Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/48/9dece5d2c691c753d498b51c9ca630/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/48/9dece5d2c691c753d498b51c9ca630/.command.run
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa.fai
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/dc/92482f34132f19d9942348ae2e12ff/659_cAd-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)
Using GATK jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar
Running:
java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xmx121241M -XX:-UsePerfData -XX:ParallelGCThreads=2 -jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar MarkDuplicates --INPUT 659_cAd-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam --OUTPUT 659_cAd-T1-TRNA-1_A23MVY2LT4_2.md.bam --METRICS_FILE 659_cAd-T1-TRNA-1_A23MVY2LT4_2.md.bam.metrics --TMP_DIR . --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa -REMOVE_DUPLICATES false -VALIDATION_STRINGENCY LENIENT
09:27:54.788 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar!/com/intel/gkl/native/libgkl_compression.so
[Mon Jun 08 09:27:54 GMT 2026] MarkDuplicates --INPUT 659_cAd-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam --OUTPUT 659_cAd-T1-TRNA-1_A23MVY2LT4_2.md.bam --METRICS_FILE 659_cAd-T1-TRNA-1_A23MVY2LT4_2.md.bam.metrics --REMOVE_DUPLICATES false --TMP_DIR . --VALIDATION_STRINGENCY LENIENT --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --FLOW_MODE false --FLOW_QUALITY_SUM_STRATEGY false --USE_END_IN_UNPAIRED_READS false --USE_UNPAIRED_CLIPPED_END false --UNPAIRED_END_UNCERTAINTY 0 --FLOW_SKIP_FIRST_N_FLOWS 0 --FLOW_Q_IS_KNOWN_END false --FLOW_EFFECTIVE_QUALITY_THRESHOLD 15 --ADD_PG_TAG_TO_READS true --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX <optimized capture of last three ':' separated fields as numeric values> --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Mon Jun 08 09:27:54 GMT 2026] Executing as ?@nf-489dece5d2c691c753d498b51c9ca630-39630-wt55d on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 17.0.3-internal+0-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:4.4.0.0
INFO 2026-06-08 09:27:54 MarkDuplicates Start of doWork freeMemory: 105130440; totalMemory: 134217728; maxMemory: 127137742848
INFO 2026-06-08 09:27:54 MarkDuplicates Reading input file and constructing read end information.
INFO 2026-06-08 09:27:54 MarkDuplicates Will retain up to 460643995 data points before spilling to disk.
INFO 2026-06-08 09:28:00 MarkDuplicates Read 1,000,000 records. Elapsed time: 00:00:03s. Time for last 1,000,000: 3s. Last read position: chr1:1,085,913
INFO 2026-06-08 09:28:00 MarkDuplicates Tracking 3359 as yet unmatched pairs. 57 records in RAM.
INFO 2026-06-08 09:28:03 MarkDuplicates Read 2,000,000 records. Elapsed time: 00:00:05s. Time for last 1,000,000: 2s. Last read position: chr1:1,804,463
INFO 2026-06-08 09:28:03 MarkDuplicates Tracking 7330 as yet unmatched pairs. 861 records in RAM.
INFO 2026-06-08 09:28:06 MarkDuplicates Read 3,000,000 records. Elapsed time: 00:00:08s. Time for last 1,000,000: 2s. Last read position: chr1:6,785,513
INFO 2026-06-08 09:28:06 MarkDuplicates Tracking 10046 as yet unmatched pairs. 325 records in RAM.
INFO 2026-06-08 09:28:08 MarkDuplicates Read 4,000,000 records. Elapsed time: 00:00:10s. Time for last 1,000,000: 2s. Last read position: chr1:10,659,898
INFO 2026-06-08 09:28:08 MarkDuplicates Tracking 12753 as yet unmatched pairs. 120 records in RAM.
INFO 2026-06-08 09:28:10 MarkDuplicates Read 5,000,000 records. Elapsed time: 00:00:12s. Time for last 1,000,000: 2s. Last read position: chr1:15,717,972
INFO 2026-06-08 09:28:10 MarkDuplicates Tracking 15716 as yet unmatched pairs. 266 records in RAM.
INFO 2026-06-08 09:28:13 MarkDuplicates Read 6,000,000 records. Elapsed time: 00:00:15s. Time for last 1,000,000: 3s. Last read position: chr1:17,084,623
INFO 2026-06-08 09:28:13 MarkDuplicates Tracking 18303 as yet unmatched pairs. 65 records in RAM.
INFO 2026-06-08 09:28:16 MarkDuplicates Read 7,000,000 records. Elapsed time: 00:00:18s. Time for last 1,000,000: 2s. Last read position: chr1:20,604,995
INFO 2026-06-08 09:28:16 MarkDuplicates Tracking 21460 as yet unmatched pairs. 367 records in RAM.
INFO 2026-06-08 09:28:18 MarkDuplicates Read 8,000,000 records. Elapsed time: 00:00:20s. Time for last 1,000,000: 2s. Last read position: chr1:21,854,260
INFO 2026-06-08 09:28:18 MarkDuplicates Tracking 24488 as yet unmatched pairs. 450 records in RAM.
INFO 2026-06-08 09:28:20 MarkDuplicates Read 9,000,000 records. Elapsed time: 00:00:23s. Time for last 1,000,000: 2s. Last read position: chr1:23,093,857
INFO 2026-06-08 09:28:20 MarkDuplicates Tracking 27240 as yet unmatched pairs. 122 records in RAM.
INFO 2026-06-08 09:28:24 MarkDuplicates Read 10,000,000 records. Elapsed time: 00:00:26s. Time for last 1,000,000: 3s. Last read position: chr1:26,281,108
INFO 2026-06-08 09:28:24 MarkDuplicates Tracking 30902 as yet unmatched pairs. 1300 records in RAM.
INFO 2026-06-08 09:28:26 MarkDuplicates Read 11,000,000 records. Elapsed time: 00:00:28s. Time for last 1,000,000: 2s. Last read position: chr1:27,409,944
INFO 2026-06-08 09:28:26 MarkDuplicates Tracking 32958 as yet unmatched pairs. 611 records in RAM.
INFO 2026-06-08 09:28:28 MarkDuplicates Read 12,000,000 records. Elapsed time: 00:00:31s. Time for last 1,000,000: 2s. Last read position: chr1:31,429,495
INFO 2026-06-08 09:28:28 MarkDuplicates Tracking 36376 as yet unmatched pairs. 1220 records in RAM.
INFO 2026-06-08 09:28:31 MarkDuplicates Read 13,000,000 records. Elapsed time: 00:00:33s. Time for last 1,000,000: 2s. Last read position: chr1:32,770,639
INFO 2026-06-08 09:28:31 MarkDuplicates Tracking 38586 as yet unmatched pairs. 499 records in RAM.
INFO 2026-06-08 09:28:34 MarkDuplicates Read 14,000,000 records. Elapsed time: 00:00:36s. Time for last 1,000,000: 2s. Last read position: chr1:36,177,910
INFO 2026-06-08 09:28:34 MarkDuplicates Tracking 41246 as yet unmatched pairs. 361 records in RAM.
INFO 2026-06-08 09:28:37 MarkDuplicates Read 15,000,000 records. Elapsed time: 00:00:39s. Time for last 1,000,000: 2s. Last read position: chr1:39,422,425
INFO 2026-06-08 09:28:37 MarkDuplicates Tracking 44060 as yet unmatched pairs. 412 records in RAM.
INFO 2026-06-08 09:28:39 MarkDuplicates Read 16,000,000 records. Elapsed time: 00:00:41s. Time for last 1,000,000: 2s. Last read position: chr1:42,417,281
INFO 2026-06-08 09:28:39 MarkDuplicates Tracking 46291 as yet unmatched pairs. 40 records in RAM.
INFO 2026-06-08 09:28:41 MarkDuplicates Read 17,000,000 records. Elapsed time: 00:00:44s. Time for last 1,000,000: 2s. Last read position: chr1:43,590,990
INFO 2026-06-08 09:28:41 MarkDuplicates Tracking 49829 as yet unmatched pairs. 584 records in RAM.
INFO 2026-06-08 09:28:44 MarkDuplicates Read 18,000,000 records. Elapsed time: 00:00:46s. Time for last 1,000,000: 2s. Last read position: chr1:45,604,962
INFO 2026-06-08 09:28:44 MarkDuplicates Tracking 52131 as yet unmatched pairs. 128 records in RAM.
INFO 2026-06-08 09:28:46 MarkDuplicates Read 19,000,000 records. Elapsed time: 00:00:48s. Time for last 1,000,000: 2s. Last read position: chr1:51,840,345
INFO 2026-06-08 09:28:46 MarkDuplicates Tracking 54730 as yet unmatched pairs. 69 records in RAM.
INFO 2026-06-08 09:28:48 MarkDuplicates Read 20,000,000 records. Elapsed time: 00:00:51s. Time for last 1,000,000: 2s. Last read position: chr1:61,352,520
INFO 2026-06-08 09:28:48 MarkDuplicates Tracking 57713 as yet unmatched pairs. 239 records in RAM.
INFO 2026-06-08 09:28:51 MarkDuplicates Read 21,000,000 records. Elapsed time: 00:00:53s. Time for last 1,000,000: 2s. Last read position: chr1:77,963,602
INFO 2026-06-08 09:28:51 MarkDuplicates Tracking 60207 as yet unmatched pairs. 315 records in RAM.
INFO 2026-06-08 09:28:54 MarkDuplicates Read 22,000,000 records. Elapsed time: 00:00:56s. Time for last 1,000,000: 3s. Last read position: chr1:92,837,542
INFO 2026-06-08 09:28:54 MarkDuplicates Tracking 65059 as yet unmatched pairs. 2491 records in RAM.
INFO 2026-06-08 09:28:56 MarkDuplicates Read 23,000,000 records. Elapsed time: 00:00:58s. Time for last 1,000,000: 2s. Last read position: chr1:108,650,209
INFO 2026-06-08 09:28:56 MarkDuplicates Tracking 65004 as yet unmatched pairs. 50 records in RAM.
INFO 2026-06-08 09:28:58 MarkDuplicates Read 24,000,000 records. Elapsed time: 00:01:00s. Time for last 1,000,000: 1s. Last read position: chr1:112,667,125
INFO 2026-06-08 09:28:58 MarkDuplicates Tracking 69064 as yet unmatched pairs. 1308 records in RAM.
INFO 2026-06-08 09:29:00 MarkDuplicates Read 25,000,000 records. Elapsed time: 00:01:03s. Time for last 1,000,000: 2s. Last read position: chr1:114,736,816
INFO 2026-06-08 09:29:00 MarkDuplicates Tracking 71511 as yet unmatched pairs. 1132 records in RAM.
INFO 2026-06-08 09:29:02 MarkDuplicates Read 26,000,000 records. Elapsed time: 00:01:05s. Time for last 1,000,000: 1s. Last read position: chr1:119,923,929
INFO 2026-06-08 09:29:02 MarkDuplicates Tracking 73231 as yet unmatched pairs. 210 records in RAM.
INFO 2026-06-08 09:29:05 MarkDuplicates Read 27,000,000 records. Elapsed time: 00:01:07s. Time for last 1,000,000: 2s. Last read position: chr1:145,573,977
INFO 2026-06-08 09:29:05 MarkDuplicates Tracking 74873 as yet unmatched pairs. 38 records in RAM.
INFO 2026-06-08 09:29:07 MarkDuplicates Read 28,000,000 records. Elapsed time: 00:01:09s. Time for last 1,000,000: 2s. Last read position: chr1:148,549,615
INFO 2026-06-08 09:29:07 MarkDuplicates Tracking 76664 as yet unmatched pairs. 455 records in RAM.
INFO 2026-06-08 09:29:09 MarkDuplicates Read 29,000,000 records. Elapsed time: 00:01:11s. Time for last 1,000,000: 1s. Last read position: chr1:149,852,711
INFO 2026-06-08 09:29:09 MarkDuplicates Tracking 77981 as yet unmatched pairs. 206 records in RAM.
INFO 2026-06-08 09:29:11 MarkDuplicates Read 30,000,000 records. Elapsed time: 00:01:13s. Time for last 1,000,000: 1s. Last read position: chr1:150,578,856
INFO 2026-06-08 09:29:11 MarkDuplicates Tracking 81007 as yet unmatched pairs. 848 records in RAM.
INFO 2026-06-08 09:29:13 MarkDuplicates Read 31,000,000 records. Elapsed time: 00:01:15s. Time for last 1,000,000: 2s. Last read position: chr1:151,562,649
INFO 2026-06-08 09:29:13 MarkDuplicates Tracking 82988 as yet unmatched pairs. 167 records in RAM.
INFO 2026-06-08 09:29:15 MarkDuplicates Read 32,000,000 records. Elapsed time: 00:01:17s. Time for last 1,000,000: 2s. Last read position: chr1:153,772,966
INFO 2026-06-08 09:29:15 MarkDuplicates Tracking 85616 as yet unmatched pairs. 202 records in RAM.
INFO 2026-06-08 09:29:17 MarkDuplicates Read 33,000,000 records. Elapsed time: 00:01:19s. Time for last 1,000,000: 2s. Last read position: chr1:154,183,012
INFO 2026-06-08 09:29:17 MarkDuplicates Tracking 89384 as yet unmatched pairs. 1368 records in RAM.
INFO 2026-06-08 09:29:20 MarkDuplicates Read 34,000,000 records. Elapsed time: 00:01:22s. Time for last 1,000,000: 2s. Last read position: chr1:155,060,761
INFO 2026-06-08 09:29:20 MarkDuplicates Tracking 91809 as yet unmatched pairs. 1257 records in RAM.
INFO 2026-06-08 09:29:22 MarkDuplicates Read 35,000,000 records. Elapsed time: 00:01:25s. Time for last 1,000,000: 2s. Last read position: chr1:155,676,731
INFO 2026-06-08 09:29:22 MarkDuplicates Tracking 93663 as yet unmatched pairs. 719 records in RAM.
INFO 2026-06-08 09:29:25 MarkDuplicates Read 36,000,000 records. Elapsed time: 00:01:27s. Time for last 1,000,000: 2s. Last read position: chr1:156,135,272
INFO 2026-06-08 09:29:25 MarkDuplicates Tracking 98732 as yet unmatched pairs. 2521 records in RAM.
INFO 2026-06-08 09:29:27 MarkDuplicates Read 37,000,000 records. Elapsed time: 00:01:29s. Time for last 1,000,000: 2s. Last read position: chr1:156,562,613
INFO 2026-06-08 09:29:27 MarkDuplicates Tracking 99497 as yet unmatched pairs. 104 records in RAM.
INFO 2026-06-08 09:29:29 MarkDuplicates Read 38,000,000 records. Elapsed time: 00:01:31s. Time for last 1,000,000: 1s. Last read position: chr1:160,317,608
INFO 2026-06-08 09:29:29 MarkDuplicates Tracking 102401 as yet unmatched pairs. 317 records in RAM.
INFO 2026-06-08 09:29:31 MarkDuplicates Read 39,000,000 records. Elapsed time: 00:01:33s. Time for last 1,000,000: 2s. Last read position: chr1:161,670,263
INFO 2026-06-08 09:29:31 MarkDuplicates Tracking 105075 as yet unmatched pairs. 527 records in RAM.
INFO 2026-06-08 09:29:33 MarkDuplicates Read 40,000,000 records. Elapsed time: 00:01:35s. Time for last 1,000,000: 2s. Last read position: chr1:169,530,820
INFO 2026-06-08 09:29:33 MarkDuplicates Tracking 107337 as yet unmatched pairs. 135 records in RAM.
INFO 2026-06-08 09:29:35 MarkDuplicates Read 41,000,000 records. Elapsed time: 00:01:37s. Time for last 1,000,000: 2s. Last read position: chr1:175,160,193
INFO 2026-06-08 09:29:35 MarkDuplicates Tracking 110151 as yet unmatched pairs. 552 records in RAM.
INFO 2026-06-08 09:29:37 MarkDuplicates Read 42,000,000 records. Elapsed time: 00:01:39s. Time for last 1,000,000: 2s. Last read position: chr1:182,388,594
INFO 2026-06-08 09:29:37 MarkDuplicates Tracking 112991 as yet unmatched pairs. 468 records in RAM.
INFO 2026-06-08 09:29:39 MarkDuplicates Read 43,000,000 records. Elapsed time: 00:01:41s. Time for last 1,000,000: 1s. Last read position: chr1:185,156,514
INFO 2026-06-08 09:29:39 MarkDuplicates Tracking 115433 as yet unmatched pairs. 214 records in RAM.
INFO 2026-06-08 09:29:41 MarkDuplicates Read 44,000,000 records. Elapsed time: 00:01:44s. Time for last 1,000,000: 2s. Last read position: chr1:200,409,165
INFO 2026-06-08 09:29:41 MarkDuplicates Tracking 117759 as yet unmatched pairs. 167 records in RAM.
INFO 2026-06-08 09:29:43 MarkDuplicates Read 45,000,000 records. Elapsed time: 00:01:46s. Time for last 1,000,000: 2s. Last read position: chr1:202,012,352
INFO 2026-06-08 09:29:43 MarkDuplicates Tracking 121157 as yet unmatched pairs. 695 records in RAM.
INFO 2026-06-08 09:29:46 MarkDuplicates Read 46,000,000 records. Elapsed time: 00:01:48s. Time for last 1,000,000: 2s. Last read position: chr1:204,257,390
INFO 2026-06-08 09:29:46 MarkDuplicates Tracking 123433 as yet unmatched pairs. 556 records in RAM.
INFO 2026-06-08 09:29:49 MarkDuplicates Read 47,000,000 records. Elapsed time: 00:01:51s. Time for last 1,000,000: 2s. Last read position: chr1:206,730,049
INFO 2026-06-08 09:29:49 MarkDuplicates Tracking 126316 as yet unmatched pairs. 848 records in RAM.
INFO 2026-06-08 09:29:51 MarkDuplicates Read 48,000,000 records. Elapsed time: 00:01:53s. Time for last 1,000,000: 2s. Last read position: chr1:209,623,858
INFO 2026-06-08 09:29:51 MarkDuplicates Tracking 129701 as yet unmatched pairs. 1305 records in RAM.
INFO 2026-06-08 09:29:53 MarkDuplicates Read 49,000,000 records. Elapsed time: 00:01:55s. Time for last 1,000,000: 2s. Last read position: chr1:219,984,205
INFO 2026-06-08 09:29:53 MarkDuplicates Tracking 131155 as yet unmatched pairs. 116 records in RAM.
INFO 2026-06-08 09:29:55 MarkDuplicates Read 50,000,000 records. Elapsed time: 00:01:57s. Time for last 1,000,000: 2s. Last read position: chr1:224,433,930
INFO 2026-06-08 09:29:55 MarkDuplicates Tracking 134315 as yet unmatched pairs. 600 records in RAM.
INFO 2026-06-08 09:29:57 MarkDuplicates Read 51,000,000 records. Elapsed time: 00:01:59s. Time for last 1,000,000: 1s. Last read position: chr1:228,141,225
INFO 2026-06-08 09:29:57 MarkDuplicates Tracking 137995 as yet unmatched pairs. 1679 records in RAM.
INFO 2026-06-08 09:29:59 MarkDuplicates Read 52,000,000 records. Elapsed time: 00:02:01s. Time for last 1,000,000: 2s. Last read position: chr1:234,427,590
INFO 2026-06-08 09:29:59 MarkDuplicates Tracking 139845 as yet unmatched pairs. 398 records in RAM.
INFO 2026-06-08 09:30:01 MarkDuplicates Read 53,000,000 records. Elapsed time: 00:02:03s. Time for last 1,000,000: 2s. Last read position: chr1:243,573,004
INFO 2026-06-08 09:30:01 MarkDuplicates Tracking 142909 as yet unmatched pairs. 454 records in RAM.
INFO 2026-06-08 09:30:05 MarkDuplicates Read 54,000,000 records. Elapsed time: 00:02:07s. Time for last 1,000,000: 3s. Last read position: chr2:3,575,590
INFO 2026-06-08 09:30:05 MarkDuplicates Tracking 146807 as yet unmatched pairs. 146268 records in RAM.
INFO 2026-06-08 09:30:07 MarkDuplicates Read 55,000,000 records. Elapsed time: 00:02:10s. Time for last 1,000,000: 2s. Last read position: chr2:11,344,033
INFO 2026-06-08 09:30:07 MarkDuplicates Tracking 149081 as yet unmatched pairs. 148530 records in RAM.
INFO 2026-06-08 09:30:10 MarkDuplicates Read 56,000,000 records. Elapsed time: 00:02:12s. Time for last 1,000,000: 2s. Last read position: chr2:24,257,997
INFO 2026-06-08 09:30:10 MarkDuplicates Tracking 150847 as yet unmatched pairs. 150281 records in RAM.
INFO 2026-06-08 09:30:12 MarkDuplicates Read 57,000,000 records. Elapsed time: 00:02:14s. Time for last 1,000,000: 2s. Last read position: chr2:27,236,288
INFO 2026-06-08 09:30:12 MarkDuplicates Tracking 153657 as yet unmatched pairs. 153085 records in RAM.
INFO 2026-06-08 09:30:15 MarkDuplicates Read 58,000,000 records. Elapsed time: 00:02:17s. Time for last 1,000,000: 2s. Last read position: chr2:32,087,519
INFO 2026-06-08 09:30:15 MarkDuplicates Tracking 156329 as yet unmatched pairs. 155730 records in RAM.
INFO 2026-06-08 09:30:17 MarkDuplicates Read 59,000,000 records. Elapsed time: 00:02:20s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,260
INFO 2026-06-08 09:30:17 MarkDuplicates Tracking 232457 as yet unmatched pairs. 154375 records in RAM.
INFO 2026-06-08 09:30:20 MarkDuplicates Read 60,000,000 records. Elapsed time: 00:02:22s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,264
INFO 2026-06-08 09:30:20 MarkDuplicates Tracking 755976 as yet unmatched pairs. 138209 records in RAM.
INFO 2026-06-08 09:30:24 MarkDuplicates Read 61,000,000 records. Elapsed time: 00:02:26s. Time for last 1,000,000: 3s. Last read position: chr2:32,916,366
INFO 2026-06-08 09:30:24 MarkDuplicates Tracking 1368256 as yet unmatched pairs. 118567 records in RAM.
INFO 2026-06-08 09:30:25 MarkDuplicates Read 62,000,000 records. Elapsed time: 00:02:28s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,406
INFO 2026-06-08 09:30:25 MarkDuplicates Tracking 1449401 as yet unmatched pairs. 115941 records in RAM.
INFO 2026-06-08 09:30:27 MarkDuplicates Read 63,000,000 records. Elapsed time: 00:02:29s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,431
INFO 2026-06-08 09:30:27 MarkDuplicates Tracking 1528633 as yet unmatched pairs. 113567 records in RAM.
INFO 2026-06-08 09:30:29 MarkDuplicates Read 64,000,000 records. Elapsed time: 00:02:31s. Time for last 1,000,000: 2s. Last read position: chr2:40,353,940
INFO 2026-06-08 09:30:29 MarkDuplicates Tracking 1536310 as yet unmatched pairs. 110854 records in RAM.
INFO 2026-06-08 09:30:31 MarkDuplicates Read 65,000,000 records. Elapsed time: 00:02:33s. Time for last 1,000,000: 2s. Last read position: chr2:43,945,381
INFO 2026-06-08 09:30:31 MarkDuplicates Tracking 1533825 as yet unmatched pairs. 108362 records in RAM.
INFO 2026-06-08 09:30:33 MarkDuplicates Read 66,000,000 records. Elapsed time: 00:02:36s. Time for last 1,000,000: 2s. Last read position: chr2:53,809,264
INFO 2026-06-08 09:30:33 MarkDuplicates Tracking 1530975 as yet unmatched pairs. 105498 records in RAM.
INFO 2026-06-08 09:30:36 MarkDuplicates Read 67,000,000 records. Elapsed time: 00:02:38s. Time for last 1,000,000: 2s. Last read position: chr2:55,049,880
INFO 2026-06-08 09:30:36 MarkDuplicates Tracking 1530638 as yet unmatched pairs. 105159 records in RAM.
INFO 2026-06-08 09:30:38 MarkDuplicates Read 68,000,000 records. Elapsed time: 00:02:40s. Time for last 1,000,000: 2s. Last read position: chr2:61,872,116
INFO 2026-06-08 09:30:38 MarkDuplicates Tracking 1525849 as yet unmatched pairs. 100361 records in RAM.
INFO 2026-06-08 09:30:40 MarkDuplicates Read 69,000,000 records. Elapsed time: 00:02:43s. Time for last 1,000,000: 2s. Last read position: chr2:69,370,024
INFO 2026-06-08 09:30:40 MarkDuplicates Tracking 1523905 as yet unmatched pairs. 98404 records in RAM.
INFO 2026-06-08 09:30:43 MarkDuplicates Read 70,000,000 records. Elapsed time: 00:02:45s. Time for last 1,000,000: 2s. Last read position: chr2:73,830,959
INFO 2026-06-08 09:30:43 MarkDuplicates Tracking 1520535 as yet unmatched pairs. 95020 records in RAM.
INFO 2026-06-08 09:30:44 MarkDuplicates Read 71,000,000 records. Elapsed time: 00:02:47s. Time for last 1,000,000: 1s. Last read position: chr2:74,958,710
INFO 2026-06-08 09:30:44 MarkDuplicates Tracking 1517680 as yet unmatched pairs. 92164 records in RAM.
INFO 2026-06-08 09:30:46 MarkDuplicates Read 72,000,000 records. Elapsed time: 00:02:49s. Time for last 1,000,000: 1s. Last read position: chr2:86,478,634
INFO 2026-06-08 09:30:46 MarkDuplicates Tracking 1515144 as yet unmatched pairs. 89620 records in RAM.
INFO 2026-06-08 09:30:49 MarkDuplicates Read 73,000,000 records. Elapsed time: 00:02:51s. Time for last 1,000,000: 2s. Last read position: chr2:96,290,426
INFO 2026-06-08 09:30:49 MarkDuplicates Tracking 1513130 as yet unmatched pairs. 87597 records in RAM.
INFO 2026-06-08 09:30:51 MarkDuplicates Read 74,000,000 records. Elapsed time: 00:02:53s. Time for last 1,000,000: 2s. Last read position: chr2:101,004,252
INFO 2026-06-08 09:30:51 MarkDuplicates Tracking 1517609 as yet unmatched pairs. 92066 records in RAM.
INFO 2026-06-08 09:30:53 MarkDuplicates Read 75,000,000 records. Elapsed time: 00:02:55s. Time for last 1,000,000: 2s. Last read position: chr2:108,470,823
INFO 2026-06-08 09:30:53 MarkDuplicates Tracking 1508082 as yet unmatched pairs. 82534 records in RAM.
INFO 2026-06-08 09:30:55 MarkDuplicates Read 76,000,000 records. Elapsed time: 00:02:57s. Time for last 1,000,000: 1s. Last read position: chr2:109,585,071
INFO 2026-06-08 09:30:55 MarkDuplicates Tracking 1505964 as yet unmatched pairs. 80389 records in RAM.
INFO 2026-06-08 09:30:57 MarkDuplicates Read 77,000,000 records. Elapsed time: 00:03:00s. Time for last 1,000,000: 2s. Last read position: chr2:112,380,835
INFO 2026-06-08 09:30:57 MarkDuplicates Tracking 1503980 as yet unmatched pairs. 78405 records in RAM.
INFO 2026-06-08 09:31:00 MarkDuplicates Read 78,000,000 records. Elapsed time: 00:03:02s. Time for last 1,000,000: 2s. Last read position: chr2:117,829,405
INFO 2026-06-08 09:31:00 MarkDuplicates Tracking 1502129 as yet unmatched pairs. 76552 records in RAM.
INFO 2026-06-08 09:31:02 MarkDuplicates Read 79,000,000 records. Elapsed time: 00:03:04s. Time for last 1,000,000: 1s. Last read position: chr2:130,182,600
INFO 2026-06-08 09:31:02 MarkDuplicates Tracking 1499726 as yet unmatched pairs. 74119 records in RAM.
INFO 2026-06-08 09:31:04 MarkDuplicates Read 80,000,000 records. Elapsed time: 00:03:06s. Time for last 1,000,000: 2s. Last read position: chr2:151,278,832
INFO 2026-06-08 09:31:04 MarkDuplicates Tracking 1496508 as yet unmatched pairs. 70895 records in RAM.
