#!/bin/bash
### ---
### name: 'NFCORE_RNAFUSION:RNAFUSION:MULTIQC'
### container: '292967571998.dkr.ecr.us-west-2.amazonaws.com/biocontainers/multiqc:1.21--pyhdfd78af_0'
### outputs:
### - '*multiqc_report.html'
### - '*_data'
### - '*_plots'
### - 'versions.yml'
### ...
set -e
set -u
NXF_DEBUG=${NXF_DEBUG:=0}; [[ $NXF_DEBUG > 1 ]] && set -x
NXF_ENTRY=${1:-nxf_main}

nxf_tree() {
    local pid=$1

    declare -a ALL_CHILDREN
    while read P PP;do
        ALL_CHILDREN[$PP]+=" $P"
    done < <(ps -e -o pid= -o ppid=)

    pstat() {
        local x_pid=$1
        local STATUS=$(2> /dev/null < /proc/$1/status grep -E 'Vm|ctxt')

        if [ $? = 0 ]; then
        local  x_vsz=$(echo "$STATUS" | grep VmSize | awk '{print $2}' || echo -n '0')
        local  x_rss=$(echo "$STATUS" | grep VmRSS | awk '{print $2}' || echo -n '0')
        local x_peak=$(echo "$STATUS" | grep -E 'VmPeak|VmHWM' | sed 's/^.*:\s*//' | sed 's/[\sa-zA-Z]*$//' | tr '\n' ' ' || echo -n '0 0')
        local x_pmem=$(awk -v rss=$x_rss -v mem_tot=$mem_tot 'BEGIN {printf "%.0f", rss/mem_tot*100*10}' || echo -n '0')
        local vol_ctxt=$(echo "$STATUS" | grep '\bvoluntary_ctxt_switches' | awk '{print $2}' || echo -n '0')
        local inv_ctxt=$(echo "$STATUS" | grep '\bnonvoluntary_ctxt_switches' | awk '{print $2}' || echo -n '0')
        cpu_stat[x_pid]="$x_pid $x_pmem $x_vsz $x_rss $x_peak $vol_ctxt $inv_ctxt"
        fi
    }

    pwalk() {
        pstat $1
        for i in ${ALL_CHILDREN[$1]:=}; do pwalk $i; done
    }

    pwalk $1
}

nxf_stat() {
    cpu_stat=()
    nxf_tree $1

    declare -a sum=(0 0 0 0 0 0 0 0)
    local pid
    local i
    for pid in "${!cpu_stat[@]}"; do
        local row=(${cpu_stat[pid]})
        [ $NXF_DEBUG = 1 ] && echo "++ stat mem=${row[*]}"
        for i in "${!row[@]}"; do
        if [ $i != 0 ]; then
            sum[i]=$((sum[i]+row[i]))
        fi
        done
    done

    [ $NXF_DEBUG = 1 ] && echo -e "++ stat SUM=${sum[*]}"

    for i in {1..7}; do
        if [ ${sum[i]} -lt ${cpu_peak[i]} ]; then
            sum[i]=${cpu_peak[i]}
        else
            cpu_peak[i]=${sum[i]}
        fi
    done

    [ $NXF_DEBUG = 1 ] && echo -e "++ stat PEAK=${sum[*]}\n"
    nxf_stat_ret=(${sum[*]})
}

nxf_mem_watch() {
    set -o pipefail
    local pid=$1
    local trace_file=.command.trace
    local count=0;
    declare -a cpu_stat=(0 0 0 0 0 0 0 0)
    declare -a cpu_peak=(0 0 0 0 0 0 0 0)
    local mem_tot=$(< /proc/meminfo grep MemTotal | awk '{print $2}')
    local timeout
    local DONE
    local STOP=''

    [ $NXF_DEBUG = 1 ] && nxf_sleep 0.2 && ps fx

    while true; do
        nxf_stat $pid
        if [ $count -lt 10 ]; then timeout=1;
        elif [ $count -lt 120 ]; then timeout=5;
        else timeout=30;
        fi
        read -t $timeout -r DONE || true
        [[ $DONE ]] && break
        if [ ! -e /proc/$pid ]; then
            [ ! $STOP ] && STOP=$(nxf_date)
            [ $(($(nxf_date)-STOP)) -gt 10000 ] && break
        fi
        count=$((count+1))
    done

    printf "%s\n" \
        "%mem=${nxf_stat_ret[1]}" \
        "vmem=${nxf_stat_ret[2]}" \
        "rss=${nxf_stat_ret[3]}" \
        "peak_vmem=${nxf_stat_ret[4]}" \
        "peak_rss=${nxf_stat_ret[5]}" \
        "vol_ctxt=${nxf_stat_ret[6]}" \
        "inv_ctxt=${nxf_stat_ret[7]}" >> "$trace_file" || >&2 echo "Error: Failed to append to file: $trace_file"
}

nxf_write_trace() {
    printf "%s\n" \
        "nextflow.trace/v2" \
        "realtime=$wall_time" \
        "%cpu=$ucpu" \
        "cpu_model=$cpu_model" \
        "rchar=${io_stat1[0]}" \
        "wchar=${io_stat1[1]}" \
        "syscr=${io_stat1[2]}" \
        "syscw=${io_stat1[3]}" \
        "read_bytes=${io_stat1[4]}" \
        "write_bytes=${io_stat1[5]}" >| "$trace_file" || >&2 echo "Error: Failed to write to file: $trace_file"
}

nxf_trace_mac() {
    local start_millis=$(nxf_date)

    /bin/bash -euo pipefail .command.sh

    local end_millis=$(nxf_date)
    local wall_time=$((end_millis-start_millis))
    local ucpu=''
    local cpu_model=''
    local io_stat1=('' '' '' '' '' '')
    nxf_write_trace
}

nxf_fd() {
    local FD=11
    while [ -e /proc/$$/fd/$FD ]; do FD=$((FD+1)); done
    echo $FD
}

nxf_trace_linux() {
    local pid=$$
    command -v ps &>/dev/null || { >&2 echo "Command 'ps' required by nextflow to collect task metrics cannot be found"; exit 1; }
    local num_cpus=$(< /proc/cpuinfo grep '^processor' -c)
    local cpu_model=$(< /proc/cpuinfo grep '^model name' | head -n 1 | awk 'BEGIN{FS="\t: "} { print $2 }')
    local tot_time0=$(grep '^cpu ' /proc/stat | awk '{sum=$2+$3+$4+$5+$6+$7+$8+$9; printf "%.0f",sum}')
    local cpu_time0=$(2> /dev/null < /proc/$pid/stat awk '{printf "%.0f", ($16+$17)*10 }' || echo -n 'X')
    local io_stat0=($(2> /dev/null < /proc/$pid/io sed 's/^.*:\s*//' | head -n 6 | tr '\n' ' ' || echo -n '0 0 0 0 0 0'))
    local start_millis=$(nxf_date)
    trap 'kill $mem_proc' ERR
    
    /bin/bash -euo pipefail .command.sh &
    local task=$!

    mem_fd=$(nxf_fd)
    eval "exec $mem_fd> >(nxf_mem_watch $task)"
    local mem_proc=$!

    wait $task

    local end_millis=$(nxf_date)
    local tot_time1=$(grep '^cpu ' /proc/stat | awk '{sum=$2+$3+$4+$5+$6+$7+$8+$9; printf "%.0f",sum}')
    local cpu_time1=$(2> /dev/null < /proc/$pid/stat awk '{printf "%.0f", ($16+$17)*10 }' || echo -n 'X')
    local ucpu=$(awk -v p1=$cpu_time1 -v p0=$cpu_time0 -v t1=$tot_time1 -v t0=$tot_time0 -v n=$num_cpus 'BEGIN { pct=(p1-p0)/(t1-t0)*100*n; printf("%.0f", pct>0 ? pct : 0) }' )

    local io_stat1=($(2> /dev/null < /proc/$pid/io sed 's/^.*:\s*//' | head -n 6 | tr '\n' ' ' || echo -n '0 0 0 0 0 0'))
    local i
    for i in {0..5}; do
        io_stat1[i]=$((io_stat1[i]-io_stat0[i]))
    done

    local wall_time=$((end_millis-start_millis))
    [ $NXF_DEBUG = 1 ] && echo "+++ STATS %CPU=$ucpu TIME=$wall_time I/O=${io_stat1[*]}"

    printf "%s\n" \
        "nextflow.trace/v2" \
        "realtime=$wall_time" \
        "%cpu=$ucpu" \
        "cpu_model=$cpu_model" \
        "rchar=${io_stat1[0]}" \
        "wchar=${io_stat1[1]}" \
        "syscr=${io_stat1[2]}" \
        "syscw=${io_stat1[3]}" \
        "read_bytes=${io_stat1[4]}" \
        "write_bytes=${io_stat1[5]}" >| "$trace_file" || >&2 echo "Error: Failed to write to file: $trace_file"

    [ -e /proc/$mem_proc ] && eval "echo 'DONE' >&$mem_fd" || true
    wait $mem_proc 2>/dev/null || true
    while [ -e /proc/$mem_proc ]; do nxf_sleep 0.1; done
}

nxf_trace() {
    local trace_file=.command.trace
    touch $trace_file
    if [[ $(uname) = Darwin ]]; then
        nxf_trace_mac
    else
        nxf_trace_linux
    fi
}
# bash helper functions
nxf_cp_retry() {
    local max_attempts=1
    local timeout=10
    local attempt=0
    local exitCode=0
    while (( $attempt < $max_attempts ))
    do
      if "$@"
        then
          return 0
      else
        exitCode=$?
      fi
      if [[ $exitCode == 0 ]]
      then
        break
      fi
      nxf_sleep $timeout
      attempt=$(( attempt + 1 ))
      timeout=$(( timeout * 2 ))
    done
}

nxf_parallel() {
    IFS=$'\n'
    local cmd=("$@")
    local cpus=$(nproc 2>/dev/null || < /proc/cpuinfo grep '^process' -c)
    local max=$(if (( cpus>4 )); then echo 4; else echo $cpus; fi)
    local i=0
    local pid=()
    (
    set +u
    while ((i<${#cmd[@]})); do
        local copy=()
        for x in "${pid[@]}"; do
          # if the process exist, keep in the 'copy' array, otherwise wait on it to capture the exit code
          # see https://github.com/nextflow-io/nextflow/pull/4050
          [[ -e /proc/$x ]] && copy+=($x) || wait $x
        done
        pid=("${copy[@]}")

        if ((${#pid[@]}>=$max)); then
          nxf_sleep 0.2
        else
          eval "${cmd[$i]}" &
          pid+=($!)
          ((i+=1))
        fi
    done
    for p in "${pid[@]}"; do
        wait $p
    done
    )
    unset IFS
}

