 records in RAM.
INFO 2026-06-08 09:38:31 MarkDuplicates Read 317,000,000 records. Elapsed time: 00:08:17s. Time for last 1,000,000: 1s. Last read position: chr10:78,035,382
INFO 2026-06-08 09:38:31 MarkDuplicates Tracking 829363 as yet unmatched pairs. 16022 records in RAM.
INFO 2026-06-08 09:38:33 MarkDuplicates Read 318,000,000 records. Elapsed time: 00:08:19s. Time for last 1,000,000: 1s. Last read position: chr10:89,307,260
INFO 2026-06-08 09:38:33 MarkDuplicates Tracking 826095 as yet unmatched pairs. 12729 records in RAM.
INFO 2026-06-08 09:38:34 MarkDuplicates Read 319,000,000 records. Elapsed time: 00:08:21s. Time for last 1,000,000: 1s. Last read position: chr10:97,430,604
INFO 2026-06-08 09:38:34 MarkDuplicates Tracking 825229 as yet unmatched pairs. 11838 records in RAM.
INFO 2026-06-08 09:38:36 MarkDuplicates Read 320,000,000 records. Elapsed time: 00:08:22s. Time for last 1,000,000: 1s. Last read position: chr10:102,376,320
INFO 2026-06-08 09:38:36 MarkDuplicates Tracking 820779 as yet unmatched pairs. 7373 records in RAM.
INFO 2026-06-08 09:38:37 MarkDuplicates Read 321,000,000 records. Elapsed time: 00:08:24s. Time for last 1,000,000: 1s. Last read position: chr10:113,679,936
INFO 2026-06-08 09:38:37 MarkDuplicates Tracking 818086 as yet unmatched pairs. 4657 records in RAM.
INFO 2026-06-08 09:38:39 MarkDuplicates Read 322,000,000 records. Elapsed time: 00:08:25s. Time for last 1,000,000: 1s. Last read position: chr10:125,867,167
INFO 2026-06-08 09:38:39 MarkDuplicates Tracking 815439 as yet unmatched pairs. 1994 records in RAM.
INFO 2026-06-08 09:38:41 MarkDuplicates Read 323,000,000 records. Elapsed time: 00:08:27s. Time for last 1,000,000: 2s. Last read position: chr11:309,184
INFO 2026-06-08 09:38:41 MarkDuplicates Tracking 816163 as yet unmatched pairs. 90693 records in RAM.
INFO 2026-06-08 09:38:42 MarkDuplicates Read 324,000,000 records. Elapsed time: 00:08:29s. Time for last 1,000,000: 1s. Last read position: chr11:320,658
INFO 2026-06-08 09:38:42 MarkDuplicates Tracking 829474 as yet unmatched pairs. 104003 records in RAM.
INFO 2026-06-08 09:38:44 MarkDuplicates Read 325,000,000 records. Elapsed time: 00:08:30s. Time for last 1,000,000: 1s. Last read position: chr11:1,754,042
INFO 2026-06-08 09:38:44 MarkDuplicates Tracking 809186 as yet unmatched pairs. 83701 records in RAM.
INFO 2026-06-08 09:38:45 MarkDuplicates Read 326,000,000 records. Elapsed time: 00:08:32s. Time for last 1,000,000: 1s. Last read position: chr11:2,133,157
INFO 2026-06-08 09:38:45 MarkDuplicates Tracking 829069 as yet unmatched pairs. 103548 records in RAM.
INFO 2026-06-08 09:38:47 MarkDuplicates Read 327,000,000 records. Elapsed time: 00:08:34s. Time for last 1,000,000: 1s. Last read position: chr11:2,135,457
INFO 2026-06-08 09:38:47 MarkDuplicates Tracking 816395 as yet unmatched pairs. 90868 records in RAM.
INFO 2026-06-08 09:38:49 MarkDuplicates Read 328,000,000 records. Elapsed time: 00:08:35s. Time for last 1,000,000: 1s. Last read position: chr11:6,478,731
INFO 2026-06-08 09:38:49 MarkDuplicates Tracking 798545 as yet unmatched pairs. 73000 records in RAM.
INFO 2026-06-08 09:38:50 MarkDuplicates Read 329,000,000 records. Elapsed time: 00:08:37s. Time for last 1,000,000: 1s. Last read position: chr11:9,139,706
INFO 2026-06-08 09:38:50 MarkDuplicates Tracking 796211 as yet unmatched pairs. 70663 records in RAM.
INFO 2026-06-08 09:38:52 MarkDuplicates Read 330,000,000 records. Elapsed time: 00:08:38s. Time for last 1,000,000: 1s. Last read position: chr11:12,259,874
INFO 2026-06-08 09:38:52 MarkDuplicates Tracking 792857 as yet unmatched pairs. 67308 records in RAM.
INFO 2026-06-08 09:38:53 MarkDuplicates Read 331,000,000 records. Elapsed time: 00:08:40s. Time for last 1,000,000: 1s. Last read position: chr11:19,350,896
INFO 2026-06-08 09:38:53 MarkDuplicates Tracking 790706 as yet unmatched pairs. 65111 records in RAM.
INFO 2026-06-08 09:38:55 MarkDuplicates Read 332,000,000 records. Elapsed time: 00:08:41s. Time for last 1,000,000: 1s. Last read position: chr11:34,097,250
INFO 2026-06-08 09:38:55 MarkDuplicates Tracking 789440 as yet unmatched pairs. 63826 records in RAM.
INFO 2026-06-08 09:38:56 MarkDuplicates Read 333,000,000 records. Elapsed time: 00:08:43s. Time for last 1,000,000: 1s. Last read position: chr11:46,317,444
INFO 2026-06-08 09:38:56 MarkDuplicates Tracking 785888 as yet unmatched pairs. 60249 records in RAM.
INFO 2026-06-08 09:38:58 MarkDuplicates Read 334,000,000 records. Elapsed time: 00:08:44s. Time for last 1,000,000: 1s. Last read position: chr11:47,477,334
INFO 2026-06-08 09:38:58 MarkDuplicates Tracking 782883 as yet unmatched pairs. 57225 records in RAM.
INFO 2026-06-08 09:38:59 MarkDuplicates Read 335,000,000 records. Elapsed time: 00:08:46s. Time for last 1,000,000: 1s. Last read position: chr11:57,611,819
INFO 2026-06-08 09:38:59 MarkDuplicates Tracking 780307 as yet unmatched pairs. 54640 records in RAM.
INFO 2026-06-08 09:39:01 MarkDuplicates Read 336,000,000 records. Elapsed time: 00:08:47s. Time for last 1,000,000: 1s. Last read position: chr11:61,367,920
INFO 2026-06-08 09:39:01 MarkDuplicates Tracking 777651 as yet unmatched pairs. 51975 records in RAM.
INFO 2026-06-08 09:39:03 MarkDuplicates Read 337,000,000 records. Elapsed time: 00:08:49s. Time for last 1,000,000: 1s. Last read position: chr11:62,533,434
INFO 2026-06-08 09:39:03 MarkDuplicates Tracking 775081 as yet unmatched pairs. 49401 records in RAM.
INFO 2026-06-08 09:39:04 MarkDuplicates Read 338,000,000 records. Elapsed time: 00:08:50s. Time for last 1,000,000: 1s. Last read position: chr11:63,598,059
INFO 2026-06-08 09:39:04 MarkDuplicates Tracking 772155 as yet unmatched pairs. 46470 records in RAM.
INFO 2026-06-08 09:39:06 MarkDuplicates Read 339,000,000 records. Elapsed time: 00:08:52s. Time for last 1,000,000: 1s. Last read position: chr11:64,767,817
INFO 2026-06-08 09:39:06 MarkDuplicates Tracking 770114 as yet unmatched pairs. 44418 records in RAM.
INFO 2026-06-08 09:39:07 MarkDuplicates Read 340,000,000 records. Elapsed time: 00:08:54s. Time for last 1,000,000: 1s. Last read position: chr11:65,540,932
INFO 2026-06-08 09:39:07 MarkDuplicates Tracking 767581 as yet unmatched pairs. 41838 records in RAM.
INFO 2026-06-08 09:39:09 MarkDuplicates Read 341,000,000 records. Elapsed time: 00:08:55s. Time for last 1,000,000: 1s. Last read position: chr11:65,660,201
INFO 2026-06-08 09:39:09 MarkDuplicates Tracking 764162 as yet unmatched pairs. 38398 records in RAM.
INFO 2026-06-08 09:39:10 MarkDuplicates Read 342,000,000 records. Elapsed time: 00:08:57s. Time for last 1,000,000: 1s. Last read position: chr11:66,315,597
INFO 2026-06-08 09:39:10 MarkDuplicates Tracking 762974 as yet unmatched pairs. 37208 records in RAM.
INFO 2026-06-08 09:39:12 MarkDuplicates Read 343,000,000 records. Elapsed time: 00:08:58s. Time for last 1,000,000: 1s. Last read position: chr11:67,441,360
INFO 2026-06-08 09:39:12 MarkDuplicates Tracking 757816 as yet unmatched pairs. 32038 records in RAM.
INFO 2026-06-08 09:39:14 MarkDuplicates Read 344,000,000 records. Elapsed time: 00:09:00s. Time for last 1,000,000: 1s. Last read position: chr11:69,643,874
INFO 2026-06-08 09:39:14 MarkDuplicates Tracking 757508 as yet unmatched pairs. 31713 records in RAM.
INFO 2026-06-08 09:39:15 MarkDuplicates Read 345,000,000 records. Elapsed time: 00:09:02s. Time for last 1,000,000: 1s. Last read position: chr11:72,229,147
INFO 2026-06-08 09:39:15 MarkDuplicates Tracking 751816 as yet unmatched pairs. 26011 records in RAM.
INFO 2026-06-08 09:39:17 MarkDuplicates Read 346,000,000 records. Elapsed time: 00:09:03s. Time for last 1,000,000: 1s. Last read position: chr11:75,283,374
INFO 2026-06-08 09:39:17 MarkDuplicates Tracking 748691 as yet unmatched pairs. 22866 records in RAM.
INFO 2026-06-08 09:39:18 MarkDuplicates Read 347,000,000 records. Elapsed time: 00:09:05s. Time for last 1,000,000: 1s. Last read position: chr11:77,158,323
INFO 2026-06-08 09:39:18 MarkDuplicates Tracking 745544 as yet unmatched pairs. 19703 records in RAM.
INFO 2026-06-08 09:39:20 MarkDuplicates Read 348,000,000 records. Elapsed time: 00:09:07s. Time for last 1,000,000: 1s. Last read position: chr11:90,282,936
INFO 2026-06-08 09:39:20 MarkDuplicates Tracking 743025 as yet unmatched pairs. 17150 records in RAM.
INFO 2026-06-08 09:39:22 MarkDuplicates Read 349,000,000 records. Elapsed time: 00:09:08s. Time for last 1,000,000: 1s. Last read position: chr11:102,110,954
INFO 2026-06-08 09:39:22 MarkDuplicates Tracking 742814 as yet unmatched pairs. 16926 records in RAM.
INFO 2026-06-08 09:39:23 MarkDuplicates Read 350,000,000 records. Elapsed time: 00:09:10s. Time for last 1,000,000: 1s. Last read position: chr11:108,161,226
INFO 2026-06-08 09:39:23 MarkDuplicates Tracking 738069 as yet unmatched pairs. 12164 records in RAM.
INFO 2026-06-08 09:39:25 MarkDuplicates Read 351,000,000 records. Elapsed time: 00:09:11s. Time for last 1,000,000: 1s. Last read position: chr11:117,296,947
INFO 2026-06-08 09:39:25 MarkDuplicates Tracking 735527 as yet unmatched pairs. 9596 records in RAM.
INFO 2026-06-08 09:39:26 MarkDuplicates Read 352,000,000 records. Elapsed time: 00:09:13s. Time for last 1,000,000: 1s. Last read position: chr11:118,897,619
INFO 2026-06-08 09:39:26 MarkDuplicates Tracking 733071 as yet unmatched pairs. 7136 records in RAM.
INFO 2026-06-08 09:39:28 MarkDuplicates Read 353,000,000 records. Elapsed time: 00:09:14s. Time for last 1,000,000: 1s. Last read position: chr11:121,621,060
INFO 2026-06-08 09:39:28 MarkDuplicates Tracking 730065 as yet unmatched pairs. 4125 records in RAM.
INFO 2026-06-08 09:39:30 MarkDuplicates Read 354,000,000 records. Elapsed time: 00:09:16s. Time for last 1,000,000: 1s. Last read position: chr11:128,484,967
INFO 2026-06-08 09:39:30 MarkDuplicates Tracking 727916 as yet unmatched pairs. 1971 records in RAM.
INFO 2026-06-08 09:39:32 MarkDuplicates Read 355,000,000 records. Elapsed time: 00:09:19s. Time for last 1,000,000: 2s. Last read position: chr12:754,314
INFO 2026-06-08 09:39:32 MarkDuplicates Tracking 726702 as yet unmatched pairs. 108266 records in RAM.
INFO 2026-06-08 09:39:34 MarkDuplicates Read 356,000,000 records. Elapsed time: 00:09:20s. Time for last 1,000,000: 1s. Last read position: chr12:1,952,931
INFO 2026-06-08 09:39:34 MarkDuplicates Tracking 722514 as yet unmatched pairs. 104072 records in RAM.
INFO 2026-06-08 09:39:35 MarkDuplicates Read 357,000,000 records. Elapsed time: 00:09:22s. Time for last 1,000,000: 1s. Last read position: chr12:6,492,932
INFO 2026-06-08 09:39:35 MarkDuplicates Tracking 720801 as yet unmatched pairs. 102342 records in RAM.
INFO 2026-06-08 09:39:37 MarkDuplicates Read 358,000,000 records. Elapsed time: 00:09:23s. Time for last 1,000,000: 1s. Last read position: chr12:6,773,860
INFO 2026-06-08 09:39:37 MarkDuplicates Tracking 717192 as yet unmatched pairs. 98727 records in RAM.
INFO 2026-06-08 09:39:38 MarkDuplicates Read 359,000,000 records. Elapsed time: 00:09:25s. Time for last 1,000,000: 1s. Last read position: chr12:7,109,118
INFO 2026-06-08 09:39:38 MarkDuplicates Tracking 714341 as yet unmatched pairs. 95874 records in RAM.
INFO 2026-06-08 09:39:40 MarkDuplicates Read 360,000,000 records. Elapsed time: 00:09:26s. Time for last 1,000,000: 1s. Last read position: chr12:9,069,799
INFO 2026-06-08 09:39:40 MarkDuplicates Tracking 714094 as yet unmatched pairs. 95622 records in RAM.
INFO 2026-06-08 09:39:42 MarkDuplicates Read 361,000,000 records. Elapsed time: 00:09:28s. Time for last 1,000,000: 1s. Last read position: chr12:10,702,121
INFO 2026-06-08 09:39:42 MarkDuplicates Tracking 709978 as yet unmatched pairs. 91491 records in RAM.
INFO 2026-06-08 09:39:43 MarkDuplicates Read 362,000,000 records. Elapsed time: 00:09:29s. Time for last 1,000,000: 1s. Last read position: chr12:14,787,103
INFO 2026-06-08 09:39:43 MarkDuplicates Tracking 707808 as yet unmatched pairs. 89301 records in RAM.
INFO 2026-06-08 09:39:45 MarkDuplicates Read 363,000,000 records. Elapsed time: 00:09:31s. Time for last 1,000,000: 1s. Last read position: chr12:21,910,181
INFO 2026-06-08 09:39:45 MarkDuplicates Tracking 704837 as yet unmatched pairs. 86323 records in RAM.
