File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/09/9bef0f0528c82184faf6f023df05d8/.command.log
Size
7.3 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (659_bGW-T1-TRNA-1_A23MVY2LT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2e/1c741947d26ed25aa442fde2ecd262/659_bGW-T1-TRNA-1_A23MVY2LT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-bba2394f-ea06-4038-829e-f0bb41c45b0f/67/1d6e211d8f66f1c89f8ec9083ff96d/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/09/9bef0f0528c82184faf6f023df05d8/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/09/9bef0f0528c82184faf6f023df05d8/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/db/804b0879ccf83a4dce647b28863a20/659_bGW-T1-TRNA-1_A23MVY2LT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
==> STAGING COMPLETE (6 inputs)

Running application...
PTPRK--RSPO3
starfusion
arriba
DLG5--KCNMA1
starfusion
arriba
WDR19--ATP8A1
starfusion
arriba
RFC1--GPRC5A
starfusion
arriba
POLR2E--KEAP1
starfusion
arriba
DLG5--CTSLP1
starfusion
GPRC5A--RFC1
starfusion
arriba
TLK2P1--AC110079.1
starfusion
TLK2--AC240565.1
starfusion
NDUFA9--C12orf4
starfusion
arriba
DIP2B--PTRHD1
starfusion
arriba
SULT1B1--TBC1D1
arriba
SULT1B1--AC098680.2
arriba
PKP2--PKP2
arriba
PKP2--ASS1P14
arriba
TYK2--SBNO2
arriba
JMJD1C--LINC00841
arriba
JMJD1C--AL137026.2
arriba
MRPS6--RUNX1
arriba
SLC5A3--RUNX1
arriba
ANKRD24--KEAP1
arriba
TVP23C--CDRT4
arriba
PCDHA10--PCDHAC2
arriba
PCDHA10--PCDHAC1
arriba
PCDHA10--PCDHA13
arriba
CRYZL2P--SEC16B
arriba
STX18--STK32B
arriba
PCDHA4--PCDHAC2
arriba
PCDHA4--PCDHAC1
arriba
PCDHA4--PCDHA13
arriba
GTF2A1L--STON1-GTF2A1L
arriba
TLK2--FAM157A
arriba

  0%|          | 0/32 [00:00<?, ?it/s]
Processing PTPRK--RSPO3:   0%|          | 0/32 [00:00<?, ?it/s]
Processing PTPRK--RSPO3:   3%|▎         | 1/32 [00:00<00:03,  9.25it/s]
Processing DLG5--KCNMA1:   3%|▎         | 1/32 [00:00<00:03,  9.25it/s]
Processing DLG5--KCNMA1:   6%|▋         | 2/32 [00:00<00:03,  9.48it/s]
Processing WDR19--ATP8A1:   6%|▋         | 2/32 [00:00<00:03,  9.48it/s]
Processing WDR19--ATP8A1:   9%|▉         | 3/32 [00:00<00:03,  9.56it/s]
Processing RFC1--GPRC5A:   9%|▉         | 3/32 [00:00<00:03,  9.56it/s] 
Processing RFC1--GPRC5A:  12%|█▎        | 4/32 [00:00<00:02,  9.59it/s]
Processing POLR2E--KEAP1:  12%|█▎        | 4/32 [00:00<00:02,  9.59it/s]
Processing POLR2E--KEAP1:  16%|█▌        | 5/32 [00:00<00:02,  9.61it/s]
Processing DLG5--CTSLP1:  16%|█▌        | 5/32 [00:00<00:02,  9.61it/s] 
Processing DLG5--CTSLP1:  19%|█▉        | 6/32 [00:00<00:02,  9.63it/s]
Processing GPRC5A--RFC1:  19%|█▉        | 6/32 [00:00<00:02,  9.63it/s]
Processing GPRC5A--RFC1:  22%|██▏       | 7/32 [00:00<00:02,  9.64it/s]
Processing TLK2P1--AC110079.1:  22%|██▏       | 7/32 [00:00<00:02,  9.64it/s]
Processing TLK2P1--AC110079.1:  25%|██▌       | 8/32 [00:00<00:02,  9.64it/s]
Processing TLK2--AC240565.1:  25%|██▌       | 8/32 [00:00<00:02,  9.64it/s]  
Processing TLK2--AC240565.1:  28%|██▊       | 9/32 [00:00<00:02,  9.65it/s]
Processing NDUFA9--C12orf4:  28%|██▊       | 9/32 [00:00<00:02,  9.65it/s] 
Processing NDUFA9--C12orf4:  31%|███▏      | 10/32 [00:01<00:02,  9.65it/s]
Processing DIP2B--PTRHD1:  31%|███▏      | 10/32 [00:01<00:02,  9.65it/s]  
Processing DIP2B--PTRHD1:  34%|███▍      | 11/32 [00:01<00:02,  9.65it/s]