INFO 2026-06-08 09:31:06 MarkDuplicates Read 81,000,000 records. Elapsed time: 00:03:08s. Time for last 1,000,000: 2s. Last read position: chr2:159,754,107
INFO 2026-06-08 09:31:06 MarkDuplicates Tracking 1494169 as yet unmatched pairs. 68547 records in RAM.
INFO 2026-06-08 09:31:08 MarkDuplicates Read 82,000,000 records. Elapsed time: 00:03:11s. Time for last 1,000,000: 2s. Last read position: chr2:171,517,393
INFO 2026-06-08 09:31:08 MarkDuplicates Tracking 1491706 as yet unmatched pairs. 66078 records in RAM.
INFO 2026-06-08 09:31:10 MarkDuplicates Read 83,000,000 records. Elapsed time: 00:03:13s. Time for last 1,000,000: 1s. Last read position: chr2:177,231,906
INFO 2026-06-08 09:31:10 MarkDuplicates Tracking 1489485 as yet unmatched pairs. 63842 records in RAM.
INFO 2026-06-08 09:31:13 MarkDuplicates Read 84,000,000 records. Elapsed time: 00:03:15s. Time for last 1,000,000: 2s. Last read position: chr2:186,590,343
INFO 2026-06-08 09:31:13 MarkDuplicates Tracking 1486923 as yet unmatched pairs. 61276 records in RAM.
INFO 2026-06-08 09:31:15 MarkDuplicates Read 85,000,000 records. Elapsed time: 00:03:17s. Time for last 1,000,000: 2s. Last read position: chr2:189,004,293
INFO 2026-06-08 09:31:15 MarkDuplicates Tracking 1484834 as yet unmatched pairs. 59187 records in RAM.
INFO 2026-06-08 09:31:17 MarkDuplicates Read 86,000,000 records. Elapsed time: 00:03:19s. Time for last 1,000,000: 2s. Last read position: chr2:190,921,043
INFO 2026-06-08 09:31:17 MarkDuplicates Tracking 1480857 as yet unmatched pairs. 55205 records in RAM.
INFO 2026-06-08 09:31:19 MarkDuplicates Read 87,000,000 records. Elapsed time: 00:03:21s. Time for last 1,000,000: 2s. Last read position: chr2:200,572,694
INFO 2026-06-08 09:31:19 MarkDuplicates Tracking 1477973 as yet unmatched pairs. 52311 records in RAM.
INFO 2026-06-08 09:31:21 MarkDuplicates Read 88,000,000 records. Elapsed time: 00:03:24s. Time for last 1,000,000: 2s. Last read position: chr2:206,056,882
INFO 2026-06-08 09:31:21 MarkDuplicates Tracking 1475603 as yet unmatched pairs. 49932 records in RAM.
INFO 2026-06-08 09:31:24 MarkDuplicates Read 89,000,000 records. Elapsed time: 00:03:26s. Time for last 1,000,000: 2s. Last read position: chr2:215,361,979
INFO 2026-06-08 09:31:24 MarkDuplicates Tracking 1487084 as yet unmatched pairs. 61410 records in RAM.
INFO 2026-06-08 09:31:26 MarkDuplicates Read 90,000,000 records. Elapsed time: 00:03:29s. Time for last 1,000,000: 2s. Last read position: chr2:215,370,398
INFO 2026-06-08 09:31:26 MarkDuplicates Tracking 1494354 as yet unmatched pairs. 68675 records in RAM.
INFO 2026-06-08 09:31:29 MarkDuplicates Read 91,000,000 records. Elapsed time: 00:03:31s. Time for last 1,000,000: 2s. Last read position: chr2:215,373,371
INFO 2026-06-08 09:31:29 MarkDuplicates Tracking 1482301 as yet unmatched pairs. 56622 records in RAM.
INFO 2026-06-08 09:31:31 MarkDuplicates Read 92,000,000 records. Elapsed time: 00:03:33s. Time for last 1,000,000: 2s. Last read position: chr2:215,378,175
INFO 2026-06-08 09:31:31 MarkDuplicates Tracking 1475744 as yet unmatched pairs. 50064 records in RAM.
INFO 2026-06-08 09:31:33 MarkDuplicates Read 93,000,000 records. Elapsed time: 00:03:35s. Time for last 1,000,000: 2s. Last read position: chr2:215,384,020
INFO 2026-06-08 09:31:33 MarkDuplicates Tracking 1468406 as yet unmatched pairs. 42720 records in RAM.
INFO 2026-06-08 09:31:35 MarkDuplicates Read 94,000,000 records. Elapsed time: 00:03:37s. Time for last 1,000,000: 1s. Last read position: chr2:215,393,134
INFO 2026-06-08 09:31:35 MarkDuplicates Tracking 1470757 as yet unmatched pairs. 45071 records in RAM.
INFO 2026-06-08 09:31:37 MarkDuplicates Read 95,000,000 records. Elapsed time: 00:03:40s. Time for last 1,000,000: 2s. Last read position: chr2:215,406,238
INFO 2026-06-08 09:31:37 MarkDuplicates Tracking 1466368 as yet unmatched pairs. 40672 records in RAM.
INFO 2026-06-08 09:31:40 MarkDuplicates Read 96,000,000 records. Elapsed time: 00:03:42s. Time for last 1,000,000: 2s. Last read position: chr2:215,409,585
INFO 2026-06-08 09:31:40 MarkDuplicates Tracking 1473769 as yet unmatched pairs. 48055 records in RAM.
INFO 2026-06-08 09:31:42 MarkDuplicates Read 97,000,000 records. Elapsed time: 00:03:45s. Time for last 1,000,000: 2s. Last read position: chr2:215,422,124
INFO 2026-06-08 09:31:42 MarkDuplicates Tracking 1457709 as yet unmatched pairs. 31991 records in RAM.
INFO 2026-06-08 09:31:45 MarkDuplicates Read 98,000,000 records. Elapsed time: 00:03:47s. Time for last 1,000,000: 2s. Last read position: chr2:215,428,313
INFO 2026-06-08 09:31:45 MarkDuplicates Tracking 1462623 as yet unmatched pairs. 36901 records in RAM.
INFO 2026-06-08 09:31:47 MarkDuplicates Read 99,000,000 records. Elapsed time: 00:03:49s. Time for last 1,000,000: 2s. Last read position: chr2:216,065,359
INFO 2026-06-08 09:31:47 MarkDuplicates Tracking 1447835 as yet unmatched pairs. 22100 records in RAM.
INFO 2026-06-08 09:31:49 MarkDuplicates Read 100,000,000 records. Elapsed time: 00:03:52s. Time for last 1,000,000: 2s. Last read position: chr2:218,264,409
INFO 2026-06-08 09:31:49 MarkDuplicates Tracking 1445324 as yet unmatched pairs. 19582 records in RAM.
INFO 2026-06-08 09:31:52 MarkDuplicates Read 101,000,000 records. Elapsed time: 00:03:54s. Time for last 1,000,000: 2s. Last read position: chr2:219,250,363
INFO 2026-06-08 09:31:52 MarkDuplicates Tracking 1442452 as yet unmatched pairs. 16693 records in RAM.
INFO 2026-06-08 09:31:54 MarkDuplicates Read 102,000,000 records. Elapsed time: 00:03:57s. Time for last 1,000,000: 2s. Last read position: chr2:222,933,260
INFO 2026-06-08 09:31:54 MarkDuplicates Tracking 1438847 as yet unmatched pairs. 13078 records in RAM.
INFO 2026-06-08 09:31:56 MarkDuplicates Read 103,000,000 records. Elapsed time: 00:03:59s. Time for last 1,000,000: 2s. Last read position: chr2:231,195,843
INFO 2026-06-08 09:31:56 MarkDuplicates Tracking 1436028 as yet unmatched pairs. 10247 records in RAM.
INFO 2026-06-08 09:31:59 MarkDuplicates Read 104,000,000 records. Elapsed time: 00:04:01s. Time for last 1,000,000: 2s. Last read position: chr2:235,670,334
INFO 2026-06-08 09:31:59 MarkDuplicates Tracking 1433869 as yet unmatched pairs. 8086 records in RAM.
INFO 2026-06-08 09:32:01 MarkDuplicates Read 105,000,000 records. Elapsed time: 00:04:04s. Time for last 1,000,000: 2s. Last read position: chr2:237,762,892
INFO 2026-06-08 09:32:01 MarkDuplicates Tracking 1432168 as yet unmatched pairs. 6378 records in RAM.
INFO 2026-06-08 09:32:04 MarkDuplicates Read 106,000,000 records. Elapsed time: 00:04:06s. Time for last 1,000,000: 2s. Last read position: chr2:241,236,631
INFO 2026-06-08 09:32:04 MarkDuplicates Tracking 1427778 as yet unmatched pairs. 1978 records in RAM.
INFO 2026-06-08 09:32:07 MarkDuplicates Read 107,000,000 records. Elapsed time: 00:04:09s. Time for last 1,000,000: 3s. Last read position: chr3:9,475,056
INFO 2026-06-08 09:32:07 MarkDuplicates Tracking 1424560 as yet unmatched pairs. 87900 records in RAM.
INFO 2026-06-08 09:32:10 MarkDuplicates Read 108,000,000 records. Elapsed time: 00:04:12s. Time for last 1,000,000: 2s. Last read position: chr3:12,606,260
INFO 2026-06-08 09:32:10 MarkDuplicates Tracking 1423027 as yet unmatched pairs. 86364 records in RAM.
INFO 2026-06-08 09:32:12 MarkDuplicates Read 109,000,000 records. Elapsed time: 00:04:14s. Time for last 1,000,000: 2s. Last read position: chr3:23,887,574
INFO 2026-06-08 09:32:12 MarkDuplicates Tracking 1419370 as yet unmatched pairs. 82700 records in RAM.
INFO 2026-06-08 09:32:14 MarkDuplicates Read 110,000,000 records. Elapsed time: 00:04:17s. Time for last 1,000,000: 2s. Last read position: chr3:33,866,450
INFO 2026-06-08 09:32:14 MarkDuplicates Tracking 1416587 as yet unmatched pairs. 79911 records in RAM.
INFO 2026-06-08 09:32:18 MarkDuplicates Read 111,000,000 records. Elapsed time: 00:04:20s. Time for last 1,000,000: 3s. Last read position: chr3:39,411,688
INFO 2026-06-08 09:32:18 MarkDuplicates Tracking 1418103 as yet unmatched pairs. 81406 records in RAM.
INFO 2026-06-08 09:32:20 MarkDuplicates Read 112,000,000 records. Elapsed time: 00:04:22s. Time for last 1,000,000: 2s. Last read position: chr3:43,081,011
INFO 2026-06-08 09:32:20 MarkDuplicates Tracking 1411257 as yet unmatched pairs. 74556 records in RAM.
INFO 2026-06-08 09:32:22 MarkDuplicates Read 113,000,000 records. Elapsed time: 00:04:25s. Time for last 1,000,000: 2s. Last read position: chr3:46,995,066
INFO 2026-06-08 09:32:22 MarkDuplicates Tracking 1409368 as yet unmatched pairs. 72659 records in RAM.
INFO 2026-06-08 09:32:25 MarkDuplicates Read 114,000,000 records. Elapsed time: 00:04:27s. Time for last 1,000,000: 2s. Last read position: chr3:47,662,418
INFO 2026-06-08 09:32:25 MarkDuplicates Tracking 1405541 as yet unmatched pairs. 68825 records in RAM.
INFO 2026-06-08 09:32:27 MarkDuplicates Read 115,000,000 records. Elapsed time: 00:04:29s. Time for last 1,000,000: 2s. Last read position: chr3:48,571,246
INFO 2026-06-08 09:32:27 MarkDuplicates Tracking 1402665 as yet unmatched pairs. 65947 records in RAM.
INFO 2026-06-08 09:32:30 MarkDuplicates Read 116,000,000 records. Elapsed time: 00:04:32s. Time for last 1,000,000: 2s. Last read position: chr3:49,121,536
INFO 2026-06-08 09:32:30 MarkDuplicates Tracking 1399369 as yet unmatched pairs. 62644 records in RAM.
INFO 2026-06-08 09:32:32 MarkDuplicates Read 117,000,000 records. Elapsed time: 00:04:34s. Time for last 1,000,000: 2s. Last read position: chr3:49,890,571
INFO 2026-06-08 09:32:32 MarkDuplicates Tracking 1397218 as yet unmatched pairs. 60485 records in RAM.
INFO 2026-06-08 09:32:34 MarkDuplicates Read 118,000,000 records. Elapsed time: 00:04:37s. Time for last 1,000,000: 2s. Last read position: chr3:50,617,691
INFO 2026-06-08 09:32:34 MarkDuplicates Tracking 1393464 as yet unmatched pairs. 56727 records in RAM.
INFO 2026-06-08 09:32:37 MarkDuplicates Read 119,000,000 records. Elapsed time: 00:04:39s. Time for last 1,000,000: 2s. Last read position: chr3:52,480,207
INFO 2026-06-08 09:32:37 MarkDuplicates Tracking 1391022 as yet unmatched pairs. 54281 records in RAM.
INFO 2026-06-08 09:32:39 MarkDuplicates Read 120,000,000 records. Elapsed time: 00:04:41s. Time for last 1,000,000: 2s. Last read position: chr3:56,882,297
INFO 2026-06-08 09:32:39 MarkDuplicates Tracking 1388023 as yet unmatched pairs. 51267 records in RAM.
INFO 2026-06-08 09:32:41 MarkDuplicates Read 121,000,000 records. Elapsed time: 00:04:44s. Time for last 1,000,000: 2s. Last read position: chr3:58,123,176
INFO 2026-06-08 09:32:41 MarkDuplicates Tracking 1389024 as yet unmatched pairs. 52262 records in RAM.
INFO 2026-06-08 09:32:43 MarkDuplicates Read 122,000,000 records. Elapsed time: 00:04:46s. Time for last 1,000,000: 1s. Last read position: chr3:63,835,178
INFO 2026-06-08 09:32:43 MarkDuplicates Tracking 1383262 as yet unmatched pairs. 46492 records in RAM.
INFO 2026-06-08 09:32:46 MarkDuplicates Read 123,000,000 records. Elapsed time: 00:04:48s. Time for last 1,000,000: 2s. Last read position: chr3:97,967,255
INFO 2026-06-08 09:32:46 MarkDuplicates Tracking 1380449 as yet unmatched pairs. 43651 records in RAM.
INFO 2026-06-08 09:32:48 MarkDuplicates Read 124,000,000 records. Elapsed time: 00:04:50s. Time for last 1,000,000: 2s. Last read position: chr3:101,561,977
INFO 2026-06-08 09:32:48 MarkDuplicates Tracking 1377642 as yet unmatched pairs. 40834 records in RAM.
INFO 2026-06-08 09:32:50 MarkDuplicates Read 125,000,000 records. Elapsed time: 00:04:52s. Time for last 1,000,000: 1s. Last read position: chr3:113,958,463
INFO 2026-06-08 09:32:50 MarkDuplicates Tracking 1375025 as yet unmatched pairs. 38206 records in RAM.
INFO 2026-06-08 09:32:52 MarkDuplicates Read 126,000,000 records. Elapsed time: 00:04:54s. Time for last 1,000,000: 2s. Last read position: chr3:122,703,891
INFO 2026-06-08 09:32:52 MarkDuplicates Tracking 1372800 as yet unmatched pairs. 35965 records in RAM.
INFO 2026-06-08 09:32:54 MarkDuplicates Read 127,000,000 records. Elapsed time: 00:04:56s. Time for last 1,000,000: 2s. Last read position: chr3:127,006,083
INFO 2026-06-08 09:32:54 MarkDuplicates Tracking 1369605 as yet unmatched pairs. 32768 records in RAM.
INFO 2026-06-08 09:32:56 MarkDuplicates Read 128,000,000 records. Elapsed time: 00:04:58s. Time for last 1,000,000: 1s. Last read position: chr3:129,519,143
INFO 2026-06-08 09:32:56 MarkDuplicates Tracking 1366898 as yet unmatched pairs. 30051 records in RAM.
INFO 2026-06-08 09:32:59 MarkDuplicates Read 129,000,000 records. Elapsed time: 00:05:01s. Time for last 1,000,000: 2s. Last read position: chr3:138,656,245
INFO 2026-06-08 09:32:59 MarkDuplicates Tracking 1364111 as yet unmatched pairs. 27259 records in RAM.
INFO 2026-06-08 09:33:01 MarkDuplicates Read 130,000,000 records. Elapsed time: 00:05:03s. Time for last 1,000,000: 2s. Last read position: chr3:149,520,779
INFO 2026-06-08 09:33:01 MarkDuplicates Tracking 1363298 as yet unmatched pairs. 26441 records in RAM.
INFO 2026-06-08 09:33:03 MarkDuplicates Read 131,000,000 records. Elapsed time: 00:05:06s. Time for last 1,000,000: 2s. Last read position: chr3:160,426,105
INFO 2026-06-08 09:33:03 MarkDuplicates Tracking 1359030 as yet unmatched pairs. 22161 records in RAM.
INFO 2026-06-08 09:33:05 MarkDuplicates Read 132,000,000 records. Elapsed time: 00:05:08s. Time for last 1,000,000: 1s. Last read position: chr3:177,038,391
INFO 2026-06-08 09:33:05 MarkDuplicates Tracking 1356716 as yet unmatched pairs. 19826 records in RAM.
INFO 2026-06-08 09:33:07 MarkDuplicates Read 133,000,000 records. Elapsed time: 00:05:10s. Time for last 1,000,000: 2s. Last read position: chr3:184,302,720
INFO 2026-06-08 09:33:07 MarkDuplicates Tracking 1353853 as yet unmatched pairs. 16953 records in RAM.
INFO 2026-06-08 09:33:10 MarkDuplicates Read 134,000,000 records. Elapsed time: 00:05:12s. Time for last 1,000,000: 2s. Last read position: chr3:186,613,004
INFO 2026-06-08 09:33:10 MarkDuplicates Tracking 1350873 as yet unmatched pairs. 13966 records in RAM.
INFO 2026-06-08 09:33:12 MarkDuplicates Read 135,000,000 records. Elapsed time: 00:05:14s. Time for last 1,000,000: 2s. Last read position: chr3:194,427,112
INFO 2026-06-08 09:33:12 MarkDuplicates Tracking 1349177 as yet unmatched pairs. 12261 records in RAM.
INFO 2026-06-08 09:33:14 MarkDuplicates Read 136,000,000 records. Elapsed time: 00:05:16s. Time for last 1,000,000: 1s. Last read position: chr3:195,778,882
INFO 2026-06-08 09:33:14 MarkDuplicates Tracking 1348154 as yet unmatched pairs. 11238 records in RAM.
INFO 2026-06-08 09:33:16 MarkDuplicates Read 137,000,000 records. Elapsed time: 00:05:19s. Time for last 1,000,000: 2s. Last read position: chr3:195,780,757
INFO 2026-06-08 09:33:16 MarkDuplicates Tracking 1355067 as yet unmatched pairs. 18149 records in RAM.
INFO 2026-06-08 09:33:19 MarkDuplicates Read 138,000,000 records. Elapsed time: 00:05:21s. Time for last 1,000,000: 2s. Last read position: chr3:195,782,611
INFO 2026-06-08 09:33:19 MarkDuplicates Tracking 1353614 as yet unmatched pairs. 16694 records in RAM.
INFO 2026-06-08 09:33:21 MarkDuplicates Read 139,000,000 records. Elapsed time: 00:05:23s. Time for last 1,000,000: 2s. Last read position: chr3:195,784,675
INFO 2026-06-08 09:33:21 MarkDuplicates Tracking 1352540 as yet unmatched pairs. 15615 records in RAM.
INFO 2026-06-08 09:33:23 MarkDuplicates Read 140,000,000 records. Elapsed time: 00:05:25s. Time for last 1,000,000: 1s. Last read position: chr3:195,786,848
INFO 2026-06-08 09:33:23 MarkDuplicates Tracking 1345782 as yet unmatched pairs. 8850 records in RAM.
INFO 2026-06-08 09:33:25 MarkDuplicates Read 141,000,000 records. Elapsed time: 00:05:27s. Time for last 1,000,000: 2s. Last read position: chr3:196,074,072
INFO 2026-06-08 09:33:25 MarkDuplicates Tracking 1339461 as yet unmatched pairs. 2528 records in RAM.
INFO 2026-06-08 09:33:27 MarkDuplicates Read 142,000,000 records. Elapsed time: 00:05:30s. Time for last 1,000,000: 2s. Last read position: chr4:913,621
INFO 2026-06-08 09:33:27 MarkDuplicates Tracking 1336365 as yet unmatched pairs. 35891 records in RAM.
INFO 2026-06-08 09:33:30 MarkDuplicates Read 143,000,000 records. Elapsed time: 00:05:32s. Time for last 1,000,000: 2s. Last read position: chr4:2,742,286
INFO 2026-06-08 09:33:30 MarkDuplicates Tracking 1332879 as yet unmatched pairs. 32392 records in RAM.
INFO 2026-06-08 09:33:32 MarkDuplicates Read 144,000,000 records. Elapsed time: 00:05:34s. Time for last 1,000,000: 2s. Last read position: chr4:7,778,796
INFO 2026-06-08 09:33:32 MarkDuplicates Tracking 1330399 as yet unmatched pairs. 29880 records in RAM.
INFO 2026-06-08 09:33:34 MarkDuplicates Read 145,000,000 records. Elapsed time: 00:05:37s. Time for last 1,000,000: 2s. Last read position: chr4:24,576,256
INFO 2026-06-08 09:33:34 MarkDuplicates Tracking 1327470 as yet unmatched pairs. 26937 records in RAM.
INFO 2026-06-08 09:33:36 MarkDuplicates Read 146,000,000 records. Elapsed time: 00:05:39s. Time for last 1,000,000: 1s. Last read position: chr4:41,014,210
INFO 2026-06-08 09:33:36 MarkDuplicates Tracking 1324346 as yet unmatched pairs. 23797 records in RAM.
INFO 2026-06-08 09:33:38 MarkDuplicates Read 147,000,000 records. Elapsed time: 00:05:41s. Time for last 1,000,000: 2s. Last read position: chr4:57,024,106
INFO 2026-06-08 09:33:38 MarkDuplicates Tracking 1321828 as yet unmatched pairs. 21261 records in RAM.
INFO 2026-06-08 09:33:41 MarkDuplicates Read 148,000,000 records. Elapsed time: 00:05:43s. Time for last 1,000,000: 2s. Last read position: chr4:76,163,231
INFO 2026-06-08 09:33:41 MarkDuplicates Tracking 1319710 as yet unmatched pairs. 19138 records in RAM.
INFO 2026-06-08 09:33:43 MarkDuplicates Read 149,000,000 records. Elapsed time: 00:05:45s. Time for last 1,000,000: 2s. Last read position: chr4:82,857,740
INFO 2026-06-08 09:33:43 MarkDuplicates Tracking 1316719 as yet unmatched pairs. 16133 records in RAM.
INFO 2026-06-08 09:33:45 MarkDuplicates Read 150,000,000 records. Elapsed time: 00:05:47s. Time for last 1,000,000: 1s. Last read position: chr4:99,916,120
INFO 2026-06-08 09:33:45 MarkDuplicates Tracking 1314065 as yet unmatched pairs. 13466 records in RAM.
INFO 2026-06-08 09:33:48 MarkDuplicates Read 151,000,000 records. Elapsed time: 00:05:50s. Time for last 1,000,000: 2s. Last read position: chr4:119,027,392
INFO 2026-06-08 09:33:48 MarkDuplicates Tracking 1311728 as yet unmatched pairs. 11114 records in RAM.
INFO 2026-06-08 09:33:50 MarkDuplicates Read 152,000,000 records. Elapsed time: 00:05:52s. Time for last 1,000,000: 2s. Last read position: chr4:139,441,817
INFO 2026-06-08 09:33:50 MarkDuplicates Tracking 1309025 as yet unmatched pairs. 8406 records in RAM.
INFO 2026-06-08 09:33:52 MarkDuplicates Read 153,000,000 records. Elapsed time: 00:05:54s. Time for last 1,000,000: 1s. Last read position: chr4:151,175,005
INFO 2026-06-08 09:33:52 MarkDuplicates Tracking 1307497 as yet unmatched pairs. 6865 records in RAM.
INFO 2026-06-08 09:33:54 MarkDuplicates Read 154,000,000 records. Elapsed time: 00:05:56s. Time for last 1,000,000: 2s. Last read position: chr4:168,926,293
INFO 2026-06-08 09:33:54 MarkDuplicates Tracking 1304282 as yet unmatched pairs. 3645 records in RAM.
INFO 2026-06-08 09:33:56 MarkDuplicates Read 155,000,000 records. Elapsed time: 00:05:58s. Time for last 1,000,000: 2s. Last read position: chr4:186,621,229
INFO 2026-06-08 09:33:56 MarkDuplicates Tracking 1301382 as yet unmatched pairs. 740 records in RAM.
INFO 2026-06-08 09:33:58 MarkDuplicates Read 156,000,000 records. Elapsed time: 00:06:01s. Time for last 1,000,000: 2s. Last read position: chr5:6,611,770
INFO 2026-06-08 09:33:58 MarkDuplicates Tracking 1298595 as yet unmatched pairs. 57112 records in RAM.
INFO 2026-06-08 09:34:00 MarkDuplicates Read 157,000,000 records. Elapsed time: 00:06:03s. Time for last 1,000,000: 1s. Last read position: chr5:14,369,473
INFO 2026-06-08 09:34:00 MarkDuplicates Tracking 1296558 as yet unmatched pairs. 55070 records in RAM.
INFO 2026-06-08 09:34:02 MarkDuplicates Read 158,000,000 records. Elapsed time: 00:06:05s. Time for last 1,000,000: 2s. Last read position: chr5:16,763,708
INFO 2026-06-08 09:34:02 MarkDuplicates Tracking 1292770 as yet unmatched pairs. 51272 records in RAM.
INFO 2026-06-08 09:34:04 MarkDuplicates Read 159,000,000 records. Elapsed time: 00:06:07s. Time for last 1,000,000: 2s. Last read position: chr5:37,317,991
INFO 2026-06-08 09:34:04 MarkDuplicates Tracking 1290224 as yet unmatched pairs. 48700 records in RAM.
INFO 2026-06-08 09:34:06 MarkDuplicates Read 160,000,000 records. Elapsed time: 00:06:09s. Time for last 1,000,000: 1s. Last read position: chr5:52,927,632
INFO 2026-06-08 09:34:06 MarkDuplicates Tracking 1288127 as yet unmatched pairs. 46593 records in RAM.
INFO 2026-06-08 09:34:08 MarkDuplicates Read 161,000,000 records. Elapsed time: 00:06:11s. Time for last 1,000,000: 2s. Last read position: chr5:66,053,763
INFO 2026-06-08 09:34:08 MarkDuplicates Tracking 1285565 as yet unmatched pairs. 44017 records in RAM.
INFO 2026-06-08 09:34:11 MarkDuplicates Read 162,000,000 records. Elapsed time: 00:06:13s. Time for last 1,000,000: 2s. Last read position: chr5:73,498,664
INFO 2026-06-08 09:34:11 MarkDuplicates Tracking 1283943 as yet unmatched pairs. 42379 records in RAM.
INFO 2026-06-08 09:34:12 MarkDuplicates Read 163,000,000 records. Elapsed time: 00:06:15s. Time for last 1,000,000: 1s. Last read position: chr5:82,276,184
INFO 2026-06-08 09:34:12 MarkDuplicates Tracking 1285109 as yet unmatched pairs. 43527 records in RAM.
INFO 2026-06-08 09:34:14 MarkDuplicates Read 164,000,000 records. Elapsed time: 00:06:17s. Time for last 1,000,000: 2s. Last read position: chr5:96,746,341
INFO 2026-06-08 09:34:14 MarkDuplicates Tracking 1279168 as yet unmatched pairs. 37571 records in RAM.
INFO 2026-06-08 09:34:17 MarkDuplicates Read 165,000,000 records. Elapsed time: 00:06:19s. Time for last 1,000,000: 2s. Last read position: chr5:122,946,091
INFO 2026-06-08 09:34:17 MarkDuplicates Tracking 1275899 as yet unmatched pairs. 34293 records in RAM.
INFO 2026-06-08 09:34:19 MarkDuplicates Read 166,000,000 records. Elapsed time: 00:06:21s. Time for last 1,000,000: 1s. Last read position: chr5:134,158,560
INFO 2026-06-08 09:34:19 MarkDuplicates Tracking 1274047 as yet unmatched pairs. 32421 records in RAM.
