[W::hts_idx_load3] The index file is older than the data file: 659_bTo-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	401320521
Known Splicing Events:	398247308
Partial Novel Splicing Events:	1610176
Novel Splicing Events:	1331878
Filtered Splicing Events:	131159

Total splicing  Junctions:	586237
Known Splicing Junctions:	275627
Partial Novel Splicing Junctions:	153805
Novel Splicing Junctions:	156805

===================================================================
Create BED file ...
Create Interact file ...