INFO 2026-06-08 09:39:46 MarkDuplicates Read 364,000,000 records. Elapsed time: 00:09:33s. Time for last 1,000,000: 1s. Last read position: chr12:30,719,172
INFO 2026-06-08 09:39:46 MarkDuplicates Tracking 702063 as yet unmatched pairs. 83538 records in RAM.
INFO 2026-06-08 09:39:48 MarkDuplicates Read 365,000,000 records. Elapsed time: 00:09:35s. Time for last 1,000,000: 1s. Last read position: chr12:45,851,921
INFO 2026-06-08 09:39:48 MarkDuplicates Tracking 699451 as yet unmatched pairs. 80910 records in RAM.
INFO 2026-06-08 09:39:50 MarkDuplicates Read 366,000,000 records. Elapsed time: 00:09:36s. Time for last 1,000,000: 1s. Last read position: chr12:49,027,867
INFO 2026-06-08 09:39:50 MarkDuplicates Tracking 697117 as yet unmatched pairs. 78567 records in RAM.
INFO 2026-06-08 09:39:51 MarkDuplicates Read 367,000,000 records. Elapsed time: 00:09:38s. Time for last 1,000,000: 1s. Last read position: chr12:49,128,560
INFO 2026-06-08 09:39:51 MarkDuplicates Tracking 695431 as yet unmatched pairs. 76881 records in RAM.
INFO 2026-06-08 09:39:53 MarkDuplicates Read 368,000,000 records. Elapsed time: 00:09:39s. Time for last 1,000,000: 1s. Last read position: chr12:49,642,887
INFO 2026-06-08 09:39:53 MarkDuplicates Tracking 692583 as yet unmatched pairs. 74030 records in RAM.
INFO 2026-06-08 09:39:54 MarkDuplicates Read 369,000,000 records. Elapsed time: 00:09:41s. Time for last 1,000,000: 1s. Last read position: chr12:51,118,733
INFO 2026-06-08 09:39:54 MarkDuplicates Tracking 689856 as yet unmatched pairs. 71293 records in RAM.
INFO 2026-06-08 09:39:56 MarkDuplicates Read 370,000,000 records. Elapsed time: 00:09:43s. Time for last 1,000,000: 1s. Last read position: chr12:52,057,182
INFO 2026-06-08 09:39:56 MarkDuplicates Tracking 690221 as yet unmatched pairs. 71649 records in RAM.
INFO 2026-06-08 09:39:58 MarkDuplicates Read 371,000,000 records. Elapsed time: 00:09:44s. Time for last 1,000,000: 1s. Last read position: chr12:53,411,106
INFO 2026-06-08 09:39:58 MarkDuplicates Tracking 684173 as yet unmatched pairs. 65590 records in RAM.
INFO 2026-06-08 09:39:59 MarkDuplicates Read 372,000,000 records. Elapsed time: 00:09:46s. Time for last 1,000,000: 1s. Last read position: chr12:54,281,881
INFO 2026-06-08 09:39:59 MarkDuplicates Tracking 684358 as yet unmatched pairs. 65767 records in RAM.
INFO 2026-06-08 09:40:01 MarkDuplicates Read 373,000,000 records. Elapsed time: 00:09:47s. Time for last 1,000,000: 1s. Last read position: chr12:55,727,228
INFO 2026-06-08 09:40:01 MarkDuplicates Tracking 683184 as yet unmatched pairs. 64579 records in RAM.
INFO 2026-06-08 09:40:03 MarkDuplicates Read 374,000,000 records. Elapsed time: 00:09:49s. Time for last 1,000,000: 1s. Last read position: chr12:56,257,851
INFO 2026-06-08 09:40:03 MarkDuplicates Tracking 676637 as yet unmatched pairs. 58026 records in RAM.
INFO 2026-06-08 09:40:04 MarkDuplicates Read 375,000,000 records. Elapsed time: 00:09:50s. Time for last 1,000,000: 1s. Last read position: chr12:56,670,313
INFO 2026-06-08 09:40:04 MarkDuplicates Tracking 677172 as yet unmatched pairs. 58558 records in RAM.
INFO 2026-06-08 09:40:06 MarkDuplicates Read 376,000,000 records. Elapsed time: 00:09:52s. Time for last 1,000,000: 1s. Last read position: chr12:57,096,869
INFO 2026-06-08 09:40:06 MarkDuplicates Tracking 675110 as yet unmatched pairs. 56489 records in RAM.
INFO 2026-06-08 09:40:08 MarkDuplicates Read 377,000,000 records. Elapsed time: 00:09:54s. Time for last 1,000,000: 1s. Last read position: chr12:57,175,571
INFO 2026-06-08 09:40:08 MarkDuplicates Tracking 670729 as yet unmatched pairs. 52097 records in RAM.
INFO 2026-06-08 09:40:09 MarkDuplicates Read 378,000,000 records. Elapsed time: 00:09:55s. Time for last 1,000,000: 1s. Last read position: chr12:57,206,607
INFO 2026-06-08 09:40:09 MarkDuplicates Tracking 666823 as yet unmatched pairs. 48191 records in RAM.
INFO 2026-06-08 09:40:11 MarkDuplicates Read 379,000,000 records. Elapsed time: 00:09:57s. Time for last 1,000,000: 1s. Last read position: chr12:57,528,674
INFO 2026-06-08 09:40:11 MarkDuplicates Tracking 663091 as yet unmatched pairs. 44459 records in RAM.
INFO 2026-06-08 09:40:12 MarkDuplicates Read 380,000,000 records. Elapsed time: 00:09:58s. Time for last 1,000,000: 1s. Last read position: chr12:62,498,996
INFO 2026-06-08 09:40:12 MarkDuplicates Tracking 660852 as yet unmatched pairs. 42208 records in RAM.
INFO 2026-06-08 09:40:14 MarkDuplicates Read 381,000,000 records. Elapsed time: 00:10:00s. Time for last 1,000,000: 1s. Last read position: chr12:67,657,572
INFO 2026-06-08 09:40:14 MarkDuplicates Tracking 657807 as yet unmatched pairs. 39145 records in RAM.
INFO 2026-06-08 09:40:15 MarkDuplicates Read 382,000,000 records. Elapsed time: 00:10:02s. Time for last 1,000,000: 1s. Last read position: chr12:76,030,732
INFO 2026-06-08 09:40:15 MarkDuplicates Tracking 657850 as yet unmatched pairs. 39179 records in RAM.
INFO 2026-06-08 09:40:17 MarkDuplicates Read 383,000,000 records. Elapsed time: 00:10:03s. Time for last 1,000,000: 1s. Last read position: chr12:88,154,302
INFO 2026-06-08 09:40:17 MarkDuplicates Tracking 652863 as yet unmatched pairs. 34175 records in RAM.
INFO 2026-06-08 09:40:18 MarkDuplicates Read 384,000,000 records. Elapsed time: 00:10:05s. Time for last 1,000,000: 1s. Last read position: chr12:91,164,662
INFO 2026-06-08 09:40:18 MarkDuplicates Tracking 655952 as yet unmatched pairs. 37259 records in RAM.
INFO 2026-06-08 09:40:20 MarkDuplicates Read 385,000,000 records. Elapsed time: 00:10:06s. Time for last 1,000,000: 1s. Last read position: chr12:98,600,080
INFO 2026-06-08 09:40:20 MarkDuplicates Tracking 649407 as yet unmatched pairs. 30708 records in RAM.
INFO 2026-06-08 09:40:22 MarkDuplicates Read 386,000,000 records. Elapsed time: 00:10:08s. Time for last 1,000,000: 1s. Last read position: chr12:103,946,678
INFO 2026-06-08 09:40:22 MarkDuplicates Tracking 650010 as yet unmatched pairs. 31307 records in RAM.
INFO 2026-06-08 09:40:23 MarkDuplicates Read 387,000,000 records. Elapsed time: 00:10:09s. Time for last 1,000,000: 1s. Last read position: chr12:108,526,137
INFO 2026-06-08 09:40:23 MarkDuplicates Tracking 642813 as yet unmatched pairs. 24101 records in RAM.
INFO 2026-06-08 09:40:25 MarkDuplicates Read 388,000,000 records. Elapsed time: 00:10:11s. Time for last 1,000,000: 1s. Last read position: chr12:110,722,493
INFO 2026-06-08 09:40:25 MarkDuplicates Tracking 642689 as yet unmatched pairs. 23966 records in RAM.
INFO 2026-06-08 09:40:26 MarkDuplicates Read 389,000,000 records. Elapsed time: 00:10:12s. Time for last 1,000,000: 1s. Last read position: chr12:112,486,463
INFO 2026-06-08 09:40:26 MarkDuplicates Tracking 637538 as yet unmatched pairs. 18797 records in RAM.
INFO 2026-06-08 09:40:28 MarkDuplicates Read 390,000,000 records. Elapsed time: 00:10:14s. Time for last 1,000,000: 1s. Last read position: chr12:116,006,322
INFO 2026-06-08 09:40:28 MarkDuplicates Tracking 634605 as yet unmatched pairs. 15864 records in RAM.
INFO 2026-06-08 09:40:29 MarkDuplicates Read 391,000,000 records. Elapsed time: 00:10:15s. Time for last 1,000,000: 1s. Last read position: chr12:120,496,134
INFO 2026-06-08 09:40:29 MarkDuplicates Tracking 632093 as yet unmatched pairs. 13347 records in RAM.
INFO 2026-06-08 09:40:31 MarkDuplicates Read 392,000,000 records. Elapsed time: 00:10:17s. Time for last 1,000,000: 1s. Last read position: chr12:122,517,273
INFO 2026-06-08 09:40:31 MarkDuplicates Tracking 629120 as yet unmatched pairs. 10362 records in RAM.
INFO 2026-06-08 09:40:32 MarkDuplicates Read 393,000,000 records. Elapsed time: 00:10:19s. Time for last 1,000,000: 1s. Last read position: chr12:124,334,448
INFO 2026-06-08 09:40:32 MarkDuplicates Tracking 626745 as yet unmatched pairs. 7982 records in RAM.
INFO 2026-06-08 09:40:34 MarkDuplicates Read 394,000,000 records. Elapsed time: 00:10:20s. Time for last 1,000,000: 1s. Last read position: chr12:124,912,437
INFO 2026-06-08 09:40:34 MarkDuplicates Tracking 624078 as yet unmatched pairs. 5307 records in RAM.
INFO 2026-06-08 09:40:35 MarkDuplicates Read 395,000,000 records. Elapsed time: 00:10:22s. Time for last 1,000,000: 1s. Last read position: chr12:132,710,850
INFO 2026-06-08 09:40:35 MarkDuplicates Tracking 620590 as yet unmatched pairs. 1815 records in RAM.
INFO 2026-06-08 09:40:37 MarkDuplicates Read 396,000,000 records. Elapsed time: 00:10:24s. Time for last 1,000,000: 2s. Last read position: chr13:20,006,551
INFO 2026-06-08 09:40:37 MarkDuplicates Tracking 620297 as yet unmatched pairs. 38867 records in RAM.
INFO 2026-06-08 09:40:39 MarkDuplicates Read 397,000,000 records. Elapsed time: 00:10:25s. Time for last 1,000,000: 1s. Last read position: chr13:24,459,083
INFO 2026-06-08 09:40:39 MarkDuplicates Tracking 615725 as yet unmatched pairs. 34290 records in RAM.
INFO 2026-06-08 09:40:40 MarkDuplicates Read 398,000,000 records. Elapsed time: 00:10:27s. Time for last 1,000,000: 1s. Last read position: chr13:31,158,839
INFO 2026-06-08 09:40:40 MarkDuplicates Tracking 613268 as yet unmatched pairs. 31806 records in RAM.
INFO 2026-06-08 09:40:42 MarkDuplicates Read 399,000,000 records. Elapsed time: 00:10:29s. Time for last 1,000,000: 1s. Last read position: chr13:37,563,318
INFO 2026-06-08 09:40:42 MarkDuplicates Tracking 624021 as yet unmatched pairs. 42537 records in RAM.
INFO 2026-06-08 09:40:44 MarkDuplicates Read 400,000,000 records. Elapsed time: 00:10:30s. Time for last 1,000,000: 1s. Last read position: chr13:37,584,089
INFO 2026-06-08 09:40:44 MarkDuplicates Tracking 614498 as yet unmatched pairs. 33011 records in RAM.
INFO 2026-06-08 09:40:46 MarkDuplicates Read 401,000,000 records. Elapsed time: 00:10:32s. Time for last 1,000,000: 1s. Last read position: chr13:42,300,905
INFO 2026-06-08 09:40:46 MarkDuplicates Tracking 606265 as yet unmatched pairs. 24759 records in RAM.
INFO 2026-06-08 09:40:47 MarkDuplicates Read 402,000,000 records. Elapsed time: 00:10:33s. Time for last 1,000,000: 1s. Last read position: chr13:46,781,587
INFO 2026-06-08 09:40:47 MarkDuplicates Tracking 603491 as yet unmatched pairs. 21978 records in RAM.
INFO 2026-06-08 09:40:49 MarkDuplicates Read 403,000,000 records. Elapsed time: 00:10:35s. Time for last 1,000,000: 1s. Last read position: chr13:57,634,883
INFO 2026-06-08 09:40:49 MarkDuplicates Tracking 600900 as yet unmatched pairs. 19372 records in RAM.
INFO 2026-06-08 09:40:50 MarkDuplicates Read 404,000,000 records. Elapsed time: 00:10:36s. Time for last 1,000,000: 1s. Last read position: chr13:77,278,774
INFO 2026-06-08 09:40:50 MarkDuplicates Tracking 598290 as yet unmatched pairs. 16752 records in RAM.
INFO 2026-06-08 09:40:52 MarkDuplicates Read 405,000,000 records. Elapsed time: 00:10:38s. Time for last 1,000,000: 1s. Last read position: chr13:98,446,036
INFO 2026-06-08 09:40:52 MarkDuplicates Tracking 596048 as yet unmatched pairs. 14494 records in RAM.
INFO 2026-06-08 09:40:53 MarkDuplicates Read 406,000,000 records. Elapsed time: 00:10:39s. Time for last 1,000,000: 1s. Last read position: chr13:107,866,320
INFO 2026-06-08 09:40:53 MarkDuplicates Tracking 593145 as yet unmatched pairs. 11557 records in RAM.
INFO 2026-06-08 09:40:55 MarkDuplicates Read 407,000,000 records. Elapsed time: 00:10:41s. Time for last 1,000,000: 1s. Last read position: chr13:110,201,490
INFO 2026-06-08 09:40:55 MarkDuplicates Tracking 592417 as yet unmatched pairs. 10828 records in RAM.
INFO 2026-06-08 09:40:56 MarkDuplicates Read 408,000,000 records. Elapsed time: 00:10:42s. Time for last 1,000,000: 1s. Last read position: chr13:110,458,907
INFO 2026-06-08 09:40:56 MarkDuplicates Tracking 589670 as yet unmatched pairs. 8074 records in RAM.
INFO 2026-06-08 09:40:58 MarkDuplicates Read 409,000,000 records. Elapsed time: 00:10:44s. Time for last 1,000,000: 1s. Last read position: chr13:111,244,230
INFO 2026-06-08 09:40:58 MarkDuplicates Tracking 584349 as yet unmatched pairs. 2731 records in RAM.