INFO 2026-06-08 09:34:21 MarkDuplicates Read 167,000,000 records. Elapsed time: 00:06:24s. Time for last 1,000,000: 2s. Last read position: chr5:138,518,784
INFO 2026-06-08 09:34:21 MarkDuplicates Tracking 1271081 as yet unmatched pairs. 29450 records in RAM.
INFO 2026-06-08 09:34:23 MarkDuplicates Read 168,000,000 records. Elapsed time: 00:06:26s. Time for last 1,000,000: 2s. Last read position: chr5:141,179,816
INFO 2026-06-08 09:34:23 MarkDuplicates Tracking 1267922 as yet unmatched pairs. 26270 records in RAM.
INFO 2026-06-08 09:34:25 MarkDuplicates Read 169,000,000 records. Elapsed time: 00:06:27s. Time for last 1,000,000: 1s. Last read position: chr5:142,770,719
INFO 2026-06-08 09:34:25 MarkDuplicates Tracking 1265298 as yet unmatched pairs. 23642 records in RAM.
INFO 2026-06-08 09:34:27 MarkDuplicates Read 170,000,000 records. Elapsed time: 00:06:30s. Time for last 1,000,000: 2s. Last read position: chr5:150,135,633
INFO 2026-06-08 09:34:27 MarkDuplicates Tracking 1263277 as yet unmatched pairs. 21615 records in RAM.
INFO 2026-06-08 09:34:29 MarkDuplicates Read 171,000,000 records. Elapsed time: 00:06:32s. Time for last 1,000,000: 2s. Last read position: chr5:150,406,270
INFO 2026-06-08 09:34:29 MarkDuplicates Tracking 1268992 as yet unmatched pairs. 27330 records in RAM.
INFO 2026-06-08 09:34:31 MarkDuplicates Read 172,000,000 records. Elapsed time: 00:06:34s. Time for last 1,000,000: 1s. Last read position: chr5:151,671,607
INFO 2026-06-08 09:34:31 MarkDuplicates Tracking 1257398 as yet unmatched pairs. 15735 records in RAM.
INFO 2026-06-08 09:34:33 MarkDuplicates Read 173,000,000 records. Elapsed time: 00:06:36s. Time for last 1,000,000: 2s. Last read position: chr5:169,684,250
INFO 2026-06-08 09:34:33 MarkDuplicates Tracking 1254411 as yet unmatched pairs. 12738 records in RAM.
INFO 2026-06-08 09:34:36 MarkDuplicates Read 174,000,000 records. Elapsed time: 00:06:38s. Time for last 1,000,000: 2s. Last read position: chr5:172,909,695
INFO 2026-06-08 09:34:36 MarkDuplicates Tracking 1252223 as yet unmatched pairs. 10543 records in RAM.
INFO 2026-06-08 09:34:37 MarkDuplicates Read 175,000,000 records. Elapsed time: 00:06:40s. Time for last 1,000,000: 1s. Last read position: chr5:177,467,773
INFO 2026-06-08 09:34:37 MarkDuplicates Tracking 1249422 as yet unmatched pairs. 7725 records in RAM.
INFO 2026-06-08 09:34:40 MarkDuplicates Read 176,000,000 records. Elapsed time: 00:06:42s. Time for last 1,000,000: 2s. Last read position: chr5:179,768,946
INFO 2026-06-08 09:34:40 MarkDuplicates Tracking 1246520 as yet unmatched pairs. 4817 records in RAM.
INFO 2026-06-08 09:34:42 MarkDuplicates Read 177,000,000 records. Elapsed time: 00:06:44s. Time for last 1,000,000: 2s. Last read position: chr5:179,899,269
INFO 2026-06-08 09:34:42 MarkDuplicates Tracking 1243234 as yet unmatched pairs. 1531 records in RAM.
INFO 2026-06-08 09:34:44 MarkDuplicates Read 178,000,000 records. Elapsed time: 00:06:47s. Time for last 1,000,000: 2s. Last read position: chr6:2,840,467
INFO 2026-06-08 09:34:44 MarkDuplicates Tracking 1241113 as yet unmatched pairs. 89813 records in RAM.
INFO 2026-06-08 09:34:47 MarkDuplicates Read 179,000,000 records. Elapsed time: 00:06:49s. Time for last 1,000,000: 2s. Last read position: chr6:7,559,362
INFO 2026-06-08 09:34:47 MarkDuplicates Tracking 1237896 as yet unmatched pairs. 86581 records in RAM.
INFO 2026-06-08 09:34:49 MarkDuplicates Read 180,000,000 records. Elapsed time: 00:06:51s. Time for last 1,000,000: 2s. Last read position: chr6:15,410,256
INFO 2026-06-08 09:34:49 MarkDuplicates Tracking 1234739 as yet unmatched pairs. 83419 records in RAM.
INFO 2026-06-08 09:34:51 MarkDuplicates Read 181,000,000 records. Elapsed time: 00:06:54s. Time for last 1,000,000: 2s. Last read position: chr6:26,123,760
INFO 2026-06-08 09:34:51 MarkDuplicates Tracking 1232069 as yet unmatched pairs. 80736 records in RAM.
INFO 2026-06-08 09:34:53 MarkDuplicates Read 182,000,000 records. Elapsed time: 00:06:55s. Time for last 1,000,000: 1s. Last read position: chr6:27,867,105
INFO 2026-06-08 09:34:53 MarkDuplicates Tracking 1229820 as yet unmatched pairs. 78478 records in RAM.
INFO 2026-06-08 09:34:55 MarkDuplicates Read 183,000,000 records. Elapsed time: 00:06:57s. Time for last 1,000,000: 1s. Last read position: chr6:29,943,473
INFO 2026-06-08 09:34:55 MarkDuplicates Tracking 1232148 as yet unmatched pairs. 80796 records in RAM.
INFO 2026-06-08 09:34:57 MarkDuplicates Read 184,000,000 records. Elapsed time: 00:06:59s. Time for last 1,000,000: 1s. Last read position: chr6:30,491,288
INFO 2026-06-08 09:34:57 MarkDuplicates Tracking 1226298 as yet unmatched pairs. 74940 records in RAM.
INFO 2026-06-08 09:34:59 MarkDuplicates Read 185,000,000 records. Elapsed time: 00:07:01s. Time for last 1,000,000: 2s. Last read position: chr6:30,894,550
INFO 2026-06-08 09:34:59 MarkDuplicates Tracking 1224252 as yet unmatched pairs. 72893 records in RAM.
INFO 2026-06-08 09:35:01 MarkDuplicates Read 186,000,000 records. Elapsed time: 00:07:03s. Time for last 1,000,000: 2s. Last read position: chr6:31,271,771
INFO 2026-06-08 09:35:01 MarkDuplicates Tracking 1233036 as yet unmatched pairs. 81662 records in RAM.
INFO 2026-06-08 09:35:03 MarkDuplicates Read 187,000,000 records. Elapsed time: 00:07:05s. Time for last 1,000,000: 1s. Last read position: chr6:31,626,798
INFO 2026-06-08 09:35:03 MarkDuplicates Tracking 1217203 as yet unmatched pairs. 65824 records in RAM.
INFO 2026-06-08 09:35:05 MarkDuplicates Read 188,000,000 records. Elapsed time: 00:07:07s. Time for last 1,000,000: 2s. Last read position: chr6:31,740,591
INFO 2026-06-08 09:35:05 MarkDuplicates Tracking 1214196 as yet unmatched pairs. 62806 records in RAM.
INFO 2026-06-08 09:35:07 MarkDuplicates Read 189,000,000 records. Elapsed time: 00:07:09s. Time for last 1,000,000: 1s. Last read position: chr6:31,962,991
INFO 2026-06-08 09:35:07 MarkDuplicates Tracking 1211939 as yet unmatched pairs. 60546 records in RAM.
INFO 2026-06-08 09:35:09 MarkDuplicates Read 190,000,000 records. Elapsed time: 00:07:11s. Time for last 1,000,000: 1s. Last read position: chr6:32,578,997
INFO 2026-06-08 09:35:09 MarkDuplicates Tracking 1210314 as yet unmatched pairs. 58918 records in RAM.
INFO 2026-06-08 09:35:11 MarkDuplicates Read 191,000,000 records. Elapsed time: 00:07:13s. Time for last 1,000,000: 2s. Last read position: chr6:33,085,037
INFO 2026-06-08 09:35:11 MarkDuplicates Tracking 1207195 as yet unmatched pairs. 55793 records in RAM.
INFO 2026-06-08 09:35:13 MarkDuplicates Read 192,000,000 records. Elapsed time: 00:07:15s. Time for last 1,000,000: 2s. Last read position: chr6:33,621,634
INFO 2026-06-08 09:35:13 MarkDuplicates Tracking 1204857 as yet unmatched pairs. 53445 records in RAM.
INFO 2026-06-08 09:35:15 MarkDuplicates Read 193,000,000 records. Elapsed time: 00:07:17s. Time for last 1,000,000: 1s. Last read position: chr6:34,590,564
INFO 2026-06-08 09:35:15 MarkDuplicates Tracking 1201224 as yet unmatched pairs. 49805 records in RAM.
INFO 2026-06-08 09:35:17 MarkDuplicates Read 194,000,000 records. Elapsed time: 00:07:19s. Time for last 1,000,000: 2s. Last read position: chr6:38,061,705
INFO 2026-06-08 09:35:17 MarkDuplicates Tracking 1198081 as yet unmatched pairs. 46640 records in RAM.
INFO 2026-06-08 09:35:19 MarkDuplicates Read 195,000,000 records. Elapsed time: 00:07:22s. Time for last 1,000,000: 2s. Last read position: chr6:43,065,662
INFO 2026-06-08 09:35:19 MarkDuplicates Tracking 1195403 as yet unmatched pairs. 43951 records in RAM.
INFO 2026-06-08 09:35:21 MarkDuplicates Read 196,000,000 records. Elapsed time: 00:07:24s. Time for last 1,000,000: 1s. Last read position: chr6:44,253,509
INFO 2026-06-08 09:35:21 MarkDuplicates Tracking 1194601 as yet unmatched pairs. 43147 records in RAM.
INFO 2026-06-08 09:35:23 MarkDuplicates Read 197,000,000 records. Elapsed time: 00:07:26s. Time for last 1,000,000: 2s. Last read position: chr6:56,482,117
INFO 2026-06-08 09:35:23 MarkDuplicates Tracking 1190289 as yet unmatched pairs. 38792 records in RAM.
INFO 2026-06-08 09:35:26 MarkDuplicates Read 198,000,000 records. Elapsed time: 00:07:28s. Time for last 1,000,000: 2s. Last read position: chr6:69,676,179
INFO 2026-06-08 09:35:26 MarkDuplicates Tracking 1188158 as yet unmatched pairs. 36655 records in RAM.
INFO 2026-06-08 09:35:28 MarkDuplicates Read 199,000,000 records. Elapsed time: 00:07:30s. Time for last 1,000,000: 2s. Last read position: chr6:75,914,833
INFO 2026-06-08 09:35:28 MarkDuplicates Tracking 1185434 as yet unmatched pairs. 33929 records in RAM.
INFO 2026-06-08 09:35:30 MarkDuplicates Read 200,000,000 records. Elapsed time: 00:07:32s. Time for last 1,000,000: 1s. Last read position: chr6:89,081,146
INFO 2026-06-08 09:35:30 MarkDuplicates Tracking 1182693 as yet unmatched pairs. 31175 records in RAM.
INFO 2026-06-08 09:35:32 MarkDuplicates Read 201,000,000 records. Elapsed time: 00:07:34s. Time for last 1,000,000: 2s. Last read position: chr6:107,929,454
INFO 2026-06-08 09:35:32 MarkDuplicates Tracking 1180080 as yet unmatched pairs. 28555 records in RAM.
INFO 2026-06-08 09:35:34 MarkDuplicates Read 202,000,000 records. Elapsed time: 00:07:36s. Time for last 1,000,000: 2s. Last read position: chr6:116,120,182
INFO 2026-06-08 09:35:34 MarkDuplicates Tracking 1177392 as yet unmatched pairs. 25847 records in RAM.
INFO 2026-06-08 09:35:36 MarkDuplicates Read 203,000,000 records. Elapsed time: 00:07:38s. Time for last 1,000,000: 1s. Last read position: chr6:131,623,373
INFO 2026-06-08 09:35:36 MarkDuplicates Tracking 1174845 as yet unmatched pairs. 23286 records in RAM.
INFO 2026-06-08 09:35:38 MarkDuplicates Read 204,000,000 records. Elapsed time: 00:07:40s. Time for last 1,000,000: 2s. Last read position: chr6:138,412,879
INFO 2026-06-08 09:35:38 MarkDuplicates Tracking 1173068 as yet unmatched pairs. 21506 records in RAM.
INFO 2026-06-08 09:35:40 MarkDuplicates Read 205,000,000 records. Elapsed time: 00:07:42s. Time for last 1,000,000: 2s. Last read position: chr6:149,526,678
INFO 2026-06-08 09:35:40 MarkDuplicates Tracking 1169477 as yet unmatched pairs. 17904 records in RAM.
INFO 2026-06-08 09:35:41 MarkDuplicates Read 206,000,000 records. Elapsed time: 00:07:44s. Time for last 1,000,000: 1s. Last read position: chr6:151,351,357
INFO 2026-06-08 09:35:41 MarkDuplicates Tracking 1167948 as yet unmatched pairs. 16370 records in RAM.
INFO 2026-06-08 09:35:43 MarkDuplicates Read 207,000,000 records. Elapsed time: 00:07:46s. Time for last 1,000,000: 2s. Last read position: chr6:156,779,424
INFO 2026-06-08 09:35:43 MarkDuplicates Tracking 1164998 as yet unmatched pairs. 13420 records in RAM.
INFO 2026-06-08 09:35:46 MarkDuplicates Read 208,000,000 records. Elapsed time: 00:07:48s. Time for last 1,000,000: 2s. Last read position: chr6:158,767,364
INFO 2026-06-08 09:35:46 MarkDuplicates Tracking 1169584 as yet unmatched pairs. 18006 records in RAM.
INFO 2026-06-08 09:35:48 MarkDuplicates Read 209,000,000 records. Elapsed time: 00:07:50s. Time for last 1,000,000: 2s. Last read position: chr6:158,783,547
INFO 2026-06-08 09:35:48 MarkDuplicates Tracking 1174760 as yet unmatched pairs. 23172 records in RAM.
INFO 2026-06-08 09:35:50 MarkDuplicates Read 210,000,000 records. Elapsed time: 00:07:52s. Time for last 1,000,000: 2s. Last read position: chr6:158,794,189
INFO 2026-06-08 09:35:50 MarkDuplicates Tracking 1156383 as yet unmatched pairs. 4791 records in RAM.
INFO 2026-06-08 09:35:52 MarkDuplicates Read 211,000,000 records. Elapsed time: 00:07:54s. Time for last 1,000,000: 2s. Last read position: chr6:167,864,626
INFO 2026-06-08 09:35:52 MarkDuplicates Tracking 1154378 as yet unmatched pairs. 2769 records in RAM.
INFO 2026-06-08 09:35:55 MarkDuplicates Read 212,000,000 records. Elapsed time: 00:07:57s. Time for last 1,000,000: 2s. Last read position: chr7:890,944
INFO 2026-06-08 09:35:55 MarkDuplicates Tracking 1151043 as yet unmatched pairs. 97464 records in RAM.
INFO 2026-06-08 09:35:57 MarkDuplicates Read 213,000,000 records. Elapsed time: 00:07:59s. Time for last 1,000,000: 2s. Last read position: chr7:2,572,236
INFO 2026-06-08 09:35:57 MarkDuplicates Tracking 1147513 as yet unmatched pairs. 93921 records in RAM.
INFO 2026-06-08 09:35:59 MarkDuplicates Read 214,000,000 records. Elapsed time: 00:08:02s. Time for last 1,000,000: 2s. Last read position: chr7:5,376,914
INFO 2026-06-08 09:35:59 MarkDuplicates Tracking 1144944 as yet unmatched pairs. 91347 records in RAM.
INFO 2026-06-08 09:36:01 MarkDuplicates Read 215,000,000 records. Elapsed time: 00:08:03s. Time for last 1,000,000: 1s. Last read position: chr7:5,528,055
INFO 2026-06-08 09:36:01 MarkDuplicates Tracking 1155432 as yet unmatched pairs. 101828 records in RAM.
INFO 2026-06-08 09:36:03 MarkDuplicates Read 216,000,000 records. Elapsed time: 00:08:06s. Time for last 1,000,000: 2s. Last read position: chr7:5,528,701
INFO 2026-06-08 09:36:03 MarkDuplicates Tracking 1146253 as yet unmatched pairs. 92645 records in RAM.
INFO 2026-06-08 09:36:05 MarkDuplicates Read 217,000,000 records. Elapsed time: 00:08:08s. Time for last 1,000,000: 2s. Last read position: chr7:6,054,680
INFO 2026-06-08 09:36:05 MarkDuplicates Tracking 1135368 as yet unmatched pairs. 81757 records in RAM.
INFO 2026-06-08 09:36:07 MarkDuplicates Read 218,000,000 records. Elapsed time: 00:08:10s. Time for last 1,000,000: 1s. Last read position: chr7:17,340,146
INFO 2026-06-08 09:36:07 MarkDuplicates Tracking 1133078 as yet unmatched pairs. 79452 records in RAM.
INFO 2026-06-08 09:36:09 MarkDuplicates Read 219,000,000 records. Elapsed time: 00:08:12s. Time for last 1,000,000: 2s. Last read position: chr7:27,110,292
INFO 2026-06-08 09:36:09 MarkDuplicates Tracking 1130436 as yet unmatched pairs. 76795 records in RAM.
INFO 2026-06-08 09:36:12 MarkDuplicates Read 220,000,000 records. Elapsed time: 00:08:14s. Time for last 1,000,000: 2s. Last read position: chr7:36,297,124
INFO 2026-06-08 09:36:12 MarkDuplicates Tracking 1127579 as yet unmatched pairs. 73903 records in RAM.
INFO 2026-06-08 09:36:14 MarkDuplicates Read 221,000,000 records. Elapsed time: 00:08:16s. Time for last 1,000,000: 2s. Last read position: chr7:44,111,127
INFO 2026-06-08 09:36:14 MarkDuplicates Tracking 1125174 as yet unmatched pairs. 71482 records in RAM.
INFO 2026-06-08 09:36:16 MarkDuplicates Read 222,000,000 records. Elapsed time: 00:08:18s. Time for last 1,000,000: 2s. Last read position: chr7:45,917,312
INFO 2026-06-08 09:36:16 MarkDuplicates Tracking 1122643 as yet unmatched pairs. 68948 records in RAM.
INFO 2026-06-08 09:36:18 MarkDuplicates Read 223,000,000 records. Elapsed time: 00:08:20s. Time for last 1,000,000: 2s. Last read position: chr7:55,953,191
INFO 2026-06-08 09:36:18 MarkDuplicates Tracking 1119280 as yet unmatched pairs. 65575 records in RAM.
INFO 2026-06-08 09:36:20 MarkDuplicates Read 224,000,000 records. Elapsed time: 00:08:22s. Time for last 1,000,000: 1s. Last read position: chr7:72,942,320
INFO 2026-06-08 09:36:20 MarkDuplicates Tracking 1117139 as yet unmatched pairs. 63428 records in RAM.
INFO 2026-06-08 09:36:22 MarkDuplicates Read 225,000,000 records. Elapsed time: 00:08:24s. Time for last 1,000,000: 1s. Last read position: chr7:73,831,178
INFO 2026-06-08 09:36:22 MarkDuplicates Tracking 1117773 as yet unmatched pairs. 64062 records in RAM.
INFO 2026-06-08 09:36:23 MarkDuplicates Read 226,000,000 records. Elapsed time: 00:08:26s. Time for last 1,000,000: 1s. Last read position: chr7:75,188,075
INFO 2026-06-08 09:36:23 MarkDuplicates Tracking 1113415 as yet unmatched pairs. 59698 records in RAM.
INFO 2026-06-08 09:36:25 MarkDuplicates Read 227,000,000 records. Elapsed time: 00:08:28s. Time for last 1,000,000: 1s. Last read position: chr7:76,302,840
INFO 2026-06-08 09:36:25 MarkDuplicates Tracking 1113185 as yet unmatched pairs. 59466 records in RAM.
INFO 2026-06-08 09:36:27 MarkDuplicates Read 228,000,000 records. Elapsed time: 00:08:30s. Time for last 1,000,000: 2s. Last read position: chr7:77,627,576
INFO 2026-06-08 09:36:27 MarkDuplicates Tracking 1108814 as yet unmatched pairs. 55077 records in RAM.
INFO 2026-06-08 09:36:29 MarkDuplicates Read 229,000,000 records. Elapsed time: 00:08:32s. Time for last 1,000,000: 1s. Last read position: chr7:92,126,312
INFO 2026-06-08 09:36:29 MarkDuplicates Tracking 1105797 as yet unmatched pairs. 52055 records in RAM.
INFO 2026-06-08 09:36:31 MarkDuplicates Read 230,000,000 records. Elapsed time: 00:08:34s. Time for last 1,000,000: 2s. Last read position: chr7:94,418,498
INFO 2026-06-08 09:36:31 MarkDuplicates Tracking 1104330 as yet unmatched pairs. 50584 records in RAM.
INFO 2026-06-08 09:36:34 MarkDuplicates Read 231,000,000 records. Elapsed time: 00:08:36s. Time for last 1,000,000: 2s. Last read position: chr7:98,282,391
INFO 2026-06-08 09:36:34 MarkDuplicates Tracking 1103053 as yet unmatched pairs. 49298 records in RAM.
INFO 2026-06-08 09:36:35 MarkDuplicates Read 232,000,000 records. Elapsed time: 00:08:38s. Time for last 1,000,000: 1s. Last read position: chr7:99,573,199
INFO 2026-06-08 09:36:35 MarkDuplicates Tracking 1096819 as yet unmatched pairs. 43063 records in RAM.
INFO 2026-06-08 09:36:38 MarkDuplicates Read 233,000,000 records. Elapsed time: 00:08:40s. Time for last 1,000,000: 2s. Last read position: chr7:100,478,003
INFO 2026-06-08 09:36:38 MarkDuplicates Tracking 1094945 as yet unmatched pairs. 41179 records in RAM.
INFO 2026-06-08 09:36:40 MarkDuplicates Read 234,000,000 records. Elapsed time: 00:08:42s. Time for last 1,000,000: 2s. Last read position: chr7:100,958,063
INFO 2026-06-08 09:36:40 MarkDuplicates Tracking 1091145 as yet unmatched pairs. 37358 records in RAM.
INFO 2026-06-08 09:36:42 MarkDuplicates Read 235,000,000 records. Elapsed time: 00:08:44s. Time for last 1,000,000: 1s. Last read position: chr7:101,000,651
INFO 2026-06-08 09:36:42 MarkDuplicates Tracking 1090836 as yet unmatched pairs. 37048 records in RAM.
INFO 2026-06-08 09:36:43 MarkDuplicates Read 236,000,000 records. Elapsed time: 00:08:46s. Time for last 1,000,000: 1s. Last read position: chr7:101,043,514
INFO 2026-06-08 09:36:43 MarkDuplicates Tracking 1089006 as yet unmatched pairs. 35218 records in RAM.
INFO 2026-06-08 09:36:45 MarkDuplicates Read 237,000,000 records. Elapsed time: 00:08:48s. Time for last 1,000,000: 1s. Last read position: chr7:102,493,126
INFO 2026-06-08 09:36:45 MarkDuplicates Tracking 1085819 as yet unmatched pairs. 32027 records in RAM.
INFO 2026-06-08 09:36:47 MarkDuplicates Read 238,000,000 records. Elapsed time: 00:08:49s. Time for last 1,000,000: 1s. Last read position: chr7:103,367,711
INFO 2026-06-08 09:36:47 MarkDuplicates Tracking 1084616 as yet unmatched pairs. 30821 records in RAM.
INFO 2026-06-08 09:36:49 MarkDuplicates Read 239,000,000 records. Elapsed time: 00:08:51s. Time for last 1,000,000: 1s. Last read position: chr7:112,450,499
INFO 2026-06-08 09:36:49 MarkDuplicates Tracking 1082289 as yet unmatched pairs. 28474 records in RAM.
INFO 2026-06-08 09:36:51 MarkDuplicates Read 240,000,000 records. Elapsed time: 00:08:53s. Time for last 1,000,000: 2s. Last read position: chr7:116,759,452
INFO 2026-06-08 09:36:51 MarkDuplicates Tracking 1083142 as yet unmatched pairs. 29324 records in RAM.
INFO 2026-06-08 09:36:53 MarkDuplicates Read 241,000,000 records. Elapsed time: 00:08:55s. Time for last 1,000,000: 2s. Last read position: chr7:127,591,246
INFO 2026-06-08 09:36:53 MarkDuplicates Tracking 1077620 as yet unmatched pairs. 23797 records in RAM.
INFO 2026-06-08 09:36:55 MarkDuplicates Read 242,000,000 records. Elapsed time: 00:08:57s. Time for last 1,000,000: 1s. Last read position: chr7:128,754,261
INFO 2026-06-08 09:36:55 MarkDuplicates Tracking 1074252 as yet unmatched pairs. 20426 records in RAM.
INFO 2026-06-08 09:36:57 MarkDuplicates Read 243,000,000 records. Elapsed time: 00:08:59s. Time for last 1,000,000: 2s. Last read position: chr7:134,928,752
INFO 2026-06-08 09:36:57 MarkDuplicates Tracking 1072286 as yet unmatched pairs. 18457 records in RAM.
INFO 2026-06-08 09:36:59 MarkDuplicates Read 244,000,000 records. Elapsed time: 00:09:01s. Time for last 1,000,000: 2s. Last read position: chr7:139,078,560
INFO 2026-06-08 09:36:59 MarkDuplicates Tracking 1069208 as yet unmatched pairs. 15371 records in RAM.
INFO 2026-06-08 09:37:01 MarkDuplicates Read 245,000,000 records. Elapsed time: 00:09:03s. Time for last 1,000,000: 1s. Last read position: chr7:142,866,173
INFO 2026-06-08 09:37:01 MarkDuplicates Tracking 1066919 as yet unmatched pairs. 13079 records in RAM.
INFO 2026-06-08 09:37:03 MarkDuplicates Read 246,000,000 records. Elapsed time: 00:09:05s. Time for last 1,000,000: 1s. Last read position: chr7:144,282,727
INFO 2026-06-08 09:37:03 MarkDuplicates Tracking 1064467 as yet unmatched pairs. 10617 records in RAM.
INFO 2026-06-08 09:37:05 MarkDuplicates Read 247,000,000 records. Elapsed time: 00:09:07s. Time for last 1,000,000: 1s. Last read position: chr7:150,371,389
INFO 2026-06-08 09:37:05 MarkDuplicates Tracking 1063392 as yet unmatched pairs. 9537 records in RAM.
INFO 2026-06-08 09:37:07 MarkDuplicates Read 248,000,000 records. Elapsed time: 00:09:09s. Time for last 1,000,000: 1s. Last read position: chr7:151,117,117
INFO 2026-06-08 09:37:07 MarkDuplicates Tracking 1058674 as yet unmatched pairs. 4805 records in RAM.
INFO 2026-06-08 09:37:09 MarkDuplicates Read 249,000,000 records. Elapsed time: 00:09:11s. Time for last 1,000,000: 2s. Last read position: chr7:157,005,649
INFO 2026-06-08 09:37:09 MarkDuplicates Tracking 1055731 as yet unmatched pairs. 1838 records in RAM.
INFO 2026-06-08 09:37:11 MarkDuplicates Read 250,000,000 records. Elapsed time: 00:09:14s. Time for last 1,000,000: 2s. Last read position: chr8:9,776,804
INFO 2026-06-08 09:37:11 MarkDuplicates Tracking 1052573 as yet unmatched pairs. 69328 records in RAM.
INFO 2026-06-08 09:37:13 MarkDuplicates Read 251,000,000 records. Elapsed time: 00:09:16s. Time for last 1,000,000: 2s. Last read position: chr8:19,394,548
INFO 2026-06-08 09:37:13 MarkDuplicates Tracking 1050093 as yet unmatched pairs. 66844 records in RAM.
INFO 2026-06-08 09:37:16 MarkDuplicates Read 252,000,000 records. Elapsed time: 00:09:18s. Time for last 1,000,000: 2s. Last read position: chr8:23,302,080
INFO 2026-06-08 09:37:16 MarkDuplicates Tracking 1046928 as yet unmatched pairs. 63674 records in RAM.
INFO 2026-06-08 09:37:18 MarkDuplicates Read 253,000,000 records. Elapsed time: 00:09:20s. Time for last 1,000,000: 1s. Last read position: chr8:29,350,066
INFO 2026-06-08 09:37:18 MarkDuplicates Tracking 1044113 as yet unmatched pairs. 60852 records in RAM.
INFO 2026-06-08 09:37:20 MarkDuplicates Read 254,000,000 records. Elapsed time: 00:09:22s. Time for last 1,000,000: 2s. Last read position: chr8:38,210,136
INFO 2026-06-08 09:37:20 MarkDuplicates Tracking 1041428 as yet unmatched pairs. 58163 records in RAM.
INFO 2026-06-08 09:37:22 MarkDuplicates Read 255,000,000 records. Elapsed time: 00:09:24s. Time for last 1,000,000: 2s. Last read position: chr8:41,932,916
INFO 2026-06-08 09:37:22 MarkDuplicates Tracking 1038574 as yet unmatched pairs. 55301 records in RAM.
INFO 2026-06-08 09:37:24 MarkDuplicates Read 256,000,000 records. Elapsed time: 00:09:26s. Time for last 1,000,000: 1s. Last read position: chr8:53,970,393
INFO 2026-06-08 09:37:24 MarkDuplicates Tracking 1036318 as yet unmatched pairs. 53045 records in RAM.
INFO 2026-06-08 09:37:26 MarkDuplicates Read 257,000,000 records. Elapsed time: 00:09:28s. Time for last 1,000,000: 2s. Last read position: chr8:61,681,000
INFO 2026-06-08 09:37:26 MarkDuplicates Tracking 1035814 as yet unmatched pairs. 52531 records in RAM.
INFO 2026-06-08 09:37:28 MarkDuplicates Read 258,000,000 records. Elapsed time: 00:09:30s. Time for last 1,000,000: 2s. Last read position: chr8:73,291,103
INFO 2026-06-08 09:37:28 MarkDuplicates Tracking 1031973 as yet unmatched pairs. 48688 records in RAM.
INFO 2026-06-08 09:37:30 MarkDuplicates Read 259,000,000 records. Elapsed time: 00:09:32s. Time for last 1,000,000: 1s. Last read position: chr8:94,148,832
INFO 2026-06-08 09:37:30 MarkDuplicates Tracking 1029072 as yet unmatched pairs. 45783 records in RAM.
INFO 2026-06-08 09:37:32 MarkDuplicates Read 260,000,000 records. Elapsed time: 00:09:34s. Time for last 1,000,000: 2s. Last read position: chr8:100,704,936
INFO 2026-06-08 09:37:32 MarkDuplicates Tracking 1029575 as yet unmatched pairs. 46271 records in RAM.
INFO 2026-06-08 09:37:34 MarkDuplicates Read 261,000,000 records. Elapsed time: 00:09:36s. Time for last 1,000,000: 1s. Last read position: chr8:102,225,884
INFO 2026-06-08 09:37:34 MarkDuplicates Tracking 1023055 as yet unmatched pairs. 39745 records in RAM.
INFO 2026-06-08 09:37:36 MarkDuplicates Read 262,000,000 records. Elapsed time: 00:09:38s. Time for last 1,000,000: 2s. Last read position: chr8:119,208,487
INFO 2026-06-08 09:37:36 MarkDuplicates Tracking 1024899 as yet unmatched pairs. 41587 records in RAM.
INFO 2026-06-08 09:37:38 MarkDuplicates Read 263,000,000 records. Elapsed time: 00:09:41s. Time for last 1,000,000: 2s. Last read position: chr8:127,738,743
INFO 2026-06-08 09:37:38 MarkDuplicates Tracking 1019273 as yet unmatched pairs. 35952 records in RAM.
INFO 2026-06-08 09:37:40 MarkDuplicates Read 264,000,000 records. Elapsed time: 00:09:42s. Time for last 1,000,000: 1s. Last read position: chr8:142,727,827
INFO 2026-06-08 09:37:40 MarkDuplicates Tracking 1015091 as yet unmatched pairs. 31759 records in RAM.
INFO 2026-06-08 09:37:42 MarkDuplicates Read 265,000,000 records. Elapsed time: 00:09:45s. Time for last 1,000,000: 2s. Last read position: chr8:143,727,870
INFO 2026-06-08 09:37:42 MarkDuplicates Tracking 1011876 as yet unmatched pairs. 28533 records in RAM.
INFO 2026-06-08 09:37:44 MarkDuplicates Read 266,000,000 records. Elapsed time: 00:09:46s. Time for last 1,000,000: 1s. Last read position: chr8:143,859,718
INFO 2026-06-08 09:37:44 MarkDuplicates Tracking 1009414 as yet unmatched pairs. 26067 records in RAM.
INFO 2026-06-08 09:37:45 MarkDuplicates Read 267,000,000 records. Elapsed time: 00:09:48s. Time for last 1,000,000: 1s. Last read position: chr8:143,862,297
INFO 2026-06-08 09:37:45 MarkDuplicates Tracking 1009093 as yet unmatched pairs. 25745 records in RAM.
INFO 2026-06-08 09:37:47 MarkDuplicates Read 268,000,000 records. Elapsed time: 00:09:49s. Time for last 1,000,000: 1s. Last read position: chr8:143,865,236
INFO 2026-06-08 09:37:47 MarkDuplicates Tracking 1006389 as yet unmatched pairs. 23041 records in RAM.
INFO 2026-06-08 09:37:48 MarkDuplicates Read 269,000,000 records. Elapsed time: 00:09:51s. Time for last 1,000,000: 1s. Last read position: chr8:143,916,564
INFO 2026-06-08 09:37:48 MarkDuplicates Tracking 1007504 as yet unmatched pairs. 24152 records in RAM.
INFO 2026-06-08 09:37:50 MarkDuplicates Read 270,000,000 records. Elapsed time: 00:09:53s. Time for last 1,000,000: 1s. Last read position: chr8:143,919,495
INFO 2026-06-08 09:37:50 MarkDuplicates Tracking 1003426 as yet unmatched pairs. 20074 records in RAM.
INFO 2026-06-08 09:37:52 MarkDuplicates Read 271,000,000 records. Elapsed time: 00:09:55s. Time for last 1,000,000: 2s. Last read position: chr8:143,923,053
INFO 2026-06-08 09:37:52 MarkDuplicates Tracking 997561 as yet unmatched pairs. 14205 records in RAM.
INFO 2026-06-08 09:37:54 MarkDuplicates Read 272,000,000 records. Elapsed time: 00:09:56s. Time for last 1,000,000: 1s. Last read position: chr8:143,929,804
INFO 2026-06-08 09:37:54 MarkDuplicates Tracking 995295 as yet unmatched pairs. 11928 records in RAM.
INFO 2026-06-08 09:37:56 MarkDuplicates Read 273,000,000 records. Elapsed time: 00:09:59s. Time for last 1,000,000: 2s. Last read position: chr8:143,992,580
INFO 2026-06-08 09:37:56 MarkDuplicates Tracking 989593 as yet unmatched pairs. 6224 records in RAM.
INFO 2026-06-08 09:37:59 MarkDuplicates Read 274,000,000 records. Elapsed time: 00:10:01s. Time for last 1,000,000: 2s. Last read position: chr8:144,413,765
INFO 2026-06-08 09:37:59 MarkDuplicates Tracking 985939 as yet unmatched pairs. 2563 records in RAM.
INFO 2026-06-08 09:38:01 MarkDuplicates Read 275,000,000 records. Elapsed time: 00:10:03s. Time for last 1,000,000: 2s. Last read position: chr9:5,468,644
INFO 2026-06-08 09:38:01 MarkDuplicates Tracking 982721 as yet unmatched pairs. 51362 records in RAM.
INFO 2026-06-08 09:38:03 MarkDuplicates Read 276,000,000 records. Elapsed time: 00:10:06s. Time for last 1,000,000: 2s. Last read position: chr9:22,004,904
INFO 2026-06-08 09:38:03 MarkDuplicates Tracking 980227 as yet unmatched pairs. 48843 records in RAM.
INFO 2026-06-08 09:38:05 MarkDuplicates Read 277,000,000 records. Elapsed time: 00:10:08s. Time for last 1,000,000: 2s. Last read position: chr9:35,077,322
INFO 2026-06-08 09:38:05 MarkDuplicates Tracking 977236 as yet unmatched pairs. 45846 records in RAM.
INFO 2026-06-08 09:38:07 MarkDuplicates Read 278,000,000 records. Elapsed time: 00:10:10s. Time for last 1,000,000: 1s. Last read position: chr9:36,583,668
INFO 2026-06-08 09:38:07 MarkDuplicates Tracking 974286 as yet unmatched pairs. 42895 records in RAM.
INFO 2026-06-08 09:38:09 MarkDuplicates Read 279,000,000 records. Elapsed time: 00:10:12s. Time for last 1,000,000: 2s. Last read position: chr9:72,355,851
INFO 2026-06-08 09:38:09 MarkDuplicates Tracking 972049 as yet unmatched pairs. 40640 records in RAM.
INFO 2026-06-08 09:38:11 MarkDuplicates Read 280,000,000 records. Elapsed time: 00:10:13s. Time for last 1,000,000: 1s. Last read position: chr9:85,202,119
INFO 2026-06-08 09:38:11 MarkDuplicates Tracking 969304 as yet unmatched pairs. 37890 records in RAM.
INFO 2026-06-08 09:38:13 MarkDuplicates Read 281,000,000 records. Elapsed time: 00:10:16s. Time for last 1,000,000: 2s. Last read position: chr9:93,529,507
INFO 2026-06-08 09:38:13 MarkDuplicates Tracking 966898 as yet unmatched pairs. 35477 records in RAM.
INFO 2026-06-08 09:38:15 MarkDuplicates Read 282,000,000 records. Elapsed time: 00:10:18s. Time for last 1,000,000: 2s. Last read position: chr9:101,390,791
INFO 2026-06-08 09:38:15 MarkDuplicates Tracking 963660 as yet unmatched pairs. 32229 records in RAM.
INFO 2026-06-08 09:38:17 MarkDuplicates Read 283,000,000 records. Elapsed time: 00:10:19s. Time for last 1,000,000: 1s. Last read position: chr9:111,586,119
INFO 2026-06-08 09:38:17 MarkDuplicates Tracking 961041 as yet unmatched pairs. 29596 records in RAM.
INFO 2026-06-08 09:38:19 MarkDuplicates Read 284,000,000 records. Elapsed time: 00:10:22s. Time for last 1,000,000: 2s. Last read position: chr9:115,073,790
INFO 2026-06-08 09:38:19 MarkDuplicates Tracking 959394 as yet unmatched pairs. 27924 records in RAM.
INFO 2026-06-08 09:38:22 MarkDuplicates Read 285,000,000 records. Elapsed time: 00:10:24s. Time for last 1,000,000: 2s. Last read position: chr9:122,299,532
INFO 2026-06-08 09:38:22 MarkDuplicates Tracking 955299 as yet unmatched pairs. 23828 records in RAM.
INFO 2026-06-08 09:38:24 MarkDuplicates Read 286,000,000 records. Elapsed time: 00:10:26s. Time for last 1,000,000: 2s. Last read position: chr9:127,507,334
INFO 2026-06-08 09:38:24 MarkDuplicates Tracking 952919 as yet unmatched pairs. 21441 records in RAM.
INFO 2026-06-08 09:38:26 MarkDuplicates Read 287,000,000 records. Elapsed time: 00:10:28s. Time for last 1,000,000: 2s. Last read position: chr9:128,348,552
INFO 2026-06-08 09:38:26 MarkDuplicates Tracking 949429 as yet unmatched pairs. 17951 records in RAM.
INFO 2026-06-08 09:38:28 MarkDuplicates Read 288,000,000 records. Elapsed time: 00:10:30s. Time for last 1,000,000: 1s. Last read position: chr9:129,009,305
INFO 2026-06-08 09:38:28 MarkDuplicates Tracking 947082 as yet unmatched pairs. 15603 records in RAM.
INFO 2026-06-08 09:38:30 MarkDuplicates Read 289,000,000 records. Elapsed time: 00:10:32s. Time for last 1,000,000: 2s. Last read position: chr9:131,455,075
INFO 2026-06-08 09:38:30 MarkDuplicates Tracking 944105 as yet unmatched pairs. 12623 records in RAM.
INFO 2026-06-08 09:38:32 MarkDuplicates Read 290,000,000 records. Elapsed time: 00:10:34s. Time for last 1,000,000: 2s. Last read position: chr9:133,763,967
INFO 2026-06-08 09:38:32 MarkDuplicates Tracking 941255 as yet unmatched pairs. 9772 records in RAM.
INFO 2026-06-08 09:38:34 MarkDuplicates Read 291,000,000 records. Elapsed time: 00:10:36s. Time for last 1,000,000: 1s. Last read position: chr9:136,439,002
INFO 2026-06-08 09:38:34 MarkDuplicates Tracking 938223 as yet unmatched pairs. 6738 records in RAM.
INFO 2026-06-08 09:38:36 MarkDuplicates Read 292,000,000 records. Elapsed time: 00:10:38s. Time for last 1,000,000: 2s. Last read position: chr9:137,022,840
INFO 2026-06-08 09:38:36 MarkDuplicates Tracking 935028 as yet unmatched pairs. 3537 records in RAM.
INFO 2026-06-08 09:38:39 MarkDuplicates Read 293,000,000 records. Elapsed time: 00:10:41s. Time for last 1,000,000: 2s. Last read position: chr10:246,945
INFO 2026-06-08 09:38:39 MarkDuplicates Tracking 931631 as yet unmatched pairs. 59211 records in RAM.
INFO 2026-06-08 09:38:40 MarkDuplicates Read 294,000,000 records. Elapsed time: 00:10:43s. Time for last 1,000,000: 1s. Last read position: chr10:5,960,393
INFO 2026-06-08 09:38:40 MarkDuplicates Tracking 928904 as yet unmatched pairs. 56480 records in RAM.
INFO 2026-06-08 09:38:43 MarkDuplicates Read 295,000,000 records. Elapsed time: 00:10:45s. Time for last 1,000,000: 2s. Last read position: chr10:17,906,951
INFO 2026-06-08 09:38:43 MarkDuplicates Tracking 926055 as yet unmatched pairs. 53624 records in RAM.
INFO 2026-06-08 09:38:44 MarkDuplicates Read 296,000,000 records. Elapsed time: 00:10:47s. Time for last 1,000,000: 1s. Last read position: chr10:28,533,231
INFO 2026-06-08 09:38:44 MarkDuplicates Tracking 923594 as yet unmatched pairs. 51156 records in RAM.
INFO 2026-06-08 09:38:47 MarkDuplicates Read 297,000,000 records. Elapsed time: 00:10:49s. Time for last 1,000,000: 2s. Last read position: chr10:32,021,098
INFO 2026-06-08 09:38:47 MarkDuplicates Tracking 924837 as yet unmatched pairs. 52397 records in RAM.
INFO 2026-06-08 09:38:49 MarkDuplicates Read 298,000,000 records. Elapsed time: 00:10:51s. Time for last 1,000,000: 2s. Last read position: chr10:32,911,668
INFO 2026-06-08 09:38:49 MarkDuplicates Tracking 920568 as yet unmatched pairs. 48123 records in RAM.
INFO 2026-06-08 09:38:51 MarkDuplicates Read 299,000,000 records. Elapsed time: 00:10:53s. Time for last 1,000,000: 1s. Last read position: chr10:43,556,698
INFO 2026-06-08 09:38:51 MarkDuplicates Tracking 916024 as yet unmatched pairs. 43577 records in RAM.
INFO 2026-06-08 09:38:52 MarkDuplicates Read 300,000,000 records. Elapsed time: 00:10:55s. Time for last 1,000,000: 1s. Last read position: chr10:48,425,910
INFO 2026-06-08 09:38:52 MarkDuplicates Tracking 914464 as yet unmatched pairs. 42015 records in RAM.
INFO 2026-06-08 09:38:55 MarkDuplicates Read 301,000,000 records. Elapsed time: 00:10:57s. Time for last 1,000,000: 2s. Last read position: chr10:63,167,904
INFO 2026-06-08 09:38:55 MarkDuplicates Tracking 911727 as yet unmatched pairs. 39274 records in RAM.
INFO 2026-06-08 09:38:56 MarkDuplicates Read 302,000,000 records. Elapsed time: 00:10:59s. Time for last 1,000,000: 1s. Last read position: chr10:70,421,717
INFO 2026-06-08 09:38:56 MarkDuplicates Tracking 909750 as yet unmatched pairs. 37297 records in RAM.
INFO 2026-06-08 09:38:58 MarkDuplicates Read 303,000,000 records. Elapsed time: 00:11:01s. Time for last 1,000,000: 2s. Last read position: chr10:73,791,460
INFO 2026-06-08 09:38:58 MarkDuplicates Tracking 906531 as yet unmatched pairs. 34078 records in RAM.
INFO 2026-06-08 09:39:00 MarkDuplicates Read 304,000,000 records. Elapsed time: 00:11:03s. Time for last 1,000,000: 1s. Last read position: chr10:77,830,850
INFO 2026-06-08 09:39:00 MarkDuplicates Tracking 903873 as yet unmatched pairs. 31415 records in RAM.
INFO 2026-06-08 09:39:02 MarkDuplicates Read 305,000,000 records. Elapsed time: 00:11:05s. Time for last 1,000,000: 2s. Last read position: chr10:80,247,582
INFO 2026-06-08 09:39:02 MarkDuplicates Tracking 901239 as yet unmatched pairs. 28778 records in RAM.
INFO 2026-06-08 09:39:05 MarkDuplicates Read 306,000,000 records. Elapsed time: 00:11:07s. Time for last 1,000,000: 2s. Last read position: chr10:89,306,363
INFO 2026-06-08 09:39:05 MarkDuplicates Tracking 899042 as yet unmatched pairs. 26572 records in RAM.
INFO 2026-06-08 09:39:06 MarkDuplicates Read 307,000,000 records. Elapsed time: 00:11:09s. Time for last 1,000,000: 1s. Last read position: chr10:93,409,710
INFO 2026-06-08 09:39:06 MarkDuplicates Tracking 897943 as yet unmatched pairs. 25469 records in RAM.
INFO 2026-06-08 09:39:09 MarkDuplicates Read 308,000,000 records. Elapsed time: 00:11:11s. Time for last 1,000,000: 2s. Last read position: chr10:97,379,336
INFO 2026-06-08 09:39:09 MarkDuplicates Tracking 893955 as yet unmatched pairs. 21472 records in RAM.
INFO 2026-06-08 09:39:11 MarkDuplicates Read 309,000,000 records. Elapsed time: 00:11:13s. Time for last 1,000,000: 2s. Last read position: chr10:101,004,109
INFO 2026-06-08 09:39:11 MarkDuplicates Tracking 891155 as yet unmatched pairs. 18662 records in RAM.
INFO 2026-06-08 09:39:13 MarkDuplicates Read 310,000,000 records. Elapsed time: 00:11:15s. Time for last 1,000,000: 1s. Last read position: chr10:102,657,006
INFO 2026-06-08 09:39:13 MarkDuplicates Tracking 889272 as yet unmatched pairs. 16775 records in RAM.
INFO 2026-06-08 09:39:15 MarkDuplicates Read 311,000,000 records. Elapsed time: 00:11:17s. Time for last 1,000,000: 2s. Last read position: chr10:104,043,505
INFO 2026-06-08 09:39:15 MarkDuplicates Tracking 888207 as yet unmatched pairs. 15709 records in RAM.
INFO 2026-06-08 09:39:17 MarkDuplicates Read 312,000,000 records. Elapsed time: 00:11:19s. Time for last 1,000,000: 2s. Last read position: chr10:110,895,948
INFO 2026-06-08 09:39:17 MarkDuplicates Tracking 882555 as yet unmatched pairs. 10039 records in RAM.
INFO 2026-06-08 09:39:19 MarkDuplicates Read 313,000,000 records. Elapsed time: 00:11:21s. Time for last 1,000,000: 1s. Last read position: chr10:117,374,580
INFO 2026-06-08 09:39:19 MarkDuplicates Tracking 880719 as yet unmatched pairs. 8183 records in RAM.
INFO 2026-06-08 09:39:21 MarkDuplicates Read 314,000,000 records. Elapsed time: 00:11:23s. Time for last 1,000,000: 2s. Last read position: chr10:122,210,868
INFO 2026-06-08 09:39:21 MarkDuplicates Tracking 877286 as yet unmatched pairs. 4743 records in RAM.
INFO 2026-06-08 09:39:23 MarkDuplicates Read 315,000,000 records. Elapsed time: 00:11:25s. Time for last 1,000,000: 1s. Last read position: chr10:129,766,875
INFO 2026-06-08 09:39:23 MarkDuplicates Tracking 875257 as yet unmatched pairs. 2712 records in RAM.
INFO 2026-06-08 09:39:26 MarkDuplicates Read 316,000,000 records. Elapsed time: 00:11:28s. Time for last 1,000,000: 3s. Last read position: chr11:314,262
INFO 2026-06-08 09:39:26 MarkDuplicates Tracking 873142 as yet unmatched pairs. 107558 records in RAM.
INFO 2026-06-08 09:39:28 MarkDuplicates Read 317,000,000 records. Elapsed time: 00:11:31s. Time for last 1,000,000: 2s. Last read position: chr11:607,931
INFO 2026-06-08 09:39:28 MarkDuplicates Tracking 868416 as yet unmatched pairs. 102830 records in RAM.
INFO 2026-06-08 09:39:30 MarkDuplicates Read 318,000,000 records. Elapsed time: 00:11:33s. Time for last 1,000,000: 1s. Last read position: chr11:840,360
INFO 2026-06-08 09:39:30 MarkDuplicates Tracking 865689 as yet unmatched pairs. 100102 records in RAM.
INFO 2026-06-08 09:39:32 MarkDuplicates Read 319,000,000 records. Elapsed time: 00:11:35s. Time for last 1,000,000: 1s. Last read position: chr11:1,190,181
INFO 2026-06-08 09:39:32 MarkDuplicates Tracking 863542 as yet unmatched pairs. 97950 records in RAM.
INFO 2026-06-08 09:39:34 MarkDuplicates Read 320,000,000 records. Elapsed time: 00:11:36s. Time for last 1,000,000: 1s. Last read position: chr11:1,245,322
INFO 2026-06-08 09:39:34 MarkDuplicates Tracking 861210 as yet unmatched pairs. 95607 records in RAM.
INFO 2026-06-08 09:39:36 MarkDuplicates Read 321,000,000 records. Elapsed time: 00:11:38s. Time for last 1,000,000: 1s. Last read position: chr11:1,754,047
INFO 2026-06-08 09:39:36 MarkDuplicates Tracking 860664 as yet unmatched pairs. 95055 records in RAM.
INFO 2026-06-08 09:39:38 MarkDuplicates Read 322,000,000 records. Elapsed time: 00:11:40s. Time for last 1,000,000: 2s. Last read position: chr11:3,719,537
INFO 2026-06-08 09:39:38 MarkDuplicates Tracking 855651 as yet unmatched pairs. 90035 records in RAM.
INFO 2026-06-08 09:39:40 MarkDuplicates Read 323,000,000 records. Elapsed time: 00:11:42s. Time for last 1,000,000: 1s. Last read position: chr11:8,625,079
INFO 2026-06-08 09:39:40 MarkDuplicates Tracking 852388 as yet unmatched pairs. 86771 records in RAM.
INFO 2026-06-08 09:39:42 MarkDuplicates Read 324,000,000 records. Elapsed time: 00:11:44s. Time for last 1,000,000: 2s. Last read position: chr11:10,802,303
INFO 2026-06-08 09:39:42 MarkDuplicates Tracking 850659 as yet unmatched pairs. 85039 records in RAM.
INFO 2026-06-08 09:39:44 MarkDuplicates Read 325,000,000 records. Elapsed time: 00:11:46s. Time for last 1,000,000: 1s. Last read position: chr11:17,074,425
INFO 2026-06-08 09:39:44 MarkDuplicates Tracking 848510 as yet unmatched pairs. 82890 records in RAM.
INFO 2026-06-08 09:39:46 MarkDuplicates Read 326,000,000 records. Elapsed time: 00:11:49s. Time for last 1,000,000: 2s. Last read position: chr11:32,594,979
INFO 2026-06-08 09:39:46 MarkDuplicates Tracking 844697 as yet unmatched pairs. 79074 records in RAM.
INFO 2026-06-08 09:39:49 MarkDuplicates Read 327,000,000 records. Elapsed time: 00:11:51s. Time for last 1,000,000: 2s. Last read position: chr11:36,462,666
INFO 2026-06-08 09:39:49 MarkDuplicates Tracking 841579 as yet unmatched pairs. 75945 records in RAM.
INFO 2026-06-08 09:39:50 MarkDuplicates Read 328,000,000 records. Elapsed time: 00:11:53s. Time for last 1,000,000: 1s. Last read position: chr11:46,397,922
INFO 2026-06-08 09:39:50 MarkDuplicates Tracking 838708 as yet unmatched pairs. 73074 records in RAM.
INFO 2026-06-08 09:39:53 MarkDuplicates Read 329,000,000 records. Elapsed time: 00:11:55s. Time for last 1,000,000: 2s. Last read position: chr11:57,128,758
INFO 2026-06-08 09:39:53 MarkDuplicates Tracking 835951 as yet unmatched pairs. 70299 records in RAM.
INFO 2026-06-08 09:39:55 MarkDuplicates Read 330,000,000 records. Elapsed time: 00:11:57s. Time for last 1,000,000: 2s. Last read position: chr11:57,816,322
INFO 2026-06-08 09:39:55 MarkDuplicates Tracking 834124 as yet unmatched pairs. 68466 records in RAM.
INFO 2026-06-08 09:39:57 MarkDuplicates Read 331,000,000 records. Elapsed time: 00:11:59s. Time for last 1,000,000: 1s. Last read position: chr11:61,771,577
INFO 2026-06-08 09:39:57 MarkDuplicates Tracking 831208 as yet unmatched pairs. 65542 records in RAM.
INFO 2026-06-08 09:39:59 MarkDuplicates Read 332,000,000 records. Elapsed time: 00:12:01s. Time for last 1,000,000: 2s. Last read position: chr11:62,519,512
INFO 2026-06-08 09:39:59 MarkDuplicates Tracking 828642 as yet unmatched pairs. 62976 records in RAM.
INFO 2026-06-08 09:40:00 MarkDuplicates Read 333,000,000 records. Elapsed time: 00:12:03s. Time for last 1,000,000: 1s. Last read position: chr11:62,528,699
INFO 2026-06-08 09:40:00 MarkDuplicates Tracking 826864 as yet unmatched pairs. 61197 records in RAM.
INFO 2026-06-08 09:40:03 MarkDuplicates Read 334,000,000 records. Elapsed time: 00:12:05s. Time for last 1,000,000: 2s. Last read position: chr11:62,611,448
INFO 2026-06-08 09:40:03 MarkDuplicates Tracking 823489 as yet unmatched pairs. 57818 records in RAM.
INFO 2026-06-08 09:40:05 MarkDuplicates Read 335,000,000 records. Elapsed time: 00:12:07s. Time for last 1,000,000: 2s. Last read position: chr11:63,997,045
INFO 2026-06-08 09:40:05 MarkDuplicates Tracking 820386 as yet unmatched pairs. 54704 records in RAM.
INFO 2026-06-08 09:40:07 MarkDuplicates Read 336,000,000 records. Elapsed time: 00:12:09s. Time for last 1,000,000: 1s. Last read position: chr11:64,776,415
INFO 2026-06-08 09:40:07 MarkDuplicates Tracking 817302 as yet unmatched pairs. 51618 records in RAM.
INFO 2026-06-08 09:40:09 MarkDuplicates Read 337,000,000 records. Elapsed time: 00:12:11s. Time for last 1,000,000: 2s. Last read position: chr11:65,208,220
INFO 2026-06-08 09:40:09 MarkDuplicates Tracking 815431 as yet unmatched pairs. 49741 records in RAM.
INFO 2026-06-08 09:40:11 MarkDuplicates Read 338,000,000 records. Elapsed time: 00:12:13s. Time for last 1,000,000: 1s. Last read position: chr11:65,607,696
INFO 2026-06-08 09:40:11 MarkDuplicates Tracking 810696 as yet unmatched pairs. 44990 records in RAM.
