Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1a/f73a0e22861201cc7c5cccf07ed1b4/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a5/e4364bf8afe2f6d38b7ef1b956dad3/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a3/87fb07343d841fd0f2a7f2e6a94df1/659_6i-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a5/e4364bf8afe2f6d38b7ef1b956dad3/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4f/d19f9fd6ef20d9d9eb9387299eaf0d/659_6i-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 204735617
[W::hts_idx_load3] The index file is older than the data file: 659_6i-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	204735617
Known Splicing Events:	202301901
Partial Novel Splicing Events:	1155143
Novel Splicing Events:	1164877
Filtered Splicing Events:	113696

Total splicing  Junctions:	353390
Known Splicing Junctions:	225124
Partial Novel Splicing Junctions:	68936
Novel Splicing Junctions:	59330

===================================================================
Create BED file ...
Create Interact file ...