INFO 2026-06-08 09:41:00 MarkDuplicates Read 410,000,000 records. Elapsed time: 00:10:46s. Time for last 1,000,000: 1s. Last read position: chr14:20,801,577
INFO 2026-06-08 09:41:00 MarkDuplicates Tracking 583552 as yet unmatched pairs. 33982 records in RAM.
INFO 2026-06-08 09:41:01 MarkDuplicates Read 411,000,000 records. Elapsed time: 00:10:47s. Time for last 1,000,000: 1s. Last read position: chr14:22,844,431
INFO 2026-06-08 09:41:01 MarkDuplicates Tracking 581412 as yet unmatched pairs. 31839 records in RAM.
INFO 2026-06-08 09:41:03 MarkDuplicates Read 412,000,000 records. Elapsed time: 00:10:49s. Time for last 1,000,000: 1s. Last read position: chr14:24,194,933
INFO 2026-06-08 09:41:03 MarkDuplicates Tracking 576056 as yet unmatched pairs. 26472 records in RAM.
INFO 2026-06-08 09:41:04 MarkDuplicates Read 413,000,000 records. Elapsed time: 00:10:50s. Time for last 1,000,000: 1s. Last read position: chr14:34,996,720
INFO 2026-06-08 09:41:04 MarkDuplicates Tracking 573764 as yet unmatched pairs. 24177 records in RAM.
INFO 2026-06-08 09:41:06 MarkDuplicates Read 414,000,000 records. Elapsed time: 00:10:52s. Time for last 1,000,000: 1s. Last read position: chr14:50,756,738
INFO 2026-06-08 09:41:06 MarkDuplicates Tracking 570906 as yet unmatched pairs. 21295 records in RAM.
INFO 2026-06-08 09:41:07 MarkDuplicates Read 415,000,000 records. Elapsed time: 00:10:53s. Time for last 1,000,000: 1s. Last read position: chr14:56,579,878
INFO 2026-06-08 09:41:07 MarkDuplicates Tracking 568416 as yet unmatched pairs. 18794 records in RAM.
INFO 2026-06-08 09:41:09 MarkDuplicates Read 416,000,000 records. Elapsed time: 00:10:55s. Time for last 1,000,000: 1s. Last read position: chr14:67,656,535
INFO 2026-06-08 09:41:09 MarkDuplicates Tracking 565829 as yet unmatched pairs. 16203 records in RAM.
INFO 2026-06-08 09:41:10 MarkDuplicates Read 417,000,000 records. Elapsed time: 00:10:56s. Time for last 1,000,000: 1s. Last read position: chr14:73,575,202
INFO 2026-06-08 09:41:10 MarkDuplicates Tracking 563031 as yet unmatched pairs. 13386 records in RAM.
INFO 2026-06-08 09:41:12 MarkDuplicates Read 418,000,000 records. Elapsed time: 00:10:58s. Time for last 1,000,000: 1s. Last read position: chr14:75,280,909
INFO 2026-06-08 09:41:12 MarkDuplicates Tracking 564642 as yet unmatched pairs. 14991 records in RAM.
INFO 2026-06-08 09:41:13 MarkDuplicates Read 419,000,000 records. Elapsed time: 00:11:00s. Time for last 1,000,000: 1s. Last read position: chr14:90,397,207
INFO 2026-06-08 09:41:13 MarkDuplicates Tracking 558958 as yet unmatched pairs. 9297 records in RAM.
INFO 2026-06-08 09:41:15 MarkDuplicates Read 420,000,000 records. Elapsed time: 00:11:01s. Time for last 1,000,000: 1s. Last read position: chr14:99,662,959
INFO 2026-06-08 09:41:15 MarkDuplicates Tracking 555057 as yet unmatched pairs. 5381 records in RAM.
INFO 2026-06-08 09:41:16 MarkDuplicates Read 421,000,000 records. Elapsed time: 00:11:03s. Time for last 1,000,000: 1s. Last read position: chr14:102,835,496
INFO 2026-06-08 09:41:16 MarkDuplicates Tracking 552421 as yet unmatched pairs. 2744 records in RAM.
INFO 2026-06-08 09:41:18 MarkDuplicates Read 422,000,000 records. Elapsed time: 00:11:05s. Time for last 1,000,000: 2s. Last read position: chr15:22,543,071
INFO 2026-06-08 09:41:18 MarkDuplicates Tracking 549761 as yet unmatched pairs. 49671 records in RAM.
INFO 2026-06-08 09:41:20 MarkDuplicates Read 423,000,000 records. Elapsed time: 00:11:06s. Time for last 1,000,000: 1s. Last read position: chr15:30,359,012
INFO 2026-06-08 09:41:20 MarkDuplicates Tracking 547195 as yet unmatched pairs. 47100 records in RAM.
INFO 2026-06-08 09:41:21 MarkDuplicates Read 424,000,000 records. Elapsed time: 00:11:08s. Time for last 1,000,000: 1s. Last read position: chr15:39,965,700
INFO 2026-06-08 09:41:21 MarkDuplicates Tracking 545554 as yet unmatched pairs. 45446 records in RAM.
INFO 2026-06-08 09:41:23 MarkDuplicates Read 425,000,000 records. Elapsed time: 00:11:09s. Time for last 1,000,000: 1s. Last read position: chr15:42,173,807
INFO 2026-06-08 09:41:23 MarkDuplicates Tracking 542610 as yet unmatched pairs. 42496 records in RAM.
INFO 2026-06-08 09:41:24 MarkDuplicates Read 426,000,000 records. Elapsed time: 00:11:11s. Time for last 1,000,000: 1s. Last read position: chr15:43,527,109
INFO 2026-06-08 09:41:24 MarkDuplicates Tracking 540184 as yet unmatched pairs. 40057 records in RAM.
INFO 2026-06-08 09:41:26 MarkDuplicates Read 427,000,000 records. Elapsed time: 00:11:12s. Time for last 1,000,000: 1s. Last read position: chr15:44,413,325
INFO 2026-06-08 09:41:26 MarkDuplicates Tracking 538079 as yet unmatched pairs. 37945 records in RAM.
INFO 2026-06-08 09:41:27 MarkDuplicates Read 428,000,000 records. Elapsed time: 00:11:14s. Time for last 1,000,000: 1s. Last read position: chr15:49,283,707
INFO 2026-06-08 09:41:27 MarkDuplicates Tracking 534979 as yet unmatched pairs. 34836 records in RAM.
INFO 2026-06-08 09:41:29 MarkDuplicates Read 429,000,000 records. Elapsed time: 00:11:16s. Time for last 1,000,000: 1s. Last read position: chr15:56,111,456
INFO 2026-06-08 09:41:29 MarkDuplicates Tracking 532640 as yet unmatched pairs. 32495 records in RAM.
INFO 2026-06-08 09:41:31 MarkDuplicates Read 430,000,000 records. Elapsed time: 00:11:17s. Time for last 1,000,000: 1s. Last read position: chr15:60,354,183
INFO 2026-06-08 09:41:31 MarkDuplicates Tracking 530866 as yet unmatched pairs. 30712 records in RAM.
INFO 2026-06-08 09:41:32 MarkDuplicates Read 431,000,000 records. Elapsed time: 00:11:19s. Time for last 1,000,000: 1s. Last read position: chr15:64,156,817
INFO 2026-06-08 09:41:32 MarkDuplicates Tracking 530808 as yet unmatched pairs. 30628 records in RAM.
INFO 2026-06-08 09:41:34 MarkDuplicates Read 432,000,000 records. Elapsed time: 00:11:20s. Time for last 1,000,000: 1s. Last read position: chr15:66,499,500
INFO 2026-06-08 09:41:34 MarkDuplicates Tracking 526845 as yet unmatched pairs. 26658 records in RAM.
INFO 2026-06-08 09:41:36 MarkDuplicates Read 433,000,000 records. Elapsed time: 00:11:22s. Time for last 1,000,000: 1s. Last read position: chr15:71,898,549
INFO 2026-06-08 09:41:36 MarkDuplicates Tracking 522848 as yet unmatched pairs. 22651 records in RAM.
INFO 2026-06-08 09:41:37 MarkDuplicates Read 434,000,000 records. Elapsed time: 00:11:23s. Time for last 1,000,000: 1s. Last read position: chr15:73,703,972
INFO 2026-06-08 09:41:37 MarkDuplicates Tracking 522517 as yet unmatched pairs. 22314 records in RAM.
INFO 2026-06-08 09:41:39 MarkDuplicates Read 435,000,000 records. Elapsed time: 00:11:25s. Time for last 1,000,000: 1s. Last read position: chr15:74,175,639
INFO 2026-06-08 09:41:39 MarkDuplicates Tracking 522127 as yet unmatched pairs. 21921 records in RAM.
INFO 2026-06-08 09:41:40 MarkDuplicates Read 436,000,000 records. Elapsed time: 00:11:27s. Time for last 1,000,000: 1s. Last read position: chr15:75,676,511
INFO 2026-06-08 09:41:40 MarkDuplicates Tracking 514334 as yet unmatched pairs. 14119 records in RAM.
INFO 2026-06-08 09:41:42 MarkDuplicates Read 437,000,000 records. Elapsed time: 00:11:29s. Time for last 1,000,000: 1s. Last read position: chr15:78,878,259
INFO 2026-06-08 09:41:42 MarkDuplicates Tracking 513280 as yet unmatched pairs. 13056 records in RAM.
INFO 2026-06-08 09:41:44 MarkDuplicates Read 438,000,000 records. Elapsed time: 00:11:30s. Time for last 1,000,000: 1s. Last read position: chr15:84,784,638
INFO 2026-06-08 09:41:44 MarkDuplicates Tracking 509224 as yet unmatched pairs. 8994 records in RAM.
INFO 2026-06-08 09:41:45 MarkDuplicates Read 439,000,000 records. Elapsed time: 00:11:32s. Time for last 1,000,000: 1s. Last read position: chr15:88,913,242
INFO 2026-06-08 09:41:45 MarkDuplicates Tracking 505988 as yet unmatched pairs. 5746 records in RAM.
INFO 2026-06-08 09:41:47 MarkDuplicates Read 440,000,000 records. Elapsed time: 00:11:33s. Time for last 1,000,000: 1s. Last read position: chr15:91,000,579
INFO 2026-06-08 09:41:47 MarkDuplicates Tracking 503388 as yet unmatched pairs. 3145 records in RAM.
INFO 2026-06-08 09:41:48 MarkDuplicates Read 441,000,000 records. Elapsed time: 00:11:35s. Time for last 1,000,000: 1s. Last read position: chr15:101,295,077
INFO 2026-06-08 09:41:48 MarkDuplicates Tracking 500391 as yet unmatched pairs. 138 records in RAM.
INFO 2026-06-08 09:41:51 MarkDuplicates Read 442,000,000 records. Elapsed time: 00:11:37s. Time for last 1,000,000: 2s. Last read position: chr16:683,720
INFO 2026-06-08 09:41:51 MarkDuplicates Tracking 497731 as yet unmatched pairs. 64060 records in RAM.
INFO 2026-06-08 09:41:52 MarkDuplicates Read 443,000,000 records. Elapsed time: 00:11:39s. Time for last 1,000,000: 1s. Last read position: chr16:2,036,327
INFO 2026-06-08 09:41:52 MarkDuplicates Tracking 494169 as yet unmatched pairs. 60491 records in RAM.
INFO 2026-06-08 09:41:54 MarkDuplicates Read 444,000,000 records. Elapsed time: 00:11:40s. Time for last 1,000,000: 1s. Last read position: chr16:2,519,574
INFO 2026-06-08 09:41:54 MarkDuplicates Tracking 492413 as yet unmatched pairs. 58733 records in RAM.
INFO 2026-06-08 09:41:55 MarkDuplicates Read 445,000,000 records. Elapsed time: 00:11:42s. Time for last 1,000,000: 1s. Last read position: chr16:2,767,734
INFO 2026-06-08 09:41:55 MarkDuplicates Tracking 490128 as yet unmatched pairs. 56446 records in RAM.
INFO 2026-06-08 09:41:57 MarkDuplicates Read 446,000,000 records. Elapsed time: 00:11:43s. Time for last 1,000,000: 1s. Last read position: chr16:4,336,981
INFO 2026-06-08 09:41:57 MarkDuplicates Tracking 485880 as yet unmatched pairs. 52182 records in RAM.
INFO 2026-06-08 09:41:58 MarkDuplicates Read 447,000,000 records. Elapsed time: 00:11:45s. Time for last 1,000,000: 1s. Last read position: chr16:11,837,992
INFO 2026-06-08 09:41:58 MarkDuplicates Tracking 483435 as yet unmatched pairs. 49731 records in RAM.
INFO 2026-06-08 09:42:00 MarkDuplicates Read 448,000,000 records. Elapsed time: 00:11:46s. Time for last 1,000,000: 1s. Last read position: chr16:14,935,163
INFO 2026-06-08 09:42:00 MarkDuplicates Tracking 481439 as yet unmatched pairs. 47729 records in RAM.
INFO 2026-06-08 09:42:01 MarkDuplicates Read 449,000,000 records. Elapsed time: 00:11:47s. Time for last 1,000,000: 1s. Last read position: chr16:16,319,525
INFO 2026-06-08 09:42:01 MarkDuplicates Tracking 479771 as yet unmatched pairs. 46055 records in RAM.
INFO 2026-06-08 09:42:02 MarkDuplicates Read 450,000,000 records. Elapsed time: 00:11:49s. Time for last 1,000,000: 1s. Last read position: chr16:18,347,607
INFO 2026-06-08 09:42:02 MarkDuplicates Tracking 480016 as yet unmatched pairs. 46297 records in RAM.
INFO 2026-06-08 09:42:03 MarkDuplicates Read 451,000,000 records. Elapsed time: 00:11:50s. Time for last 1,000,000: 1s. Last read position: chr16:18,809,534
INFO 2026-06-08 09:42:03 MarkDuplicates Tracking 478257 as yet unmatched pairs. 44537 records in RAM.
INFO 2026-06-08 09:42:05 MarkDuplicates Read 452,000,000 records. Elapsed time: 00:11:51s. Time for last 1,000,000: 1s. Last read position: chr16:21,459,799
INFO 2026-06-08 09:42:05 MarkDuplicates Tracking 475742 as yet unmatched pairs. 42019 records in RAM.
INFO 2026-06-08 09:42:06 MarkDuplicates Read 453,000,000 records. Elapsed time: 00:11:52s. Time for last 1,000,000: 1s. Last read position: chr16:22,527,949
INFO 2026-06-08 09:42:06 MarkDuplicates Tracking 474338 as yet unmatched pairs. 40614 records in RAM.
INFO 2026-06-08 09:42:07 MarkDuplicates Read 454,000,000 records. Elapsed time: 00:11:54s. Time for last 1,000,000: 1s. Last read position: chr16:27,488,413
INFO 2026-06-08 09:42:07 MarkDuplicates Tracking 472905 as yet unmatched pairs. 39174 records in RAM.
INFO 2026-06-08 09:42:09 MarkDuplicates Read 455,000,000 records. Elapsed time: 00:11:55s. Time for last 1,000,000: 1s. Last read position: chr16:28,866,695
INFO 2026-06-08 09:42:09 MarkDuplicates Tracking 470478 as yet unmatched pairs. 36739 records in RAM.
INFO 2026-06-08 09:42:10 MarkDuplicates Read 456,000,000 records. Elapsed time: 00:11:57s. Time for last 1,000,000: 1s. Last read position: chr16:29,807,535
INFO 2026-06-08 09:42:10 MarkDuplicates Tracking 470149 as yet unmatched pairs. 36396 records in RAM.