Processing SULT1B1--TBC1D1:  34%|███▍      | 11/32 [00:01<00:02,  9.65it/s]
Processing SULT1B1--TBC1D1:  38%|███▊      | 12/32 [00:01<00:02,  9.64it/s]
Processing SULT1B1--AC098680.2:  38%|███▊      | 12/32 [00:01<00:02,  9.64it/s]
Processing SULT1B1--AC098680.2:  41%|████      | 13/32 [00:01<00:01,  9.63it/s]
Processing PKP2--PKP2:  41%|████      | 13/32 [00:01<00:01,  9.63it/s]         
Processing PKP2--PKP2:  44%|████▍     | 14/32 [00:01<00:01,  9.62it/s]
Processing PKP2--ASS1P14:  44%|████▍     | 14/32 [00:01<00:01,  9.62it/s]
Processing PKP2--ASS1P14:  47%|████▋     | 15/32 [00:01<00:01,  9.63it/s]
Processing TYK2--SBNO2:  47%|████▋     | 15/32 [00:01<00:01,  9.63it/s]  
Processing TYK2--SBNO2:  50%|█████     | 16/32 [00:01<00:01,  9.63it/s]
Processing JMJD1C--LINC00841:  50%|█████     | 16/32 [00:01<00:01,  9.63it/s]
Processing JMJD1C--LINC00841:  53%|█████▎    | 17/32 [00:01<00:01,  9.64it/s]
Processing JMJD1C--AL137026.2:  53%|█████▎    | 17/32 [00:01<00:01,  9.64it/s]
Processing JMJD1C--AL137026.2:  56%|█████▋    | 18/32 [00:01<00:01,  9.64it/s]
Processing MRPS6--RUNX1:  56%|█████▋    | 18/32 [00:01<00:01,  9.64it/s]      
Processing MRPS6--RUNX1:  59%|█████▉    | 19/32 [00:01<00:01,  9.65it/s]
Processing SLC5A3--RUNX1:  59%|█████▉    | 19/32 [00:01<00:01,  9.65it/s]
Processing SLC5A3--RUNX1:  62%|██████▎   | 20/32 [00:02<00:01,  9.65it/s]
Processing ANKRD24--KEAP1:  62%|██████▎   | 20/32 [00:02<00:01,  9.65it/s]
Processing ANKRD24--KEAP1:  66%|██████▌   | 21/32 [00:02<00:01,  9.65it/s]
Processing TVP23C--CDRT4:  66%|██████▌   | 21/32 [00:02<00:01,  9.65it/s] 
Processing TVP23C--CDRT4:  69%|██████▉   | 22/32 [00:02<00:01,  9.65it/s]
Processing PCDHA10--PCDHAC2:  69%|██████▉   | 22/32 [00:02<00:01,  9.65it/s]
Processing PCDHA10--PCDHAC2:  72%|███████▏  | 23/32 [00:02<00:00,  9.65it/s]
Processing PCDHA10--PCDHAC1:  72%|███████▏  | 23/32 [00:02<00:00,  9.65it/s]
Processing PCDHA10--PCDHAC1:  75%|███████▌  | 24/32 [00:02<00:00,  9.65it/s]
Processing PCDHA10--PCDHA13:  75%|███████▌  | 24/32 [00:02<00:00,  9.65it/s]
Processing PCDHA10--PCDHA13:  78%|███████▊  | 25/32 [00:02<00:00,  9.65it/s]
Processing CRYZL2P--SEC16B:  78%|███████▊  | 25/32 [00:02<00:00,  9.65it/s] 
Processing CRYZL2P--SEC16B:  81%|████████▏ | 26/32 [00:02<00:00,  9.65it/s]
Processing STX18--STK32B:  81%|████████▏ | 26/32 [00:02<00:00,  9.65it/s]  
Processing STX18--STK32B:  84%|████████▍ | 27/32 [00:02<00:00,  9.65it/s]
Processing PCDHA4--PCDHAC2:  84%|████████▍ | 27/32 [00:02<00:00,  9.65it/s]
Processing PCDHA4--PCDHAC2:  88%|████████▊ | 28/32 [00:02<00:00,  9.65it/s]
Processing PCDHA4--PCDHAC1:  88%|████████▊ | 28/32 [00:02<00:00,  9.65it/s]
Processing PCDHA4--PCDHAC1:  91%|█████████ | 29/32 [00:03<00:00,  9.65it/s]
Processing PCDHA4--PCDHA13:  91%|█████████ | 29/32 [00:03<00:00,  9.65it/s]
Processing PCDHA4--PCDHA13:  94%|█████████▍| 30/32 [00:03<00:00,  9.65it/s]
Processing GTF2A1L--STON1-GTF2A1L:  94%|█████████▍| 30/32 [00:03<00:00,  9.65it/s]
Processing GTF2A1L--STON1-GTF2A1L:  97%|█████████▋| 31/32 [00:03<00:00,  9.65it/s]
Processing TLK2--FAM157A:  97%|█████████▋| 31/32 [00:03<00:00,  9.65it/s]         
Processing TLK2--FAM157A: 100%|██████████| 32/32 [00:03<00:00,  9.65it/s]
Processing TLK2--FAM157A: 100%|██████████| 32/32 [00:03<00:00,  9.63it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory