[W::hts_idx_load3] The index file is older than the data file: 659_bNS-T1-TRNA-1_A23MVY2LT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	371735760
Known Splicing Events:	368233340
Partial Novel Splicing Events:	1877766
Novel Splicing Events:	1455114
Filtered Splicing Events:	169540

Total splicing  Junctions:	632398
Known Splicing Junctions:	283410
Partial Novel Splicing Junctions:	171235
Novel Splicing Junctions:	177753

===================================================================
Create BED file ...
Create Interact file ...