INFO 2026-06-08 09:42:12 MarkDuplicates Read 457,000,000 records. Elapsed time: 00:11:58s. Time for last 1,000,000: 1s. Last read position: chr16:30,090,752
INFO 2026-06-08 09:42:12 MarkDuplicates Tracking 465451 as yet unmatched pairs. 31698 records in RAM.
INFO 2026-06-08 09:42:13 MarkDuplicates Read 458,000,000 records. Elapsed time: 00:11:59s. Time for last 1,000,000: 1s. Last read position: chr16:30,724,744
INFO 2026-06-08 09:42:13 MarkDuplicates Tracking 463663 as yet unmatched pairs. 29901 records in RAM.
INFO 2026-06-08 09:42:15 MarkDuplicates Read 459,000,000 records. Elapsed time: 00:12:01s. Time for last 1,000,000: 1s. Last read position: chr16:31,189,679
INFO 2026-06-08 09:42:15 MarkDuplicates Tracking 466532 as yet unmatched pairs. 32764 records in RAM.
INFO 2026-06-08 09:42:16 MarkDuplicates Read 460,000,000 records. Elapsed time: 00:12:02s. Time for last 1,000,000: 1s. Last read position: chr16:48,561,107
INFO 2026-06-08 09:42:16 MarkDuplicates Tracking 458212 as yet unmatched pairs. 24443 records in RAM.
INFO 2026-06-08 09:42:18 MarkDuplicates Read 461,000,000 records. Elapsed time: 00:12:04s. Time for last 1,000,000: 1s. Last read position: chr16:56,618,655
INFO 2026-06-08 09:42:18 MarkDuplicates Tracking 455308 as yet unmatched pairs. 21533 records in RAM.
INFO 2026-06-08 09:42:19 MarkDuplicates Read 462,000,000 records. Elapsed time: 00:12:06s. Time for last 1,000,000: 1s. Last read position: chr16:66,558,215
INFO 2026-06-08 09:42:19 MarkDuplicates Tracking 453772 as yet unmatched pairs. 19987 records in RAM.
INFO 2026-06-08 09:42:21 MarkDuplicates Read 463,000,000 records. Elapsed time: 00:12:07s. Time for last 1,000,000: 1s. Last read position: chr16:67,868,366
INFO 2026-06-08 09:42:21 MarkDuplicates Tracking 450555 as yet unmatched pairs. 16765 records in RAM.
INFO 2026-06-08 09:42:23 MarkDuplicates Read 464,000,000 records. Elapsed time: 00:12:09s. Time for last 1,000,000: 1s. Last read position: chr16:70,156,607
INFO 2026-06-08 09:42:23 MarkDuplicates Tracking 447260 as yet unmatched pairs. 13466 records in RAM.
INFO 2026-06-08 09:42:24 MarkDuplicates Read 465,000,000 records. Elapsed time: 00:12:10s. Time for last 1,000,000: 1s. Last read position: chr16:72,797,048
INFO 2026-06-08 09:42:24 MarkDuplicates Tracking 444857 as yet unmatched pairs. 11054 records in RAM.
INFO 2026-06-08 09:42:26 MarkDuplicates Read 466,000,000 records. Elapsed time: 00:12:12s. Time for last 1,000,000: 1s. Last read position: chr16:77,788,657
INFO 2026-06-08 09:42:26 MarkDuplicates Tracking 441796 as yet unmatched pairs. 7988 records in RAM.
INFO 2026-06-08 09:42:27 MarkDuplicates Read 467,000,000 records. Elapsed time: 00:12:14s. Time for last 1,000,000: 1s. Last read position: chr16:87,417,677
INFO 2026-06-08 09:42:27 MarkDuplicates Tracking 439281 as yet unmatched pairs. 5464 records in RAM.
INFO 2026-06-08 09:42:29 MarkDuplicates Read 468,000,000 records. Elapsed time: 00:12:15s. Time for last 1,000,000: 1s. Last read position: chr16:89,284,255
INFO 2026-06-08 09:42:29 MarkDuplicates Tracking 436432 as yet unmatched pairs. 2612 records in RAM.
INFO 2026-06-08 09:42:32 MarkDuplicates Read 469,000,000 records. Elapsed time: 00:12:18s. Time for last 1,000,000: 2s. Last read position: chr17:1,345,271
INFO 2026-06-08 09:42:32 MarkDuplicates Tracking 434443 as yet unmatched pairs. 157020 records in RAM.
INFO 2026-06-08 09:42:33 MarkDuplicates Read 470,000,000 records. Elapsed time: 00:12:20s. Time for last 1,000,000: 1s. Last read position: chr17:1,675,726
INFO 2026-06-08 09:42:33 MarkDuplicates Tracking 431553 as yet unmatched pairs. 154129 records in RAM.
INFO 2026-06-08 09:42:35 MarkDuplicates Read 471,000,000 records. Elapsed time: 00:12:21s. Time for last 1,000,000: 1s. Last read position: chr17:3,590,977
INFO 2026-06-08 09:42:35 MarkDuplicates Tracking 427502 as yet unmatched pairs. 150076 records in RAM.
INFO 2026-06-08 09:42:37 MarkDuplicates Read 472,000,000 records. Elapsed time: 00:12:23s. Time for last 1,000,000: 1s. Last read position: chr17:5,092,032
INFO 2026-06-08 09:42:37 MarkDuplicates Tracking 424719 as yet unmatched pairs. 147286 records in RAM.
INFO 2026-06-08 09:42:38 MarkDuplicates Read 473,000,000 records. Elapsed time: 00:12:25s. Time for last 1,000,000: 1s. Last read position: chr17:7,256,993
INFO 2026-06-08 09:42:38 MarkDuplicates Tracking 422596 as yet unmatched pairs. 145160 records in RAM.
INFO 2026-06-08 09:42:40 MarkDuplicates Read 474,000,000 records. Elapsed time: 00:12:26s. Time for last 1,000,000: 1s. Last read position: chr17:7,557,544
INFO 2026-06-08 09:42:40 MarkDuplicates Tracking 419935 as yet unmatched pairs. 142498 records in RAM.
INFO 2026-06-08 09:42:42 MarkDuplicates Read 475,000,000 records. Elapsed time: 00:12:28s. Time for last 1,000,000: 1s. Last read position: chr17:7,905,881
INFO 2026-06-08 09:42:42 MarkDuplicates Tracking 417490 as yet unmatched pairs. 140044 records in RAM.
INFO 2026-06-08 09:42:43 MarkDuplicates Read 476,000,000 records. Elapsed time: 00:12:29s. Time for last 1,000,000: 1s. Last read position: chr17:10,524,817
INFO 2026-06-08 09:42:43 MarkDuplicates Tracking 414264 as yet unmatched pairs. 136817 records in RAM.
INFO 2026-06-08 09:42:45 MarkDuplicates Read 477,000,000 records. Elapsed time: 00:12:31s. Time for last 1,000,000: 1s. Last read position: chr17:17,142,675
INFO 2026-06-08 09:42:45 MarkDuplicates Tracking 412315 as yet unmatched pairs. 134863 records in RAM.
INFO 2026-06-08 09:42:46 MarkDuplicates Read 478,000,000 records. Elapsed time: 00:12:32s. Time for last 1,000,000: 1s. Last read position: chr17:18,670,796
INFO 2026-06-08 09:42:46 MarkDuplicates Tracking 408708 as yet unmatched pairs. 131254 records in RAM.
INFO 2026-06-08 09:42:48 MarkDuplicates Read 479,000,000 records. Elapsed time: 00:12:34s. Time for last 1,000,000: 1s. Last read position: chr17:28,633,281
INFO 2026-06-08 09:42:48 MarkDuplicates Tracking 406630 as yet unmatched pairs. 129172 records in RAM.
INFO 2026-06-08 09:42:49 MarkDuplicates Read 480,000,000 records. Elapsed time: 00:12:35s. Time for last 1,000,000: 1s. Last read position: chr17:30,731,986
INFO 2026-06-08 09:42:49 MarkDuplicates Tracking 404377 as yet unmatched pairs. 126917 records in RAM.
INFO 2026-06-08 09:42:51 MarkDuplicates Read 481,000,000 records. Elapsed time: 00:12:37s. Time for last 1,000,000: 1s. Last read position: chr17:32,771,184
INFO 2026-06-08 09:42:51 MarkDuplicates Tracking 401674 as yet unmatched pairs. 124210 records in RAM.
INFO 2026-06-08 09:42:52 MarkDuplicates Read 482,000,000 records. Elapsed time: 00:12:39s. Time for last 1,000,000: 1s. Last read position: chr17:36,579,317
INFO 2026-06-08 09:42:52 MarkDuplicates Tracking 399058 as yet unmatched pairs. 121593 records in RAM.
INFO 2026-06-08 09:42:54 MarkDuplicates Read 483,000,000 records. Elapsed time: 00:12:40s. Time for last 1,000,000: 1s. Last read position: chr17:38,890,462
INFO 2026-06-08 09:42:54 MarkDuplicates Tracking 396969 as yet unmatched pairs. 119501 records in RAM.
INFO 2026-06-08 09:42:55 MarkDuplicates Read 484,000,000 records. Elapsed time: 00:12:42s. Time for last 1,000,000: 1s. Last read position: chr17:40,096,499
INFO 2026-06-08 09:42:55 MarkDuplicates Tracking 393815 as yet unmatched pairs. 116344 records in RAM.
INFO 2026-06-08 09:42:57 MarkDuplicates Read 485,000,000 records. Elapsed time: 00:12:44s. Time for last 1,000,000: 1s. Last read position: chr17:41,820,321
INFO 2026-06-08 09:42:57 MarkDuplicates Tracking 392474 as yet unmatched pairs. 115002 records in RAM.
INFO 2026-06-08 09:42:59 MarkDuplicates Read 486,000,000 records. Elapsed time: 00:12:45s. Time for last 1,000,000: 1s. Last read position: chr17:42,538,709
INFO 2026-06-08 09:42:59 MarkDuplicates Tracking 388155 as yet unmatched pairs. 110681 records in RAM.
INFO 2026-06-08 09:43:00 MarkDuplicates Read 487,000,000 records. Elapsed time: 00:12:47s. Time for last 1,000,000: 1s. Last read position: chr17:43,533,233
INFO 2026-06-08 09:43:00 MarkDuplicates Tracking 387372 as yet unmatched pairs. 109893 records in RAM.
INFO 2026-06-08 09:43:02 MarkDuplicates Read 488,000,000 records. Elapsed time: 00:12:48s. Time for last 1,000,000: 1s. Last read position: chr17:44,860,521
INFO 2026-06-08 09:43:02 MarkDuplicates Tracking 382689 as yet unmatched pairs. 105203 records in RAM.
INFO 2026-06-08 09:43:04 MarkDuplicates Read 489,000,000 records. Elapsed time: 00:12:50s. Time for last 1,000,000: 1s. Last read position: chr17:47,138,823
INFO 2026-06-08 09:43:04 MarkDuplicates Tracking 380579 as yet unmatched pairs. 103085 records in RAM.
INFO 2026-06-08 09:43:05 MarkDuplicates Read 490,000,000 records. Elapsed time: 00:12:52s. Time for last 1,000,000: 1s. Last read position: chr17:49,044,073
INFO 2026-06-08 09:43:05 MarkDuplicates Tracking 377917 as yet unmatched pairs. 100419 records in RAM.
INFO 2026-06-08 09:44:51 MarkDuplicates Read 491,000,000 records. Elapsed time: 00:14:38s. Time for last 1,000,000: 105s. Last read position: chr17:50,185,823
INFO 2026-06-08 09:44:51 MarkDuplicates Tracking 390170 as yet unmatched pairs. 112670 records in RAM.
INFO 2026-06-08 09:44:53 MarkDuplicates Read 492,000,000 records. Elapsed time: 00:14:39s. Time for last 1,000,000: 1s. Last read position: chr17:50,186,740
INFO 2026-06-08 09:44:53 MarkDuplicates Tracking 394337 as yet unmatched pairs. 116835 records in RAM.
INFO 2026-06-08 09:44:54 MarkDuplicates Read 493,000,000 records. Elapsed time: 00:14:41s. Time for last 1,000,000: 1s. Last read position: chr17:50,187,112
INFO 2026-06-08 09:44:54 MarkDuplicates Tracking 421276 as yet unmatched pairs. 143768 records in RAM.
INFO 2026-06-08 09:44:56 MarkDuplicates Read 494,000,000 records. Elapsed time: 00:14:43s. Time for last 1,000,000: 1s. Last read position: chr17:50,188,095
INFO 2026-06-08 09:44:56 MarkDuplicates Tracking 428626 as yet unmatched pairs. 151114 records in RAM.
INFO 2026-06-08 09:44:58 MarkDuplicates Read 495,000,000 records. Elapsed time: 00:14:44s. Time for last 1,000,000: 1s. Last read position: chr17:50,188,770
INFO 2026-06-08 09:44:58 MarkDuplicates Tracking 413006 as yet unmatched pairs. 135492 records in RAM.
INFO 2026-06-08 09:44:59 MarkDuplicates Read 496,000,000 records. Elapsed time: 00:14:46s. Time for last 1,000,000: 1s. Last read position: chr17:50,189,376
INFO 2026-06-08 09:44:59 MarkDuplicates Tracking 397179 as yet unmatched pairs. 119665 records in RAM.
INFO 2026-06-08 09:45:01 MarkDuplicates Read 497,000,000 records. Elapsed time: 00:14:47s. Time for last 1,000,000: 1s. Last read position: chr17:50,189,689
INFO 2026-06-08 09:45:01 MarkDuplicates Tracking 430115 as yet unmatched pairs. 152598 records in RAM.
INFO 2026-06-08 09:45:03 MarkDuplicates Read 498,000,000 records. Elapsed time: 00:14:49s. Time for last 1,000,000: 1s. Last read position: chr17:50,190,079
INFO 2026-06-08 09:45:03 MarkDuplicates Tracking 413009 as yet unmatched pairs. 135487 records in RAM.
INFO 2026-06-08 09:45:04 MarkDuplicates Read 499,000,000 records. Elapsed time: 00:14:51s. Time for last 1,000,000: 1s. Last read position: chr17:50,190,891
INFO 2026-06-08 09:45:04 MarkDuplicates Tracking 396215 as yet unmatched pairs. 118686 records in RAM.
INFO 2026-06-08 09:45:06 MarkDuplicates Read 500,000,000 records. Elapsed time: 00:14:52s. Time for last 1,000,000: 1s. Last read position: chr17:50,191,866
INFO 2026-06-08 09:45:06 MarkDuplicates Tracking 410101 as yet unmatched pairs. 132570 records in RAM.
INFO 2026-06-08 09:45:07 MarkDuplicates Read 501,000,000 records. Elapsed time: 00:14:54s. Time for last 1,000,000: 1s. Last read position: chr17:50,192,796
INFO 2026-06-08 09:45:07 MarkDuplicates Tracking 408267 as yet unmatched pairs. 130735 records in RAM.
INFO 2026-06-08 09:45:09 MarkDuplicates Read 502,000,000 records. Elapsed time: 00:14:56s. Time for last 1,000,000: 1s. Last read position: chr17:50,193,982
INFO 2026-06-08 09:45:09 MarkDuplicates Tracking 410863 as yet unmatched pairs. 133330 records in RAM.
INFO 2026-06-08 09:45:11 MarkDuplicates Read 503,000,000 records. Elapsed time: 00:14:57s. Time for last 1,000,000: 1s. Last read position: chr17:50,194,396
INFO 2026-06-08 09:45:11 MarkDuplicates Tracking 399603 as yet unmatched pairs. 122062 records in RAM.