# aws helper for s5cmd
nxf_s3_upload() {
    local name=$1
    local s3path=$2
    if [[ "$name" == - ]]; then
      local tmp=$(nxf_mktemp)
      cp /dev/stdin $tmp/$name
      /opt/s5cmd/bin/s5cmd --log error cp --storage-class STANDARD $tmp/$name "$s3path"
    elif [[ -d "$name" ]]; then
      /opt/s5cmd/bin/s5cmd --log error cp --storage-class STANDARD "$name/" "$s3path/$name/"
    else
      /opt/s5cmd/bin/s5cmd --log error cp --storage-class STANDARD "$name" "$s3path/$name"
    fi
}

nxf_s3_download() {
    local source=$1
    local target=$2
    echo "  Downloading: $source"
    local file_name=$(basename $1)
    local is_dir=$(/opt/s5cmd/bin/s5cmd ls $source | grep -F "DIR  ${file_name}/" -c)
    if [[ $is_dir == 1 ]]; then
        /opt/s5cmd/bin/s5cmd --log error cp "$source/*" "$target"
    else
        /opt/s5cmd/bin/s5cmd --log error cp "$source" "$target"
    fi
}

nxf_sleep() {
  sleep $1 2>/dev/null || sleep 1;
}

nxf_date() {
    local ts=$(date +%s%3N);
    if [[ ${#ts} == 10 ]]; then echo ${ts}000
    elif [[ $ts == *%3N ]]; then echo ${ts/\%3N/000}
    elif [[ $ts == *3N ]]; then echo ${ts/3N/000}
    elif [[ ${#ts} == 13 ]]; then echo $ts
    else echo "Unexpected timestamp value: $ts"; exit 1
    fi
}

nxf_env() {
    echo '============= task environment ============='
    env | sort | sed "s/\(.*\)AWS\(.*\)=\(.\{6\}\).*/\1AWS\2=\3xxxxxxxxxxxxx/"
    echo '============= task output =================='
}

nxf_kill() {
    declare -a children
    while read P PP;do
        children[$PP]+=" $P"
    done < <(ps -e -o pid= -o ppid=)

    kill_all() {
        [[ $1 != $$ ]] && kill $1 2>/dev/null || true
        for i in ${children[$1]:=}; do kill_all $i; done
    }

    kill_all $1
}

nxf_mktemp() {
    local base=${1:-/tmp}
    mkdir -p "$base"
    if [[ $(uname) = Darwin ]]; then mktemp -d $base/nxf.XXXXXXXXXX
    else TMPDIR="$base" mktemp -d -t nxf.XXXXXXXXXX
    fi
}

nxf_fs_copy() {
  local source=$1
  local target=$2
  local basedir=$(dirname $1)
  mkdir -p $target/$basedir
  cp -fRL $source $target/$basedir
}

nxf_fs_move() {
  local source=$1
  local target=$2
  local basedir=$(dirname $1)
  mkdir -p $target/$basedir
  mv -f $source $target/$basedir
}

nxf_fs_rsync() {
  rsync -rRl $1 $2
}

nxf_fs_rclone() {
  rclone copyto $1 $2/$1
}

nxf_fs_fcp() {
  fcp $1 $2/$1
}

on_exit() {
    local last_err=$?
    local exit_status=${nxf_main_ret:=0}
    [[ ${exit_status} -eq 0 && ${nxf_unstage_ret:=0} -ne 0 ]] && exit_status=${nxf_unstage_ret:=0}
    [[ ${exit_status} -eq 0 && ${last_err} -ne 0 ]] && exit_status=${last_err}
    printf -- $exit_status | nxf_s3_upload - s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fc/80db6e12666adc41488218e4a89c45/.exitcode || true
    set +u
    rm -rf $NXF_SCRATCH || true
    exit $exit_status
}

