File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/84/ae3ea3d6d6bc5e74ee62f951bb88bd/.command.log
Size
1.4 KB
Task
NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:BAM_RSEQC:RSEQC_JUNCTIONANNOTATION (659_bNS-T1-TRNA-1_A23MVY2LT4_1)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e9/0af5486f4dc6f9e76f0f56b6af1e8f/659_bNS-T1-TRNA-1_A23MVY2LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c6/b331cf0e39548721fbddf3e59b88e6/659_bNS-T1-TRNA-1_A23MVY2LT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1a/f73a0e22861201cc7c5cccf07ed1b4/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/84/ae3ea3d6d6bc5e74ee62f951bb88bd/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/84/ae3ea3d6d6bc5e74ee62f951bb88bd/.command.run
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 371735760
[W::hts_idx_load3] The index file is older than the data file: 659_bNS-T1-TRNA-1_A23MVY2LT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	371735760
Known Splicing Events:	368233340
Partial Novel Splicing Events:	1877766
Novel Splicing Events:	1455114
Filtered Splicing Events:	169540

Total splicing  Junctions:	632398
Known Splicing Junctions:	283410
Partial Novel Splicing Junctions:	171235
Novel Splicing Junctions:	177753

===================================================================
Create BED file ...
Create Interact file ...