INFO 2026-06-08 09:45:12 MarkDuplicates Read 504,000,000 records. Elapsed time: 00:14:59s. Time for last 1,000,000: 1s. Last read position: chr17:50,194,784
INFO 2026-06-08 09:45:12 MarkDuplicates Tracking 394379 as yet unmatched pairs. 116838 records in RAM.
INFO 2026-06-08 09:45:14 MarkDuplicates Read 505,000,000 records. Elapsed time: 00:15:01s. Time for last 1,000,000: 1s. Last read position: chr17:50,195,469
INFO 2026-06-08 09:45:14 MarkDuplicates Tracking 377716 as yet unmatched pairs. 100175 records in RAM.
INFO 2026-06-08 09:45:16 MarkDuplicates Read 506,000,000 records. Elapsed time: 00:15:02s. Time for last 1,000,000: 1s. Last read position: chr17:50,196,154
INFO 2026-06-08 09:45:16 MarkDuplicates Tracking 393215 as yet unmatched pairs. 115669 records in RAM.
INFO 2026-06-08 09:45:18 MarkDuplicates Read 507,000,000 records. Elapsed time: 00:15:04s. Time for last 1,000,000: 1s. Last read position: chr17:50,196,498
INFO 2026-06-08 09:45:18 MarkDuplicates Tracking 380443 as yet unmatched pairs. 102892 records in RAM.
INFO 2026-06-08 09:45:19 MarkDuplicates Read 508,000,000 records. Elapsed time: 00:15:05s. Time for last 1,000,000: 1s. Last read position: chr17:50,197,046
INFO 2026-06-08 09:45:19 MarkDuplicates Tracking 415708 as yet unmatched pairs. 138152 records in RAM.
INFO 2026-06-08 09:45:21 MarkDuplicates Read 509,000,000 records. Elapsed time: 00:15:07s. Time for last 1,000,000: 1s. Last read position: chr17:50,198,175
INFO 2026-06-08 09:45:21 MarkDuplicates Tracking 359333 as yet unmatched pairs. 81769 records in RAM.
INFO 2026-06-08 09:45:22 MarkDuplicates Read 510,000,000 records. Elapsed time: 00:15:09s. Time for last 1,000,000: 1s. Last read position: chr17:50,199,294
INFO 2026-06-08 09:45:22 MarkDuplicates Tracking 367821 as yet unmatched pairs. 90252 records in RAM.
INFO 2026-06-08 09:45:24 MarkDuplicates Read 511,000,000 records. Elapsed time: 00:15:11s. Time for last 1,000,000: 1s. Last read position: chr17:50,199,920
INFO 2026-06-08 09:45:24 MarkDuplicates Tracking 338867 as yet unmatched pairs. 61293 records in RAM.
INFO 2026-06-08 09:45:26 MarkDuplicates Read 512,000,000 records. Elapsed time: 00:15:12s. Time for last 1,000,000: 1s. Last read position: chr17:57,839,576
INFO 2026-06-08 09:45:26 MarkDuplicates Tracking 313352 as yet unmatched pairs. 35770 records in RAM.
INFO 2026-06-08 09:45:27 MarkDuplicates Read 513,000,000 records. Elapsed time: 00:15:14s. Time for last 1,000,000: 1s. Last read position: chr17:59,668,855
INFO 2026-06-08 09:45:27 MarkDuplicates Tracking 315139 as yet unmatched pairs. 37557 records in RAM.
INFO 2026-06-08 09:45:29 MarkDuplicates Read 514,000,000 records. Elapsed time: 00:15:15s. Time for last 1,000,000: 1s. Last read position: chr17:60,181,649
INFO 2026-06-08 09:45:29 MarkDuplicates Tracking 308535 as yet unmatched pairs. 30950 records in RAM.
INFO 2026-06-08 09:45:30 MarkDuplicates Read 515,000,000 records. Elapsed time: 00:15:17s. Time for last 1,000,000: 1s. Last read position: chr17:62,682,242
INFO 2026-06-08 09:45:30 MarkDuplicates Tracking 306524 as yet unmatched pairs. 28931 records in RAM.
INFO 2026-06-08 09:45:32 MarkDuplicates Read 516,000,000 records. Elapsed time: 00:15:18s. Time for last 1,000,000: 1s. Last read position: chr17:64,502,946
INFO 2026-06-08 09:45:32 MarkDuplicates Tracking 303659 as yet unmatched pairs. 26065 records in RAM.
INFO 2026-06-08 09:45:33 MarkDuplicates Read 517,000,000 records. Elapsed time: 00:15:20s. Time for last 1,000,000: 1s. Last read position: chr17:68,420,418
INFO 2026-06-08 09:45:33 MarkDuplicates Tracking 300061 as yet unmatched pairs. 22461 records in RAM.
INFO 2026-06-08 09:45:35 MarkDuplicates Read 518,000,000 records. Elapsed time: 00:15:22s. Time for last 1,000,000: 1s. Last read position: chr17:69,020,468
INFO 2026-06-08 09:45:35 MarkDuplicates Tracking 297333 as yet unmatched pairs. 19733 records in RAM.
INFO 2026-06-08 09:45:37 MarkDuplicates Read 519,000,000 records. Elapsed time: 00:15:23s. Time for last 1,000,000: 1s. Last read position: chr17:75,667,407
INFO 2026-06-08 09:45:37 MarkDuplicates Tracking 294711 as yet unmatched pairs. 17102 records in RAM.
INFO 2026-06-08 09:45:38 MarkDuplicates Read 520,000,000 records. Elapsed time: 00:15:25s. Time for last 1,000,000: 1s. Last read position: chr17:77,203,607
INFO 2026-06-08 09:45:38 MarkDuplicates Tracking 292076 as yet unmatched pairs. 14466 records in RAM.
INFO 2026-06-08 09:45:40 MarkDuplicates Read 521,000,000 records. Elapsed time: 00:15:26s. Time for last 1,000,000: 1s. Last read position: chr17:79,834,808
INFO 2026-06-08 09:45:40 MarkDuplicates Tracking 288857 as yet unmatched pairs. 11238 records in RAM.
INFO 2026-06-08 09:45:41 MarkDuplicates Read 522,000,000 records. Elapsed time: 00:15:28s. Time for last 1,000,000: 1s. Last read position: chr17:81,110,930
INFO 2026-06-08 09:45:41 MarkDuplicates Tracking 286066 as yet unmatched pairs. 8445 records in RAM.
INFO 2026-06-08 09:45:43 MarkDuplicates Read 523,000,000 records. Elapsed time: 00:15:29s. Time for last 1,000,000: 1s. Last read position: chr17:81,845,143
INFO 2026-06-08 09:45:43 MarkDuplicates Tracking 286257 as yet unmatched pairs. 8627 records in RAM.
INFO 2026-06-08 09:45:44 MarkDuplicates Read 524,000,000 records. Elapsed time: 00:15:31s. Time for last 1,000,000: 1s. Last read position: chr17:82,090,439
INFO 2026-06-08 09:45:44 MarkDuplicates Tracking 280135 as yet unmatched pairs. 2505 records in RAM.
INFO 2026-06-08 09:45:46 MarkDuplicates Read 525,000,000 records. Elapsed time: 00:15:32s. Time for last 1,000,000: 1s. Last read position: chr18:2,763,708
INFO 2026-06-08 09:45:46 MarkDuplicates Tracking 277232 as yet unmatched pairs. 16354 records in RAM.
INFO 2026-06-08 09:45:47 MarkDuplicates Read 526,000,000 records. Elapsed time: 00:15:34s. Time for last 1,000,000: 1s. Last read position: chr18:11,897,129
INFO 2026-06-08 09:45:47 MarkDuplicates Tracking 274538 as yet unmatched pairs. 13651 records in RAM.
INFO 2026-06-08 09:45:49 MarkDuplicates Read 527,000,000 records. Elapsed time: 00:15:35s. Time for last 1,000,000: 1s. Last read position: chr18:26,035,020
INFO 2026-06-08 09:45:49 MarkDuplicates Tracking 272464 as yet unmatched pairs. 11563 records in RAM.
INFO 2026-06-08 09:45:50 MarkDuplicates Read 528,000,000 records. Elapsed time: 00:15:37s. Time for last 1,000,000: 1s. Last read position: chr18:46,084,211
INFO 2026-06-08 09:45:50 MarkDuplicates Tracking 270860 as yet unmatched pairs. 9955 records in RAM.
INFO 2026-06-08 09:45:52 MarkDuplicates Read 529,000,000 records. Elapsed time: 00:15:38s. Time for last 1,000,000: 1s. Last read position: chr18:55,259,998
INFO 2026-06-08 09:45:52 MarkDuplicates Tracking 271473 as yet unmatched pairs. 10564 records in RAM.
INFO 2026-06-08 09:45:53 MarkDuplicates Read 530,000,000 records. Elapsed time: 00:15:40s. Time for last 1,000,000: 1s. Last read position: chr18:62,280,293
INFO 2026-06-08 09:45:53 MarkDuplicates Tracking 265123 as yet unmatched pairs. 4202 records in RAM.
INFO 2026-06-08 09:45:55 MarkDuplicates Read 531,000,000 records. Elapsed time: 00:15:41s. Time for last 1,000,000: 1s. Last read position: chr18:80,084,309
INFO 2026-06-08 09:45:55 MarkDuplicates Tracking 261083 as yet unmatched pairs. 154 records in RAM.
INFO 2026-06-08 09:45:57 MarkDuplicates Read 532,000,000 records. Elapsed time: 00:15:44s. Time for last 1,000,000: 2s. Last read position: chr19:1,108,195
INFO 2026-06-08 09:45:57 MarkDuplicates Tracking 258071 as yet unmatched pairs. 105047 records in RAM.
INFO 2026-06-08 09:45:59 MarkDuplicates Read 533,000,000 records. Elapsed time: 00:15:45s. Time for last 1,000,000: 1s. Last read position: chr19:1,827,275
INFO 2026-06-08 09:45:59 MarkDuplicates Tracking 254992 as yet unmatched pairs. 101963 records in RAM.
INFO 2026-06-08 09:46:00 MarkDuplicates Read 534,000,000 records. Elapsed time: 00:15:47s. Time for last 1,000,000: 1s. Last read position: chr19:2,806,976
INFO 2026-06-08 09:46:00 MarkDuplicates Tracking 251677 as yet unmatched pairs. 98647 records in RAM.
INFO 2026-06-08 09:46:02 MarkDuplicates Read 535,000,000 records. Elapsed time: 00:15:48s. Time for last 1,000,000: 1s. Last read position: chr19:4,352,954
INFO 2026-06-08 09:46:02 MarkDuplicates Tracking 248390 as yet unmatched pairs. 95355 records in RAM.
INFO 2026-06-08 09:46:03 MarkDuplicates Read 536,000,000 records. Elapsed time: 00:15:50s. Time for last 1,000,000: 1s. Last read position: chr19:5,667,368
INFO 2026-06-08 09:46:03 MarkDuplicates Tracking 245686 as yet unmatched pairs. 92651 records in RAM.
INFO 2026-06-08 09:46:05 MarkDuplicates Read 537,000,000 records. Elapsed time: 00:15:51s. Time for last 1,000,000: 1s. Last read position: chr19:7,646,331
INFO 2026-06-08 09:46:05 MarkDuplicates Tracking 242367 as yet unmatched pairs. 89326 records in RAM.
INFO 2026-06-08 09:46:06 MarkDuplicates Read 538,000,000 records. Elapsed time: 00:15:53s. Time for last 1,000,000: 1s. Last read position: chr19:10,003,694
INFO 2026-06-08 09:46:06 MarkDuplicates Tracking 239464 as yet unmatched pairs. 86421 records in RAM.
INFO 2026-06-08 09:46:08 MarkDuplicates Read 539,000,000 records. Elapsed time: 00:15:55s. Time for last 1,000,000: 1s. Last read position: chr19:10,718,236
INFO 2026-06-08 09:46:08 MarkDuplicates Tracking 237070 as yet unmatched pairs. 84027 records in RAM.
INFO 2026-06-08 09:46:10 MarkDuplicates Read 540,000,000 records. Elapsed time: 00:15:56s. Time for last 1,000,000: 1s. Last read position: chr19:11,233,228
INFO 2026-06-08 09:46:10 MarkDuplicates Tracking 234690 as yet unmatched pairs. 81642 records in RAM.
INFO 2026-06-08 09:46:11 MarkDuplicates Read 541,000,000 records. Elapsed time: 00:15:58s. Time for last 1,000,000: 1s. Last read position: chr19:12,702,076
INFO 2026-06-08 09:46:11 MarkDuplicates Tracking 230856 as yet unmatched pairs. 77808 records in RAM.
INFO 2026-06-08 09:46:13 MarkDuplicates Read 542,000,000 records. Elapsed time: 00:15:59s. Time for last 1,000,000: 1s. Last read position: chr19:13,153,662
INFO 2026-06-08 09:46:13 MarkDuplicates Tracking 228309 as yet unmatched pairs. 75261 records in RAM.
INFO 2026-06-08 09:46:14 MarkDuplicates Read 543,000,000 records. Elapsed time: 00:16:01s. Time for last 1,000,000: 1s. Last read position: chr19:14,463,927
INFO 2026-06-08 09:46:14 MarkDuplicates Tracking 225215 as yet unmatched pairs. 72167 records in RAM.
INFO 2026-06-08 09:46:16 MarkDuplicates Read 544,000,000 records. Elapsed time: 00:16:02s. Time for last 1,000,000: 1s. Last read position: chr19:15,170,227
INFO 2026-06-08 09:46:16 MarkDuplicates Tracking 222419 as yet unmatched pairs. 69371 records in RAM.
INFO 2026-06-08 09:46:18 MarkDuplicates Read 545,000,000 records. Elapsed time: 00:16:04s. Time for last 1,000,000: 1s. Last read position: chr19:15,255,420
INFO 2026-06-08 09:46:18 MarkDuplicates Tracking 220813 as yet unmatched pairs. 67765 records in RAM.
INFO 2026-06-08 09:46:19 MarkDuplicates Read 546,000,000 records. Elapsed time: 00:16:06s. Time for last 1,000,000: 1s. Last read position: chr19:16,829,508
INFO 2026-06-08 09:46:19 MarkDuplicates Tracking 215984 as yet unmatched pairs. 62936 records in RAM.
INFO 2026-06-08 09:46:21 MarkDuplicates Read 547,000,000 records. Elapsed time: 00:16:07s. Time for last 1,000,000: 1s. Last read position: chr19:17,839,567
INFO 2026-06-08 09:46:21 MarkDuplicates Tracking 213687 as yet unmatched pairs. 60636 records in RAM.
INFO 2026-06-08 09:46:22 MarkDuplicates Read 548,000,000 records. Elapsed time: 00:16:09s. Time for last 1,000,000: 1s. Last read position: chr19:18,420,738
INFO 2026-06-08 09:46:22 MarkDuplicates Tracking 210735 as yet unmatched pairs. 57684 records in RAM.
INFO 2026-06-08 09:46:24 MarkDuplicates Read 549,000,000 records. Elapsed time: 00:16:10s. Time for last 1,000,000: 1s. Last read position: chr19:19,341,363
INFO 2026-06-08 09:46:24 MarkDuplicates Tracking 206523 as yet unmatched pairs. 53471 records in RAM.