on_term() {
    set +e
    [[ "$pid" ]] && nxf_kill $pid
}

nxf_launch() {
    /bin/bash -euo pipefail .command.run nxf_trace
}

nxf_stage() {
    true
    # stage input files
    downloads=(true)
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/54/87eba6a4749c07ca181d77f2d2bde0/659_gK-T1-TRNA-1_A23MVY2LT4_1.Log.final.out 845/659_gK-T1-TRNA-1_A23MVY2LT4_1.Log.final.out")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9f/e33636c621bdf10c2bbd07f0ebe469/659_cRB-T1-TRNA-1_A23MVY2LT4_2.inner_distance_freq.txt 1101/659_cRB-T1-TRNA-1_A23MVY2LT4_2.inner_distance_freq.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/04/697687378e9148962bcb11ff36b010/659_dm4-T1-TRNA-1_A23MVY2LT4_1.Log.final.out 781/659_dm4-T1-TRNA-1_A23MVY2LT4_1.Log.final.out")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/49/d71f149e28376d8967cfb22cb50c53/659_bCu-T1-TRNA-1_A23MVY2LT4_2_contamination_mqc.tsv 1544/659_bCu-T1-TRNA-1_A23MVY2LT4_2_contamination_mqc.tsv")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4d/6126af602a8c052c7d6b76ce7d99b7/659_6i-T1-TRNA-1_A23MVY2LT4_2.fastp.html 11/659_6i-T1-TRNA-1_A23MVY2LT4_2.fastp.html")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2f/d7e18973bcc3713e1e234d65fd217a/PX_FFPE_stm_TRNA_nat_02_A23MVY2LT4_1_1_fastqc.zip 405/PX_FFPE_stm_TRNA_nat_02_A23MVY2LT4_1_1_fastqc.zip")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3b/35589e7482d5b3ea6e6590c5db3051/659_bua-T1-TRNA-1_A23MVY2LT4_2.ReadsPerGene.out.tab 957/659_bua-T1-TRNA-1_A23MVY2LT4_2.ReadsPerGene.out.tab")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/27/9d7dbaedb1bb751f5b1e10a1f50d97/NTC_0001_0001_A23MVY2LT4_1.junction_annotation.log 1155/NTC_0001_0001_A23MVY2LT4_1.junction_annotation.log")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/82/3ab5cb53fa6d418ecfa2e3b2ab9e11/659_cfy-T1-TRNA-1_A23MVY2LT4_1.junction_annotation.log 1225/659_cfy-T1-TRNA-1_A23MVY2LT4_1.junction_annotation.log")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3a/1bd2e616469dce0a0b838ef0d395c1/659_c95-T1-TRNA-1_A23MVY2LT4_1_kallisto_mqc.tsv 346/659_c95-T1-TRNA-1_A23MVY2LT4_1_kallisto_mqc.tsv")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/07/7a43a57cd35cc2654e74ca57bd3360/659_bUW-T1-TRNA-1_A23MVY2LT4_2.junction_annotation.log 1241/659_bUW-T1-TRNA-1_A23MVY2LT4_2.junction_annotation.log")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7c/0ca97d19bc38afed78309eb0db1e78/659_cWx-T1-TRNA-1_A23MVY2LT4_2_combined_fusions_arriba_visualisation.pdf 2358/659_cWx-T1-TRNA-1_A23MVY2LT4_2_combined_fusions_arriba_visualisation.pdf")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bf/822513fc1fd395363c35739fb5b7c8/659_ecd-T1-TRNA-1_A23MVY2LT4_2.ReadsPerGene.out.tab 892/659_ecd-T1-TRNA-1_A23MVY2LT4_2.ReadsPerGene.out.tab")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8f/b109b41803d39ec81fabc30b0c8176/659_6i-T1-TRNA-1_A23MVY2LT4_1.fastp.html 12/659_6i-T1-TRNA-1_A23MVY2LT4_1.fastp.html")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/63/a74a75b443dab7e45a01930abb3ba9/659_Dl-T1-TRNA-1_A23MVY2LT4_1.attempt1.command.log 2034/659_Dl-T1-TRNA-1_A23MVY2LT4_1.attempt1.command.log")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/05/375adc72c3c9103418c092798d30c9/659_Lx-T1-TRNA-1_A23MVY2LT4_2.ReadsPerGene.out.tab 889/659_Lx-T1-TRNA-1_A23MVY2LT4_2.ReadsPerGene.out.tab")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3a/93977f6def2cc1c95eb99958de3b16/659_dcz-T1-TRNA-1_A23MVY2LT4_2.pos.DupRate.xls 1637/659_dcz-T1-TRNA-1_A23MVY2LT4_2.pos.DupRate.xls")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8a/ed1e42443575523590311c0344ee7f/659_Mt-T1-TRNA-1_A23MVY2LT4_1.log 208/659_Mt-T1-TRNA-1_A23MVY2LT4_1.log")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e0/47062375c093433b6de40fb875ad7d/659_cVw-T1-TRNA-1_A23MVY2LT4_1.lc_extrap.txt 2179/659_cVw-T1-TRNA-1_A23MVY2LT4_1.lc_extrap.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/95/5e7079ca75c451a1fb72251ecd8552/659_dES-T1-TRNA-1_A23MVY2LT4_1.attempt1.command.log 2077/659_dES-T1-TRNA-1_A23MVY2LT4_1.attempt1.command.log")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c8/047c1226192fb1a04e3148f6ff3006/659_cIX-T1-TRNA-1_A23MVY2LT4_1_2_fastqc.zip 494/659_cIX-T1-TRNA-1_A23MVY2LT4_1_2_fastqc.zip")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e4/c5493820c6590bb7a9f9c31182856f/659_cfy-T1-TRNA-1_A23MVY2LT4_2_kallisto_mqc.tsv 331/659_cfy-T1-TRNA-1_A23MVY2LT4_2_kallisto_mqc.tsv")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/02/5e55bf29abda2ef410c06b2ed7aa64/659_cTi-T1-TRNA-1_A23MVY2LT4_1_trimmed_2_fastqc.zip 696/659_cTi-T1-TRNA-1_A23MVY2LT4_1_trimmed_2_fastqc.zip")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/31/f08af775424363c01dd3fbb118a6bb/PX_FFPE_stm_TRNA_nat_03_A23MVY2LT4_1.pos.DupRate.xls 1723/PX_FFPE_stm_TRNA_nat_03_A23MVY2LT4_1.pos.DupRate.xls")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8c/402793355c4bc7c22c4a08bc012ebb/659_gK-T1-TRNA-1_A23MVY2LT4_2.ReadsPerGene.out.tab 895/659_gK-T1-TRNA-1_A23MVY2LT4_2.ReadsPerGene.out.tab")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/53/6f3233c9959d75a9788ee7f7288e9c/659_cAd-T1-TRNA-1_A23MVY2LT4_1_combined_fusions_arriba_visualisation.pdf 2361/659_cAd-T1-TRNA-1_A23MVY2LT4_1_combined_fusions_arriba_visualisation.pdf")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/84/fe33839c510599cadd35f5a665ee42/659_bGW-T1-TRNA-1_A23MVY2LT4_2_kallisto_mqc.tsv 375/659_bGW-T1-TRNA-1_A23MVY2LT4_2_kallisto_mqc.tsv")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/da/34aeea1d1e8c9920e0d488219262ff/659_bUW-T1-TRNA-1_A23MVY2LT4_1_contamination_mqc.tsv 1547/659_bUW-T1-TRNA-1_A23MVY2LT4_1_contamination_mqc.tsv")
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    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1c/33fe1cb5c620aacc417ea9adfb86cc/659_c95-T1-TRNA-1_A23MVY2LT4_1_trimmed_2_fastqc.zip 738/659_c95-T1-TRNA-1_A23MVY2LT4_1_trimmed_2_fastqc.zip")
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    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/73/cb6f9c8017b0d0738c122802ef919d/659_cWx-T1-TRNA-1_A23MVY2LT4_1.junctionSaturation_plot.r 1783/659_cWx-T1-TRNA-1_A23MVY2LT4_1.junctionSaturation_plot.r")
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    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/17/5a415bea2f8bfae9b4ba3a46fce875/659_djb-T1-TRNA-1_A23MVY2LT4_2.bam_stat.txt 1291/659_djb-T1-TRNA-1_A23MVY2LT4_2.bam_stat.txt")
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    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/be/172817a03335db3fec8597017a1f56/659_ecd-T1-TRNA-1_A23MVY2LT4_1_seqtool_mqc.tsv 1957/659_ecd-T1-TRNA-1_A23MVY2LT4_1_seqtool_mqc.tsv")
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    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c2/168a91940cd78724ada87048120acf/659_bGW-T1-TRNA-1_A23MVY2LT4_2.read_distribution.txt 1521/659_bGW-T1-TRNA-1_A23MVY2LT4_2.read_distribution.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ca/1e1cb1c73fcdb163679d192f934d6a/659_dm4-T1-TRNA-1_A23MVY2LT4_1.fastp.json 112/659_dm4-T1-TRNA-1_A23MVY2LT4_1.fastp.json")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7b/8fd4d08d41bf5510e0e0ed55afa388/659_gK-T1-TRNA-1_A23MVY2LT4_1_preseq_mqc.tsv 2296/659_gK-T1-TRNA-1_A23MVY2LT4_1_preseq_mqc.tsv")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/eb/278dbc0587caf9289754b02f738df1/659_d01-T1-TRNA-1_A23MVY2LT4_1_kallisto_mqc.tsv 333/659_d01-T1-TRNA-1_A23MVY2LT4_1_kallisto_mqc.tsv")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/81/4151813cb63e9f23549573ef934f1e/659_Mt-T1-TRNA-1_A23MVY2LT4_2.junction_annotation.log 1177/659_Mt-T1-TRNA-1_A23MVY2LT4_2.junction_annotation.log")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1d/51550bb53620ed1e7c17fb2e6fa1f0/659_dc8-T1-TRNA-1_A23MVY2LT4_1.pos.DupRate.xls 1717/659_dc8-T1-TRNA-1_A23MVY2LT4_1.pos.DupRate.xls")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bc/b15947357b79079eee55f498961979/PX_FFPE_gb_TRNA_nat_02_A23MVY2LT4_1.fastp.html 60/PX_FFPE_gb_TRNA_nat_02_A23MVY2LT4_1.fastp.html")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b5/6b96bd8570ea329a9c9d7f6f48691a/PX_FFPE_stm_TRNA_nat_01_A23MVY2LT4_1_preseq_mqc.tsv 2262/PX_FFPE_stm_TRNA_nat_01_A23MVY2LT4_1_preseq_mqc.tsv")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c7/5e87ad9f2b92038a203a50ec5061e2/659_bNS-T1-TRNA-1_A23MVY2LT4_2.Log.final.out 837/659_bNS-T1-TRNA-1_A23MVY2LT4_2.Log.final.out")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/54/e7caf8c2f282e6d0fd54c89f9a0433/659_bNS-T1-TRNA-1_A23MVY2LT4_1_preseq_mqc.tsv 2304/659_bNS-T1-TRNA-1_A23MVY2LT4_1_preseq_mqc.tsv")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5d/80f88a581d16e5286acbc6b2b9a3ba/659_cTi-T1-TRNA-1_A23MVY2LT4_1_seqtool_mqc.tsv 1992/659_cTi-T1-TRNA-1_A23MVY2LT4_1_seqtool_mqc.tsv")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c2/3b8af9e6a373ee4e67a1a26ac66d0b/659_dES-T1-TRNA-1_A23MVY2LT4_2_preseq_mqc.tsv 2301/659_dES-T1-TRNA-1_A23MVY2LT4_2_preseq_mqc.tsv")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a6/714ba9aff1ea96683a8b6e1f07cef0/PX_FFPE_pst_TRNA_nat_02_A23MVY2LT4_1.read_distribution.txt 1461/PX_FFPE_pst_TRNA_nat_02_A23MVY2LT4_1.read_distribution.