Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1a/f73a0e22861201cc7c5cccf07ed1b4/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a2/6f53d7698ba28c5c6cad2d65ff6e8f/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a2/6f53d7698ba28c5c6cad2d65ff6e8f/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/85/4c58821c404301a6ebc40f9006e4c7/659_bTo-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/79/d59008557cbe3bc28efb8f92e23833/659_bTo-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 401320521
[W::hts_idx_load3] The index file is older than the data file: 659_bTo-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	401320521
Known Splicing Events:	398247308
Partial Novel Splicing Events:	1610176
Novel Splicing Events:	1331878
Filtered Splicing Events:	131159

Total splicing  Junctions:	586237
Known Splicing Junctions:	275627
Partial Novel Splicing Junctions:	153805
Novel Splicing Junctions:	156805

===================================================================
Create BED file ...
Create Interact file ...