INFO 2026-06-08 09:46:25 MarkDuplicates Read 550,000,000 records. Elapsed time: 00:16:12s. Time for last 1,000,000: 1s. Last read position: chr19:34,377,843
INFO 2026-06-08 09:46:25 MarkDuplicates Tracking 204914 as yet unmatched pairs. 51857 records in RAM.
INFO 2026-06-08 09:46:27 MarkDuplicates Read 551,000,000 records. Elapsed time: 00:16:13s. Time for last 1,000,000: 1s. Last read position: chr19:36,016,953
INFO 2026-06-08 09:46:27 MarkDuplicates Tracking 200916 as yet unmatched pairs. 47859 records in RAM.
INFO 2026-06-08 09:46:29 MarkDuplicates Read 552,000,000 records. Elapsed time: 00:16:15s. Time for last 1,000,000: 1s. Last read position: chr19:38,889,908
INFO 2026-06-08 09:46:29 MarkDuplicates Tracking 198592 as yet unmatched pairs. 45535 records in RAM.
INFO 2026-06-08 09:46:30 MarkDuplicates Read 553,000,000 records. Elapsed time: 00:16:17s. Time for last 1,000,000: 1s. Last read position: chr19:39,435,664
INFO 2026-06-08 09:46:30 MarkDuplicates Tracking 195074 as yet unmatched pairs. 42016 records in RAM.
INFO 2026-06-08 09:46:32 MarkDuplicates Read 554,000,000 records. Elapsed time: 00:16:18s. Time for last 1,000,000: 1s. Last read position: chr19:40,622,503
INFO 2026-06-08 09:46:32 MarkDuplicates Tracking 192604 as yet unmatched pairs. 39546 records in RAM.
INFO 2026-06-08 09:46:33 MarkDuplicates Read 555,000,000 records. Elapsed time: 00:16:20s. Time for last 1,000,000: 1s. Last read position: chr19:42,232,496
INFO 2026-06-08 09:46:33 MarkDuplicates Tracking 189503 as yet unmatched pairs. 36445 records in RAM.
INFO 2026-06-08 09:46:35 MarkDuplicates Read 556,000,000 records. Elapsed time: 00:16:21s. Time for last 1,000,000: 1s. Last read position: chr19:42,293,768
INFO 2026-06-08 09:46:35 MarkDuplicates Tracking 187508 as yet unmatched pairs. 34450 records in RAM.
INFO 2026-06-08 09:46:36 MarkDuplicates Read 557,000,000 records. Elapsed time: 00:16:23s. Time for last 1,000,000: 1s. Last read position: chr19:44,992,258
INFO 2026-06-08 09:46:36 MarkDuplicates Tracking 183456 as yet unmatched pairs. 30396 records in RAM.
INFO 2026-06-08 09:46:38 MarkDuplicates Read 558,000,000 records. Elapsed time: 00:16:24s. Time for last 1,000,000: 1s. Last read position: chr19:45,770,481
INFO 2026-06-08 09:46:38 MarkDuplicates Tracking 180554 as yet unmatched pairs. 27489 records in RAM.
INFO 2026-06-08 09:46:39 MarkDuplicates Read 559,000,000 records. Elapsed time: 00:16:26s. Time for last 1,000,000: 1s. Last read position: chr19:46,919,429
INFO 2026-06-08 09:46:39 MarkDuplicates Tracking 176981 as yet unmatched pairs. 23915 records in RAM.
INFO 2026-06-08 09:46:41 MarkDuplicates Read 560,000,000 records. Elapsed time: 00:16:27s. Time for last 1,000,000: 1s. Last read position: chr19:48,615,877
INFO 2026-06-08 09:46:41 MarkDuplicates Tracking 174523 as yet unmatched pairs. 21450 records in RAM.
INFO 2026-06-08 09:46:42 MarkDuplicates Read 561,000,000 records. Elapsed time: 00:16:29s. Time for last 1,000,000: 1s. Last read position: chr19:49,459,712
INFO 2026-06-08 09:46:42 MarkDuplicates Tracking 170880 as yet unmatched pairs. 17804 records in RAM.
INFO 2026-06-08 09:46:44 MarkDuplicates Read 562,000,000 records. Elapsed time: 00:16:30s. Time for last 1,000,000: 1s. Last read position: chr19:49,688,167
INFO 2026-06-08 09:46:44 MarkDuplicates Tracking 168456 as yet unmatched pairs. 15380 records in RAM.
INFO 2026-06-08 09:46:45 MarkDuplicates Read 563,000,000 records. Elapsed time: 00:16:32s. Time for last 1,000,000: 1s. Last read position: chr19:51,646,415
INFO 2026-06-08 09:46:45 MarkDuplicates Tracking 164513 as yet unmatched pairs. 11436 records in RAM.
INFO 2026-06-08 09:46:47 MarkDuplicates Read 564,000,000 records. Elapsed time: 00:16:33s. Time for last 1,000,000: 1s. Last read position: chr19:54,153,818
INFO 2026-06-08 09:46:47 MarkDuplicates Tracking 162102 as yet unmatched pairs. 9023 records in RAM.
INFO 2026-06-08 09:46:49 MarkDuplicates Read 565,000,000 records. Elapsed time: 00:16:35s. Time for last 1,000,000: 1s. Last read position: chr19:55,239,672
INFO 2026-06-08 09:46:49 MarkDuplicates Tracking 159151 as yet unmatched pairs. 6072 records in RAM.
INFO 2026-06-08 09:46:50 MarkDuplicates Read 566,000,000 records. Elapsed time: 00:16:37s. Time for last 1,000,000: 1s. Last read position: chr19:57,212,832
INFO 2026-06-08 09:46:50 MarkDuplicates Tracking 155812 as yet unmatched pairs. 2733 records in RAM.
INFO 2026-06-08 09:46:52 MarkDuplicates Read 567,000,000 records. Elapsed time: 00:16:38s. Time for last 1,000,000: 1s. Last read position: chr19:58,570,425
INFO 2026-06-08 09:46:52 MarkDuplicates Tracking 153287 as yet unmatched pairs. 202 records in RAM.
INFO 2026-06-08 09:46:53 MarkDuplicates Read 568,000,000 records. Elapsed time: 00:16:40s. Time for last 1,000,000: 1s. Last read position: chr20:2,964,945
INFO 2026-06-08 09:46:53 MarkDuplicates Tracking 150656 as yet unmatched pairs. 40716 records in RAM.
INFO 2026-06-08 09:46:55 MarkDuplicates Read 569,000,000 records. Elapsed time: 00:16:41s. Time for last 1,000,000: 1s. Last read position: chr20:8,729,118
INFO 2026-06-08 09:46:55 MarkDuplicates Tracking 146938 as yet unmatched pairs. 36997 records in RAM.
INFO 2026-06-08 09:46:57 MarkDuplicates Read 570,000,000 records. Elapsed time: 00:16:43s. Time for last 1,000,000: 1s. Last read position: chr20:18,548,760
INFO 2026-06-08 09:46:57 MarkDuplicates Tracking 144888 as yet unmatched pairs. 34944 records in RAM.
INFO 2026-06-08 09:46:58 MarkDuplicates Read 571,000,000 records. Elapsed time: 00:16:44s. Time for last 1,000,000: 1s. Last read position: chr20:32,158,481
INFO 2026-06-08 09:46:58 MarkDuplicates Tracking 142302 as yet unmatched pairs. 32357 records in RAM.
INFO 2026-06-08 09:47:00 MarkDuplicates Read 572,000,000 records. Elapsed time: 00:16:46s. Time for last 1,000,000: 1s. Last read position: chr20:35,035,121
INFO 2026-06-08 09:47:00 MarkDuplicates Tracking 139701 as yet unmatched pairs. 29754 records in RAM.
INFO 2026-06-08 09:47:01 MarkDuplicates Read 573,000,000 records. Elapsed time: 00:16:48s. Time for last 1,000,000: 1s. Last read position: chr20:36,904,185
INFO 2026-06-08 09:47:01 MarkDuplicates Tracking 136960 as yet unmatched pairs. 27009 records in RAM.
INFO 2026-06-08 09:47:03 MarkDuplicates Read 574,000,000 records. Elapsed time: 00:16:49s. Time for last 1,000,000: 1s. Last read position: chr20:43,463,351
INFO 2026-06-08 09:47:03 MarkDuplicates Tracking 134577 as yet unmatched pairs. 24621 records in RAM.
INFO 2026-06-08 09:47:04 MarkDuplicates Read 575,000,000 records. Elapsed time: 00:16:51s. Time for last 1,000,000: 1s. Last read position: chr20:46,010,061
INFO 2026-06-08 09:47:04 MarkDuplicates Tracking 134710 as yet unmatched pairs. 24754 records in RAM.
INFO 2026-06-08 09:47:06 MarkDuplicates Read 576,000,000 records. Elapsed time: 00:16:52s. Time for last 1,000,000: 1s. Last read position: chr20:46,014,231
INFO 2026-06-08 09:47:06 MarkDuplicates Tracking 138856 as yet unmatched pairs. 28900 records in RAM.
INFO 2026-06-08 09:47:07 MarkDuplicates Read 577,000,000 records. Elapsed time: 00:16:54s. Time for last 1,000,000: 1s. Last read position: chr20:49,949,248
INFO 2026-06-08 09:47:07 MarkDuplicates Tracking 126057 as yet unmatched pairs. 16100 records in RAM.
INFO 2026-06-08 09:47:09 MarkDuplicates Read 578,000,000 records. Elapsed time: 00:16:55s. Time for last 1,000,000: 1s. Last read position: chr20:56,473,325
INFO 2026-06-08 09:47:09 MarkDuplicates Tracking 123133 as yet unmatched pairs. 13176 records in RAM.
INFO 2026-06-08 09:47:10 MarkDuplicates Read 579,000,000 records. Elapsed time: 00:16:57s. Time for last 1,000,000: 1s. Last read position: chr20:58,903,725
INFO 2026-06-08 09:47:10 MarkDuplicates Tracking 127016 as yet unmatched pairs. 17058 records in RAM.
INFO 2026-06-08 09:47:12 MarkDuplicates Read 580,000,000 records. Elapsed time: 00:16:58s. Time for last 1,000,000: 1s. Last read position: chr20:59,322,391
INFO 2026-06-08 09:47:12 MarkDuplicates Tracking 123152 as yet unmatched pairs. 13194 records in RAM.
INFO 2026-06-08 09:47:13 MarkDuplicates Read 581,000,000 records. Elapsed time: 00:17:00s. Time for last 1,000,000: 1s. Last read position: chr20:63,285,932
INFO 2026-06-08 09:47:13 MarkDuplicates Tracking 114037 as yet unmatched pairs. 4078 records in RAM.
INFO 2026-06-08 09:47:15 MarkDuplicates Read 582,000,000 records. Elapsed time: 00:17:01s. Time for last 1,000,000: 1s. Last read position: chr20:64,027,046
INFO 2026-06-08 09:47:15 MarkDuplicates Tracking 110236 as yet unmatched pairs. 275 records in RAM.
INFO 2026-06-08 09:47:16 MarkDuplicates Read 583,000,000 records. Elapsed time: 00:17:03s. Time for last 1,000,000: 1s. Last read position: chr21:8,400,243
INFO 2026-06-08 09:47:16 MarkDuplicates Tracking 108946 as yet unmatched pairs. 28580 records in RAM.
INFO 2026-06-08 09:47:18 MarkDuplicates Read 584,000,000 records. Elapsed time: 00:17:04s. Time for last 1,000,000: 1s. Last read position: chr21:28,935,299
INFO 2026-06-08 09:47:18 MarkDuplicates Tracking 106731 as yet unmatched pairs. 26363 records in RAM.
INFO 2026-06-08 09:47:19 MarkDuplicates Read 585,000,000 records. Elapsed time: 00:17:05s. Time for last 1,000,000: 1s. Last read position: chr21:34,096,443
INFO 2026-06-08 09:47:19 MarkDuplicates Tracking 104806 as yet unmatched pairs. 24438 records in RAM.
INFO 2026-06-08 09:47:20 MarkDuplicates Read 586,000,000 records. Elapsed time: 00:17:07s. Time for last 1,000,000: 1s. Last read position: chr21:42,518,394
INFO 2026-06-08 09:47:20 MarkDuplicates Tracking 101508 as yet unmatched pairs. 21132 records in RAM.
INFO 2026-06-08 09:47:22 MarkDuplicates Read 587,000,000 records. Elapsed time: 00:17:08s. Time for last 1,000,000: 1s. Last read position: chr21:45,479,945
INFO 2026-06-08 09:47:22 MarkDuplicates Tracking 98874 as yet unmatched pairs. 18498 records in RAM.
INFO 2026-06-08 09:47:23 MarkDuplicates Read 588,000,000 records. Elapsed time: 00:17:10s. Time for last 1,000,000: 1s. Last read position: chr21:45,990,773
INFO 2026-06-08 09:47:23 MarkDuplicates Tracking 101599 as yet unmatched pairs. 21222 records in RAM.
INFO 2026-06-08 09:47:25 MarkDuplicates Read 589,000,000 records. Elapsed time: 00:17:12s. Time for last 1,000,000: 1s. Last read position: chr21:45,998,139
INFO 2026-06-08 09:47:25 MarkDuplicates Tracking 96653 as yet unmatched pairs. 16275 records in RAM.
INFO 2026-06-08 09:47:27 MarkDuplicates Read 590,000,000 records. Elapsed time: 00:17:13s. Time for last 1,000,000: 1s. Last read position: chr21:46,003,928
INFO 2026-06-08 09:47:27 MarkDuplicates Tracking 92341 as yet unmatched pairs. 11962 records in RAM.
INFO 2026-06-08 09:47:28 MarkDuplicates Read 591,000,000 records. Elapsed time: 00:17:15s. Time for last 1,000,000: 1s. Last read position: chr21:46,117,403
INFO 2026-06-08 09:47:28 MarkDuplicates Tracking 94359 as yet unmatched pairs. 13979 records in RAM.
INFO 2026-06-08 09:47:30 MarkDuplicates Read 592,000,000 records. Elapsed time: 00:17:16s. Time for last 1,000,000: 1s. Last read position: chr21:46,125,532
INFO 2026-06-08 09:47:30 MarkDuplicates Tracking 88100 as yet unmatched pairs. 7719 records in RAM.
INFO 2026-06-08 09:47:31 MarkDuplicates Read 593,000,000 records. Elapsed time: 00:17:18s. Time for last 1,000,000: 1s. Last read position: chr21:46,498,637
INFO 2026-06-08 09:47:31 MarkDuplicates Tracking 80964 as yet unmatched pairs. 581 records in RAM.
INFO 2026-06-08 09:47:33 MarkDuplicates Read 594,000,000 records. Elapsed time: 00:17:19s. Time for last 1,000,000: 1s. Last read position: chr22:21,592,894
INFO 2026-06-08 09:47:33 MarkDuplicates Tracking 78837 as yet unmatched pairs. 22544 records in RAM.
INFO 2026-06-08 09:47:35 MarkDuplicates Read 595,000,000 records. Elapsed time: 00:17:21s. Time for last 1,000,000: 1s. Last read position: chr22:27,982,749
INFO 2026-06-08 09:47:35 MarkDuplicates Tracking 75054 as yet unmatched pairs. 18761 records in RAM.
INFO 2026-06-08 09:47:36 MarkDuplicates Read 596,000,000 records. Elapsed time: 00:17:23s. Time for last 1,000,000: 1s. Last read position: chr22:30,012,427
INFO 2026-06-08 09:47:36 MarkDuplicates Tracking 72341 as yet unmatched pairs. 16047 records in RAM.