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/72/15892ad29aa0c9a4966b6041ca9051/659_dm4-T1-TRNA-1_A23MVY2LT4_2_trimmed_2_fastqc.zip 592/659_dm4-T1-TRNA-1_A23MVY2LT4_2_trimmed_2_fastqc.zip")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/95/0014c0f04db607055d3d1a74ebdf7c/659_bNS-T1-TRNA-1_A23MVY2LT4_2.log 288/659_bNS-T1-TRNA-1_A23MVY2LT4_2.log")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fe/0f69084e5364e393beb1df7f21c183/659_6i-T1-TRNA-1_A23MVY2LT4_2.read_distribution.txt 1456/659_6i-T1-TRNA-1_A23MVY2LT4_2.read_distribution.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/26/94dc2fc938baef81bdc11ebf67d1b9/659_djb-T1-TRNA-1_A23MVY2LT4_2.fastp.json 172/659_djb-T1-TRNA-1_A23MVY2LT4_2.fastp.json")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/67/ba703a709902e4347d7ee9a39b7710/659_dm4-T1-TRNA-1_A23MVY2LT4_1.log 204/659_dm4-T1-TRNA-1_A23MVY2LT4_1.log")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ef/10a4ab8a11d566ed15ca3680df7684/659_d01-T1-TRNA-1_A23MVY2LT4_1_1_fastqc.zip 449/659_d01-T1-TRNA-1_A23MVY2LT4_1_1_fastqc.zip")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/39/0c79e54a81242f530b3d284b0660de/PX_FFPE_kid_TRNA_nat_03_A23MVY2LT4_1_1_fastqc.zip 389/PX_FFPE_kid_TRNA_nat_03_A23MVY2LT4_1_1_fastqc.zip")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/87/2d4e1b22feeede8ae5f776fb8a2ab2/659_dcz-T1-TRNA-1_A23MVY2LT4_1.fastp.html 7/659_dcz-T1-TRNA-1_A23MVY2LT4_1.fastp.html")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/14/23e026487751e0a9e12438ae1a4637/659_gK-T1-TRNA-1_A23MVY2LT4_1_1_fastqc.zip 521/659_gK-T1-TRNA-1_A23MVY2LT4_1_1_fastqc.zip")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/68/faec11478bd2a9913190aa662058ea/PX_FFPE_esp_TRNA_nat_02_A23MVY2LT4_1_2_fastqc.zip 484/PX_FFPE_esp_TRNA_nat_02_A23MVY2LT4_1_2_fastqc.zip")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fc/b94dda4bf837e65525ae73412f6c1f/659_ciZ-T1-TRNA-1_A23MVY2LT4_2_trimmed_1_fastqc.zip 667/659_ciZ-T1-TRNA-1_A23MVY2LT4_2_trimmed_1_fastqc.zip")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/72/0bbee6e1bac9d9452064fc4b782d58/659_bCu-T1-TRNA-1_A23MVY2LT4_1.infer_experiment.txt 1001/659_bCu-T1-TRNA-1_A23MVY2LT4_1.infer_experiment.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c8/004eb4c4230e463bca95d5a611d40d/PX_FFPE_stm_TRNA_nat_02_A23MVY2LT4_1_seqtool_mqc.tsv 1935/PX_FFPE_stm_TRNA_nat_02_A23MVY2LT4_1_seqtool_mqc.tsv")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1a/b180b96f5a9fab0705102d3abdbb27/659_dcz-T1-TRNA-1_A23MVY2LT4_2_1_fastqc.zip 391/659_dcz-T1-TRNA-1_A23MVY2LT4_2_1_fastqc.zip")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fb/7437af74185d2f36fa67d64e369549/FFPE_V4_0002_RNA_0006_A23MVY2LT4_1_seqtool_mqc.tsv 1985/FFPE_V4_0002_RNA_0006_A23MVY2LT4_1_seqtool_mqc.tsv")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/10/456cb57c71c24a58767a2e1e13c811/PX_FFPE_kid_TRNA_nat_03_A23MVY2LT4_1.pos.DupRate.xls 1636/PX_FFPE_kid_TRNA_nat_03_A23MVY2LT4_1.pos.DupRate.xls")
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    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c4/173c4409638089e1024ee88b9d7411/659_bQZ-T1-TRNA-1_A23MVY2LT4_1_rseqc_extra_mqc.tsv 1382/659_bQZ-T1-TRNA-1_A23MVY2LT4_1_rseqc_extra_mqc.tsv")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4a/36c990d2a93769dd882acf34e02dfa/659_bNS-T1-TRNA-1_A23MVY2LT4_2.md.bam.metrics 1888/659_bNS-T1-TRNA-1_A23MVY2LT4_2.md.bam.metrics")
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    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ab/0e9eeef231650a110dcc9c35a9b04e/PX_FFPE_esp_TRNA_nat_02_A23MVY2LT4_1.infer_experiment.txt 1026/PX_FFPE_esp_TRNA_nat_02_A23MVY2LT4_1.infer_experiment.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bf/22ed9670066d8df1c244c532997ab7/659_Lx-T1-TRNA-1_A23MVY2LT4_1_kallisto_mqc.tsv 305/659_Lx-T1-TRNA-1_A23MVY2LT4_1_kallisto_mqc.tsv")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f4/a5e0a7928c36f2f114ec3d00a7054f/659_dc8-T1-TRNA-1_A23MVY2LT4_2.inner_distance_freq.txt 1108/659_dc8-T1-TRNA-1_A23MVY2LT4_2.inner_distance_freq.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/38/7d1d0aed33330333ba7606362a42a6/659_dES-T1-TRNA-1_A23MVY2LT4_2.read_distribution.txt 1533/659_dES-T1-TRNA-1_A23MVY2LT4_2.read_distribution.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/dc/d4c161c88fa9c007af6cc7e302c4c9/659_Lx-T1-TRNA-1_A23MVY2LT4_1_trimmed_2_fastqc.zip 612/659_Lx-T1-TRNA-1_A23MVY2LT4_1_trimmed_2_fastqc.zip")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/13/992f12b0159e3ac386734b4e932d51/659_dES-T1-TRNA-1_A23MVY2LT4_2.bam_stat.txt 1317/659_dES-T1-TRNA-1_A23MVY2LT4_2.bam_stat.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/50/4cce5c431b0fc11ae18729f8f7b49d/659_bQZ-T1-TRNA-1_A23MVY2LT4_1.attempt1.command.log 2084/659_bQZ-T1-TRNA-1_A23MVY2LT4_1.attempt1.command.log")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/12/32038e5ec0ce80335ce729959c029b/659_dcz-T1-TRNA-1_A23MVY2LT4_1.log 198/659_dcz-T1-TRNA-1_A23MVY2LT4_1.log")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/89/27cab166eafa9fa299a758b1f54a9d/FFPE_V4_0002_RNA_0006_A23MVY2LT4_1.md.bam.metrics 1886/FFPE_V4_0002_RNA_0006_A23MVY2LT4_1.md.bam.metrics")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fb/6886d875824713d5ee6e9149ac5be8/659_ezg-T1-TRNA-1_A23MVY2LT4_2_trimmed_2_fastqc.zip 748/659_ezg-T1-TRNA-1_A23MVY2LT4_2_trimmed_2_fastqc.zip")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6c/d9ce99301a7596fd3d28e8f26c5f4b/659_cAd-T1-TRNA-1_A23MVY2LT4_2.fastp.html 66/659_cAd-T1-TRNA-1_A23MVY2LT4_2.fastp.html")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/50/9534558b4a895ad06de9b58fef2a86/PX_FFPE_bld_TRNA_nat_04_A23MVY2LT4_1.log 229/PX_FFPE_bld_TRNA_nat_04_A23MVY2LT4_1.log")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d9/053d6c56f10e33d27bf432581967c9/659_bGW-T1-TRNA-1_A23MVY2LT4_1.inner_distance_freq.txt 1114/659_bGW-T1-TRNA-1_A23MVY2LT4_1.inner_distance_freq.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/46/3b83d325c4bf7890040f288c58436c/659_gK-T1-TRNA-1_A23MVY2LT4_1_rseqc_extra_mqc.tsv 1430/659_gK-T1-TRNA-1_A23MVY2LT4_1_rseqc_extra_mqc.tsv")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3f/990cdeee85fcaed55a6f8134613bb0/659_bGc-T1-TRNA-1_A23MVY2LT4_2.junctionSaturation_plot.r 1766/659_bGc-T1-TRNA-1_A23MVY2LT4_2.junctionSaturation_plot.r")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/61/4b37efa99651dcbd46c904b6a38748/659_cWx-T1-TRNA-1_A23MVY2LT4_1.Log.final.out 835/659_cWx-T1-TRNA-1_A23MVY2LT4_1.Log.final.out")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a9/d1fe9fd0b92653b106f6394fbdffcb/659_cAd-T1-TRNA-1_A23MVY2LT4_2_contamination_mqc.tsv 1562/659_cAd-T1-TRNA-1_A23MVY2LT4_2_contamination_mqc.tsv")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c8/5764caa43a98975d3a246e07bb9a69/PX_FFPE_stm_TRNA_nat_03_A23MVY2LT4_1_2_fastqc.zip 578/PX_FFPE_stm_TRNA_nat_03_A23MVY2LT4_1_2_fastqc.zip")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0a/b7114a760e3f70756ad0c11113c45b/659_cAd-T1-TRNA-1_A23MVY2LT4_1_1_fastqc.zip 429/659_cAd-T1-TRNA-1_A23MVY2LT4_1_1_fastqc.zip")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8d/d290c79e51e3cb69a25bbc17de8280/659_cIX-T1-TRNA-1_A23MVY2LT4_2.read_distribution.txt 1511/659_cIX-T1-TRNA-1_A23MVY2LT4_2.read_distribution.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d1/d72962c7628251a8b212b9a8f05d5d/PX_FFPE_bld_TRNA_nat_03_A23MVY2LT4_1_trimmed_2_fastqc.zip 750/PX_FFPE_bld_TRNA_nat_03_A23MVY2LT4_1_trimmed_2_fastqc.zip")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b9/c94e7ba4d74cf053a0d652b96fe41f/659_eHw-T1-TRNA-1_A23MVY2LT4_1.fastp.json 183/659_eHw-T1-TRNA-1_A23MVY2LT4_1.fastp.json")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1f/854033877e9e28806982cdc77de262/659_cAd-T1-TRNA-1_A23MVY2LT4_1_kallisto_mqc.tsv 317/659_cAd-T1-TRNA-1_A23MVY2LT4_1_kallisto_mqc.tsv")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/35/8c959b24e2dd0a1f43f3773d1e2ae1/659_ciJ-T1-TRNA-1_A23MVY2LT4_1.log 276/659_ciJ-T1-TRNA-1_A23MVY2LT4_1.log")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fc/b94dda4bf837e65525ae73412f6c1f/659_ciZ-T1-TRNA-1_A23MVY2LT4_2_trimmed_2_fastqc.zip 668/659_ciZ-T1-TRNA-1_A23MVY2LT4_2_trimmed_2_fastqc.zip")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fb/6886d875824713d5ee6e9149ac5be8/659_ezg-T1-TRNA-1_A23MVY2LT4_2_trimmed_1_fastqc.zip 747/659_ezg-T1-TRNA-1_A23MVY2LT4_2_trimmed_1_fastqc.zip")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/67/5f8b1ca35ab9b34181dbc9024a0a91/PX_FFPE_bld_TRNA_nat_03_A23MVY2LT4_1_kallisto_mqc.tsv 371/PX_FFPE_bld_TRNA_nat_03_A23MVY2LT4_1_kallisto_mqc.tsv")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/62/ea49e47ab25f2f335008133245839d/659_cVw-T1-TRNA-1_A23MVY2LT4_2.lc_extrap.txt 2204/659_cVw-T1-TRNA-1_A23MVY2LT4_2.lc_extrap.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c1/bfaba0e861b30238960cbd5accb344/659_bUW-T1-TRNA-1_A23MVY2LT4_2_trimmed_2_fastqc.zip 760/659_bUW-T1-TRNA-1_A23MVY2LT4_2_trimmed_2_fastqc.zip")
