[W::hts_idx_load3] The index file is older than the data file: 659_6i-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	204735617
Known Splicing Events:	202301901
Partial Novel Splicing Events:	1155143
Novel Splicing Events:	1164877
Filtered Splicing Events:	113696

Total splicing  Junctions:	353390
Known Splicing Junctions:	225124
Partial Novel Splicing Junctions:	68936
Novel Splicing Junctions:	59330

===================================================================
Create BED file ...
Create Interact file ...