Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/06/e34a9236942eef2986538532097d7f/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cb/35bb02ac5ca0b6a75b61a1353b99c8/PX_FFPE_pan_TRNA_nat_01_A23MVY2LT4_1.features.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/06/e34a9236942eef2986538532097d7f/.command.run
==> STAGING COMPLETE (3 inputs)

Predicting contamination for 1 sample(s)...
Detection threshold: VAF_p90 < 0.9999
Level estimation: contamination_pct = -215.87 * vaf_p90 + 215.65

  PX_FFPE_pan_TRNA_nat_01_A23MVY2LT4_1: vaf_p90=1.000000 -> CLEAN

Output saved to: PX_FFPE_pan_TRNA_nat_01_A23MVY2LT4_1.predictions.csv
Summary: 0/1 samples flagged as contaminated