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    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/02/7a2dc04a2fab67d4eb42741339c388/659_bCu-T1-TRNA-1_A23MVY2LT4_2_combined_fusions_arriba_visualisation.pdf 2309/659_bCu-T1-TRNA-1_A23MVY2LT4_2_combined_fusions_arriba_visualisation.pdf")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ee/5ab8977b0b4e63cc573cf3e7203c66/659_cfy-T1-TRNA-1_A23MVY2LT4_2.infer_experiment.txt 1017/659_cfy-T1-TRNA-1_A23MVY2LT4_2.infer_experiment.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1c/33fe1cb5c620aacc417ea9adfb86cc/659_c95-T1-TRNA-1_A23MVY2LT4_1_trimmed_1_fastqc.zip 737/659_c95-T1-TRNA-1_A23MVY2LT4_1_trimmed_1_fastqc.zip")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0c/cd0509708a7f38701820925c0d89fd/659_cRB-T1-TRNA-1_A23MVY2LT4_2.infer_experiment.txt 1008/659_cRB-T1-TRNA-1_A23MVY2LT4_2.infer_experiment.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/79/ec168a48c026ad928ef876173ee8b2/659_dcz-T1-TRNA-1_A23MVY2LT4_1.inner_distance_freq.txt 1062/659_dcz-T1-TRNA-1_A23MVY2LT4_1.inner_distance_freq.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bf/27f8703e5f36c0d74d23baceb035f8/659_cAd-T1-TRNA-1_A23MVY2LT4_2.bam_stat.txt 1287/659_cAd-T1-TRNA-1_A23MVY2LT4_2.bam_stat.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ec/bbcbdbcb1668a275068e082a9871d0/659_cIX-T1-TRNA-1_A23MVY2LT4_1.attempt2.command.log 2082/659_cIX-T1-TRNA-1_A23MVY2LT4_1.attempt2.command.log")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/21/e5c1b53d771db81547195447666580/PX_FFPE_bld_TRNA_nat_02_A23MVY2LT4_1.read_distribution.txt 1510/PX_FFPE_bld_TRNA_nat_02_A23MVY2LT4_1.read_distribution.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/41/805725ec9c403daffd87a76d38bbdb/659_ciJ-T1-TRNA-1_A23MVY2LT4_2_preseq_mqc.tsv 2271/659_ciJ-T1-TRNA-1_A23MVY2LT4_2_preseq_mqc.tsv")
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    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a1/320f76f69ed8bdb697e11084b8a4a6/659_dts-T1-TRNA-1_A23MVY2LT4_2.junction_annotation.log 1208/659_dts-T1-TRNA-1_A23MVY2LT4_2.junction_annotation.log")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/87/62be24dc39b6383e08084e82339c07/659_bhK-T1-TRNA-1_A23MVY2LT4_1_trimmed_2_fastqc.zip 726/659_bhK-T1-TRNA-1_A23MVY2LT4_1_trimmed_2_fastqc.zip")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ce/1b0fb86b0220af96a4e177facbe97a/PX_FFPE_pan_TRNA_nat_01_A23MVY2LT4_1.bam_stat.txt 1270/PX_FFPE_pan_TRNA_nat_01_A23MVY2LT4_1.bam_stat.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/09/f2d82db8454903710dae07480d707f/659_cIX-T1-TRNA-1_A23MVY2LT4_2.junction_annotation.log 1198/659_cIX-T1-TRNA-1_A23MVY2LT4_2.junction_annotation.log")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/23/ab64a89a6215e834a97834d8217c04/659_cIX-T1-TRNA-1_A23MVY2LT4_2_seqtool_mqc.tsv 2015/659_cIX-T1-TRNA-1_A23MVY2LT4_2_seqtool_mqc.tsv")
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    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ae/630536984ee069889652f80324fb26/659_Dl-T1-TRNA-1_A23MVY2LT4_2.md.bam.metrics 1836/659_Dl-T1-TRNA-1_A23MVY2LT4_2.md.bam.metrics")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d7/ec781b9106a0ecd7faab40bf128131/PX_FFPE_kid_TRNA_nat_01_A23MVY2LT4_1.ReadsPerGene.out.tab 871/PX_FFPE_kid_TRNA_nat_01_A23MVY2LT4_1.ReadsPerGene.out.tab")
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    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/01/f68b119d37c015691aa4116bfb99fe/659_rd-T1-TRNA-1_A23MVY2LT4_1_preseq_mqc.tsv 2228/659_rd-T1-TRNA-1_A23MVY2LT4_1_preseq_mqc.tsv")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/eb/7e2cf9f7f1c542109bdebfcd21d9a9/659_ezg-T1-TRNA-1_A23MVY2LT4_1.fastp.json 175/659_ezg-T1-TRNA-1_A23MVY2LT4_1.fastp.json")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/68/d618ea0acc77819cb2017017978068/659_dts-T1-TRNA-1_A23MVY2LT4_2_combined_fusions_arriba_visualisation.pdf 2334/659_dts-T1-TRNA-1_A23MVY2LT4_2_combined_fusions_arriba_visualisation.pdf")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a3/292b0463a36ac814652ca6c99e9fcb/PX_FFPE_kid_TRNA_nat_01_A23MVY2LT4_1.inner_distance_freq.txt 1063/PX_FFPE_kid_TRNA_nat_01_A23MVY2LT4_1.inner_distance_freq.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e4/c8c1ac7765ba8f1235b7c3e76a6f5b/659_buD-T1-TRNA-1_A23MVY2LT4_2.read_distribution.txt 1460/659_buD-T1-TRNA-1_A23MVY2LT4_2.read_distribution.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d0/ccebab75d7e089188d14cf3ad92873/PX_FFPE_bld_TRNA_nat_02_A23MVY2LT4_1.ReadsPerGene.out.tab 928/PX_FFPE_bld_TRNA_nat_02_A23MVY2LT4_1.ReadsPerGene.out.tab")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/50/7fa668b9a209dd5a00db9dc9777f4a/659_cRB-T1-TRNA-1_A23MVY2LT4_1_rseqc_extra_mqc.tsv 1369/659_cRB-T1-TRNA-1_A23MVY2LT4_1_rseqc_extra_mqc.tsv")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/01/6f5ea9d7a79793e77ab0b10a03fed0/PX_FFPE_kid_TRNA_nat_01_A23MVY2LT4_1.md.bam.metrics 1831/PX_FFPE_kid_TRNA_nat_01_A23MVY2LT4_1.md.bam.metrics")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d6/26b065c0301e669c293ed2203a7bca/659_epP-T1-TRNA-1_A23MVY2LT4_1_trimmed_1_fastqc.zip 769/659_epP-T1-TRNA-1_A23MVY2LT4_1_trimmed_1_fastqc.zip")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c3/dad8894ef8ed56e9fa4a8d49d92fef/659_djb-T1-TRNA-1_A23MVY2LT4_1.pos.DupRate.xls 1653/659_djb-T1-TRNA-1_A23MVY2LT4_1.pos.DupRate.xls")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4e/4a3c5df2f728949e5e1603a66655be/659_gK-T1-TRNA-1_A23MVY2LT4_2.log 254/659_gK-T1-TRNA-1_A23MVY2LT4_2.log")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fe/60341eaacb2c6d40dd8664cfa1fd3b/659_bTo-T1-TRNA-1_A23MVY2LT4_2_trimmed_1_fastqc.zip 661/659_bTo-T1-TRNA-1_A23MVY2LT4_2_trimmed_1_fastqc.zip")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8b/e2bf0454f6f8af0b2a7d3ea59b515c/PX_FFPE_stm_TRNA_nat_01_A23MVY2LT4_1.read_distribution.txt 1504/PX_FFPE_stm_TRNA_nat_01_A23MVY2LT4_1.read_distribution.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8d/adc10ce26c21ccbbcc210b9aecffff/659_buD-T1-TRNA-1_A23MVY2LT4_2.pos.DupRate.xls 1659/659_buD-T1-TRNA-1_A23MVY2LT4_2.pos.DupRate.xls")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c7/56b2e884b791f7251da1ad2f108a99/659_bTo-T1-TRNA-1_A23MVY2LT4_1.md.bam.metrics 1893/659_bTo-T1-TRNA-1_A23MVY2LT4_1.md.bam.metrics")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f1/85418cf2318d5d5ba4dc29302fe186/PX_FFPE_pst_TRNA_nat_02_A23MVY2LT4_1.ReadsPerGene.out.tab 885/PX_FFPE_pst_TRNA_nat_02_A23MVY2LT4_1.ReadsPerGene.out.tab")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d9/178254841e9bde7091a102f6156aea/PX_FFPE_gb_TRNA_nat_02_A23MVY2LT4_1_kallisto_mqc.tsv 353/PX_FFPE_gb_TRNA_nat_02_A23MVY2LT4_1_kallisto_mqc.tsv")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/da/8c6015174a548f1008e61271ad1248/659_6i-T1-TRNA-1_A23MVY2LT4_2.md.bam.metrics 1838/659_6i-T1-TRNA-1_A23MVY2LT4_2.md.bam.metrics")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/30/91ce9c9dcc6a06bb411abc9563ac32/PX_FFPE_stm_TRNA_nat_03_A23MVY2LT4_1.inner_distance_freq.txt 1148/PX_FFPE_stm_TRNA_nat_03_A23MVY2LT4_1.inner_distance_freq.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/18/7fbcc0235fcb3fa0b9ffb792cbf4f6/659_cVw-T1-TRNA-1_A23MVY2LT4_1_combined_fusions_arriba_visualisation.pdf 2354/659_cVw-T1-TRNA-1_A23MVY2LT4_1_combined_fusions_arriba_visualisation.pdf")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f5/d6a897c49bec0f56e57c0f0f419387/659_dcz-T1-TRNA-1_A23MVY2LT4_2.log 197/659_dcz-T1-TRNA-1_A23MVY2LT4_2.log")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d9/66af4e217b228ed8e2c0f026a0671b/659_ciJ-T1-TRNA-1_A23MVY2LT4_1.inner_distance_freq.txt 1123/659_ciJ-T1-TRNA-1_A23MVY2LT4_1.inner_distance_freq.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1a/bd645e8fb9cc142bd351a051473ae9/659_dc8-T1-TRNA-1_A23MVY2LT4_1.bam_stat.txt 1336/659_dc8-T1-TRNA-1_A23MVY2LT4_1.bam_stat.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6d/f7eff2546185e9e1bc7746549530d6/659_bGW-T1-TRNA-1_A23MVY2LT4_2.fastp.json 157/659_bGW-T1-TRNA-1_A23MVY2LT4_2.fastp.json")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/87/2a5c86de14812e6d749de9cb4dd2b6/PX_FFPE_stm_TRNA_nat_03_A23MVY2LT4_1.bam_stat.txt 1331/PX_FFPE_stm_TRNA_nat_03_A23MVY2LT4_1.bam_stat.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c1/3e3b3f619943728b8afaf7157fbac2/659_bGc-T1-TRNA-1_A23MVY2LT4_1_1_fastqc.zip 505/659_bGc-T1-TRNA-1_A23MVY2LT4_1_1_fastqc.zip")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c9/94aaf123cc128d3fff202157acf9db/659_bua-T1-TRNA-1_A23MVY2LT4_1_contamination_mqc.tsv 1575/659_bua-T1-TRNA-1_A23MVY2LT4_1_contamination_mqc.tsv")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6e/955e1a1028bcdba8362bcd72e1da39/659_Lx-T1-TRNA-1_A23MVY2LT4_1.fastp.json 114/659_Lx-T1-TRNA-1_A23MVY2LT4_1.fastp.json")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c5/f5a2cc6b55c0c8a3652d0e19b52d50/659_c95-T1-TRNA-1_A23MVY2LT4_2_contamination_mqc.tsv 1609/659_c95-T1-TRNA-1_A23MVY2LT4_2_contamination_mqc.tsv")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1c/e4f5380e628ba726d7178fc53aa1a7/PX_FFPE_kid_TRNA_nat_03_A23MVY2LT4_1_preseq_mqc.tsv 2212/PX_FFPE_kid_TRNA_nat_03_A23MVY2LT4_1_preseq_mqc.tsv")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ee/d59bfaf19b4cda07af57a6d0c44c4e/PX_FFPE_gb_TRNA_nat_02_A23MVY2LT4_1.read_distribution.txt 1513/PX_FFPE_gb_TRNA_nat_02_A23MVY2LT4_1.read_distribution.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/89/f8a57a60e1c36755a12edf4e867237/PX_FFPE_kid_TRNA_nat_03_A23MVY2LT4_1_kallisto_mqc.tsv 292/PX_FFPE_kid_TRNA_nat_03_A23MVY2LT4_1_kallisto_mqc.tsv")