INFO 2026-06-08 09:40:13 MarkDuplicates Read 339,000,000 records. Elapsed time: 00:12:15s. Time for last 1,000,000: 2s. Last read position: chr11:65,886,380
INFO 2026-06-08 09:40:13 MarkDuplicates Tracking 807465 as yet unmatched pairs. 41758 records in RAM.
INFO 2026-06-08 09:40:15 MarkDuplicates Read 340,000,000 records. Elapsed time: 00:12:17s. Time for last 1,000,000: 2s. Last read position: chr11:66,688,723
INFO 2026-06-08 09:40:15 MarkDuplicates Tracking 804329 as yet unmatched pairs. 38617 records in RAM.
INFO 2026-06-08 09:40:17 MarkDuplicates Read 341,000,000 records. Elapsed time: 00:12:19s. Time for last 1,000,000: 1s. Last read position: chr11:67,434,007
INFO 2026-06-08 09:40:17 MarkDuplicates Tracking 801340 as yet unmatched pairs. 35618 records in RAM.
INFO 2026-06-08 09:40:19 MarkDuplicates Read 342,000,000 records. Elapsed time: 00:12:21s. Time for last 1,000,000: 2s. Last read position: chr11:68,357,690
INFO 2026-06-08 09:40:19 MarkDuplicates Tracking 798265 as yet unmatched pairs. 32542 records in RAM.
INFO 2026-06-08 09:40:21 MarkDuplicates Read 343,000,000 records. Elapsed time: 00:12:23s. Time for last 1,000,000: 1s. Last read position: chr11:69,648,068
INFO 2026-06-08 09:40:21 MarkDuplicates Tracking 800369 as yet unmatched pairs. 34646 records in RAM.
INFO 2026-06-08 09:40:23 MarkDuplicates Read 344,000,000 records. Elapsed time: 00:12:25s. Time for last 1,000,000: 2s. Last read position: chr11:72,015,152
INFO 2026-06-08 09:40:23 MarkDuplicates Tracking 792155 as yet unmatched pairs. 26432 records in RAM.
INFO 2026-06-08 09:40:25 MarkDuplicates Read 345,000,000 records. Elapsed time: 00:12:27s. Time for last 1,000,000: 2s. Last read position: chr11:74,713,397
INFO 2026-06-08 09:40:25 MarkDuplicates Tracking 789133 as yet unmatched pairs. 23393 records in RAM.
INFO 2026-06-08 09:40:27 MarkDuplicates Read 346,000,000 records. Elapsed time: 00:12:29s. Time for last 1,000,000: 1s. Last read position: chr11:78,113,964
INFO 2026-06-08 09:40:27 MarkDuplicates Tracking 786490 as yet unmatched pairs. 20740 records in RAM.
INFO 2026-06-08 09:40:29 MarkDuplicates Read 347,000,000 records. Elapsed time: 00:12:31s. Time for last 1,000,000: 2s. Last read position: chr11:95,230,797
INFO 2026-06-08 09:40:29 MarkDuplicates Tracking 783757 as yet unmatched pairs. 18007 records in RAM.
INFO 2026-06-08 09:40:31 MarkDuplicates Read 348,000,000 records. Elapsed time: 00:12:33s. Time for last 1,000,000: 1s. Last read position: chr11:102,865,811
INFO 2026-06-08 09:40:31 MarkDuplicates Tracking 781134 as yet unmatched pairs. 15384 records in RAM.
INFO 2026-06-08 09:40:33 MarkDuplicates Read 349,000,000 records. Elapsed time: 00:12:35s. Time for last 1,000,000: 2s. Last read position: chr11:117,204,220
INFO 2026-06-08 09:40:33 MarkDuplicates Tracking 778834 as yet unmatched pairs. 13083 records in RAM.
INFO 2026-06-08 09:40:35 MarkDuplicates Read 350,000,000 records. Elapsed time: 00:12:37s. Time for last 1,000,000: 2s. Last read position: chr11:118,779,691
INFO 2026-06-08 09:40:35 MarkDuplicates Tracking 776123 as yet unmatched pairs. 10371 records in RAM.
INFO 2026-06-08 09:40:37 MarkDuplicates Read 351,000,000 records. Elapsed time: 00:12:39s. Time for last 1,000,000: 1s. Last read position: chr11:119,310,348
INFO 2026-06-08 09:40:37 MarkDuplicates Tracking 773235 as yet unmatched pairs. 7471 records in RAM.
INFO 2026-06-08 09:40:39 MarkDuplicates Read 352,000,000 records. Elapsed time: 00:12:41s. Time for last 1,000,000: 2s. Last read position: chr11:123,060,749
INFO 2026-06-08 09:40:39 MarkDuplicates Tracking 772248 as yet unmatched pairs. 6467 records in RAM.
INFO 2026-06-08 09:40:41 MarkDuplicates Read 353,000,000 records. Elapsed time: 00:12:43s. Time for last 1,000,000: 2s. Last read position: chr11:130,122,346
INFO 2026-06-08 09:40:41 MarkDuplicates Tracking 767862 as yet unmatched pairs. 2080 records in RAM.
INFO 2026-06-08 09:40:44 MarkDuplicates Read 354,000,000 records. Elapsed time: 00:12:46s. Time for last 1,000,000: 2s. Last read position: chr12:859,310
INFO 2026-06-08 09:40:44 MarkDuplicates Tracking 765078 as yet unmatched pairs. 96936 records in RAM.
INFO 2026-06-08 09:40:46 MarkDuplicates Read 355,000,000 records. Elapsed time: 00:12:48s. Time for last 1,000,000: 2s. Last read position: chr12:6,225,467
INFO 2026-06-08 09:40:46 MarkDuplicates Tracking 763452 as yet unmatched pairs. 95306 records in RAM.
INFO 2026-06-08 09:40:48 MarkDuplicates Read 356,000,000 records. Elapsed time: 00:12:50s. Time for last 1,000,000: 1s. Last read position: chr12:6,582,878
INFO 2026-06-08 09:40:48 MarkDuplicates Tracking 759928 as yet unmatched pairs. 91776 records in RAM.
INFO 2026-06-08 09:40:50 MarkDuplicates Read 357,000,000 records. Elapsed time: 00:12:52s. Time for last 1,000,000: 2s. Last read position: chr12:6,978,284
INFO 2026-06-08 09:40:50 MarkDuplicates Tracking 756525 as yet unmatched pairs. 88371 records in RAM.
INFO 2026-06-08 09:40:52 MarkDuplicates Read 358,000,000 records. Elapsed time: 00:12:54s. Time for last 1,000,000: 2s. Last read position: chr12:10,709,962
INFO 2026-06-08 09:40:52 MarkDuplicates Tracking 754647 as yet unmatched pairs. 86492 records in RAM.
INFO 2026-06-08 09:40:54 MarkDuplicates Read 359,000,000 records. Elapsed time: 00:12:56s. Time for last 1,000,000: 1s. Last read position: chr12:13,055,817
INFO 2026-06-08 09:40:54 MarkDuplicates Tracking 751122 as yet unmatched pairs. 82962 records in RAM.
INFO 2026-06-08 09:40:56 MarkDuplicates Read 360,000,000 records. Elapsed time: 00:12:58s. Time for last 1,000,000: 2s. Last read position: chr12:22,493,311
INFO 2026-06-08 09:40:56 MarkDuplicates Tracking 748751 as yet unmatched pairs. 80578 records in RAM.
INFO 2026-06-08 09:40:58 MarkDuplicates Read 361,000,000 records. Elapsed time: 00:13:00s. Time for last 1,000,000: 1s. Last read position: chr12:32,731,356
INFO 2026-06-08 09:40:58 MarkDuplicates Tracking 746065 as yet unmatched pairs. 77889 records in RAM.
INFO 2026-06-08 09:41:00 MarkDuplicates Read 362,000,000 records. Elapsed time: 00:13:03s. Time for last 1,000,000: 2s. Last read position: chr12:47,785,788
INFO 2026-06-08 09:41:00 MarkDuplicates Tracking 743785 as yet unmatched pairs. 75593 records in RAM.
INFO 2026-06-08 09:41:03 MarkDuplicates Read 363,000,000 records. Elapsed time: 00:13:05s. Time for last 1,000,000: 2s. Last read position: chr12:49,043,988
INFO 2026-06-08 09:41:03 MarkDuplicates Tracking 740954 as yet unmatched pairs. 72761 records in RAM.
INFO 2026-06-08 09:41:05 MarkDuplicates Read 364,000,000 records. Elapsed time: 00:13:07s. Time for last 1,000,000: 1s. Last read position: chr12:49,272,479
INFO 2026-06-08 09:41:05 MarkDuplicates Tracking 743013 as yet unmatched pairs. 74820 records in RAM.
INFO 2026-06-08 09:41:07 MarkDuplicates Read 365,000,000 records. Elapsed time: 00:13:09s. Time for last 1,000,000: 2s. Last read position: chr12:50,814,075
INFO 2026-06-08 09:41:07 MarkDuplicates Tracking 736814 as yet unmatched pairs. 68608 records in RAM.
INFO 2026-06-08 09:41:09 MarkDuplicates Read 366,000,000 records. Elapsed time: 00:13:11s. Time for last 1,000,000: 2s. Last read position: chr12:52,897,531
INFO 2026-06-08 09:41:09 MarkDuplicates Tracking 739557 as yet unmatched pairs. 71350 records in RAM.
INFO 2026-06-08 09:41:11 MarkDuplicates Read 367,000,000 records. Elapsed time: 00:13:13s. Time for last 1,000,000: 2s. Last read position: chr12:52,949,276
INFO 2026-06-08 09:41:11 MarkDuplicates Tracking 736444 as yet unmatched pairs. 68236 records in RAM.
INFO 2026-06-08 09:41:13 MarkDuplicates Read 368,000,000 records. Elapsed time: 00:13:16s. Time for last 1,000,000: 2s. Last read position: chr12:53,286,046
INFO 2026-06-08 09:41:13 MarkDuplicates Tracking 728029 as yet unmatched pairs. 59821 records in RAM.
INFO 2026-06-08 09:41:15 MarkDuplicates Read 369,000,000 records. Elapsed time: 00:13:18s. Time for last 1,000,000: 2s. Last read position: chr12:54,181,601
INFO 2026-06-08 09:41:15 MarkDuplicates Tracking 725826 as yet unmatched pairs. 57618 records in RAM.
INFO 2026-06-08 09:41:18 MarkDuplicates Read 370,000,000 records. Elapsed time: 00:13:20s. Time for last 1,000,000: 2s. Last read position: chr12:55,760,615
INFO 2026-06-08 09:41:18 MarkDuplicates Tracking 723647 as yet unmatched pairs. 55439 records in RAM.
INFO 2026-06-08 09:41:20 MarkDuplicates Read 371,000,000 records. Elapsed time: 00:13:22s. Time for last 1,000,000: 1s. Last read position: chr12:56,163,773
INFO 2026-06-08 09:41:20 MarkDuplicates Tracking 721250 as yet unmatched pairs. 53037 records in RAM.
INFO 2026-06-08 09:41:22 MarkDuplicates Read 372,000,000 records. Elapsed time: 00:13:24s. Time for last 1,000,000: 2s. Last read position: chr12:56,664,356
INFO 2026-06-08 09:41:22 MarkDuplicates Tracking 718967 as yet unmatched pairs. 50749 records in RAM.
INFO 2026-06-08 09:41:24 MarkDuplicates Read 373,000,000 records. Elapsed time: 00:13:26s. Time for last 1,000,000: 2s. Last read position: chr12:57,102,369
INFO 2026-06-08 09:41:24 MarkDuplicates Tracking 717136 as yet unmatched pairs. 48915 records in RAM.
INFO 2026-06-08 09:41:26 MarkDuplicates Read 374,000,000 records. Elapsed time: 00:13:28s. Time for last 1,000,000: 1s. Last read position: chr12:57,255,052
INFO 2026-06-08 09:41:26 MarkDuplicates Tracking 712903 as yet unmatched pairs. 44681 records in RAM.
INFO 2026-06-08 09:41:28 MarkDuplicates Read 375,000,000 records. Elapsed time: 00:13:30s. Time for last 1,000,000: 2s. Last read position: chr12:62,525,126
INFO 2026-06-08 09:41:28 MarkDuplicates Tracking 710126 as yet unmatched pairs. 41893 records in RAM.
INFO 2026-06-08 09:41:30 MarkDuplicates Read 376,000,000 records. Elapsed time: 00:13:32s. Time for last 1,000,000: 1s. Last read position: chr12:69,348,428
INFO 2026-06-08 09:41:30 MarkDuplicates Tracking 708094 as yet unmatched pairs. 39857 records in RAM.
INFO 2026-06-08 09:41:32 MarkDuplicates Read 377,000,000 records. Elapsed time: 00:13:34s. Time for last 1,000,000: 2s. Last read position: chr12:76,030,931
INFO 2026-06-08 09:41:32 MarkDuplicates Tracking 707010 as yet unmatched pairs. 38769 records in RAM.
INFO 2026-06-08 09:41:34 MarkDuplicates Read 378,000,000 records. Elapsed time: 00:13:36s. Time for last 1,000,000: 2s. Last read position: chr12:91,164,664
INFO 2026-06-08 09:41:34 MarkDuplicates Tracking 702806 as yet unmatched pairs. 34558 records in RAM.
INFO 2026-06-08 09:41:36 MarkDuplicates Read 379,000,000 records. Elapsed time: 00:13:38s. Time for last 1,000,000: 1s. Last read position: chr12:98,598,000
INFO 2026-06-08 09:41:36 MarkDuplicates Tracking 700263 as yet unmatched pairs. 32005 records in RAM.
INFO 2026-06-08 09:41:39 MarkDuplicates Read 380,000,000 records. Elapsed time: 00:13:41s. Time for last 1,000,000: 2s. Last read position: chr12:105,199,375
INFO 2026-06-08 09:41:39 MarkDuplicates Tracking 697274 as yet unmatched pairs. 29008 records in RAM.
INFO 2026-06-08 09:41:41 MarkDuplicates Read 381,000,000 records. Elapsed time: 00:13:44s. Time for last 1,000,000: 2s. Last read position: chr12:110,342,289
INFO 2026-06-08 09:41:41 MarkDuplicates Tracking 694554 as yet unmatched pairs. 26288 records in RAM.
INFO 2026-06-08 09:41:44 MarkDuplicates Read 382,000,000 records. Elapsed time: 00:13:46s. Time for last 1,000,000: 2s. Last read position: chr12:112,308,803
INFO 2026-06-08 09:41:44 MarkDuplicates Tracking 691858 as yet unmatched pairs. 23586 records in RAM.
INFO 2026-06-08 09:41:46 MarkDuplicates Read 383,000,000 records. Elapsed time: 00:13:48s. Time for last 1,000,000: 2s. Last read position: chr12:113,320,901
INFO 2026-06-08 09:41:46 MarkDuplicates Tracking 689014 as yet unmatched pairs. 20742 records in RAM.
INFO 2026-06-08 09:41:48 MarkDuplicates Read 384,000,000 records. Elapsed time: 00:13:50s. Time for last 1,000,000: 1s. Last read position: chr12:120,142,541
INFO 2026-06-08 09:41:48 MarkDuplicates Tracking 686157 as yet unmatched pairs. 17877 records in RAM.
INFO 2026-06-08 09:41:50 MarkDuplicates Read 385,000,000 records. Elapsed time: 00:13:52s. Time for last 1,000,000: 2s. Last read position: chr12:120,557,381
INFO 2026-06-08 09:41:50 MarkDuplicates Tracking 683377 as yet unmatched pairs. 15095 records in RAM.
INFO 2026-06-08 09:41:52 MarkDuplicates Read 386,000,000 records. Elapsed time: 00:13:54s. Time for last 1,000,000: 1s. Last read position: chr12:122,133,684
INFO 2026-06-08 09:41:52 MarkDuplicates Tracking 681745 as yet unmatched pairs. 13454 records in RAM.
INFO 2026-06-08 09:41:54 MarkDuplicates Read 387,000,000 records. Elapsed time: 00:13:56s. Time for last 1,000,000: 2s. Last read position: chr12:123,586,758
INFO 2026-06-08 09:41:54 MarkDuplicates Tracking 678412 as yet unmatched pairs. 10115 records in RAM.
INFO 2026-06-08 09:41:56 MarkDuplicates Read 388,000,000 records. Elapsed time: 00:13:58s. Time for last 1,000,000: 2s. Last read position: chr12:124,363,757
INFO 2026-06-08 09:41:56 MarkDuplicates Tracking 675033 as yet unmatched pairs. 6731 records in RAM.
INFO 2026-06-08 09:41:58 MarkDuplicates Read 389,000,000 records. Elapsed time: 00:14:00s. Time for last 1,000,000: 1s. Last read position: chr12:131,960,901
INFO 2026-06-08 09:41:58 MarkDuplicates Tracking 672059 as yet unmatched pairs. 3749 records in RAM.
INFO 2026-06-08 09:42:00 MarkDuplicates Read 390,000,000 records. Elapsed time: 00:14:02s. Time for last 1,000,000: 2s. Last read position: chr12:132,808,278
INFO 2026-06-08 09:42:00 MarkDuplicates Tracking 668845 as yet unmatched pairs. 534 records in RAM.
INFO 2026-06-08 09:42:02 MarkDuplicates Read 391,000,000 records. Elapsed time: 00:14:04s. Time for last 1,000,000: 2s. Last read position: chr13:20,988,358
INFO 2026-06-08 09:42:02 MarkDuplicates Tracking 666273 as yet unmatched pairs. 28391 records in RAM.
INFO 2026-06-08 09:42:04 MarkDuplicates Read 392,000,000 records. Elapsed time: 00:14:06s. Time for last 1,000,000: 2s. Last read position: chr13:27,105,732
INFO 2026-06-08 09:42:04 MarkDuplicates Tracking 663842 as yet unmatched pairs. 25949 records in RAM.
INFO 2026-06-08 09:42:06 MarkDuplicates Read 393,000,000 records. Elapsed time: 00:14:08s. Time for last 1,000,000: 1s. Last read position: chr13:32,688,503
INFO 2026-06-08 09:42:06 MarkDuplicates Tracking 661516 as yet unmatched pairs. 23622 records in RAM.
INFO 2026-06-08 09:42:08 MarkDuplicates Read 394,000,000 records. Elapsed time: 00:14:10s. Time for last 1,000,000: 2s. Last read position: chr13:42,299,753
INFO 2026-06-08 09:42:08 MarkDuplicates Tracking 659356 as yet unmatched pairs. 21455 records in RAM.
INFO 2026-06-08 09:42:10 MarkDuplicates Read 395,000,000 records. Elapsed time: 00:14:12s. Time for last 1,000,000: 2s. Last read position: chr13:45,975,780
INFO 2026-06-08 09:42:10 MarkDuplicates Tracking 656157 as yet unmatched pairs. 18254 records in RAM.
INFO 2026-06-08 09:42:12 MarkDuplicates Read 396,000,000 records. Elapsed time: 00:14:14s. Time for last 1,000,000: 1s. Last read position: chr13:52,658,407
INFO 2026-06-08 09:42:12 MarkDuplicates Tracking 653891 as yet unmatched pairs. 15986 records in RAM.
INFO 2026-06-08 09:42:14 MarkDuplicates Read 397,000,000 records. Elapsed time: 00:14:16s. Time for last 1,000,000: 2s. Last read position: chr13:75,838,174
INFO 2026-06-08 09:42:14 MarkDuplicates Tracking 651049 as yet unmatched pairs. 13134 records in RAM.
INFO 2026-06-08 09:42:16 MarkDuplicates Read 398,000,000 records. Elapsed time: 00:14:18s. Time for last 1,000,000: 1s. Last read position: chr13:95,247,727
INFO 2026-06-08 09:42:16 MarkDuplicates Tracking 648616 as yet unmatched pairs. 10696 records in RAM.
INFO 2026-06-08 09:42:18 MarkDuplicates Read 399,000,000 records. Elapsed time: 00:14:20s. Time for last 1,000,000: 2s. Last read position: chr13:99,554,371
INFO 2026-06-08 09:42:18 MarkDuplicates Tracking 646360 as yet unmatched pairs. 8432 records in RAM.
INFO 2026-06-08 09:42:20 MarkDuplicates Read 400,000,000 records. Elapsed time: 00:14:22s. Time for last 1,000,000: 1s. Last read position: chr13:110,424,952
INFO 2026-06-08 09:42:20 MarkDuplicates Tracking 642864 as yet unmatched pairs. 4933 records in RAM.
INFO 2026-06-08 09:42:22 MarkDuplicates Read 401,000,000 records. Elapsed time: 00:14:24s. Time for last 1,000,000: 2s. Last read position: chr13:113,324,486
INFO 2026-06-08 09:42:22 MarkDuplicates Tracking 639844 as yet unmatched pairs. 1905 records in RAM.
INFO 2026-06-08 09:42:25 MarkDuplicates Read 402,000,000 records. Elapsed time: 00:14:27s. Time for last 1,000,000: 2s. Last read position: chr14:21,091,055
INFO 2026-06-08 09:42:25 MarkDuplicates Tracking 636612 as yet unmatched pairs. 56120 records in RAM.
INFO 2026-06-08 09:42:27 MarkDuplicates Read 403,000,000 records. Elapsed time: 00:14:29s. Time for last 1,000,000: 1s. Last read position: chr14:22,920,947
INFO 2026-06-08 09:42:27 MarkDuplicates Tracking 634017 as yet unmatched pairs. 53513 records in RAM.
INFO 2026-06-08 09:42:29 MarkDuplicates Read 404,000,000 records. Elapsed time: 00:14:31s. Time for last 1,000,000: 2s. Last read position: chr14:24,179,798
INFO 2026-06-08 09:42:29 MarkDuplicates Tracking 630985 as yet unmatched pairs. 50479 records in RAM.
INFO 2026-06-08 09:42:31 MarkDuplicates Read 405,000,000 records. Elapsed time: 00:14:33s. Time for last 1,000,000: 1s. Last read position: chr14:32,092,348
INFO 2026-06-08 09:42:31 MarkDuplicates Tracking 629240 as yet unmatched pairs. 48733 records in RAM.
INFO 2026-06-08 09:42:33 MarkDuplicates Read 406,000,000 records. Elapsed time: 00:14:35s. Time for last 1,000,000: 2s. Last read position: chr14:49,585,969
INFO 2026-06-08 09:42:33 MarkDuplicates Tracking 627146 as yet unmatched pairs. 46639 records in RAM.
INFO 2026-06-08 09:42:35 MarkDuplicates Read 407,000,000 records. Elapsed time: 00:14:37s. Time for last 1,000,000: 2s. Last read position: chr14:53,950,001
INFO 2026-06-08 09:42:35 MarkDuplicates Tracking 624651 as yet unmatched pairs. 44122 records in RAM.
INFO 2026-06-08 09:42:37 MarkDuplicates Read 408,000,000 records. Elapsed time: 00:14:39s. Time for last 1,000,000: 1s. Last read position: chr14:60,108,033
INFO 2026-06-08 09:42:37 MarkDuplicates Tracking 620765 as yet unmatched pairs. 40235 records in RAM.
INFO 2026-06-08 09:42:39 MarkDuplicates Read 409,000,000 records. Elapsed time: 00:14:41s. Time for last 1,000,000: 2s. Last read position: chr14:64,741,358
INFO 2026-06-08 09:42:39 MarkDuplicates Tracking 618562 as yet unmatched pairs. 38030 records in RAM.
INFO 2026-06-08 09:42:41 MarkDuplicates Read 410,000,000 records. Elapsed time: 00:14:43s. Time for last 1,000,000: 1s. Last read position: chr14:68,910,030
INFO 2026-06-08 09:42:41 MarkDuplicates Tracking 616189 as yet unmatched pairs. 35648 records in RAM.
INFO 2026-06-08 09:42:43 MarkDuplicates Read 411,000,000 records. Elapsed time: 00:14:45s. Time for last 1,000,000: 2s. Last read position: chr14:73,718,925
INFO 2026-06-08 09:42:43 MarkDuplicates Tracking 612523 as yet unmatched pairs. 31970 records in RAM.
INFO 2026-06-08 09:42:44 MarkDuplicates Read 412,000,000 records. Elapsed time: 00:14:47s. Time for last 1,000,000: 1s. Last read position: chr14:76,779,524
INFO 2026-06-08 09:42:44 MarkDuplicates Tracking 609835 as yet unmatched pairs. 29279 records in RAM.
INFO 2026-06-08 09:42:47 MarkDuplicates Read 413,000,000 records. Elapsed time: 00:14:49s. Time for last 1,000,000: 2s. Last read position: chr14:92,652,278
INFO 2026-06-08 09:42:47 MarkDuplicates Tracking 607271 as yet unmatched pairs. 26713 records in RAM.
INFO 2026-06-08 09:42:49 MarkDuplicates Read 414,000,000 records. Elapsed time: 00:14:51s. Time for last 1,000,000: 2s. Last read position: chr14:99,500,812
INFO 2026-06-08 09:42:49 MarkDuplicates Tracking 604713 as yet unmatched pairs. 24143 records in RAM.
INFO 2026-06-08 09:42:51 MarkDuplicates Read 415,000,000 records. Elapsed time: 00:14:53s. Time for last 1,000,000: 1s. Last read position: chr14:102,042,271
INFO 2026-06-08 09:42:51 MarkDuplicates Tracking 601658 as yet unmatched pairs. 21086 records in RAM.
INFO 2026-06-08 09:42:53 MarkDuplicates Read 416,000,000 records. Elapsed time: 00:14:55s. Time for last 1,000,000: 2s. Last read position: chr14:103,521,285
INFO 2026-06-08 09:42:53 MarkDuplicates Tracking 598553 as yet unmatched pairs. 17975 records in RAM.
INFO 2026-06-08 09:42:55 MarkDuplicates Read 417,000,000 records. Elapsed time: 00:14:57s. Time for last 1,000,000: 1s. Last read position: chr14:104,886,369
INFO 2026-06-08 09:42:55 MarkDuplicates Tracking 595912 as yet unmatched pairs. 15332 records in RAM.
INFO 2026-06-08 09:42:57 MarkDuplicates Read 418,000,000 records. Elapsed time: 00:14:59s. Time for last 1,000,000: 2s. Last read position: chr14:104,942,907
INFO 2026-06-08 09:42:57 MarkDuplicates Tracking 597546 as yet unmatched pairs. 16964 records in RAM.
INFO 2026-06-08 09:42:58 MarkDuplicates Read 419,000,000 records. Elapsed time: 00:15:01s. Time for last 1,000,000: 1s. Last read position: chr14:104,946,525
INFO 2026-06-08 09:42:58 MarkDuplicates Tracking 598607 as yet unmatched pairs. 18023 records in RAM.
INFO 2026-06-08 09:43:00 MarkDuplicates Read 420,000,000 records. Elapsed time: 00:15:03s. Time for last 1,000,000: 1s. Last read position: chr14:104,950,460
INFO 2026-06-08 09:43:00 MarkDuplicates Tracking 594363 as yet unmatched pairs. 13779 records in RAM.
INFO 2026-06-08 09:43:02 MarkDuplicates Read 421,000,000 records. Elapsed time: 00:15:05s. Time for last 1,000,000: 2s. Last read position: chr14:105,587,132
INFO 2026-06-08 09:43:02 MarkDuplicates Tracking 585856 as yet unmatched pairs. 5272 records in RAM.
INFO 2026-06-08 09:43:04 MarkDuplicates Read 422,000,000 records. Elapsed time: 00:15:06s. Time for last 1,000,000: 1s. Last read position: chr14:105,741,444
INFO 2026-06-08 09:43:04 MarkDuplicates Tracking 586317 as yet unmatched pairs. 5733 records in RAM.
INFO 2026-06-08 09:43:06 MarkDuplicates Read 423,000,000 records. Elapsed time: 00:15:08s. Time for last 1,000,000: 2s. Last read position: chr14:105,742,344
INFO 2026-06-08 09:43:06 MarkDuplicates Tracking 587480 as yet unmatched pairs. 6896 records in RAM.
INFO 2026-06-08 09:43:08 MarkDuplicates Read 424,000,000 records. Elapsed time: 00:15:10s. Time for last 1,000,000: 2s. Last read position: chr15:22,916,618
INFO 2026-06-08 09:43:08 MarkDuplicates Tracking 580330 as yet unmatched pairs. 53152 records in RAM.
