Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/20/d55399d5484ea1eee973582b45b935/659_bGW-T1-TRNA-1_A23MVY2LT4_2.star_alignment.Aligned.sortedByCoord.out.cram
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f0/fa34a25e04afa567906249120a4387/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f0/fa34a25e04afa567906249120a4387/.command.sh
==> STAGING COMPLETE (3 inputs)

ls: *.bai: No such file or directory
ls: *.csi: No such file or directory