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    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/87/e0c636be37f9e454b614bdfefd2b67/PX_FFPE_stm_TRNA_nat_02_A23MVY2LT4_1_preseq_mqc.tsv 2223/PX_FFPE_stm_TRNA_nat_02_A23MVY2LT4_1_preseq_mqc.tsv")
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    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/83/23096d95d2a4158938e4b55e8011c4/659_eHw-T1-TRNA-1_A23MVY2LT4_2.lc_extrap.txt 2189/659_eHw-T1-TRNA-1_A23MVY2LT4_2.lc_extrap.txt")
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    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/31/3034aa9fd331b49bce72580299240f/PX_FFPE_gb_TRNA_nat_02_A23MVY2LT4_1_combined_fusions_arriba_visualisation.pdf 2349/PX_FFPE_gb_TRNA_nat_02_A23MVY2LT4_1_combined_fusions_arriba_visualisation.pdf")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/21/c9295a2dd524ac788c0b6facc6234b/659_cRa-T1-TRNA-1_A23MVY2LT4_2_combined_fusions_arriba_visualisation.pdf 2374/659_cRa-T1-TRNA-1_A23MVY2LT4_2_combined_fusions_arriba_visualisation.pdf")
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    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/82/b433b5da91deff6f9f6f49b02c96ce/659_bCu-T1-TRNA-1_A23MVY2LT4_1_combined_fusions_arriba_visualisation.pdf 2324/659_bCu-T1-TRNA-1_A23MVY2LT4_1_combined_fusions_arriba_visualisation.pdf")
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    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1b/b401429c3c2ce90a16b74cdbb66ef3/659_ciJ-T1-TRNA-1_A23MVY2LT4_2.fastp.json 182/659_ciJ-T1-TRNA-1_A23MVY2LT4_2.fastp.json")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3c/9be13c331f8b6f0f00df70cece3d96/659_ezg-T1-TRNA-1_A23MVY2LT4_2.infer_experiment.txt 1033/659_ezg-T1-TRNA-1_A23MVY2LT4_2.infer_experiment.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/72/99267d4b917c0aac62d427f78c248c/659_ezg-T1-TRNA-1_A23MVY2LT4_2.attempt1.command.log 2095/659_ezg-T1-TRNA-1_A23MVY2LT4_2.attempt1.command.log")
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    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c1/bfaba0e861b30238960cbd5accb344/659_bUW-T1-TRNA-1_A23MVY2LT4_2_trimmed_1_fastqc.zip 759/659_bUW-T1-TRNA-1_A23MVY2LT4_2_trimmed_1_fastqc.zip")
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    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ba/f374d62095705ad5a20b4b298013e9/659_bGW-T1-TRNA-1_A23MVY2LT4_2_rseqc_extra_mqc.tsv 1437/659_bGW-T1-TRNA-1_A23MVY2LT4_2_rseqc_extra_mqc.tsv")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bf/9cc76b3526cd6ed63350dd503537a3/659_rd-T1-TRNA-1_A23MVY2LT4_1.infer_experiment.txt 980/659_rd-T1-TRNA-1_A23MVY2LT4_1.infer_experiment.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/db/255c738e002eceaabc0db21654ab15/659_bUW-T1-TRNA-1_A23MVY2LT4_2.lc_extrap.txt 2192/659_bUW-T1-TRNA-1_A23MVY2LT4_2.lc_extrap.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0d/08673ee12ee6a0211e830547e14205/659_bCu-T1-TRNA-1_A23MVY2LT4_1.Log.final.out 810/659_bCu-T1-TRNA-1_A23MVY2LT4_1.Log.final.out")
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    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/06/cf9c50e723da689ad28b52861b502c/659_dcz-T1-TRNA-1_A23MVY2LT4_1_kallisto_mqc.tsv 294/659_dcz-T1-TRNA-1_A23MVY2LT4_1_kallisto_mqc.tsv")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d1/23ffa44efea83c54eed6bd46e300aa/659_c95-T1-TRNA-1_A23MVY2LT4_2_trimmed_2_fastqc.zip 658/659_c95-T1-TRNA-1_A23MVY2LT4_2_trimmed_2_fastqc.zip")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5c/09acdad9d13f8b0d621a5772970dee/PX_FFPE_stm_TRNA_nat_01_A23MVY2LT4_1.Log.final.out 848/PX_FFPE_stm_TRNA_nat_01_A23MVY2LT4_1.Log.final.out")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/39/a2dbcfe22f5368844c5362ef4e27c7/PX_FFPE_pan_TRNA_nat_02_A23MVY2LT4_1.read_distribution.txt 1464/PX_FFPE_pan_TRNA_nat_02_A23MVY2LT4_1.read_distribution.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b7/dc65bb3ac862bdd86299365d7aa921/659_bQZ-T1-TRNA-1_A23MVY2LT4_1.junctionSaturation_plot.r 1776/659_bQZ-T1-TRNA-1_A23MVY2LT4_1.junctionSaturation_plot.r")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/97/49f60e4fb9020b75a391ba2c0e02e4/PX_FFPE_gb_TRNA_nat_02_A23MVY2LT4_1.infer_experiment.txt 1018/PX_FFPE_gb_TRNA_nat_02_A23MVY2LT4_1.infer_experiment.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/84/1efcc87fe73e899af9399838bee480/659_cIX-T1-TRNA-1_A23MVY2LT4_1_rseqc_extra_mqc.tsv 1409/659_cIX-T1-TRNA-1_A23MVY2LT4_1_rseqc_extra_mqc.tsv")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e6/223dcc037113e11e6ebddc9b24fa94/659_bGW-T1-TRNA-1_A23MVY2LT4_2_trimmed_1_fastqc.zip 683/659_bGW-T1-TRNA-1_A23MVY2LT4_2_trimmed_1_fastqc.zip")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/73/a111c7261a1b2ec3c63264f4b2af52/659_cVw-T1-TRNA-1_A23MVY2LT4_2_seqtool_mqc.tsv 1989/659_cVw-T1-TRNA-1_A23MVY2LT4_2_seqtool_mqc.tsv")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5e/e5f83ca627bb91307d129971d89752/PX_FFPE_bld_TRNA_nat_04_A23MVY2LT4_1.fastp.html 59/PX_FFPE_bld_TRNA_nat_04_A23MVY2LT4_1.fastp.html")
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    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/22/6f69cb8e0b13f7441b82150c0d4014/659_bUW-T1-TRNA-1_A23MVY2LT4_2_1_fastqc.zip 477/659_bUW-T1-TRNA-1_A23MVY2LT4_2_1_fastqc.zip")
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    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8a/5d7040d6beed214e0bc2ff23bf74b8/659_djb-T1-TRNA-1_A23MVY2LT4_2.junction_annotation.log 1196/659_djb-T1-TRNA-1_A23MVY2LT4_2.junction_annotation.log")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/05/375adc72c3c9103418c092798d30c9/659_Lx-T1-TRNA-1_A23MVY2LT4_2.Log.final.out 793/659_Lx-T1-TRNA-1_A23MVY2LT4_2.Log.final.out")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/68/802ab56d568b78b759f3e94fe65b85/659_bGW-T1-TRNA-1_A23MVY2LT4_2.log 279/659_bGW-T1-TRNA-1_A23MVY2LT4_2.log")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/94/7bc61ed8b909a37af041824756b1ae/659_cWx-T1-TRNA-1_A23MVY2LT4_2.md.bam.metrics 1877/659_cWx-T1-TRNA-1_A23MVY2LT4_2.md.bam.metrics")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c2/8281b7f3062b79ec9086f7a6cfb509/659_bGc-T1-TRNA-1_A23MVY2LT4_2_1_fastqc.zip 535/659_bGc-T1-TRNA-1_A23MVY2LT4_2_1_fastqc.zip")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/63/6b53c7f094c8433d1bda045865e8af/659_Lx-T1-TRNA-1_A23MVY2LT4_2.inner_distance_freq.txt 1086/659_Lx-T1-TRNA-1_A23MVY2LT4_2.inner_distance_freq.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fd/37aa7f60532f6ec03c25f20fd2285c/659_Mt-T1-TRNA-1_A23MVY2LT4_1.bam_stat.txt 1264/659_Mt-T1-TRNA-1_A23MVY2LT4_1.bam_stat.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7f/91087ee24dbd539e33b8065666d716/659_cRa-T1-TRNA-1_A23MVY2LT4_1.log 259/659_cRa-T1-TRNA-1_A23MVY2LT4_1.log")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/22/3c862eeae88d5521dc5d5516c9ae51/PX_FFPE_bld_TRNA_nat_02_A23MVY2LT4_1_combined_fusions_arriba_visualisation.pdf 2337/PX_FFPE_bld_TRNA_nat_02_A23MVY2LT4_1_combined_fusions_arriba_visualisation.pdf")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c4/eb2df924669745afb06b798e7d7222/PX_FFPE_bld_TRNA_nat_01_A23MVY2LT4_1.junctionSaturation_plot.r 1808/PX_FFPE_bld_TRNA_nat_01_A23MVY2LT4_1.junctionSaturation_plot.r")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/39/3d7c756af77069174a3710078c6251/659_bhK-T1-TRNA-1_A23MVY2LT4_2.pos.DupRate.xls 1711/659_bhK-T1-TRNA-1_A23MVY2LT4_2.pos.DupRate.xls")
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    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d4/b33023d3fce0ceb2d3a4035231bd78/659_eHw-T1-TRNA-1_A23MVY2LT4_1_trimmed_2_fastqc.zip 742/659_eHw-T1-TRNA-1_A23MVY2LT4_1_trimmed_2_fastqc.zip")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/66/46bc4b74ca1dca0feed481e58e9431/659_cTi-T1-TRNA-1_A23MVY2LT4_2.junctionSaturation_plot.r 1819/659_cTi-T1-TRNA-1_A23MVY2LT4_2.junctionSaturation_plot.r")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/62/a3b7752b528c85ff251cb8a48ee1df/PX_FFPE_gb_TRNA_nat_01_A23MVY2LT4_1_seqtool_mqc.tsv 1952/PX_FFPE_gb_TRNA_nat_01_A23MVY2LT4_1_seqtool_mqc.tsv")