INFO 2026-06-08 09:47:38 MarkDuplicates Read 597,000,000 records. Elapsed time: 00:17:24s. Time for last 1,000,000: 1s. Last read position: chr22:36,028,368
INFO 2026-06-08 09:47:38 MarkDuplicates Tracking 69414 as yet unmatched pairs. 13120 records in RAM.
INFO 2026-06-08 09:47:39 MarkDuplicates Read 598,000,000 records. Elapsed time: 00:17:25s. Time for last 1,000,000: 1s. Last read position: chr22:37,805,929
INFO 2026-06-08 09:47:39 MarkDuplicates Tracking 68378 as yet unmatched pairs. 12084 records in RAM.
INFO 2026-06-08 09:47:40 MarkDuplicates Read 599,000,000 records. Elapsed time: 00:17:27s. Time for last 1,000,000: 1s. Last read position: chr22:40,411,312
INFO 2026-06-08 09:47:40 MarkDuplicates Tracking 63912 as yet unmatched pairs. 7617 records in RAM.
INFO 2026-06-08 09:47:42 MarkDuplicates Read 600,000,000 records. Elapsed time: 00:17:28s. Time for last 1,000,000: 1s. Last read position: chr22:42,835,386
INFO 2026-06-08 09:47:42 MarkDuplicates Tracking 61591 as yet unmatched pairs. 5296 records in RAM.
INFO 2026-06-08 09:47:44 MarkDuplicates Read 601,000,000 records. Elapsed time: 00:17:30s. Time for last 1,000,000: 1s. Last read position: chr22:50,447,072
INFO 2026-06-08 09:47:44 MarkDuplicates Tracking 58891 as yet unmatched pairs. 2596 records in RAM.
INFO 2026-06-08 09:47:46 MarkDuplicates Read 602,000,000 records. Elapsed time: 00:17:32s. Time for last 1,000,000: 2s. Last read position: chrX:2,723,327
INFO 2026-06-08 09:47:46 MarkDuplicates Tracking 57795 as yet unmatched pairs. 55174 records in RAM.
INFO 2026-06-08 09:47:47 MarkDuplicates Read 603,000,000 records. Elapsed time: 00:17:33s. Time for last 1,000,000: 1s. Last read position: chrX:8,570,694
INFO 2026-06-08 09:47:47 MarkDuplicates Tracking 52423 as yet unmatched pairs. 49802 records in RAM.
INFO 2026-06-08 09:47:49 MarkDuplicates Read 604,000,000 records. Elapsed time: 00:17:35s. Time for last 1,000,000: 1s. Last read position: chrX:20,132,259
INFO 2026-06-08 09:47:49 MarkDuplicates Tracking 50673 as yet unmatched pairs. 48050 records in RAM.
INFO 2026-06-08 09:47:50 MarkDuplicates Read 605,000,000 records. Elapsed time: 00:17:36s. Time for last 1,000,000: 1s. Last read position: chrX:40,062,250
INFO 2026-06-08 09:47:50 MarkDuplicates Tracking 48001 as yet unmatched pairs. 45378 records in RAM.
INFO 2026-06-08 09:47:52 MarkDuplicates Read 606,000,000 records. Elapsed time: 00:17:38s. Time for last 1,000,000: 1s. Last read position: chrX:41,347,711
INFO 2026-06-08 09:47:52 MarkDuplicates Tracking 46177 as yet unmatched pairs. 43553 records in RAM.
INFO 2026-06-08 09:47:53 MarkDuplicates Read 607,000,000 records. Elapsed time: 00:17:40s. Time for last 1,000,000: 1s. Last read position: chrX:47,512,992
INFO 2026-06-08 09:47:53 MarkDuplicates Tracking 42191 as yet unmatched pairs. 39567 records in RAM.
INFO 2026-06-08 09:47:55 MarkDuplicates Read 608,000,000 records. Elapsed time: 00:17:41s. Time for last 1,000,000: 1s. Last read position: chrX:49,031,427
INFO 2026-06-08 09:47:55 MarkDuplicates Tracking 40202 as yet unmatched pairs. 37578 records in RAM.
INFO 2026-06-08 09:47:56 MarkDuplicates Read 609,000,000 records. Elapsed time: 00:17:43s. Time for last 1,000,000: 1s. Last read position: chrX:52,186,790
INFO 2026-06-08 09:47:56 MarkDuplicates Tracking 37285 as yet unmatched pairs. 34661 records in RAM.
INFO 2026-06-08 09:47:58 MarkDuplicates Read 610,000,000 records. Elapsed time: 00:17:44s. Time for last 1,000,000: 1s. Last read position: chrX:53,558,731
INFO 2026-06-08 09:47:58 MarkDuplicates Tracking 35364 as yet unmatched pairs. 32740 records in RAM.
INFO 2026-06-08 09:47:59 MarkDuplicates Read 611,000,000 records. Elapsed time: 00:17:46s. Time for last 1,000,000: 1s. Last read position: chrX:55,006,998
INFO 2026-06-08 09:47:59 MarkDuplicates Tracking 31804 as yet unmatched pairs. 29180 records in RAM.
INFO 2026-06-08 09:48:01 MarkDuplicates Read 612,000,000 records. Elapsed time: 00:17:47s. Time for last 1,000,000: 1s. Last read position: chrX:71,240,873
INFO 2026-06-08 09:48:01 MarkDuplicates Tracking 29383 as yet unmatched pairs. 26759 records in RAM.
INFO 2026-06-08 09:48:02 MarkDuplicates Read 613,000,000 records. Elapsed time: 00:17:49s. Time for last 1,000,000: 1s. Last read position: chrX:73,584,434
INFO 2026-06-08 09:48:02 MarkDuplicates Tracking 26453 as yet unmatched pairs. 23829 records in RAM.
INFO 2026-06-08 09:48:04 MarkDuplicates Read 614,000,000 records. Elapsed time: 00:17:50s. Time for last 1,000,000: 1s. Last read position: chrX:78,040,668
INFO 2026-06-08 09:48:04 MarkDuplicates Tracking 24034 as yet unmatched pairs. 21410 records in RAM.
INFO 2026-06-08 09:48:05 MarkDuplicates Read 615,000,000 records. Elapsed time: 00:17:52s. Time for last 1,000,000: 1s. Last read position: chrX:100,646,340
INFO 2026-06-08 09:48:05 MarkDuplicates Tracking 22936 as yet unmatched pairs. 20312 records in RAM.
INFO 2026-06-08 09:48:07 MarkDuplicates Read 616,000,000 records. Elapsed time: 00:17:53s. Time for last 1,000,000: 1s. Last read position: chrX:105,831,107
INFO 2026-06-08 09:48:07 MarkDuplicates Tracking 19557 as yet unmatched pairs. 16933 records in RAM.
INFO 2026-06-08 09:48:08 MarkDuplicates Read 617,000,000 records. Elapsed time: 00:17:55s. Time for last 1,000,000: 1s. Last read position: chrX:118,741,111
INFO 2026-06-08 09:48:08 MarkDuplicates Tracking 16725 as yet unmatched pairs. 14101 records in RAM.
INFO 2026-06-08 09:48:10 MarkDuplicates Read 618,000,000 records. Elapsed time: 00:17:56s. Time for last 1,000,000: 1s. Last read position: chrX:124,380,757
INFO 2026-06-08 09:48:10 MarkDuplicates Tracking 14184 as yet unmatched pairs. 11560 records in RAM.
INFO 2026-06-08 09:48:11 MarkDuplicates Read 619,000,000 records. Elapsed time: 00:17:58s. Time for last 1,000,000: 1s. Last read position: chrX:136,511,659
INFO 2026-06-08 09:48:11 MarkDuplicates Tracking 11659 as yet unmatched pairs. 9035 records in RAM.
INFO 2026-06-08 09:48:13 MarkDuplicates Read 620,000,000 records. Elapsed time: 00:17:59s. Time for last 1,000,000: 1s. Last read position: chrX:153,690,444
INFO 2026-06-08 09:48:13 MarkDuplicates Tracking 9986 as yet unmatched pairs. 7361 records in RAM.
INFO 2026-06-08 09:48:14 MarkDuplicates Read 621,000,000 records. Elapsed time: 00:18:01s. Time for last 1,000,000: 1s. Last read position: chrX:154,357,447
INFO 2026-06-08 09:48:14 MarkDuplicates Tracking 7027 as yet unmatched pairs. 4402 records in RAM.
INFO 2026-06-08 09:48:16 MarkDuplicates Read 622,000,000 records. Elapsed time: 00:18:02s. Time for last 1,000,000: 1s. Last read position: chrX:154,542,221
INFO 2026-06-08 09:48:16 MarkDuplicates Tracking 3353 as yet unmatched pairs. 728 records in RAM.
INFO 2026-06-08 09:48:17 MarkDuplicates Read 623,000,000 records. Elapsed time: 00:18:04s. Time for last 1,000,000: 1s. Last read position: KI270711.1:18,349
INFO 2026-06-08 09:48:17 MarkDuplicates Tracking 1532 as yet unmatched pairs. 84 records in RAM.
INFO 2026-06-08 09:48:18 MarkDuplicates Read 623570196 records. 0 pairs never matched.
INFO 2026-06-08 09:48:56 MarkDuplicates After buildSortedReadEndLists freeMemory: 58269571120; totalMemory: 83214991360; maxMemory: 127137742848
INFO 2026-06-08 09:48:56 MarkDuplicates Will retain up to 2147483642 duplicate indices before spilling to disk.
INFO 2026-06-08 09:48:57 MarkDuplicates Traversing read pair information and detecting duplicates.
INFO 2026-06-08 09:49:20 OpticalDuplicateFinder Large duplicate set. size = 1264
INFO 2026-06-08 09:49:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,995
INFO 2026-06-08 09:49:20 OpticalDuplicateFinder Large duplicate set. size = 1004
INFO 2026-06-08 09:49:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,063
INFO 2026-06-08 09:49:20 OpticalDuplicateFinder Large duplicate set. size = 1323
INFO 2026-06-08 09:49:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,139
INFO 2026-06-08 09:49:20 OpticalDuplicateFinder Large duplicate set. size = 1003
INFO 2026-06-08 09:49:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,375
INFO 2026-06-08 09:49:21 OpticalDuplicateFinder Large duplicate set. size = 1240
INFO 2026-06-08 09:49:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,913
INFO 2026-06-08 09:49:21 OpticalDuplicateFinder Large duplicate set. size = 1071
INFO 2026-06-08 09:49:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,304
INFO 2026-06-08 09:49:22 OpticalDuplicateFinder Large duplicate set. size = 1008
INFO 2026-06-08 09:49:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,026
INFO 2026-06-08 09:49:22 OpticalDuplicateFinder Large duplicate set. size = 1012
INFO 2026-06-08 09:49:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,313
INFO 2026-06-08 09:49:33 OpticalDuplicateFinder Large duplicate set. size = 1047
INFO 2026-06-08 09:49:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,935
INFO 2026-06-08 09:49:33 OpticalDuplicateFinder Large duplicate set. size = 1026
INFO 2026-06-08 09:49:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,284
INFO 2026-06-08 09:49:33 OpticalDuplicateFinder Large duplicate set. size = 1032
INFO 2026-06-08 09:49:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,125
INFO 2026-06-08 09:49:41 OpticalDuplicateFinder Large duplicate set. size = 1001
INFO 2026-06-08 09:49:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,674
INFO 2026-06-08 09:49:41 OpticalDuplicateFinder Large duplicate set. size = 1198
INFO 2026-06-08 09:49:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,398
INFO 2026-06-08 09:49:41 OpticalDuplicateFinder Large duplicate set. size = 1186
INFO 2026-06-08 09:49:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,977
INFO 2026-06-08 09:49:41 OpticalDuplicateFinder Large duplicate set. size = 1597
INFO 2026-06-08 09:49:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,648
INFO 2026-06-08 09:49:41 OpticalDuplicateFinder Large duplicate set. size = 1243
INFO 2026-06-08 09:49:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-13,496
INFO 2026-06-08 09:49:42 OpticalDuplicateFinder Large duplicate set. size = 1142
INFO 2026-06-08 09:49:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,026
INFO 2026-06-08 09:49:42 OpticalDuplicateFinder Large duplicate set. size = 1026
INFO 2026-06-08 09:49:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,005
INFO 2026-06-08 09:49:42 OpticalDuplicateFinder Large duplicate set. size = 1180
INFO 2026-06-08 09:49:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,174
INFO 2026-06-08 09:49:42 OpticalDuplicateFinder Large duplicate set. size = 1544
INFO 2026-06-08 09:49:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,380
INFO 2026-06-08 09:49:42 OpticalDuplicateFinder Large duplicate set. size = 1247
INFO 2026-06-08 09:49:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,415
INFO 2026-06-08 09:49:42 OpticalDuplicateFinder Large duplicate set. size = 1418
INFO 2026-06-08 09:49:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,464
INFO 2026-06-08 09:49:42 OpticalDuplicateFinder Large duplicate set. size = 1192
INFO 2026-06-08 09:49:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,004
INFO 2026-06-08 09:49:42 OpticalDuplicateFinder Large duplicate set. size = 1139
INFO 2026-06-08 09:49:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,074
INFO 2026-06-08 09:49:43 OpticalDuplicateFinder Large duplicate set. size = 1013
INFO 2026-06-08 09:49:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,216
INFO 2026-06-08 09:49:43 OpticalDuplicateFinder Large duplicate set. size = 1196
INFO 2026-06-08 09:49:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,426
INFO 2026-06-08 09:49:43 OpticalDuplicateFinder Large duplicate set. size = 1298
INFO 2026-06-08 09:49:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,325
INFO 2026-06-08 09:49:43 OpticalDuplicateFinder Large duplicate set. size = 1579
INFO 2026-06-08 09:49:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,338
INFO 2026-06-08 09:49:43 OpticalDuplicateFinder Large duplicate set. size = 1333
INFO 2026-06-08 09:49:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,654
INFO 2026-06-08 09:49:43 OpticalDuplicateFinder Large duplicate set. size = 1334
INFO 2026-06-08 09:49:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,176
INFO 2026-06-08 09:49:43 OpticalDuplicateFinder Large duplicate set. size = 2009
INFO 2026-06-08 09:49:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,456
INFO 2026-06-08 09:49:43 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,148
INFO 2026-06-08 09:49:43 OpticalDuplicateFinder Large duplicate set. size = 1088
INFO 2026-06-08 09:49:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,798
INFO 2026-06-08 09:49:43 OpticalDuplicateFinder Large duplicate set. size = 1144
INFO 2026-06-08 09:49:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,591
INFO 2026-06-08 09:49:43 OpticalDuplicateFinder Large duplicate set. size = 1361
INFO 2026-06-08 09:49:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,420
INFO 2026-06-08 09:49:43 OpticalDuplicateFinder Large duplicate set. size = 1334
INFO 2026-06-08 09:49:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,403
INFO 2026-06-08 09:49:43 OpticalDuplicateFinder Large duplicate set. size = 2237
INFO 2026-06-08 09:49:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,301
INFO 2026-06-08 09:49:43 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,361
INFO 2026-06-08 09:49:43 OpticalDuplicateFinder Large duplicate set. size = 1085
INFO 2026-06-08 09:49:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,769
INFO 2026-06-08 09:49:43 OpticalDuplicateFinder Large duplicate set. size = 1382
INFO 2026-06-08 09:49:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,766
INFO 2026-06-08 09:49:43 OpticalDuplicateFinder Large duplicate set. size = 1095
INFO 2026-06-08 09:49:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,265
INFO 2026-06-08 09:49:43 OpticalDuplicateFinder Large duplicate set. size = 1111
INFO 2026-06-08 09:49:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,023
INFO 2026-06-08 09:49:43 OpticalDuplicateFinder Large duplicate set. size = 2063
INFO 2026-06-08 09:49:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,857
INFO 2026-06-08 09:49:43 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,379
INFO 2026-06-08 09:49:44 OpticalDuplicateFinder Large duplicate set. size = 1037
INFO 2026-06-08 09:49:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,246
INFO 2026-06-08 09:49:44 OpticalDuplicateFinder Large duplicate set. size = 1270
INFO 2026-06-08 09:49:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,729
INFO 2026-06-08 09:49:44 OpticalDuplicateFinder Large duplicate set. size = 1263
INFO 2026-06-08 09:49:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,342
INFO 2026-06-08 09:49:44 OpticalDuplicateFinder Large duplicate set. size = 1079
INFO 2026-06-08 09:49:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,889
INFO 2026-06-08 09:49:44 OpticalDuplicateFinder Large duplicate set. size = 1322
INFO 2026-06-08 09:49:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,049
INFO 2026-06-08 09:49:44 OpticalDuplicateFinder Large duplicate set. size = 1765
INFO 2026-06-08 09:49:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,396
INFO 2026-06-08 09:49:44 OpticalDuplicateFinder Large duplicate set. size = 1065
INFO 2026-06-08 09:49:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,134
INFO 2026-06-08 09:49:44 OpticalDuplicateFinder Large duplicate set. size = 1327
INFO 2026-06-08 09:49:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,326
INFO 2026-06-08 09:50:05 MarkDuplicates Traversing fragment information and detecting duplicates.