INFO 2026-06-08 09:43:10 MarkDuplicates Read 425,000,000 records. Elapsed time: 00:15:13s. Time for last 1,000,000: 2s. Last read position: chr15:32,597,736
INFO 2026-06-08 09:43:10 MarkDuplicates Tracking 577686 as yet unmatched pairs. 50507 records in RAM.
INFO 2026-06-08 09:43:12 MarkDuplicates Read 426,000,000 records. Elapsed time: 00:15:14s. Time for last 1,000,000: 1s. Last read position: chr15:34,364,027
INFO 2026-06-08 09:43:12 MarkDuplicates Tracking 576111 as yet unmatched pairs. 48931 records in RAM.
INFO 2026-06-08 09:43:14 MarkDuplicates Read 427,000,000 records. Elapsed time: 00:15:16s. Time for last 1,000,000: 2s. Last read position: chr15:40,297,584
INFO 2026-06-08 09:43:14 MarkDuplicates Tracking 572744 as yet unmatched pairs. 45557 records in RAM.
INFO 2026-06-08 09:43:16 MarkDuplicates Read 428,000,000 records. Elapsed time: 00:15:18s. Time for last 1,000,000: 1s. Last read position: chr15:41,710,750
INFO 2026-06-08 09:43:16 MarkDuplicates Tracking 570083 as yet unmatched pairs. 42895 records in RAM.
INFO 2026-06-08 09:43:18 MarkDuplicates Read 429,000,000 records. Elapsed time: 00:15:21s. Time for last 1,000,000: 2s. Last read position: chr15:43,524,419
INFO 2026-06-08 09:43:18 MarkDuplicates Tracking 567319 as yet unmatched pairs. 40130 records in RAM.
INFO 2026-06-08 09:43:20 MarkDuplicates Read 430,000,000 records. Elapsed time: 00:15:23s. Time for last 1,000,000: 2s. Last read position: chr15:44,566,266
INFO 2026-06-08 09:43:20 MarkDuplicates Tracking 564835 as yet unmatched pairs. 37644 records in RAM.
INFO 2026-06-08 09:43:22 MarkDuplicates Read 431,000,000 records. Elapsed time: 00:15:24s. Time for last 1,000,000: 1s. Last read position: chr15:49,011,754
INFO 2026-06-08 09:43:22 MarkDuplicates Tracking 562147 as yet unmatched pairs. 34948 records in RAM.
INFO 2026-06-08 09:43:24 MarkDuplicates Read 432,000,000 records. Elapsed time: 00:15:27s. Time for last 1,000,000: 2s. Last read position: chr15:56,919,923
INFO 2026-06-08 09:43:24 MarkDuplicates Tracking 560833 as yet unmatched pairs. 33632 records in RAM.
INFO 2026-06-08 09:43:26 MarkDuplicates Read 433,000,000 records. Elapsed time: 00:15:28s. Time for last 1,000,000: 1s. Last read position: chr15:60,349,077
INFO 2026-06-08 09:43:26 MarkDuplicates Tracking 559027 as yet unmatched pairs. 31824 records in RAM.
INFO 2026-06-08 09:43:28 MarkDuplicates Read 434,000,000 records. Elapsed time: 00:15:31s. Time for last 1,000,000: 2s. Last read position: chr15:63,071,218
INFO 2026-06-08 09:43:28 MarkDuplicates Tracking 554343 as yet unmatched pairs. 27138 records in RAM.
INFO 2026-06-08 09:43:30 MarkDuplicates Read 435,000,000 records. Elapsed time: 00:15:33s. Time for last 1,000,000: 2s. Last read position: chr15:65,877,929
INFO 2026-06-08 09:43:30 MarkDuplicates Tracking 553642 as yet unmatched pairs. 26435 records in RAM.
INFO 2026-06-08 09:43:32 MarkDuplicates Read 436,000,000 records. Elapsed time: 00:15:35s. Time for last 1,000,000: 1s. Last read position: chr15:70,055,129
INFO 2026-06-08 09:43:32 MarkDuplicates Tracking 549085 as yet unmatched pairs. 21876 records in RAM.
INFO 2026-06-08 09:43:34 MarkDuplicates Read 437,000,000 records. Elapsed time: 00:15:37s. Time for last 1,000,000: 2s. Last read position: chr15:73,052,629
INFO 2026-06-08 09:43:34 MarkDuplicates Tracking 546381 as yet unmatched pairs. 19165 records in RAM.
INFO 2026-06-08 09:43:36 MarkDuplicates Read 438,000,000 records. Elapsed time: 00:15:38s. Time for last 1,000,000: 1s. Last read position: chr15:74,800,821
INFO 2026-06-08 09:43:36 MarkDuplicates Tracking 543185 as yet unmatched pairs. 15954 records in RAM.
INFO 2026-06-08 09:43:38 MarkDuplicates Read 439,000,000 records. Elapsed time: 00:15:41s. Time for last 1,000,000: 2s. Last read position: chr15:76,292,447
INFO 2026-06-08 09:43:38 MarkDuplicates Tracking 541036 as yet unmatched pairs. 13798 records in RAM.
INFO 2026-06-08 09:43:40 MarkDuplicates Read 440,000,000 records. Elapsed time: 00:15:42s. Time for last 1,000,000: 1s. Last read position: chr15:81,299,763
INFO 2026-06-08 09:43:40 MarkDuplicates Tracking 537810 as yet unmatched pairs. 10567 records in RAM.
INFO 2026-06-08 09:43:42 MarkDuplicates Read 441,000,000 records. Elapsed time: 00:15:44s. Time for last 1,000,000: 2s. Last read position: chr15:85,769,360
INFO 2026-06-08 09:43:42 MarkDuplicates Tracking 535328 as yet unmatched pairs. 8081 records in RAM.
INFO 2026-06-08 09:43:44 MarkDuplicates Read 442,000,000 records. Elapsed time: 00:15:46s. Time for last 1,000,000: 2s. Last read position: chr15:90,230,401
INFO 2026-06-08 09:43:44 MarkDuplicates Tracking 534072 as yet unmatched pairs. 6824 records in RAM.
INFO 2026-06-08 09:43:46 MarkDuplicates Read 443,000,000 records. Elapsed time: 00:15:48s. Time for last 1,000,000: 1s. Last read position: chr15:93,052,443
INFO 2026-06-08 09:43:46 MarkDuplicates Tracking 529864 as yet unmatched pairs. 2610 records in RAM.
INFO 2026-06-08 09:43:49 MarkDuplicates Read 444,000,000 records. Elapsed time: 00:15:51s. Time for last 1,000,000: 2s. Last read position: chr16:61,853
INFO 2026-06-08 09:43:49 MarkDuplicates Tracking 527638 as yet unmatched pairs. 90995 records in RAM.
INFO 2026-06-08 09:43:51 MarkDuplicates Read 445,000,000 records. Elapsed time: 00:15:53s. Time for last 1,000,000: 1s. Last read position: chr16:666,325
INFO 2026-06-08 09:43:51 MarkDuplicates Tracking 524099 as yet unmatched pairs. 87455 records in RAM.
INFO 2026-06-08 09:43:53 MarkDuplicates Read 446,000,000 records. Elapsed time: 00:15:55s. Time for last 1,000,000: 2s. Last read position: chr16:1,352,151
INFO 2026-06-08 09:43:53 MarkDuplicates Tracking 520729 as yet unmatched pairs. 84083 records in RAM.
INFO 2026-06-08 09:43:55 MarkDuplicates Read 447,000,000 records. Elapsed time: 00:15:57s. Time for last 1,000,000: 1s. Last read position: chr16:2,056,742
INFO 2026-06-08 09:43:55 MarkDuplicates Tracking 516919 as yet unmatched pairs. 80271 records in RAM.
INFO 2026-06-08 09:43:57 MarkDuplicates Read 448,000,000 records. Elapsed time: 00:15:59s. Time for last 1,000,000: 2s. Last read position: chr16:2,519,595
INFO 2026-06-08 09:43:57 MarkDuplicates Tracking 514767 as yet unmatched pairs. 78119 records in RAM.
INFO 2026-06-08 09:43:59 MarkDuplicates Read 449,000,000 records. Elapsed time: 00:16:01s. Time for last 1,000,000: 2s. Last read position: chr16:2,772,001
INFO 2026-06-08 09:43:59 MarkDuplicates Tracking 515105 as yet unmatched pairs. 78456 records in RAM.
INFO 2026-06-08 09:44:01 MarkDuplicates Read 450,000,000 records. Elapsed time: 00:16:03s. Time for last 1,000,000: 1s. Last read position: chr16:3,512,381
INFO 2026-06-08 09:44:01 MarkDuplicates Tracking 508037 as yet unmatched pairs. 71388 records in RAM.
INFO 2026-06-08 09:44:03 MarkDuplicates Read 451,000,000 records. Elapsed time: 00:16:05s. Time for last 1,000,000: 2s. Last read position: chr16:4,883,977
INFO 2026-06-08 09:44:03 MarkDuplicates Tracking 505414 as yet unmatched pairs. 68764 records in RAM.
INFO 2026-06-08 09:44:05 MarkDuplicates Read 452,000,000 records. Elapsed time: 00:16:07s. Time for last 1,000,000: 1s. Last read position: chr16:11,927,688
INFO 2026-06-08 09:44:05 MarkDuplicates Tracking 502208 as yet unmatched pairs. 65557 records in RAM.
INFO 2026-06-08 09:44:07 MarkDuplicates Read 453,000,000 records. Elapsed time: 00:16:09s. Time for last 1,000,000: 1s. Last read position: chr16:15,114,464
INFO 2026-06-08 09:44:07 MarkDuplicates Tracking 500809 as yet unmatched pairs. 64158 records in RAM.
INFO 2026-06-08 09:44:08 MarkDuplicates Read 454,000,000 records. Elapsed time: 00:16:11s. Time for last 1,000,000: 1s. Last read position: chr16:16,293,686
INFO 2026-06-08 09:44:08 MarkDuplicates Tracking 498461 as yet unmatched pairs. 61800 records in RAM.
INFO 2026-06-08 09:44:10 MarkDuplicates Read 455,000,000 records. Elapsed time: 00:16:12s. Time for last 1,000,000: 1s. Last read position: chr16:18,350,750
INFO 2026-06-08 09:44:10 MarkDuplicates Tracking 498159 as yet unmatched pairs. 61498 records in RAM.
INFO 2026-06-08 09:44:12 MarkDuplicates Read 456,000,000 records. Elapsed time: 00:16:14s. Time for last 1,000,000: 1s. Last read position: chr16:18,876,148
INFO 2026-06-08 09:44:12 MarkDuplicates Tracking 496329 as yet unmatched pairs. 59668 records in RAM.
INFO 2026-06-08 09:44:14 MarkDuplicates Read 457,000,000 records. Elapsed time: 00:16:16s. Time for last 1,000,000: 1s. Last read position: chr16:21,405,000
INFO 2026-06-08 09:44:14 MarkDuplicates Tracking 494293 as yet unmatched pairs. 57631 records in RAM.
INFO 2026-06-08 09:44:15 MarkDuplicates Read 458,000,000 records. Elapsed time: 00:16:18s. Time for last 1,000,000: 1s. Last read position: chr16:21,837,695
INFO 2026-06-08 09:44:15 MarkDuplicates Tracking 493083 as yet unmatched pairs. 56421 records in RAM.
INFO 2026-06-08 09:44:17 MarkDuplicates Read 459,000,000 records. Elapsed time: 00:16:19s. Time for last 1,000,000: 1s. Last read position: chr16:22,533,909
INFO 2026-06-08 09:44:17 MarkDuplicates Tracking 492593 as yet unmatched pairs. 55928 records in RAM.
INFO 2026-06-08 09:44:19 MarkDuplicates Read 460,000,000 records. Elapsed time: 00:16:21s. Time for last 1,000,000: 1s. Last read position: chr16:27,344,975
INFO 2026-06-08 09:44:19 MarkDuplicates Tracking 490486 as yet unmatched pairs. 53820 records in RAM.
INFO 2026-06-08 09:44:21 MarkDuplicates Read 461,000,000 records. Elapsed time: 00:16:23s. Time for last 1,000,000: 1s. Last read position: chr16:28,823,494
INFO 2026-06-08 09:44:21 MarkDuplicates Tracking 488394 as yet unmatched pairs. 51728 records in RAM.
INFO 2026-06-08 09:44:22 MarkDuplicates Read 462,000,000 records. Elapsed time: 00:16:24s. Time for last 1,000,000: 1s. Last read position: chr16:29,483,850
INFO 2026-06-08 09:44:22 MarkDuplicates Tracking 489123 as yet unmatched pairs. 52457 records in RAM.
INFO 2026-06-08 09:44:24 MarkDuplicates Read 463,000,000 records. Elapsed time: 00:16:26s. Time for last 1,000,000: 1s. Last read position: chr16:29,844,824
INFO 2026-06-08 09:44:24 MarkDuplicates Tracking 485139 as yet unmatched pairs. 48472 records in RAM.
INFO 2026-06-08 09:44:26 MarkDuplicates Read 464,000,000 records. Elapsed time: 00:16:28s. Time for last 1,000,000: 1s. Last read position: chr16:30,187,499
INFO 2026-06-08 09:44:26 MarkDuplicates Tracking 481531 as yet unmatched pairs. 44860 records in RAM.
INFO 2026-06-08 09:44:28 MarkDuplicates Read 465,000,000 records. Elapsed time: 00:16:30s. Time for last 1,000,000: 1s. Last read position: chr16:30,665,668
INFO 2026-06-08 09:44:28 MarkDuplicates Tracking 480116 as yet unmatched pairs. 43445 records in RAM.
INFO 2026-06-08 09:44:30 MarkDuplicates Read 466,000,000 records. Elapsed time: 00:16:32s. Time for last 1,000,000: 2s. Last read position: chr16:31,180,159
INFO 2026-06-08 09:44:30 MarkDuplicates Tracking 477437 as yet unmatched pairs. 40765 records in RAM.
INFO 2026-06-08 09:44:32 MarkDuplicates Read 467,000,000 records. Elapsed time: 00:16:34s. Time for last 1,000,000: 2s. Last read position: chr16:48,334,242
INFO 2026-06-08 09:44:32 MarkDuplicates Tracking 474271 as yet unmatched pairs. 37597 records in RAM.
INFO 2026-06-08 09:44:34 MarkDuplicates Read 468,000,000 records. Elapsed time: 00:16:36s. Time for last 1,000,000: 1s. Last read position: chr16:56,407,975
INFO 2026-06-08 09:44:34 MarkDuplicates Tracking 471904 as yet unmatched pairs. 35224 records in RAM.
INFO 2026-06-08 09:44:36 MarkDuplicates Read 469,000,000 records. Elapsed time: 00:16:38s. Time for last 1,000,000: 2s. Last read position: chr16:57,650,211
INFO 2026-06-08 09:44:36 MarkDuplicates Tracking 470705 as yet unmatched pairs. 34025 records in RAM.
INFO 2026-06-08 09:44:38 MarkDuplicates Read 470,000,000 records. Elapsed time: 00:16:40s. Time for last 1,000,000: 1s. Last read position: chr16:64,948,058
INFO 2026-06-08 09:44:38 MarkDuplicates Tracking 466211 as yet unmatched pairs. 29531 records in RAM.
INFO 2026-06-08 09:44:40 MarkDuplicates Read 471,000,000 records. Elapsed time: 00:16:42s. Time for last 1,000,000: 2s. Last read position: chr16:67,543,093
INFO 2026-06-08 09:44:40 MarkDuplicates Tracking 463356 as yet unmatched pairs. 26674 records in RAM.
INFO 2026-06-08 09:44:42 MarkDuplicates Read 472,000,000 records. Elapsed time: 00:16:44s. Time for last 1,000,000: 1s. Last read position: chr16:68,808,708
INFO 2026-06-08 09:44:42 MarkDuplicates Tracking 460322 as yet unmatched pairs. 23640 records in RAM.
INFO 2026-06-08 09:44:44 MarkDuplicates Read 473,000,000 records. Elapsed time: 00:16:46s. Time for last 1,000,000: 2s. Last read position: chr16:69,935,935
INFO 2026-06-08 09:44:44 MarkDuplicates Tracking 457126 as yet unmatched pairs. 20444 records in RAM.
INFO 2026-06-08 09:44:46 MarkDuplicates Read 474,000,000 records. Elapsed time: 00:16:48s. Time for last 1,000,000: 2s. Last read position: chr16:71,850,244
INFO 2026-06-08 09:44:46 MarkDuplicates Tracking 454403 as yet unmatched pairs. 17702 records in RAM.
INFO 2026-06-08 09:44:48 MarkDuplicates Read 475,000,000 records. Elapsed time: 00:16:50s. Time for last 1,000,000: 1s. Last read position: chr16:75,235,293
INFO 2026-06-08 09:44:48 MarkDuplicates Tracking 452316 as yet unmatched pairs. 15614 records in RAM.
INFO 2026-06-08 09:44:50 MarkDuplicates Read 476,000,000 records. Elapsed time: 00:16:52s. Time for last 1,000,000: 2s. Last read position: chr16:84,179,611
INFO 2026-06-08 09:44:50 MarkDuplicates Tracking 449259 as yet unmatched pairs. 12547 records in RAM.
INFO 2026-06-08 09:44:51 MarkDuplicates Read 477,000,000 records. Elapsed time: 00:16:54s. Time for last 1,000,000: 1s. Last read position: chr16:88,428,685
INFO 2026-06-08 09:44:51 MarkDuplicates Tracking 445825 as yet unmatched pairs. 9113 records in RAM.
INFO 2026-06-08 09:44:54 MarkDuplicates Read 478,000,000 records. Elapsed time: 00:16:56s. Time for last 1,000,000: 2s. Last read position: chr16:88,726,409
INFO 2026-06-08 09:44:54 MarkDuplicates Tracking 442848 as yet unmatched pairs. 6135 records in RAM.
INFO 2026-06-08 09:44:56 MarkDuplicates Read 479,000,000 records. Elapsed time: 00:16:58s. Time for last 1,000,000: 2s. Last read position: chr16:89,561,628
INFO 2026-06-08 09:44:56 MarkDuplicates Tracking 443590 as yet unmatched pairs. 6876 records in RAM.
INFO 2026-06-08 09:44:59 MarkDuplicates Read 480,000,000 records. Elapsed time: 00:17:01s. Time for last 1,000,000: 3s. Last read position: chr17:1,012,747
INFO 2026-06-08 09:44:59 MarkDuplicates Tracking 436289 as yet unmatched pairs. 137921 records in RAM.
INFO 2026-06-08 09:45:01 MarkDuplicates Read 481,000,000 records. Elapsed time: 00:17:03s. Time for last 1,000,000: 2s. Last read position: chr17:1,727,919
INFO 2026-06-08 09:45:01 MarkDuplicates Tracking 433488 as yet unmatched pairs. 135112 records in RAM.
INFO 2026-06-08 09:45:03 MarkDuplicates Read 482,000,000 records. Elapsed time: 00:17:05s. Time for last 1,000,000: 1s. Last read position: chr17:4,532,548
INFO 2026-06-08 09:45:03 MarkDuplicates Tracking 431200 as yet unmatched pairs. 132822 records in RAM.
INFO 2026-06-08 09:45:05 MarkDuplicates Read 483,000,000 records. Elapsed time: 00:17:07s. Time for last 1,000,000: 2s. Last read position: chr17:5,020,009
INFO 2026-06-08 09:45:05 MarkDuplicates Tracking 428018 as yet unmatched pairs. 129640 records in RAM.
INFO 2026-06-08 09:45:07 MarkDuplicates Read 484,000,000 records. Elapsed time: 00:17:09s. Time for last 1,000,000: 1s. Last read position: chr17:7,312,065
INFO 2026-06-08 09:45:07 MarkDuplicates Tracking 426323 as yet unmatched pairs. 127945 records in RAM.
INFO 2026-06-08 09:45:09 MarkDuplicates Read 485,000,000 records. Elapsed time: 00:17:12s. Time for last 1,000,000: 2s. Last read position: chr17:7,579,976
INFO 2026-06-08 09:45:09 MarkDuplicates Tracking 423822 as yet unmatched pairs. 125443 records in RAM.
INFO 2026-06-08 09:45:11 MarkDuplicates Read 486,000,000 records. Elapsed time: 00:17:14s. Time for last 1,000,000: 2s. Last read position: chr17:8,492,939
INFO 2026-06-08 09:45:11 MarkDuplicates Tracking 419333 as yet unmatched pairs. 120952 records in RAM.
INFO 2026-06-08 09:45:13 MarkDuplicates Read 487,000,000 records. Elapsed time: 00:17:16s. Time for last 1,000,000: 1s. Last read position: chr17:17,158,561
INFO 2026-06-08 09:45:13 MarkDuplicates Tracking 417943 as yet unmatched pairs. 119562 records in RAM.
INFO 2026-06-08 09:45:15 MarkDuplicates Read 488,000,000 records. Elapsed time: 00:17:18s. Time for last 1,000,000: 2s. Last read position: chr17:18,670,871
INFO 2026-06-08 09:45:15 MarkDuplicates Tracking 413759 as yet unmatched pairs. 115378 records in RAM.
INFO 2026-06-08 09:45:17 MarkDuplicates Read 489,000,000 records. Elapsed time: 00:17:19s. Time for last 1,000,000: 1s. Last read position: chr17:28,634,847
INFO 2026-06-08 09:45:17 MarkDuplicates Tracking 411389 as yet unmatched pairs. 113006 records in RAM.
INFO 2026-06-08 09:45:19 MarkDuplicates Read 490,000,000 records. Elapsed time: 00:17:22s. Time for last 1,000,000: 2s. Last read position: chr17:30,462,044
INFO 2026-06-08 09:45:19 MarkDuplicates Tracking 408455 as yet unmatched pairs. 110067 records in RAM.
INFO 2026-06-08 09:45:21 MarkDuplicates Read 491,000,000 records. Elapsed time: 00:17:23s. Time for last 1,000,000: 1s. Last read position: chr17:35,766,581
INFO 2026-06-08 09:45:21 MarkDuplicates Tracking 405627 as yet unmatched pairs. 107235 records in RAM.
INFO 2026-06-08 09:45:23 MarkDuplicates Read 492,000,000 records. Elapsed time: 00:17:25s. Time for last 1,000,000: 1s. Last read position: chr17:38,198,085
INFO 2026-06-08 09:45:23 MarkDuplicates Tracking 403954 as yet unmatched pairs. 105559 records in RAM.
INFO 2026-06-08 09:45:25 MarkDuplicates Read 493,000,000 records. Elapsed time: 00:17:27s. Time for last 1,000,000: 2s. Last read position: chr17:39,653,591
INFO 2026-06-08 09:45:25 MarkDuplicates Tracking 401406 as yet unmatched pairs. 103011 records in RAM.
INFO 2026-06-08 09:45:27 MarkDuplicates Read 494,000,000 records. Elapsed time: 00:17:29s. Time for last 1,000,000: 1s. Last read position: chr17:40,022,786
INFO 2026-06-08 09:45:27 MarkDuplicates Tracking 398410 as yet unmatched pairs. 100015 records in RAM.
INFO 2026-06-08 09:45:29 MarkDuplicates Read 495,000,000 records. Elapsed time: 00:17:31s. Time for last 1,000,000: 2s. Last read position: chr17:41,523,779
INFO 2026-06-08 09:45:29 MarkDuplicates Tracking 398422 as yet unmatched pairs. 100024 records in RAM.
INFO 2026-06-08 09:45:31 MarkDuplicates Read 496,000,000 records. Elapsed time: 00:17:33s. Time for last 1,000,000: 1s. Last read position: chr17:41,769,532
INFO 2026-06-08 09:45:31 MarkDuplicates Tracking 393235 as yet unmatched pairs. 94837 records in RAM.
INFO 2026-06-08 09:45:33 MarkDuplicates Read 497,000,000 records. Elapsed time: 00:17:35s. Time for last 1,000,000: 2s. Last read position: chr17:42,795,196
INFO 2026-06-08 09:45:33 MarkDuplicates Tracking 389428 as yet unmatched pairs. 91028 records in RAM.
INFO 2026-06-08 09:45:35 MarkDuplicates Read 498,000,000 records. Elapsed time: 00:17:37s. Time for last 1,000,000: 1s. Last read position: chr17:44,349,704
INFO 2026-06-08 09:45:35 MarkDuplicates Tracking 387320 as yet unmatched pairs. 88920 records in RAM.
INFO 2026-06-08 09:45:37 MarkDuplicates Read 499,000,000 records. Elapsed time: 00:17:39s. Time for last 1,000,000: 2s. Last read position: chr17:45,519,189
INFO 2026-06-08 09:45:37 MarkDuplicates Tracking 383657 as yet unmatched pairs. 85253 records in RAM.
INFO 2026-06-08 09:45:39 MarkDuplicates Read 500,000,000 records. Elapsed time: 00:17:41s. Time for last 1,000,000: 1s. Last read position: chr17:48,058,516
INFO 2026-06-08 09:45:39 MarkDuplicates Tracking 381659 as yet unmatched pairs. 83252 records in RAM.
INFO 2026-06-08 09:47:54 MarkDuplicates Read 501,000,000 records. Elapsed time: 00:19:56s. Time for last 1,000,000: 134s. Last read position: chr17:50,185,521
INFO 2026-06-08 09:47:54 MarkDuplicates Tracking 386500 as yet unmatched pairs. 88093 records in RAM.
INFO 2026-06-08 09:47:56 MarkDuplicates Read 502,000,000 records. Elapsed time: 00:19:58s. Time for last 1,000,000: 2s. Last read position: chr17:50,186,828
INFO 2026-06-08 09:47:56 MarkDuplicates Tracking 383361 as yet unmatched pairs. 84951 records in RAM.
INFO 2026-06-08 09:47:58 MarkDuplicates Read 503,000,000 records. Elapsed time: 00:20:00s. Time for last 1,000,000: 2s. Last read position: chr17:50,187,927
INFO 2026-06-08 09:47:58 MarkDuplicates Tracking 396456 as yet unmatched pairs. 98046 records in RAM.
INFO 2026-06-08 09:48:00 MarkDuplicates Read 504,000,000 records. Elapsed time: 00:20:03s. Time for last 1,000,000: 2s. Last read position: chr17:50,188,765
INFO 2026-06-08 09:48:00 MarkDuplicates Tracking 392314 as yet unmatched pairs. 93904 records in RAM.
INFO 2026-06-08 09:48:03 MarkDuplicates Read 505,000,000 records. Elapsed time: 00:20:05s. Time for last 1,000,000: 2s. Last read position: chr17:50,189,436
INFO 2026-06-08 09:48:03 MarkDuplicates Tracking 390695 as yet unmatched pairs. 92283 records in RAM.
INFO 2026-06-08 09:48:05 MarkDuplicates Read 506,000,000 records. Elapsed time: 00:20:07s. Time for last 1,000,000: 2s. Last read position: chr17:50,190,039
INFO 2026-06-08 09:48:05 MarkDuplicates Tracking 393140 as yet unmatched pairs. 94728 records in RAM.
INFO 2026-06-08 09:48:07 MarkDuplicates Read 507,000,000 records. Elapsed time: 00:20:09s. Time for last 1,000,000: 2s. Last read position: chr17:50,191,410
INFO 2026-06-08 09:48:07 MarkDuplicates Tracking 381209 as yet unmatched pairs. 82797 records in RAM.
INFO 2026-06-08 09:48:09 MarkDuplicates Read 508,000,000 records. Elapsed time: 00:20:11s. Time for last 1,000,000: 2s. Last read position: chr17:50,192,676
INFO 2026-06-08 09:48:09 MarkDuplicates Tracking 391229 as yet unmatched pairs. 92817 records in RAM.
INFO 2026-06-08 09:48:11 MarkDuplicates Read 509,000,000 records. Elapsed time: 00:20:13s. Time for last 1,000,000: 2s. Last read position: chr17:50,194,129
INFO 2026-06-08 09:48:11 MarkDuplicates Tracking 387746 as yet unmatched pairs. 89332 records in RAM.
INFO 2026-06-08 09:48:13 MarkDuplicates Read 510,000,000 records. Elapsed time: 00:20:16s. Time for last 1,000,000: 2s. Last read position: chr17:50,194,757
INFO 2026-06-08 09:48:13 MarkDuplicates Tracking 375030 as yet unmatched pairs. 76615 records in RAM.
INFO 2026-06-08 09:48:15 MarkDuplicates Read 511,000,000 records. Elapsed time: 00:20:18s. Time for last 1,000,000: 2s. Last read position: chr17:50,195,604
INFO 2026-06-08 09:48:15 MarkDuplicates Tracking 388835 as yet unmatched pairs. 90420 records in RAM.
INFO 2026-06-08 09:48:18 MarkDuplicates Read 512,000,000 records. Elapsed time: 00:20:20s. Time for last 1,000,000: 2s. Last read position: chr17:50,196,346
INFO 2026-06-08 09:48:18 MarkDuplicates Tracking 378055 as yet unmatched pairs. 79640 records in RAM.
INFO 2026-06-08 09:48:20 MarkDuplicates Read 513,000,000 records. Elapsed time: 00:20:22s. Time for last 1,000,000: 2s. Last read position: chr17:50,197,231
INFO 2026-06-08 09:48:20 MarkDuplicates Tracking 376415 as yet unmatched pairs. 78000 records in RAM.
INFO 2026-06-08 09:48:22 MarkDuplicates Read 514,000,000 records. Elapsed time: 00:20:24s. Time for last 1,000,000: 2s. Last read position: chr17:50,199,275
INFO 2026-06-08 09:48:22 MarkDuplicates Tracking 364296 as yet unmatched pairs. 65879 records in RAM.
INFO 2026-06-08 09:48:24 MarkDuplicates Read 515,000,000 records. Elapsed time: 00:20:26s. Time for last 1,000,000: 2s. Last read position: chr17:50,634,867
INFO 2026-06-08 09:48:24 MarkDuplicates Tracking 336893 as yet unmatched pairs. 38476 records in RAM.
INFO 2026-06-08 09:48:26 MarkDuplicates Read 516,000,000 records. Elapsed time: 00:20:28s. Time for last 1,000,000: 1s. Last read position: chr17:58,346,168
INFO 2026-06-08 09:48:26 MarkDuplicates Tracking 334100 as yet unmatched pairs. 35683 records in RAM.
INFO 2026-06-08 09:48:28 MarkDuplicates Read 517,000,000 records. Elapsed time: 00:20:30s. Time for last 1,000,000: 2s. Last read position: chr17:59,697,835
INFO 2026-06-08 09:48:28 MarkDuplicates Tracking 331096 as yet unmatched pairs. 32678 records in RAM.
INFO 2026-06-08 09:48:30 MarkDuplicates Read 518,000,000 records. Elapsed time: 00:20:32s. Time for last 1,000,000: 1s. Last read position: chr17:64,500,047
INFO 2026-06-08 09:48:30 MarkDuplicates Tracking 328955 as yet unmatched pairs. 30537 records in RAM.
INFO 2026-06-08 09:48:32 MarkDuplicates Read 519,000,000 records. Elapsed time: 00:20:34s. Time for last 1,000,000: 2s. Last read position: chr17:68,515,521
INFO 2026-06-08 09:48:32 MarkDuplicates Tracking 327125 as yet unmatched pairs. 28707 records in RAM.
INFO 2026-06-08 09:48:34 MarkDuplicates Read 520,000,000 records. Elapsed time: 00:20:36s. Time for last 1,000,000: 1s. Last read position: chr17:75,209,839
INFO 2026-06-08 09:48:34 MarkDuplicates Tracking 322926 as yet unmatched pairs. 24505 records in RAM.
INFO 2026-06-08 09:48:36 MarkDuplicates Read 521,000,000 records. Elapsed time: 00:20:38s. Time for last 1,000,000: 2s. Last read position: chr17:75,731,819
INFO 2026-06-08 09:48:36 MarkDuplicates Tracking 320626 as yet unmatched pairs. 22205 records in RAM.
INFO 2026-06-08 09:48:38 MarkDuplicates Read 522,000,000 records. Elapsed time: 00:20:40s. Time for last 1,000,000: 2s. Last read position: chr17:75,836,016
INFO 2026-06-08 09:48:38 MarkDuplicates Tracking 318502 as yet unmatched pairs. 20080 records in RAM.
INFO 2026-06-08 09:48:40 MarkDuplicates Read 523,000,000 records. Elapsed time: 00:20:42s. Time for last 1,000,000: 1s. Last read position: chr17:76,736,379
INFO 2026-06-08 09:48:40 MarkDuplicates Tracking 314017 as yet unmatched pairs. 15595 records in RAM.
INFO 2026-06-08 09:48:42 MarkDuplicates Read 524,000,000 records. Elapsed time: 00:20:44s. Time for last 1,000,000: 2s. Last read position: chr17:78,972,677
INFO 2026-06-08 09:48:42 MarkDuplicates Tracking 310942 as yet unmatched pairs. 12520 records in RAM.
INFO 2026-06-08 09:48:44 MarkDuplicates Read 525,000,000 records. Elapsed time: 00:20:46s. Time for last 1,000,000: 1s. Last read position: chr17:80,353,660
INFO 2026-06-08 09:48:44 MarkDuplicates Tracking 307762 as yet unmatched pairs. 9340 records in RAM.
INFO 2026-06-08 09:48:46 MarkDuplicates Read 526,000,000 records. Elapsed time: 00:20:48s. Time for last 1,000,000: 2s. Last read position: chr17:81,604,634
INFO 2026-06-08 09:48:46 MarkDuplicates Tracking 304499 as yet unmatched pairs. 6077 records in RAM.
INFO 2026-06-08 09:48:48 MarkDuplicates Read 527,000,000 records. Elapsed time: 00:20:50s. Time for last 1,000,000: 1s. Last read position: chr17:82,064,148
INFO 2026-06-08 09:48:48 MarkDuplicates Tracking 301438 as yet unmatched pairs. 3016 records in RAM.
INFO 2026-06-08 09:48:50 MarkDuplicates Read 528,000,000 records. Elapsed time: 00:20:52s. Time for last 1,000,000: 2s. Last read position: chr18:2,587,905
INFO 2026-06-08 09:48:50 MarkDuplicates Tracking 298018 as yet unmatched pairs. 15969 records in RAM.
INFO 2026-06-08 09:48:52 MarkDuplicates Read 529,000,000 records. Elapsed time: 00:20:54s. Time for last 1,000,000: 2s. Last read position: chr18:12,657,579
INFO 2026-06-08 09:48:52 MarkDuplicates Tracking 295601 as yet unmatched pairs. 13549 records in RAM.
INFO 2026-06-08 09:48:54 MarkDuplicates Read 530,000,000 records. Elapsed time: 00:20:56s. Time for last 1,000,000: 1s. Last read position: chr18:23,898,755
INFO 2026-06-08 09:48:54 MarkDuplicates Tracking 295269 as yet unmatched pairs. 13213 records in RAM.
INFO 2026-06-08 09:48:56 MarkDuplicates Read 531,000,000 records. Elapsed time: 00:20:58s. Time for last 1,000,000: 2s. Last read position: chr18:31,531,034
INFO 2026-06-08 09:48:56 MarkDuplicates Tracking 293417 as yet unmatched pairs. 11361 records in RAM.
INFO 2026-06-08 09:48:58 MarkDuplicates Read 532,000,000 records. Elapsed time: 00:21:00s. Time for last 1,000,000: 1s. Last read position: chr18:45,860,308
INFO 2026-06-08 09:48:58 MarkDuplicates Tracking 288169 as yet unmatched pairs. 6104 records in RAM.
INFO 2026-06-08 09:49:00 MarkDuplicates Read 533,000,000 records. Elapsed time: 00:21:02s. Time for last 1,000,000: 2s. Last read position: chr18:50,274,978
INFO 2026-06-08 09:49:00 MarkDuplicates Tracking 285757 as yet unmatched pairs. 3692 records in RAM.
INFO 2026-06-08 09:49:02 MarkDuplicates Read 534,000,000 records. Elapsed time: 00:21:04s. Time for last 1,000,000: 2s. Last read position: chr18:76,379,984
INFO 2026-06-08 09:49:02 MarkDuplicates Tracking 282802 as yet unmatched pairs. 736 records in RAM.
INFO 2026-06-08 09:49:05 MarkDuplicates Read 535,000,000 records. Elapsed time: 00:21:08s. Time for last 1,000,000: 3s. Last read position: chr19:758,194
INFO 2026-06-08 09:49:05 MarkDuplicates Tracking 280705 as yet unmatched pairs. 125550 records in RAM.
INFO 2026-06-08 09:49:07 MarkDuplicates Read 536,000,000 records. Elapsed time: 00:21:10s. Time for last 1,000,000: 2s. Last read position: chr19:1,106,628
INFO 2026-06-08 09:49:07 MarkDuplicates Tracking 276722 as yet unmatched pairs. 121567 records in RAM.
INFO 2026-06-08 09:49:09 MarkDuplicates Read 537,000,000 records. Elapsed time: 00:21:12s. Time for last 1,000,000: 1s. Last read position: chr19:1,555,842
INFO 2026-06-08 09:49:09 MarkDuplicates Tracking 274401 as yet unmatched pairs. 119245 records in RAM.
INFO 2026-06-08 09:49:11 MarkDuplicates Read 538,000,000 records. Elapsed time: 00:21:14s. Time for last 1,000,000: 2s. Last read position: chr19:2,226,729
INFO 2026-06-08 09:49:11 MarkDuplicates Tracking 269672 as yet unmatched pairs. 114516 records in RAM.
INFO 2026-06-08 09:49:13 MarkDuplicates Read 539,000,000 records. Elapsed time: 00:21:16s. Time for last 1,000,000: 1s. Last read position: chr19:3,557,195
INFO 2026-06-08 09:49:13 MarkDuplicates Tracking 266646 as yet unmatched pairs. 111490 records in RAM.
INFO 2026-06-08 09:49:16 MarkDuplicates Read 540,000,000 records. Elapsed time: 00:21:18s. Time for last 1,000,000: 2s. Last read position: chr19:4,694,661
INFO 2026-06-08 09:49:16 MarkDuplicates Tracking 263753 as yet unmatched pairs. 108597 records in RAM.
INFO 2026-06-08 09:49:18 MarkDuplicates Read 541,000,000 records. Elapsed time: 00:21:20s. Time for last 1,000,000: 2s. Last read position: chr19:6,368,588
INFO 2026-06-08 09:49:18 MarkDuplicates Tracking 260123 as yet unmatched pairs. 104964 records in RAM.
INFO 2026-06-08 09:49:20 MarkDuplicates Read 542,000,000 records. Elapsed time: 00:21:22s. Time for last 1,000,000: 1s. Last read position: chr19:7,560,749
INFO 2026-06-08 09:49:20 MarkDuplicates Tracking 257237 as yet unmatched pairs. 102078 records in RAM.
INFO 2026-06-08 09:49:22 MarkDuplicates Read 543,000,000 records. Elapsed time: 00:21:24s. Time for last 1,000,000: 2s. Last read position: chr19:8,906,723
INFO 2026-06-08 09:49:22 MarkDuplicates Tracking 254797 as yet unmatched pairs. 99638 records in RAM.
INFO 2026-06-08 09:49:24 MarkDuplicates Read 544,000,000 records. Elapsed time: 00:21:26s. Time for last 1,000,000: 1s. Last read position: chr19:10,115,478
INFO 2026-06-08 09:49:24 MarkDuplicates Tracking 252077 as yet unmatched pairs. 96918 records in RAM.
INFO 2026-06-08 09:49:26 MarkDuplicates Read 545,000,000 records. Elapsed time: 00:21:28s. Time for last 1,000,000: 2s. Last read position: chr19:10,829,205
INFO 2026-06-08 09:49:26 MarkDuplicates Tracking 249203 as yet unmatched pairs. 94043 records in RAM.
INFO 2026-06-08 09:49:28 MarkDuplicates Read 546,000,000 records. Elapsed time: 00:21:30s. Time for last 1,000,000: 1s. Last read position: chr19:11,449,110
INFO 2026-06-08 09:49:28 MarkDuplicates Tracking 246669 as yet unmatched pairs. 91504 records in RAM.
INFO 2026-06-08 09:49:30 MarkDuplicates Read 547,000,000 records. Elapsed time: 00:21:32s. Time for last 1,000,000: 2s. Last read position: chr19:12,948,755
INFO 2026-06-08 09:49:30 MarkDuplicates Tracking 243621 as yet unmatched pairs. 88456 records in RAM.
INFO 2026-06-08 09:49:32 MarkDuplicates Read 548,000,000 records. Elapsed time: 00:21:34s. Time for last 1,000,000: 2s. Last read position: chr19:14,470,185
INFO 2026-06-08 09:49:32 MarkDuplicates Tracking 240217 as yet unmatched pairs. 85051 records in RAM.
INFO 2026-06-08 09:49:34 MarkDuplicates Read 549,000,000 records. Elapsed time: 00:21:36s. Time for last 1,000,000: 1s. Last read position: chr19:15,244,457
INFO 2026-06-08 09:49:34 MarkDuplicates Tracking 237592 as yet unmatched pairs. 82426 records in RAM.
INFO 2026-06-08 09:49:36 MarkDuplicates Read 550,000,000 records. Elapsed time: 00:21:38s. Time for last 1,000,000: 2s. Last read position: chr19:16,519,620
INFO 2026-06-08 09:49:36 MarkDuplicates Tracking 234291 as yet unmatched pairs. 79118 records in RAM.
INFO 2026-06-08 09:49:38 MarkDuplicates Read 551,000,000 records. Elapsed time: 00:21:40s. Time for last 1,000,000: 1s. Last read position: chr19:17,812,034
INFO 2026-06-08 09:49:38 MarkDuplicates Tracking 230931 as yet unmatched pairs. 75757 records in RAM.
INFO 2026-06-08 09:49:40 MarkDuplicates Read 552,000,000 records. Elapsed time: 00:21:42s. Time for last 1,000,000: 2s. Last read position: chr19:18,589,033
INFO 2026-06-08 09:49:40 MarkDuplicates Tracking 227790 as yet unmatched pairs. 72616 records in RAM.
INFO 2026-06-08 09:49:42 MarkDuplicates Read 553,000,000 records. Elapsed time: 00:21:44s. Time for last 1,000,000: 1s. Last read position: chr19:23,827,428
INFO 2026-06-08 09:49:42 MarkDuplicates Tracking 225091 as yet unmatched pairs. 69916 records in RAM.
INFO 2026-06-08 09:49:44 MarkDuplicates Read 554,000,000 records. Elapsed time: 00:21:46s. Time for last 1,000,000: 2s. Last read position: chr19:34,430,619
INFO 2026-06-08 09:49:44 MarkDuplicates Tracking 222921 as yet unmatched pairs. 67746 records in RAM.
INFO 2026-06-08 09:49:46 MarkDuplicates Read 555,000,000 records. Elapsed time: 00:21:48s. Time for last 1,000,000: 2s. Last read position: chr19:35,267,309
INFO 2026-06-08 09:49:46 MarkDuplicates Tracking 220039 as yet unmatched pairs. 64863 records in RAM.
INFO 2026-06-08 09:49:48 MarkDuplicates Read 556,000,000 records. Elapsed time: 00:21:50s. Time for last 1,000,000: 1s. Last read position: chr19:35,755,558
INFO 2026-06-08 09:49:48 MarkDuplicates Tracking 215851 as yet unmatched pairs. 60675 records in RAM.
INFO 2026-06-08 09:49:50 MarkDuplicates Read 557,000,000 records. Elapsed time: 00:21:52s. Time for last 1,000,000: 2s. Last read position: chr19:38,264,934
INFO 2026-06-08 09:49:50 MarkDuplicates Tracking 215477 as yet unmatched pairs. 60301 records in RAM.
INFO 2026-06-08 09:49:52 MarkDuplicates Read 558,000,000 records. Elapsed time: 00:21:54s. Time for last 1,000,000: 1s. Last read position: chr19:38,801,861
INFO 2026-06-08 09:49:52 MarkDuplicates Tracking 211045 as yet unmatched pairs. 55869 records in RAM.
INFO 2026-06-08 09:49:54 MarkDuplicates Read 559,000,000 records. Elapsed time: 00:21:56s. Time for last 1,000,000: 2s. Last read position: chr19:39,433,351
INFO 2026-06-08 09:49:54 MarkDuplicates Tracking 209837 as yet unmatched pairs. 54661 records in RAM.
INFO 2026-06-08 09:49:56 MarkDuplicates Read 560,000,000 records. Elapsed time: 00:21:58s. Time for last 1,000,000: 2s. Last read position: chr19:40,605,612
INFO 2026-06-08 09:49:56 MarkDuplicates Tracking 204430 as yet unmatched pairs. 49254 records in RAM.
INFO 2026-06-08 09:49:58 MarkDuplicates Read 561,000,000 records. Elapsed time: 00:22:00s. Time for last 1,000,000: 1s. Last read position: chr19:41,708,664
INFO 2026-06-08 09:49:58 MarkDuplicates Tracking 212467 as yet unmatched pairs. 57291 records in RAM.
INFO 2026-06-08 09:50:00 MarkDuplicates Read 562,000,000 records. Elapsed time: 00:22:02s. Time for last 1,000,000: 2s. Last read position: chr19:41,718,336
INFO 2026-06-08 09:50:00 MarkDuplicates Tracking 204683 as yet unmatched pairs. 49507 records in RAM.
INFO 2026-06-08 09:50:02 MarkDuplicates Read 563,000,000 records. Elapsed time: 00:22:04s. Time for last 1,000,000: 1s. Last read position: chr19:41,894,513
INFO 2026-06-08 09:50:02 MarkDuplicates Tracking 197149 as yet unmatched pairs. 41973 records in RAM.
INFO 2026-06-08 09:50:04 MarkDuplicates Read 564,000,000 records. Elapsed time: 00:22:06s. Time for last 1,000,000: 2s. Last read position: chr19:42,292,976
INFO 2026-06-08 09:50:04 MarkDuplicates Tracking 195433 as yet unmatched pairs. 40257 records in RAM.
INFO 2026-06-08 09:50:06 MarkDuplicates Read 565,000,000 records. Elapsed time: 00:22:08s. Time for last 1,000,000: 1s. Last read position: chr19:44,873,951
INFO 2026-06-08 09:50:06 MarkDuplicates Tracking 191282 as yet unmatched pairs. 36102 records in RAM.
INFO 2026-06-08 09:50:08 MarkDuplicates Read 566,000,000 records. Elapsed time: 00:22:10s. Time for last 1,000,000: 2s. Last read position: chr19:45,770,584
INFO 2026-06-08 09:50:08 MarkDuplicates Tracking 187924 as yet unmatched pairs. 32739 records in RAM.
INFO 2026-06-08 09:50:10 MarkDuplicates Read 567,000,000 records. Elapsed time: 00:22:12s. Time for last 1,000,000: 2s. Last read position: chr19:47,258,346
INFO 2026-06-08 09:50:10 MarkDuplicates Tracking 184341 as yet unmatched pairs. 29155 records in RAM.
INFO 2026-06-08 09:50:12 MarkDuplicates Read 568,000,000 records. Elapsed time: 00:22:14s. Time for last 1,000,000: 1s. Last read position: chr19:48,615,727
INFO 2026-06-08 09:50:12 MarkDuplicates Tracking 182122 as yet unmatched pairs. 26936 records in RAM.
INFO 2026-06-08 09:50:14 MarkDuplicates Read 569,000,000 records. Elapsed time: 00:22:16s. Time for last 1,000,000: 2s. Last read position: chr19:49,462,012
INFO 2026-06-08 09:50:14 MarkDuplicates Tracking 178501 as yet unmatched pairs. 23313 records in RAM.
INFO 2026-06-08 09:50:16 MarkDuplicates Read 570,000,000 records. Elapsed time: 00:22:18s. Time for last 1,000,000: 1s. Last read position: chr19:49,653,387
INFO 2026-06-08 09:50:16 MarkDuplicates Tracking 175711 as yet unmatched pairs. 20523 records in RAM.
INFO 2026-06-08 09:50:18 MarkDuplicates Read 571,000,000 records. Elapsed time: 00:22:20s. Time for last 1,000,000: 2s. Last read position: chr19:50,261,489
INFO 2026-06-08 09:50:18 MarkDuplicates Tracking 172898 as yet unmatched pairs. 17709 records in RAM.
INFO 2026-06-08 09:50:20 MarkDuplicates Read 572,000,000 records. Elapsed time: 00:22:22s. Time for last 1,000,000: 2s. Last read position: chr19:51,016,111
INFO 2026-06-08 09:50:20 MarkDuplicates Tracking 170922 as yet unmatched pairs. 15733 records in RAM.
INFO 2026-06-08 09:50:22 MarkDuplicates Read 573,000,000 records. Elapsed time: 00:22:24s. Time for last 1,000,000: 1s. Last read position: chr19:53,874,005
INFO 2026-06-08 09:50:22 MarkDuplicates Tracking 166516 as yet unmatched pairs. 11327 records in RAM.
INFO 2026-06-08 09:50:24 MarkDuplicates Read 574,000,000 records. Elapsed time: 00:22:26s. Time for last 1,000,000: 2s. Last read position: chr19:55,079,705
INFO 2026-06-08 09:50:24 MarkDuplicates Tracking 164931 as yet unmatched pairs. 9739 records in RAM.
INFO 2026-06-08 09:50:26 MarkDuplicates Read 575,000,000 records. Elapsed time: 00:22:28s. Time for last 1,000,000: 1s. Last read position: chr19:55,518,276
INFO 2026-06-08 09:50:26 MarkDuplicates Tracking 160132 as yet unmatched pairs. 4939 records in RAM.
INFO 2026-06-08 09:50:28 MarkDuplicates Read 576,000,000 records. Elapsed time: 00:22:30s. Time for last 1,000,000: 2s. Last read position: chr19:58,262,270
INFO 2026-06-08 09:50:28 MarkDuplicates Tracking 157195 as yet unmatched pairs. 1999 records in RAM.
INFO 2026-06-08 09:50:30 MarkDuplicates Read 577,000,000 records. Elapsed time: 00:22:33s. Time for last 1,000,000: 2s. Last read position: chr20:2,461,762
INFO 2026-06-08 09:50:30 MarkDuplicates Tracking 154850 as yet unmatched pairs. 46491 records in RAM.
INFO 2026-06-08 09:50:32 MarkDuplicates Read 578,000,000 records. Elapsed time: 00:22:35s. Time for last 1,000,000: 2s. Last read position: chr20:8,150,298
INFO 2026-06-08 09:50:32 MarkDuplicates Tracking 150937 as yet unmatched pairs. 42576 records in RAM.
INFO 2026-06-08 09:50:35 MarkDuplicates Read 579,000,000 records. Elapsed time: 00:22:37s. Time for last 1,000,000: 2s. Last read position: chr20:21,755,251
INFO 2026-06-08 09:50:35 MarkDuplicates Tracking 148489 as yet unmatched pairs. 40128 records in RAM.
INFO 2026-06-08 09:50:36 MarkDuplicates Read 580,000,000 records. Elapsed time: 00:22:39s. Time for last 1,000,000: 1s. Last read position: chr20:31,721,859
INFO 2026-06-08 09:50:36 MarkDuplicates Tracking 149927 as yet unmatched pairs. 41566 records in RAM.
INFO 2026-06-08 09:50:38 MarkDuplicates Read 581,000,000 records. Elapsed time: 00:22:41s. Time for last 1,000,000: 2s. Last read position: chr20:34,492,516
INFO 2026-06-08 09:50:38 MarkDuplicates Tracking 143424 as yet unmatched pairs. 35063 records in RAM.
INFO 2026-06-08 09:50:40 MarkDuplicates Read 582,000,000 records. Elapsed time: 00:22:43s. Time for last 1,000,000: 1s. Last read position: chr20:35,652,518
INFO 2026-06-08 09:50:40 MarkDuplicates Tracking 140607 as yet unmatched pairs. 32246 records in RAM.
INFO 2026-06-08 09:50:42 MarkDuplicates Read 583,000,000 records. Elapsed time: 00:22:45s. Time for last 1,000,000: 2s. Last read position: chr20:37,223,913
INFO 2026-06-08 09:50:42 MarkDuplicates Tracking 138199 as yet unmatched pairs. 29838 records in RAM.
INFO 2026-06-08 09:50:44 MarkDuplicates Read 584,000,000 records. Elapsed time: 00:22:47s. Time for last 1,000,000: 1s. Last read position: chr20:41,533,351
INFO 2026-06-08 09:50:44 MarkDuplicates Tracking 134996 as yet unmatched pairs. 26635 records in RAM.
INFO 2026-06-08 09:50:46 MarkDuplicates Read 585,000,000 records. Elapsed time: 00:22:49s. Time for last 1,000,000: 2s. Last read position: chr20:45,424,287
INFO 2026-06-08 09:50:46 MarkDuplicates Tracking 133061 as yet unmatched pairs. 24700 records in RAM.
INFO 2026-06-08 09:50:49 MarkDuplicates Read 586,000,000 records. Elapsed time: 00:22:51s. Time for last 1,000,000: 2s. Last read position: chr20:47,684,460
INFO 2026-06-08 09:50:49 MarkDuplicates Tracking 129832 as yet unmatched pairs. 21471 records in RAM.
INFO 2026-06-08 09:50:50 MarkDuplicates Read 587,000,000 records. Elapsed time: 00:22:53s. Time for last 1,000,000: 1s. Last read position: chr20:50,749,897
INFO 2026-06-08 09:50:50 MarkDuplicates Tracking 126751 as yet unmatched pairs. 18390 records in RAM.
INFO 2026-06-08 09:50:53 MarkDuplicates Read 588,000,000 records. Elapsed time: 00:22:55s. Time for last 1,000,000: 2s. Last read position: chr20:58,309,909
INFO 2026-06-08 09:50:53 MarkDuplicates Tracking 124183 as yet unmatched pairs. 15821 records in RAM.
INFO 2026-06-08 09:50:54 MarkDuplicates Read 589,000,000 records. Elapsed time: 00:22:57s. Time for last 1,000,000: 1s. Last read position: chr20:62,139,852
INFO 2026-06-08 09:50:54 MarkDuplicates Tracking 122192 as yet unmatched pairs. 13830 records in RAM.
INFO 2026-06-08 09:50:57 MarkDuplicates Read 590,000,000 records. Elapsed time: 00:22:59s. Time for last 1,000,000: 2s. Last read position: chr20:62,334,280
INFO 2026-06-08 09:50:57 MarkDuplicates Tracking 118748 as yet unmatched pairs. 10386 records in RAM.
INFO 2026-06-08 09:50:58 MarkDuplicates Read 591,000,000 records. Elapsed time: 00:23:01s. Time for last 1,000,000: 1s. Last read position: chr20:63,202,888
INFO 2026-06-08 09:50:58 MarkDuplicates Tracking 114781 as yet unmatched pairs. 6417 records in RAM.
INFO 2026-06-08 09:51:00 MarkDuplicates Read 592,000,000 records. Elapsed time: 00:23:03s. Time for last 1,000,000: 2s. Last read position: chr20:63,569,112
INFO 2026-06-08 09:51:00 MarkDuplicates Tracking 111542 as yet unmatched pairs. 3178 records in RAM.
INFO 2026-06-08 09:51:03 MarkDuplicates Read 593,000,000 records. Elapsed time: 00:23:05s. Time for last 1,000,000: 2s. Last read position: chr21:6,119,138
INFO 2026-06-08 09:51:03 MarkDuplicates Tracking 108123 as yet unmatched pairs. 18467 records in RAM.
INFO 2026-06-08 09:51:04 MarkDuplicates Read 594,000,000 records. Elapsed time: 00:23:06s. Time for last 1,000,000: 1s. Last read position: chr21:8,399,032
INFO 2026-06-08 09:51:04 MarkDuplicates Tracking 107625 as yet unmatched pairs. 17967 records in RAM.
INFO 2026-06-08 09:51:06 MarkDuplicates Read 595,000,000 records. Elapsed time: 00:23:08s. Time for last 1,000,000: 1s. Last read position: chr21:15,808,847
INFO 2026-06-08 09:51:06 MarkDuplicates Tracking 104946 as yet unmatched pairs. 15287 records in RAM.
INFO 2026-06-08 09:51:08 MarkDuplicates Read 596,000,000 records. Elapsed time: 00:23:10s. Time for last 1,000,000: 1s. Last read position: chr21:33,550,320
INFO 2026-06-08 09:51:08 MarkDuplicates Tracking 103080 as yet unmatched pairs. 13421 records in RAM.
INFO 2026-06-08 09:51:09 MarkDuplicates Read 597,000,000 records. Elapsed time: 00:23:12s. Time for last 1,000,000: 1s. Last read position: chr21:38,813,047
INFO 2026-06-08 09:51:09 MarkDuplicates Tracking 99942 as yet unmatched pairs. 10282 records in RAM.
INFO 2026-06-08 09:51:11 MarkDuplicates Read 598,000,000 records. Elapsed time: 00:23:14s. Time for last 1,000,000: 2s. Last read position: chr21:42,562,106
INFO 2026-06-08 09:51:11 MarkDuplicates Tracking 96593 as yet unmatched pairs. 6933 records in RAM.
INFO 2026-06-08 09:51:13 MarkDuplicates Read 599,000,000 records. Elapsed time: 00:23:16s. Time for last 1,000,000: 1s. Last read position: chr21:45,495,411
INFO 2026-06-08 09:51:13 MarkDuplicates Tracking 93956 as yet unmatched pairs. 4288 records in RAM.
INFO 2026-06-08 09:51:16 MarkDuplicates Read 600,000,000 records. Elapsed time: 00:23:18s. Time for last 1,000,000: 2s. Last read position: chr21:46,266,000
INFO 2026-06-08 09:51:16 MarkDuplicates Tracking 90435 as yet unmatched pairs. 765 records in RAM.
INFO 2026-06-08 09:51:18 MarkDuplicates Read 601,000,000 records. Elapsed time: 00:23:20s. Time for last 1,000,000: 2s. Last read position: chr22:20,116,126
INFO 2026-06-08 09:51:18 MarkDuplicates Tracking 87574 as yet unmatched pairs. 38343 records in RAM.
INFO 2026-06-08 09:51:20 MarkDuplicates Read 602,000,000 records. Elapsed time: 00:23:22s. Time for last 1,000,000: 2s. Last read position: chr22:21,945,885
INFO 2026-06-08 09:51:20 MarkDuplicates Tracking 84637 as yet unmatched pairs. 35406 records in RAM.
INFO 2026-06-08 09:51:22 MarkDuplicates Read 603,000,000 records. Elapsed time: 00:23:24s. Time for last 1,000,000: 2s. Last read position: chr22:23,767,535
INFO 2026-06-08 09:51:22 MarkDuplicates Tracking 81869 as yet unmatched pairs. 32638 records in RAM.
INFO 2026-06-08 09:51:24 MarkDuplicates Read 604,000,000 records. Elapsed time: 00:23:26s. Time for last 1,000,000: 1s. Last read position: chr22:27,853,600
INFO 2026-06-08 09:51:24 MarkDuplicates Tracking 78610 as yet unmatched pairs. 29378 records in RAM.
INFO 2026-06-08 09:51:26 MarkDuplicates Read 605,000,000 records. Elapsed time: 00:23:28s. Time for last 1,000,000: 2s. Last read position: chr22:30,025,646
INFO 2026-06-08 09:51:26 MarkDuplicates Tracking 75465 as yet unmatched pairs. 26232 records in RAM.
INFO 2026-06-08 09:51:28 MarkDuplicates Read 606,000,000 records. Elapsed time: 00:23:30s. Time for last 1,000,000: 1s. Last read position: chr22:33,650,626
INFO 2026-06-08 09:51:28 MarkDuplicates Tracking 73065 as yet unmatched pairs. 23832 records in RAM.
INFO 2026-06-08 09:51:30 MarkDuplicates Read 607,000,000 records. Elapsed time: 00:23:32s. Time for last 1,000,000: 2s. Last read position: chr22:36,341,418
INFO 2026-06-08 09:51:30 MarkDuplicates Tracking 69986 as yet unmatched pairs. 20753 records in RAM.
INFO 2026-06-08 09:51:32 MarkDuplicates Read 608,000,000 records. Elapsed time: 00:23:34s. Time for last 1,000,000: 1s. Last read position: chr22:37,863,025
INFO 2026-06-08 09:51:32 MarkDuplicates Tracking 67409 as yet unmatched pairs. 18176 records in RAM.
INFO 2026-06-08 09:51:34 MarkDuplicates Read 609,000,000 records. Elapsed time: 00:23:36s. Time for last 1,000,000: 2s. Last read position: chr22:39,513,903
INFO 2026-06-08 09:51:34 MarkDuplicates Tracking 64058 as yet unmatched pairs. 14824 records in RAM.
INFO 2026-06-08 09:51:36 MarkDuplicates Read 610,000,000 records. Elapsed time: 00:23:38s. Time for last 1,000,000: 2s. Last read position: chr22:41,636,603
INFO 2026-06-08 09:51:36 MarkDuplicates Tracking 61436 as yet unmatched pairs. 12202 records in RAM.
INFO 2026-06-08 09:51:38 MarkDuplicates Read 611,000,000 records. Elapsed time: 00:23:40s. Time for last 1,000,000: 1s. Last read position: chr22:45,175,854
INFO 2026-06-08 09:51:38 MarkDuplicates Tracking 58071 as yet unmatched pairs. 8837 records in RAM.
INFO 2026-06-08 09:51:40 MarkDuplicates Read 612,000,000 records. Elapsed time: 00:23:42s. Time for last 1,000,000: 2s. Last read position: chr22:50,246,938
INFO 2026-06-08 09:51:40 MarkDuplicates Tracking 54606 as yet unmatched pairs. 5372 records in RAM.
INFO 2026-06-08 09:51:42 MarkDuplicates Read 613,000,000 records. Elapsed time: 00:23:44s. Time for last 1,000,000: 1s. Last read position: chr22:50,525,757
INFO 2026-06-08 09:51:42 MarkDuplicates Tracking 52677 as yet unmatched pairs. 3443 records in RAM.
INFO 2026-06-08 09:51:44 MarkDuplicates Read 614,000,000 records. Elapsed time: 00:23:46s. Time for last 1,000,000: 2s. Last read position: chrX:3,320,990
INFO 2026-06-08 09:51:44 MarkDuplicates Tracking 47646 as yet unmatched pairs. 43291 records in RAM.
INFO 2026-06-08 09:51:46 MarkDuplicates Read 615,000,000 records. Elapsed time: 00:23:48s. Time for last 1,000,000: 2s. Last read position: chrX:18,901,568
INFO 2026-06-08 09:51:46 MarkDuplicates Tracking 45102 as yet unmatched pairs. 40747 records in RAM.
INFO 2026-06-08 09:51:48 MarkDuplicates Read 616,000,000 records. Elapsed time: 00:23:50s. Time for last 1,000,000: 1s. Last read position: chrX:37,425,878
INFO 2026-06-08 09:51:48 MarkDuplicates Tracking 42752 as yet unmatched pairs. 38397 records in RAM.
INFO 2026-06-08 09:51:50 MarkDuplicates Read 617,000,000 records. Elapsed time: 00:23:52s. Time for last 1,000,000: 2s. Last read position: chrX:41,695,487
INFO 2026-06-08 09:51:50 MarkDuplicates Tracking 40302 as yet unmatched pairs. 35947 records in RAM.
INFO 2026-06-08 09:51:52 MarkDuplicates Read 618,000,000 records. Elapsed time: 00:23:54s. Time for last 1,000,000: 1s. Last read position: chrX:47,584,944
INFO 2026-06-08 09:51:52 MarkDuplicates Tracking 40006 as yet unmatched pairs. 35651 records in RAM.
INFO 2026-06-08 09:51:54 MarkDuplicates Read 619,000,000 records. Elapsed time: 00:23:56s. Time for last 1,000,000: 2s. Last read position: chrX:48,962,685
INFO 2026-06-08 09:51:54 MarkDuplicates Tracking 34278 as yet unmatched pairs. 29923 records in RAM.
INFO 2026-06-08 09:51:56 MarkDuplicates Read 620,000,000 records. Elapsed time: 00:23:58s. Time for last 1,000,000: 1s. Last read position: chrX:53,266,795
INFO 2026-06-08 09:51:56 MarkDuplicates Tracking 31593 as yet unmatched pairs. 27238 records in RAM.
INFO 2026-06-08 09:51:58 MarkDuplicates Read 621,000,000 records. Elapsed time: 00:24:00s. Time for last 1,000,000: 2s. Last read position: chrX:56,565,016
INFO 2026-06-08 09:51:58 MarkDuplicates Tracking 28972 as yet unmatched pairs. 24617 records in RAM.
INFO 2026-06-08 09:52:00 MarkDuplicates Read 622,000,000 records. Elapsed time: 00:24:02s. Time for last 1,000,000: 2s. Last read position: chrX:71,294,326
INFO 2026-06-08 09:52:00 MarkDuplicates Tracking 26972 as yet unmatched pairs. 22617 records in RAM.
INFO 2026-06-08 09:52:02 MarkDuplicates Read 623,000,000 records. Elapsed time: 00:24:04s. Time for last 1,000,000: 1s. Last read position: chrX:77,682,232
INFO 2026-06-08 09:52:02 MarkDuplicates Tracking 23480 as yet unmatched pairs. 19125 records in RAM.
INFO 2026-06-08 09:52:04 MarkDuplicates Read 624,000,000 records. Elapsed time: 00:24:06s. Time for last 1,000,000: 2s. Last read position: chrX:102,655,809
INFO 2026-06-08 09:52:04 MarkDuplicates Tracking 21219 as yet unmatched pairs. 16864 records in RAM.
INFO 2026-06-08 09:52:06 MarkDuplicates Read 625,000,000 records. Elapsed time: 00:24:08s. Time for last 1,000,000: 1s. Last read position: chrX:119,786,685
INFO 2026-06-08 09:52:06 MarkDuplicates Tracking 21133 as yet unmatched pairs. 16778 records in RAM.
INFO 2026-06-08 09:52:08 MarkDuplicates Read 626,000,000 records. Elapsed time: 00:24:10s. Time for last 1,000,000: 2s. Last read position: chrX:134,789,085
INFO 2026-06-08 09:52:08 MarkDuplicates Tracking 16812 as yet unmatched pairs. 12457 records in RAM.
INFO 2026-06-08 09:52:10 MarkDuplicates Read 627,000,000 records. Elapsed time: 00:24:12s. Time for last 1,000,000: 1s. Last read position: chrX:153,729,294
INFO 2026-06-08 09:52:10 MarkDuplicates Tracking 14126 as yet unmatched pairs. 9771 records in RAM.
INFO 2026-06-08 09:52:12 MarkDuplicates Read 628,000,000 records. Elapsed time: 00:24:14s. Time for last 1,000,000: 2s. Last read position: chrX:154,030,806
INFO 2026-06-08 09:52:12 MarkDuplicates Tracking 10752 as yet unmatched pairs. 6397 records in RAM.
INFO 2026-06-08 09:52:14 MarkDuplicates Read 629,000,000 records. Elapsed time: 00:24:16s. Time for last 1,000,000: 2s. Last read position: chrX:154,364,639
INFO 2026-06-08 09:52:14 MarkDuplicates Tracking 8621 as yet unmatched pairs. 4266 records in RAM.
INFO 2026-06-08 09:52:16 MarkDuplicates Read 630,000,000 records. Elapsed time: 00:24:18s. Time for last 1,000,000: 1s. Last read position: chrX:154,562,779
INFO 2026-06-08 09:52:16 MarkDuplicates Tracking 5040 as yet unmatched pairs. 685 records in RAM.
INFO 2026-06-08 09:52:17 MarkDuplicates Read 631,000,000 records. Elapsed time: 00:24:20s. Time for last 1,000,000: 1s. Last read position: GL000220.1:116,880
INFO 2026-06-08 09:52:17 MarkDuplicates Tracking 3243 as yet unmatched pairs. 77 records in RAM.
INFO 2026-06-08 09:52:19 MarkDuplicates Read 632,000,000 records. Elapsed time: 00:24:21s. Time for last 1,000,000: 1s. Last read position: KI270733.1:133,640
INFO 2026-06-08 09:52:19 MarkDuplicates Tracking 1142 as yet unmatched pairs. 1114 records in RAM.
INFO 2026-06-08 09:52:20 MarkDuplicates Read 632670881 records. 0 pairs never matched.
INFO 2026-06-08 09:53:03 MarkDuplicates After buildSortedReadEndLists freeMemory: 58052166120; totalMemory: 82879447040; maxMemory: 127137742848
INFO 2026-06-08 09:53:03 MarkDuplicates Will retain up to 2147483642 duplicate indices before spilling to disk.
INFO 2026-06-08 09:53:04 MarkDuplicates Traversing read pair information and detecting duplicates.
INFO 2026-06-08 09:53:39 OpticalDuplicateFinder Large duplicate set. size = 1008
INFO 2026-06-08 09:53:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,104
INFO 2026-06-08 09:53:40 OpticalDuplicateFinder Large duplicate set. size = 1657
INFO 2026-06-08 09:53:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,891
INFO 2026-06-08 09:53:43 OpticalDuplicateFinder Large duplicate set. size = 1650
INFO 2026-06-08 09:53:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,742
INFO 2026-06-08 09:54:25 OpticalDuplicateFinder Large duplicate set. size = 1148
INFO 2026-06-08 09:54:25 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,237
INFO 2026-06-08 09:54:25 OpticalDuplicateFinder Large duplicate set. size = 1369
INFO 2026-06-08 09:54:25 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,843
INFO 2026-06-08 09:54:27 OpticalDuplicateFinder Large duplicate set. size = 1050
INFO 2026-06-08 09:54:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-13,885
INFO 2026-06-08 09:54:27 OpticalDuplicateFinder Large duplicate set. size = 1043
INFO 2026-06-08 09:54:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,375
INFO 2026-06-08 09:54:27 OpticalDuplicateFinder Large duplicate set. size = 1065
INFO 2026-06-08 09:54:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,625
INFO 2026-06-08 09:54:27 OpticalDuplicateFinder Large duplicate set. size = 1411
INFO 2026-06-08 09:54:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,966
INFO 2026-06-08 09:54:27 OpticalDuplicateFinder Large duplicate set. size = 1046
INFO 2026-06-08 09:54:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,118
INFO 2026-06-08 09:54:27 OpticalDuplicateFinder Large duplicate set. size = 1074
INFO 2026-06-08 09:54:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,729
INFO 2026-06-08 09:54:27 OpticalDuplicateFinder Large duplicate set. size = 1508
INFO 2026-06-08 09:54:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,521
INFO 2026-06-08 09:54:27 OpticalDuplicateFinder Large duplicate set. size = 1482
INFO 2026-06-08 09:54:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,961
INFO 2026-06-08 09:54:28 OpticalDuplicateFinder Large duplicate set. size = 1244
INFO 2026-06-08 09:54:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,214
INFO 2026-06-08 09:54:38 MarkDuplicates Traversing fragment information and detecting duplicates.
WARNING 2026-06-08 09:54:38 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 09:55:56 MarkDuplicates Sorting list of duplicate records.
INFO 2026-06-08 09:56:05 MarkDuplicates After generateDuplicateIndexes freeMemory: 203960784; totalMemory: 234881024; maxMemory: 127137742848
INFO 2026-06-08 09:56:05 MarkDuplicates Marking 394888822 records as duplicates.
INFO 2026-06-08 09:56:05 MarkDuplicates Found 11944419 optical duplicate clusters.
INFO 2026-06-08 09:56:05 MarkDuplicates Reads are assumed to be ordered by: coordinate
INFO 2026-06-08 09:56:23 MarkDuplicates Written 10,000,000 records. Elapsed time: 00:00:18s. Time for last 10,000,000: 18s. Last read position: chr1:26,281,108
INFO 2026-06-08 09:56:41 MarkDuplicates Written 20,000,000 records. Elapsed time: 00:00:36s. Time for last 10,000,000: 17s. Last read position: chr1:61,352,520
INFO 2026-06-08 09:56:59 MarkDuplicates Written 30,000,000 records. Elapsed time: 00:00:54s. Time for last 10,000,000: 17s. Last read position: chr1:150,578,856
INFO 2026-06-08 09:57:17 MarkDuplicates Written 40,000,000 records. Elapsed time: 00:01:12s. Time for last 10,000,000: 17s. Last read position: chr1:169,530,820
INFO 2026-06-08 09:57:35 MarkDuplicates Written 50,000,000 records. Elapsed time: 00:01:30s. Time for last 10,000,000: 18s. Last read position: chr1:224,433,930
INFO 2026-06-08 09:57:53 MarkDuplicates Written 60,000,000 records. Elapsed time: 00:01:48s. Time for last 10,000,000: 18s. Last read position: chr2:32,916,264
INFO 2026-06-08 09:58:12 MarkDuplicates Written 70,000,000 records. Elapsed time: 00:02:07s. Time for last 10,000,000: 18s. Last read position: chr2:73,830,959
INFO 2026-06-08 09:58:30 MarkDuplicates Written 80,000,000 records. Elapsed time: 00:02:25s. Time for last 10,000,000: 18s. Last read position: chr2:151,278,832
INFO 2026-06-08 09:58:49 MarkDuplicates Written 90,000,000 records. Elapsed time: 00:02:43s. Time for last 10,000,000: 18s. Last read position: chr2:215,370,398
INFO 2026-06-08 09:59:07 MarkDuplicates Written 100,000,000 records. Elapsed time: 00:03:01s. Time for last 10,000,000: 17s. Last read position: chr2:218,264,409
INFO 2026-06-08 09:59:25 MarkDuplicates Written 110,000,000 records. Elapsed time: 00:03:19s. Time for last 10,000,000: 18s. Last read position: chr3:33,866,450
INFO 2026-06-08 09:59:43 MarkDuplicates Written 120,000,000 records. Elapsed time: 00:03:38s. Time for last 10,000,000: 18s. Last read position: chr3:56,882,297
INFO 2026-06-08 10:00:01 MarkDuplicates Written 130,000,000 records. Elapsed time: 00:03:56s. Time for last 10,000,000: 18s. Last read position: chr3:149,520,779
INFO 2026-06-08 10:00:19 MarkDuplicates Written 140,000,000 records. Elapsed time: 00:04:14s. Time for last 10,000,000: 18s. Last read position: chr3:195,786,848
INFO 2026-06-08 10:00:38 MarkDuplicates Written 150,000,000 records. Elapsed time: 00:04:32s. Time for last 10,000,000: 18s. Last read position: chr4:99,916,120
INFO 2026-06-08 10:00:56 MarkDuplicates Written 160,000,000 records. Elapsed time: 00:04:51s. Time for last 10,000,000: 18s. Last read position: chr5:52,927,632
INFO 2026-06-08 10:01:14 MarkDuplicates Written 170,000,000 records. Elapsed time: 00:05:09s. Time for last 10,000,000: 18s. Last read position: chr5:150,135,633
INFO 2026-06-08 10:01:32 MarkDuplicates Written 180,000,000 records. Elapsed time: 00:05:27s. Time for last 10,000,000: 18s. Last read position: chr6:15,410,256
INFO 2026-06-08 10:01:50 MarkDuplicates Written 190,000,000 records. Elapsed time: 00:05:45s. Time for last 10,000,000: 17s. Last read position: chr6:32,578,997
INFO 2026-06-08 10:02:08 MarkDuplicates Written 200,000,000 records. Elapsed time: 00:06:03s. Time for last 10,000,000: 18s. Last read position: chr6:89,081,146
INFO 2026-06-08 10:02:27 MarkDuplicates Written 210,000,000 records. Elapsed time: 00:06:21s. Time for last 10,000,000: 18s. Last read position: chr6:158,794,189
INFO 2026-06-08 10:02:45 MarkDuplicates Written 220,000,000 records. Elapsed time: 00:06:39s. Time for last 10,000,000: 18s. Last read position: chr7:36,297,124
INFO 2026-06-08 10:03:03 MarkDuplicates Written 230,000,000 records. Elapsed time: 00:06:57s. Time for last 10,000,000: 18s. Last read position: chr7:94,418,498
INFO 2026-06-08 10:03:21 MarkDuplicates Written 240,000,000 records. Elapsed time: 00:07:15s. Time for last 10,000,000: 18s. Last read position: chr7:116,759,452
INFO 2026-06-08 10:03:39 MarkDuplicates Written 250,000,000 records. Elapsed time: 00:07:34s. Time for last 10,000,000: 18s. Last read position: chr8:9,776,804
INFO 2026-06-08 10:03:57 MarkDuplicates Written 260,000,000 records. Elapsed time: 00:07:52s. Time for last 10,000,000: 18s. Last read position: chr8:100,704,936
INFO 2026-06-08 10:04:15 MarkDuplicates Written 270,000,000 records. Elapsed time: 00:08:10s. Time for last 10,000,000: 17s. Last read position: chr8:143,919,495
INFO 2026-06-08 10:04:33 MarkDuplicates Written 280,000,000 records. Elapsed time: 00:08:27s. Time for last 10,000,000: 17s. Last read position: chr9:85,202,119
INFO 2026-06-08 10:04:51 MarkDuplicates Written 290,000,000 records. Elapsed time: 00:08:46s. Time for last 10,000,000: 18s. Last read position: chr9:133,763,967
INFO 2026-06-08 10:05:09 MarkDuplicates Written 300,000,000 records. Elapsed time: 00:09:04s. Time for last 10,000,000: 17s. Last read position: chr10:48,425,910
INFO 2026-06-08 10:05:27 MarkDuplicates Written 310,000,000 records. Elapsed time: 00:09:22s. Time for last 10,000,000: 18s. Last read position: chr10:102,657,006
INFO 2026-06-08 10:05:46 MarkDuplicates Written 320,000,000 records. Elapsed time: 00:09:40s. Time for last 10,000,000: 18s. Last read position: chr11:1,245,322
INFO 2026-06-08 10:06:04 MarkDuplicates Written 330,000,000 records. Elapsed time: 00:09:58s. Time for last 10,000,000: 17s. Last read position: chr11:57,816,322
INFO 2026-06-08 10:06:22 MarkDuplicates Written 340,000,000 records. Elapsed time: 00:10:16s. Time for last 10,000,000: 18s. Last read position: chr11:66,688,723
INFO 2026-06-08 10:06:40 MarkDuplicates Written 350,000,000 records. Elapsed time: 00:10:34s. Time for last 10,000,000: 18s. Last read position: chr11:118,779,691
INFO 2026-06-08 10:06:58 MarkDuplicates Written 360,000,000 records. Elapsed time: 00:10:52s. Time for last 10,000,000: 17s. Last read position: chr12:22,493,311
INFO 2026-06-08 10:07:15 MarkDuplicates Written 370,000,000 records. Elapsed time: 00:11:10s. Time for last 10,000,000: 17s. Last read position: chr12:55,760,615
INFO 2026-06-08 10:07:34 MarkDuplicates Written 380,000,000 records. Elapsed time: 00:11:28s. Time for last 10,000,000: 18s. Last read position: chr12:105,199,375
INFO 2026-06-08 10:07:52 MarkDuplicates Written 390,000,000 records. Elapsed time: 00:11:46s. Time for last 10,000,000: 17s. Last read position: chr12:132,808,278
INFO 2026-06-08 10:08:10 MarkDuplicates Written 400,000,000 records. Elapsed time: 00:12:05s. Time for last 10,000,000: 18s. Last read position: chr13:110,424,952
INFO 2026-06-08 10:08:28 MarkDuplicates Written 410,000,000 records. Elapsed time: 00:12:23s. Time for last 10,000,000: 18s. Last read position: chr14:68,910,030
INFO 2026-06-08 10:08:46 MarkDuplicates Written 420,000,000 records. Elapsed time: 00:12:41s. Time for last 10,000,000: 18s. Last read position: chr14:104,950,460
INFO 2026-06-08 10:09:04 MarkDuplicates Written 430,000,000 records. Elapsed time: 00:12:58s. Time for last 10,000,000: 17s. Last read position: chr15:44,566,266
INFO 2026-06-08 10:09:22 MarkDuplicates Written 440,000,000 records. Elapsed time: 00:13:16s. Time for last 10,000,000: 17s. Last read position: chr15:81,299,763
INFO 2026-06-08 10:09:39 MarkDuplicates Written 450,000,000 records. Elapsed time: 00:13:34s. Time for last 10,000,000: 17s. Last read position: chr16:3,512,381
INFO 2026-06-08 10:09:57 MarkDuplicates Written 460,000,000 records. Elapsed time: 00:13:52s. Time for last 10,000,000: 18s. Last read position: chr16:27,344,975
INFO 2026-06-08 10:10:15 MarkDuplicates Written 470,000,000 records. Elapsed time: 00:14:10s. Time for last 10,000,000: 17s. Last read position: chr16:64,948,058
INFO 2026-06-08 10:10:33 MarkDuplicates Written 480,000,000 records. Elapsed time: 00:14:28s. Time for last 10,000,000: 18s. Last read position: chr17:1,012,747
INFO 2026-06-08 10:10:51 MarkDuplicates Written 490,000,000 records. Elapsed time: 00:14:46s. Time for last 10,000,000: 17s. Last read position: chr17:30,462,044
INFO 2026-06-08 10:11:09 MarkDuplicates Written 500,000,000 records. Elapsed time: 00:15:04s. Time for last 10,000,000: 17s. Last read position: chr17:48,058,516
INFO 2026-06-08 10:11:27 MarkDuplicates Written 510,000,000 records. Elapsed time: 00:15:22s. Time for last 10,000,000: 17s. Last read position: chr17:50,194,757
INFO 2026-06-08 10:11:45 MarkDuplicates Written 520,000,000 records. Elapsed time: 00:15:39s. Time for last 10,000,000: 17s. Last read position: chr17:75,209,839
INFO 2026-06-08 10:12:02 MarkDuplicates Written 530,000,000 records. Elapsed time: 00:15:57s. Time for last 10,000,000: 17s. Last read position: chr18:23,898,755
INFO 2026-06-08 10:12:20 MarkDuplicates Written 540,000,000 records. Elapsed time: 00:16:15s. Time for last 10,000,000: 17s. Last read position: chr19:4,694,661
INFO 2026-06-08 10:12:38 MarkDuplicates Written 550,000,000 records. Elapsed time: 00:16:32s. Time for last 10,000,000: 17s. Last read position: chr19:16,519,620
INFO 2026-06-08 10:12:56 MarkDuplicates Written 560,000,000 records. Elapsed time: 00:16:50s. Time for last 10,000,000: 17s. Last read position: chr19:40,605,612
INFO 2026-06-08 10:13:13 MarkDuplicates Written 570,000,000 records. Elapsed time: 00:17:08s. Time for last 10,000,000: 17s. Last read position: chr19:49,653,387
INFO 2026-06-08 10:13:31 MarkDuplicates Written 580,000,000 records. Elapsed time: 00:17:26s. Time for last 10,000,000: 17s. Last read position: chr20:31,721,859
INFO 2026-06-08 10:13:49 MarkDuplicates Written 590,000,000 records. Elapsed time: 00:17:44s. Time for last 10,000,000: 17s. Last read position: chr20:62,334,280
INFO 2026-06-08 10:14:06 MarkDuplicates Written 600,000,000 records. Elapsed time: 00:18:01s. Time for last 10,000,000: 17s. Last read position: chr21:46,266,000
INFO 2026-06-08 10:14:24 MarkDuplicates Written 610,000,000 records. Elapsed time: 00:18:19s. Time for last 10,000,000: 17s. Last read position: chr22:41,636,603
INFO 2026-06-08 10:14:42 MarkDuplicates Written 620,000,000 records. Elapsed time: 00:18:37s. Time for last 10,000,000: 18s. Last read position: chrX:53,266,795
INFO 2026-06-08 10:15:00 MarkDuplicates Written 630,000,000 records. Elapsed time: 00:18:55s. Time for last 10,000,000: 17s. Last read position: chrX:154,562,779
INFO 2026-06-08 10:15:17 MarkDuplicates Writing complete. Closing input iterator.
INFO 2026-06-08 10:15:17 MarkDuplicates Duplicate Index cleanup.
INFO 2026-06-08 10:15:17 MarkDuplicates Getting Memory Stats.
INFO 2026-06-08 10:15:17 MarkDuplicates Before output close freeMemory: 203957360; totalMemory: 234881024; maxMemory: 127137742848
INFO 2026-06-08 10:15:17 MarkDuplicates Closed outputs. Getting more Memory Stats.
INFO 2026-06-08 10:15:17 MarkDuplicates After output close freeMemory: 104177704; totalMemory: 134217728; maxMemory: 127137742848
[Mon Jun 08 10:15:17 GMT 2026] picard.sam.markduplicates.MarkDuplicates done. Elapsed time: 47.38 minutes.
Runtime.totalMemory()=134217728
Tool returned:
0
ls: *cram: No such file or directory
ls: *.crai: No such file or directory