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    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0b/a94407a1bb1fafcb47147c56b2cf79/PX_FFPE_stm_TRNA_nat_01_A23MVY2LT4_1.inner_distance_freq.txt 1133/PX_FFPE_stm_TRNA_nat_01_A23MVY2LT4_1.inner_distance_freq.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cd/0c1b610587e3ae2e933f2a1b18f7f9/PX_FFPE_pst_TRNA_nat_02_A23MVY2LT4_1_combined_fusions_arriba_visualisation.pdf 2335/PX_FFPE_pst_TRNA_nat_02_A23MVY2LT4_1_combined_fusions_arriba_visualisation.pdf")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4a/900c087f8894e898ebf7582ac3368d/659_dts-T1-TRNA-1_A23MVY2LT4_2_seqtool_mqc.tsv 1980/659_dts-T1-TRNA-1_A23MVY2LT4_2_seqtool_mqc.tsv")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/05/fb9c3b8e2e394a6ae11afaaa2d17a9/659_cIX-T1-TRNA-1_A23MVY2LT4_1_contamination_mqc.tsv 1587/659_cIX-T1-TRNA-1_A23MVY2LT4_1_contamination_mqc.tsv")
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    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f8/7f3dad89c06cc1b85065de3f72a9bd/659_bQZ-T1-TRNA-1_A23MVY2LT4_2_combined_fusions_arriba_visualisation.pdf 2393/659_bQZ-T1-TRNA-1_A23MVY2LT4_2_combined_fusions_arriba_visualisation.pdf")
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    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0e/cd3bb537362828bc67050981571aac/PX_FFPE_bld_TRNA_nat_03_A23MVY2LT4_1.lc_extrap.txt 2164/PX_FFPE_bld_TRNA_nat_03_A23MVY2LT4_1.lc_extrap.txt")
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    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5e/8ce4a3b6283a674cd7645829a5d084/659_dcz-T1-TRNA-1_A23MVY2LT4_1.attempt1.command.log 2022/659_dcz-T1-TRNA-1_A23MVY2LT4_1.attempt1.command.log")
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    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b6/eef4a32e22f8bbf9fe86c380c6a00e/659_cVw-T1-TRNA-1_A23MVY2LT4_1_kallisto_mqc.tsv 366/659_cVw-T1-TRNA-1_A23MVY2LT4_1_kallisto_mqc.tsv")
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    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b8/aaff0d0b62210444bb841466e44fe0/659_eHw-T1-TRNA-1_A23MVY2LT4_1_preseq_mqc.tsv 2279/659_eHw-T1-TRNA-1_A23MVY2LT4_1_preseq_mqc.tsv")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/dc/279b2deeec56456310e3b98bef7651/659_bTo-T1-TRNA-1_A23MVY2LT4_1.inner_distance_freq.txt 1130/659_bTo-T1-TRNA-1_A23MVY2LT4_1.inner_distance_freq.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3f/8c4c905d74074d414aaba04f26c45e/659_cTi-T1-TRNA-1_A23MVY2LT4_1.log 247/659_cTi-T1-TRNA-1_A23MVY2LT4_1.log")
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    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/48/aae7f813bfd5e5d80aecfba693414b/659_djb-T1-TRNA-1_A23MVY2LT4_2.md.bam.metrics 1868/659_djb-T1-TRNA-1_A23MVY2LT4_2.md.bam.metrics")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/50/4a49bc7aea7fedb339cfe5728268cc/PX_FFPE_pan_TRNA_nat_02_A23MVY2LT4_1_seqtool_mqc.tsv 1940/PX_FFPE_pan_TRNA_nat_02_A23MVY2LT4_1_seqtool_mqc.tsv")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e2/d8c9fc4e24ae91f0d2edb4340d4b63/659_cRB-T1-TRNA-1_A23MVY2LT4_1_2_fastqc.zip 444/659_cRB-T1-TRNA-1_A23MVY2LT4_1_2_fastqc.zip")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/92/a5972a3fd1ff62fb61535e60715f32/659_ezg-T1-TRNA-1_A23MVY2LT4_2.pos.DupRate.xls 1702/659_ezg-T1-TRNA-1_A23MVY2LT4_2.pos.DupRate.xls")
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    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0e/67807a231e9d3c2bb027ec0db2d857/659_cTi-T1-TRNA-1_A23MVY2LT4_1_preseq_mqc.tsv 2268/659_cTi-T1-TRNA-1_A23MVY2LT4_1_preseq_mqc.tsv")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5b/6fd5122e78df23e4731b8583b4a505/659_dm4-T1-TRNA-1_A23MVY2LT4_2.fastp.json 106/659_dm4-T1-TRNA-1_A23MVY2LT4_2.fastp.json")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ea/9cdafdefe2787e4a4cb58978336896/659_epP-T1-TRNA-1_A23MVY2LT4_2_trimmed_1_fastqc.zip 697/659_epP-T1-TRNA-1_A23MVY2LT4_2_trimmed_1_fastqc.zip")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/61/8aa18984885c4cf59c4a2172fa76b0/659_gK-T1-TRNA-1_A23MVY2LT4_2_contamination_mqc.tsv 1600/659_gK-T1-TRNA-1_A23MVY2LT4_2_contamination_mqc.tsv")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cf/f0066f578a1b2db443f86435b5c61e/659_eHw-T1-TRNA-1_A23MVY2LT4_1.ReadsPerGene.out.tab 947/659_eHw-T1-TRNA-1_A23MVY2LT4_1.ReadsPerGene.out.tab")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ce/295dca3b0137679aeb5bec39c20d79/659_bhK-T1-TRNA-1_A23MVY2LT4_2.lc_extrap.txt 2206/659_bhK-T1-TRNA-1_A23MVY2LT4_2.lc_extrap.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/56/1e30a70045cd3f5f42d210b946ec7d/659_eHw-T1-TRNA-1_A23MVY2LT4_2.md.bam.metrics 1908/659_eHw-T1-TRNA-1_A23MVY2LT4_2.md.bam.metrics")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/09/540ef889ff8f4fc275b78bf3405bbf/659_epP-T1-TRNA-1_A23MVY2LT4_2.attempt1.command.log 2105/659_epP-T1-TRNA-1_A23MVY2LT4_2.attempt1.command.log")
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    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b9/447138ed6d81bec7292036723590cc/659_ecd-T1-TRNA-1_A23MVY2LT4_1_contamination_mqc.tsv 1566/659_ecd-T1-TRNA-1_A23MVY2LT4_1_contamination_mqc.tsv")
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    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/81/75509791c44f1527403a11d44f8cce/659_dc8-T1-TRNA-1_A23MVY2LT4_2_2_fastqc.zip 500/659_dc8-T1-TRNA-1_A23MVY2LT4_2_2_fastqc.zip")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7e/5e4501f9c881566d560c584bc96473/659_ciJ-T1-TRNA-1_A23MVY2LT4_1_rseqc_extra_mqc.tsv 1397/659_ciJ-T1-TRNA-1_A23MVY2LT4_1_rseqc_extra_mqc.tsv")
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    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/00/f36d75c72b7b83a263bf9d5bad4874/659_bCu-T1-TRNA-1_A23MVY2LT4_1_2_fastqc.zip 424/659_bCu-T1-TRNA-1_A23MVY2LT4_1_2_fastqc.zip")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/af/1ca78049c6f742fd1f729479a18987/659_epP-T1-TRNA-1_A23MVY2LT4_1.junctionSaturation_plot.r 1807/659_epP-T1-TRNA-1_A23MVY2LT4_1.junctionSaturation_plot.r")
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    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4a/bebbacf65c1e7159985821d9ac3d26/659_bNS-T1-TRNA-1_A23MVY2LT4_2.attempt1.command.log 2074/659_bNS-T1-TRNA-1_A23MVY2LT4_2.attempt1.command.log")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/02/9cbe17b2ac9ade32ea1aff31fad6e7/659_ciJ-T1-TRNA-1_A23MVY2LT4_2.pos.DupRate.xls 1698/659_ciJ-T1-TRNA-1_A23MVY2LT4_2.pos.DupRate.xls")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d5/4820ef76ad017a6478ebda66790296/PX_FFPE_bld_TRNA_nat_01_A23MVY2LT4_1.log 248/PX_FFPE_bld_TRNA_nat_01_A23MVY2LT4_1.log")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/87/8b059957d8be665c46916e088d1bf0/PX_FFPE_gb_TRNA_nat_01_A23MVY2LT4_1_kallisto_mqc.tsv 316/PX_FFPE_gb_TRNA_nat_01_A23MVY2LT4_1_kallisto_mqc.tsv")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8d/0a86fb1a2a319c7d30972c20ace647/659_djb-T1-TRNA-1_A23MVY2LT4_1.junction_annotation.log 1170/659_djb-T1-TRNA-1_A23MVY2LT4_1.junction_annotation.log")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/18/ec65b19441ac8d88006813d1f1e647/659_Lx-T1-TRNA-1_A23MVY2LT4_2_seqtool_mqc.tsv 1947/659_Lx-T1-TRNA-1_A23MVY2LT4_2_seqtool_mqc.tsv")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/63/8c1d998825bddc4d87e4f246bcfc92/659_ecd-T1-TRNA-1_A23MVY2LT4_1_combined_fusions_arriba_visualisation.pdf 2382/659_ecd-T1-TRNA-1_A23MVY2LT4_1_combined_fusions_arriba_visualisation.pdf")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/43/c4fa8ad201d4ae4b80f1892b936ead/659_bGW-T1-TRNA-1_A23MVY2LT4_1.fastp.html 34/659_bGW-T1-TRNA-1_A23MVY2LT4_1.fastp.html")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/26/c596a31b13ae47274c1a67cc52e9ad/PX_FFPE_pan_TRNA_nat_03_A23MVY2LT4_1_2_fastqc.zip 486/PX_FFPE_pan_TRNA_nat_03_A23MVY2LT4_1_2_fastqc.zip")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/15/0d44baeef2a729265f37c02c1337a3/659_bhK-T1-TRNA-1_A23MVY2LT4_1.md.bam.metrics 1922/659_bhK-T1-TRNA-1_A23MVY2LT4_1.md.bam.metrics")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/68/c70ec5f949565a1bc029510b607834/659_bTo-T1-TRNA-1_A23MVY2LT4_1.lc_extrap.txt 2176/659_bTo-T1-TRNA-1_A23MVY2LT4_1.lc_extrap.