WARNING 2026-06-08 09:50:05 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 09:50:56 MarkDuplicates Sorting list of duplicate records.
INFO 2026-06-08 09:50:58 MarkDuplicates After generateDuplicateIndexes freeMemory: 203923520; totalMemory: 234881024; maxMemory: 127137742848
INFO 2026-06-08 09:50:58 MarkDuplicates Marking 314604059 records as duplicates.
INFO 2026-06-08 09:50:58 MarkDuplicates Found 16264109 optical duplicate clusters.
INFO 2026-06-08 09:50:58 MarkDuplicates Reads are assumed to be ordered by: coordinate
INFO 2026-06-08 09:51:15 MarkDuplicates Written 10,000,000 records. Elapsed time: 00:00:16s. Time for last 10,000,000: 16s. Last read position: chr1:21,824,720
INFO 2026-06-08 09:51:31 MarkDuplicates Written 20,000,000 records. Elapsed time: 00:00:32s. Time for last 10,000,000: 15s. Last read position: chr1:40,766,529
INFO 2026-06-08 09:51:47 MarkDuplicates Written 30,000,000 records. Elapsed time: 00:00:49s. Time for last 10,000,000: 16s. Last read position: chr1:108,796,341
INFO 2026-06-08 09:52:04 MarkDuplicates Written 40,000,000 records. Elapsed time: 00:01:05s. Time for last 10,000,000: 16s. Last read position: chr1:149,851,251
INFO 2026-06-08 09:52:20 MarkDuplicates Written 50,000,000 records. Elapsed time: 00:01:21s. Time for last 10,000,000: 16s. Last read position: chr1:156,671,278
INFO 2026-06-08 09:52:36 MarkDuplicates Written 60,000,000 records. Elapsed time: 00:01:37s. Time for last 10,000,000: 16s. Last read position: chr1:186,307,324
INFO 2026-06-08 09:52:52 MarkDuplicates Written 70,000,000 records. Elapsed time: 00:01:54s. Time for last 10,000,000: 16s. Last read position: chr1:231,421,095
INFO 2026-06-08 09:53:08 MarkDuplicates Written 80,000,000 records. Elapsed time: 00:02:10s. Time for last 10,000,000: 16s. Last read position: chr2:32,916,264
INFO 2026-06-08 09:53:24 MarkDuplicates Written 90,000,000 records. Elapsed time: 00:02:26s. Time for last 10,000,000: 15s. Last read position: chr2:87,818,559
INFO 2026-06-08 09:53:41 MarkDuplicates Written 100,000,000 records. Elapsed time: 00:02:42s. Time for last 10,000,000: 16s. Last read position: chr2:170,965,794
INFO 2026-06-08 09:53:57 MarkDuplicates Written 110,000,000 records. Elapsed time: 00:02:58s. Time for last 10,000,000: 15s. Last read position: chr2:210,002,694
INFO 2026-06-08 09:54:12 MarkDuplicates Written 120,000,000 records. Elapsed time: 00:03:14s. Time for last 10,000,000: 15s. Last read position: chr2:215,407,274
INFO 2026-06-08 09:54:28 MarkDuplicates Written 130,000,000 records. Elapsed time: 00:03:30s. Time for last 10,000,000: 16s. Last read position: chr2:235,652,120
INFO 2026-06-08 09:54:44 MarkDuplicates Written 140,000,000 records. Elapsed time: 00:03:46s. Time for last 10,000,000: 15s. Last read position: chr3:31,623,677
INFO 2026-06-08 09:55:01 MarkDuplicates Written 150,000,000 records. Elapsed time: 00:04:02s. Time for last 10,000,000: 16s. Last read position: chr3:78,635,773
INFO 2026-06-08 09:55:17 MarkDuplicates Written 160,000,000 records. Elapsed time: 00:04:18s. Time for last 10,000,000: 16s. Last read position: chr3:150,562,542
INFO 2026-06-08 09:55:33 MarkDuplicates Written 170,000,000 records. Elapsed time: 00:04:34s. Time for last 10,000,000: 16s. Last read position: chr4:48,849,855
INFO 2026-06-08 09:55:50 MarkDuplicates Written 180,000,000 records. Elapsed time: 00:04:51s. Time for last 10,000,000: 16s. Last read position: chr4:186,606,163
INFO 2026-06-08 09:56:06 MarkDuplicates Written 190,000,000 records. Elapsed time: 00:05:07s. Time for last 10,000,000: 16s. Last read position: chr5:83,490,163
INFO 2026-06-08 09:56:22 MarkDuplicates Written 200,000,000 records. Elapsed time: 00:05:23s. Time for last 10,000,000: 16s. Last read position: chr5:150,117,819
INFO 2026-06-08 09:56:38 MarkDuplicates Written 210,000,000 records. Elapsed time: 00:05:39s. Time for last 10,000,000: 16s. Last read position: chr5:179,824,229
INFO 2026-06-08 09:56:54 MarkDuplicates Written 220,000,000 records. Elapsed time: 00:05:55s. Time for last 10,000,000: 16s. Last read position: chr6:31,828,568
INFO 2026-06-08 09:57:10 MarkDuplicates Written 230,000,000 records. Elapsed time: 00:06:12s. Time for last 10,000,000: 16s. Last read position: chr6:82,214,424
INFO 2026-06-08 09:57:27 MarkDuplicates Written 240,000,000 records. Elapsed time: 00:06:28s. Time for last 10,000,000: 16s. Last read position: chr6:163,566,639
INFO 2026-06-08 09:57:43 MarkDuplicates Written 250,000,000 records. Elapsed time: 00:06:45s. Time for last 10,000,000: 16s. Last read position: chr7:39,696,823
INFO 2026-06-08 09:57:59 MarkDuplicates Written 260,000,000 records. Elapsed time: 00:07:01s. Time for last 10,000,000: 16s. Last read position: chr7:94,425,813
INFO 2026-06-08 09:58:16 MarkDuplicates Written 270,000,000 records. Elapsed time: 00:07:17s. Time for last 10,000,000: 16s. Last read position: chr7:143,356,840
INFO 2026-06-08 09:58:32 MarkDuplicates Written 280,000,000 records. Elapsed time: 00:07:33s. Time for last 10,000,000: 16s. Last read position: chr8:39,090,078
INFO 2026-06-08 09:58:49 MarkDuplicates Written 290,000,000 records. Elapsed time: 00:07:50s. Time for last 10,000,000: 16s. Last read position: chr8:143,804,757
INFO 2026-06-08 09:59:05 MarkDuplicates Written 300,000,000 records. Elapsed time: 00:08:07s. Time for last 10,000,000: 16s. Last read position: chr9:113,267,347
INFO 2026-06-08 09:59:22 MarkDuplicates Written 310,000,000 records. Elapsed time: 00:08:23s. Time for last 10,000,000: 16s. Last read position: chr10:5,748,828
INFO 2026-06-08 09:59:38 MarkDuplicates Written 320,000,000 records. Elapsed time: 00:08:39s. Time for last 10,000,000: 16s. Last read position: chr10:102,376,320
INFO 2026-06-08 09:59:54 MarkDuplicates Written 330,000,000 records. Elapsed time: 00:08:55s. Time for last 10,000,000: 15s. Last read position: chr11:12,259,874
INFO 2026-06-08 10:00:10 MarkDuplicates Written 340,000,000 records. Elapsed time: 00:09:12s. Time for last 10,000,000: 16s. Last read position: chr11:65,540,932
INFO 2026-06-08 10:00:27 MarkDuplicates Written 350,000,000 records. Elapsed time: 00:09:28s. Time for last 10,000,000: 16s. Last read position: chr11:108,161,226
INFO 2026-06-08 10:00:43 MarkDuplicates Written 360,000,000 records. Elapsed time: 00:09:45s. Time for last 10,000,000: 16s. Last read position: chr12:9,069,799
INFO 2026-06-08 10:00:59 MarkDuplicates Written 370,000,000 records. Elapsed time: 00:10:01s. Time for last 10,000,000: 15s. Last read position: chr12:52,057,182
INFO 2026-06-08 10:01:15 MarkDuplicates Written 380,000,000 records. Elapsed time: 00:10:17s. Time for last 10,000,000: 16s. Last read position: chr12:62,498,996
INFO 2026-06-08 10:01:32 MarkDuplicates Written 390,000,000 records. Elapsed time: 00:10:33s. Time for last 10,000,000: 16s. Last read position: chr12:116,006,322
INFO 2026-06-08 10:01:48 MarkDuplicates Written 400,000,000 records. Elapsed time: 00:10:49s. Time for last 10,000,000: 16s. Last read position: chr13:37,584,089
INFO 2026-06-08 10:02:04 MarkDuplicates Written 410,000,000 records. Elapsed time: 00:11:05s. Time for last 10,000,000: 16s. Last read position: chr14:20,801,577
INFO 2026-06-08 10:02:20 MarkDuplicates Written 420,000,000 records. Elapsed time: 00:11:21s. Time for last 10,000,000: 16s. Last read position: chr14:99,662,959
INFO 2026-06-08 10:02:37 MarkDuplicates Written 430,000,000 records. Elapsed time: 00:11:38s. Time for last 10,000,000: 16s. Last read position: chr15:60,354,183
INFO 2026-06-08 10:02:53 MarkDuplicates Written 440,000,000 records. Elapsed time: 00:11:54s. Time for last 10,000,000: 16s. Last read position: chr15:91,000,579
INFO 2026-06-08 10:03:09 MarkDuplicates Written 450,000,000 records. Elapsed time: 00:12:11s. Time for last 10,000,000: 16s. Last read position: chr16:18,347,607
INFO 2026-06-08 10:03:26 MarkDuplicates Written 460,000,000 records. Elapsed time: 00:12:27s. Time for last 10,000,000: 16s. Last read position: chr16:48,561,107
INFO 2026-06-08 10:03:43 MarkDuplicates Written 470,000,000 records. Elapsed time: 00:12:44s. Time for last 10,000,000: 16s. Last read position: chr17:1,675,726
INFO 2026-06-08 10:03:59 MarkDuplicates Written 480,000,000 records. Elapsed time: 00:13:00s. Time for last 10,000,000: 16s. Last read position: chr17:30,731,986
INFO 2026-06-08 10:04:15 MarkDuplicates Written 490,000,000 records. Elapsed time: 00:13:16s. Time for last 10,000,000: 16s. Last read position: chr17:49,044,073
INFO 2026-06-08 10:04:31 MarkDuplicates Written 500,000,000 records. Elapsed time: 00:13:33s. Time for last 10,000,000: 16s. Last read position: chr17:50,191,866
INFO 2026-06-08 10:04:48 MarkDuplicates Written 510,000,000 records. Elapsed time: 00:13:49s. Time for last 10,000,000: 16s. Last read position: chr17:50,199,294
INFO 2026-06-08 10:05:04 MarkDuplicates Written 520,000,000 records. Elapsed time: 00:14:05s. Time for last 10,000,000: 16s. Last read position: chr17:77,203,607
INFO 2026-06-08 10:05:20 MarkDuplicates Written 530,000,000 records. Elapsed time: 00:14:21s. Time for last 10,000,000: 16s. Last read position: chr18:62,280,293
INFO 2026-06-08 10:05:36 MarkDuplicates Written 540,000,000 records. Elapsed time: 00:14:38s. Time for last 10,000,000: 16s. Last read position: chr19:11,233,228
INFO 2026-06-08 10:05:53 MarkDuplicates Written 550,000,000 records. Elapsed time: 00:14:54s. Time for last 10,000,000: 16s. Last read position: chr19:34,377,843
INFO 2026-06-08 10:06:09 MarkDuplicates Written 560,000,000 records. Elapsed time: 00:15:10s. Time for last 10,000,000: 16s. Last read position: chr19:48,615,877
INFO 2026-06-08 10:06:25 MarkDuplicates Written 570,000,000 records. Elapsed time: 00:15:26s. Time for last 10,000,000: 16s. Last read position: chr20:18,548,760
INFO 2026-06-08 10:06:41 MarkDuplicates Written 580,000,000 records. Elapsed time: 00:15:42s. Time for last 10,000,000: 16s. Last read position: chr20:59,322,391
INFO 2026-06-08 10:06:57 MarkDuplicates Written 590,000,000 records. Elapsed time: 00:15:58s. Time for last 10,000,000: 15s. Last read position: chr21:46,003,928
INFO 2026-06-08 10:07:14 MarkDuplicates Written 600,000,000 records. Elapsed time: 00:16:15s. Time for last 10,000,000: 17s. Last read position: chr22:42,835,386
INFO 2026-06-08 10:07:30 MarkDuplicates Written 610,000,000 records. Elapsed time: 00:16:31s. Time for last 10,000,000: 16s. Last read position: chrX:53,558,731
INFO 2026-06-08 10:07:47 MarkDuplicates Written 620,000,000 records. Elapsed time: 00:16:49s. Time for last 10,000,000: 17s. Last read position: chrX:153,690,444
INFO 2026-06-08 10:08:02 MarkDuplicates Writing complete. Closing input iterator.
INFO 2026-06-08 10:08:02 MarkDuplicates Duplicate Index cleanup.
INFO 2026-06-08 10:08:02 MarkDuplicates Getting Memory Stats.
INFO 2026-06-08 10:08:02 MarkDuplicates Before output close freeMemory: 203871616; totalMemory: 234881024; maxMemory: 127137742848
INFO 2026-06-08 10:08:02 MarkDuplicates Closed outputs. Getting more Memory Stats.
INFO 2026-06-08 10:08:02 MarkDuplicates After output close freeMemory: 104128968; totalMemory: 134217728; maxMemory: 127137742848
[Mon Jun 08 10:08:02 GMT 2026] picard.sam.markduplicates.MarkDuplicates done. Elapsed time: 37.86 minutes.
Runtime.totalMemory()=134217728
ls: *cram: No such file or directory
ls: *.crai: No such file or directory