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/19/58508ce5220ef8822f289d6aac15b2/PX_FFPE_esp_TRNA_nat_02_A23MVY2LT4_1.fastp.json 154/PX_FFPE_esp_TRNA_nat_02_A23MVY2LT4_1.fastp.json")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8e/2b0b32d2d50cbf6462df2534158b65/NTC_0001_0001_A23MVY2LT4_1.md.bam.metrics 1827/NTC_0001_0001_A23MVY2LT4_1.md.bam.metrics")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e6/3f8f92cb4a940827eb5b38111e6c78/659_cRB-T1-TRNA-1_A23MVY2LT4_1.junctionSaturation_plot.r 1760/659_cRB-T1-TRNA-1_A23MVY2LT4_1.junctionSaturation_plot.r")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c2/4e848f5775b3ad11295ce75d1a3581/659_epP-T1-TRNA-1_A23MVY2LT4_1_1_fastqc.zip 565/659_epP-T1-TRNA-1_A23MVY2LT4_1_1_fastqc.zip")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3c/c425d4f00c63a27b7dc422b6ca66d5/PX_FFPE_bld_TRNA_nat_04_A23MVY2LT4_1.inner_distance_freq.txt 1098/PX_FFPE_bld_TRNA_nat_04_A23MVY2LT4_1.inner_distance_freq.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9e/f5cef2a2e69cef944044b78215f93e/PX_FFPE_bld_TRNA_nat_02_A23MVY2LT4_1.junction_annotation.log 1224/PX_FFPE_bld_TRNA_nat_02_A23MVY2LT4_1.junction_annotation.log")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/70/98494d22ff0803cb47324ef6012e6a/659_eHw-T1-TRNA-1_A23MVY2LT4_1.junctionSaturation_plot.r 1809/659_eHw-T1-TRNA-1_A23MVY2LT4_1.junctionSaturation_plot.r")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4f/f6024dea049e82f602df1e07e1d9c2/659_cWx-T1-TRNA-1_A23MVY2LT4_2.bam_stat.txt 1307/659_cWx-T1-TRNA-1_A23MVY2LT4_2.bam_stat.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/32/7f0250be43c63bde8affebc6b6a70d/659_ecd-T1-TRNA-1_A23MVY2LT4_2.attempt1.command.log 2044/659_ecd-T1-TRNA-1_A23MVY2LT4_2.attempt1.command.log")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/dc/f52fddeccb3a6f5d945faef36f8e75/PX_FFPE_pst_TRNA_nat_02_A23MVY2LT4_1.fastp.html 98/PX_FFPE_pst_TRNA_nat_02_A23MVY2LT4_1.fastp.html")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/82/aa07a46a319c3959a402c706fadac6/659_cRB-T1-TRNA-1_A23MVY2LT4_1.lc_extrap.txt 2137/659_cRB-T1-TRNA-1_A23MVY2LT4_1.lc_extrap.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5b/39a828eee91733cff69011eb6674b2/659_eHw-T1-TRNA-1_A23MVY2LT4_1_1_fastqc.zip 563/659_eHw-T1-TRNA-1_A23MVY2LT4_1_1_fastqc.zip")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c0/a8731ad2e1a3d8fb454c40ce41532f/659_Mt-T1-TRNA-1_A23MVY2LT4_2_contamination_mqc.tsv 1561/659_Mt-T1-TRNA-1_A23MVY2LT4_2_contamination_mqc.tsv")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8e/dcbcd20494058c40162afdc0590e2b/659_cAd-T1-TRNA-1_A23MVY2LT4_1.lc_extrap.txt 2139/659_cAd-T1-TRNA-1_A23MVY2LT4_1.lc_extrap.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/19/ba29237b19a48bd0059774177ae6f4/659_dc8-T1-TRNA-1_A23MVY2LT4_2.attempt2.command.log 2073/659_dc8-T1-TRNA-1_A23MVY2LT4_2.attempt2.command.log")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ae/7856656fa5629069d2665cfb5b932c/659_Mt-T1-TRNA-1_A23MVY2LT4_1.Log.final.out 784/659_Mt-T1-TRNA-1_A23MVY2LT4_1.Log.final.out")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ff/5b7beb69f39ee55851c9b6bd4700fc/PX_FFPE_gb_TRNA_nat_02_A23MVY2LT4_1.inner_distance_freq.txt 1115/PX_FFPE_gb_TRNA_nat_02_A23MVY2LT4_1.inner_distance_freq.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1c/bf8b4a9274ee4a7c23aa8d55a775c1/659_djb-T1-TRNA-1_A23MVY2LT4_1_trimmed_2_fastqc.zip 640/659_djb-T1-TRNA-1_A23MVY2LT4_1_trimmed_2_fastqc.zip")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/06/f3e3aa7946fef9436f9216114c45cf/659_bQZ-T1-TRNA-1_A23MVY2LT4_2.infer_experiment.txt 1045/659_bQZ-T1-TRNA-1_A23MVY2LT4_2.infer_experiment.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/81/2700e08b30cfe33c57e0a1fc31f787/659_bhK-T1-TRNA-1_A23MVY2LT4_2.bam_stat.txt 1340/659_bhK-T1-TRNA-1_A23MVY2LT4_2.bam_stat.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a8/d4961b601fe169dae656bfceb7863a/659_bGc-T1-TRNA-1_A23MVY2LT4_1.pos.DupRate.xls 1692/659_bGc-T1-TRNA-1_A23MVY2LT4_1.pos.DupRate.xls")
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    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/70/5c735364ebd7f83eb110c7a7e910e6/659_cRa-T1-TRNA-1_A23MVY2LT4_2_2_fastqc.zip 572/659_cRa-T1-TRNA-1_A23MVY2LT4_2_2_fastqc.zip")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/55/69d4c0fe303715117735da01c925af/FFPE_V4_0002_RNA_0006_A23MVY2LT4_1.fastp.json 187/FFPE_V4_0002_RNA_0006_A23MVY2LT4_1.fastp.json")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/67/fe928e6d14d229a62b9f0d44613c91/659_ciJ-T1-TRNA-1_A23MVY2LT4_2.ReadsPerGene.out.tab 936/659_ciJ-T1-TRNA-1_A23MVY2LT4_2.ReadsPerGene.out.tab")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f8/6eabe41080b6d268d694ff8f3acb9f/659_cRB-T1-TRNA-1_A23MVY2LT4_1.inner_distance_freq.txt 1095/659_cRB-T1-TRNA-1_A23MVY2LT4_1.inner_distance_freq.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/74/6a2d6adffa3e2f7d717833bf287a54/659_cVw-T1-TRNA-1_A23MVY2LT4_1.read_distribution.txt 1469/659_cVw-T1-TRNA-1_A23MVY2LT4_1.read_distribution.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e6/97a0a5ea1328d382f26651a84c88f6/659_dc8-T1-TRNA-1_A23MVY2LT4_2_preseq_mqc.tsv 2265/659_dc8-T1-TRNA-1_A23MVY2LT4_2_preseq_mqc.tsv")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c2/9d26fae4f1e26bd4e4291ff363a619/PX_FFPE_bld_TRNA_nat_04_A23MVY2LT4_1_trimmed_1_fastqc.zip 681/PX_FFPE_bld_TRNA_nat_04_A23MVY2LT4_1_trimmed_1_fastqc.zip")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f9/ead09cd53b1e8f538782fdcf1cec06/659_buD-T1-TRNA-1_A23MVY2LT4_1_rseqc_extra_mqc.tsv 1375/659_buD-T1-TRNA-1_A23MVY2LT4_1_rseqc_extra_mqc.tsv")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e0/fe7566140e86f2fe5313e65518dee0/659_bTo-T1-TRNA-1_A23MVY2LT4_1_trimmed_2_fastqc.zip 744/659_bTo-T1-TRNA-1_A23MVY2LT4_1_trimmed_2_fastqc.zip")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5d/7a9331736d6c02756922e03968252d/PX_FFPE_kid_TRNA_nat_01_A23MVY2LT4_1.junctionSaturation_plot.r 1735/PX_FFPE_kid_TRNA_nat_01_A23MVY2LT4_1.junctionSaturation_plot.r")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/19/58b85f08fd13810ac883e59faa056a/659_d01-T1-TRNA-1_A23MVY2LT4_1_preseq_mqc.tsv 2246/659_d01-T1-TRNA-1_A23MVY2LT4_1_preseq_mqc.tsv")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/56/fa78c7813610657312be0a9f1895ec/659_Lx-T1-TRNA-1_A23MVY2LT4_1_2_fastqc.zip 420/659_Lx-T1-TRNA-1_A23MVY2LT4_1_2_fastqc.zip")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/dc/92482f34132f19d9942348ae2e12ff/659_cAd-T1-TRNA-1_A23MVY2LT4_2.ReadsPerGene.out.tab 893/659_cAd-T1-TRNA-1_A23MVY2LT4_2.ReadsPerGene.out.tab")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4f/e447ea05ff463c648e58326047943b/659_dts-T1-TRNA-1_A23MVY2LT4_1.attempt1.command.log 2042/659_dts-T1-TRNA-1_A23MVY2LT4_1.attempt1.command.log")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/06/645db9124ee996c42dfc85ac844748/659_dts-T1-TRNA-1_A23MVY2LT4_1.fastp.html 38/659_dts-T1-TRNA-1_A23MVY2LT4_1.fastp.html")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fc/f186b00dda7260384dbeedd3613df8/659_ecd-T1-TRNA-1_A23MVY2LT4_1.log 222/659_ecd-T1-TRNA-1_A23MVY2LT4_1.log")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c1/3e3b3f619943728b8afaf7157fbac2/659_bGc-T1-TRNA-1_A23MVY2LT4_1_2_fastqc.zip 506/659_bGc-T1-TRNA-1_A23MVY2LT4_1_2_fastqc.zip")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9e/0841b95df4cccee3c12cec783b84bb/659_rd-T1-TRNA-1_A23MVY2LT4_1.bam_stat.txt 1267/659_rd-T1-TRNA-1_A23MVY2LT4_1.bam_stat.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f8/31bd6c4a4391cd36fb14f42448289d/659_cRa-T1-TRNA-1_A23MVY2LT4_1.lc_extrap.txt 2196/659_cRa-T1-TRNA-1_A23MVY2LT4_1.lc_extrap.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e7/d60180d25a3f78acfee5169751d510/PX_FFPE_pan_TRNA_nat_01_A23MVY2LT4_1.junctionSaturation_plot.r 1755/PX_FFPE_pan_TRNA_nat_01_A23MVY2LT4_1.junctionSaturation_plot.r")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/11/5f69613099b00e4e4aa65a8cacaf59/PX_FFPE_bld_TRNA_nat_04_A23MVY2LT4_1.md.bam.metrics 1870/PX_FFPE_bld_TRNA_nat_04_A23MVY2LT4_1.md.bam.metrics")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/30/b4c2858db2ccacd4dcb0989376e532/PX_FFPE_pst_TRNA_nat_02_A23MVY2LT4_1_2_fastqc.zip 460/PX_FFPE_pst_TRNA_nat_02_A23MVY2LT4_1_2_fastqc.zip")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a1/01b618f47d1ebccde768c3b0ab20e5/659_bQZ-T1-TRNA-1_A23MVY2LT4_2.read_distribution.txt 1528/659_bQZ-T1-TRNA-1_A23MVY2LT4_2.read_distribution.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b2/60c3a6cd329c64524af417c40e6011/PX_FFPE_stm_TRNA_nat_01_A23MVY2LT4_1.pos.DupRate.xls 1707/PX_FFPE_stm_TRNA_nat_01_A23MVY2LT4_1.pos.DupRate.xls")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c3/c25ace358c9739f0bad88c236efc41/659_djb-T1-TRNA-1_A23MVY2LT4_1_rseqc_extra_mqc.tsv 1367/659_djb-T1-TRNA-1_A23MVY2LT4_1_rseqc_extra_mqc.tsv")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5f/b8e4976ed785e8e3e229a229b8654e/659_Lx-T1-TRNA-1_A23MVY2LT4_2.bam_stat.txt 1297/659_Lx-T1-TRNA-1_A23MVY2LT4_2.bam_stat.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d4/c399a84320798d424390df4d1586ee/FFPE_HD789_01_RNA_13_A23MVY2LT4_1.pos.DupRate.xls 1676/FFPE_HD789_01_RNA_13_A23MVY2LT4_1.pos.DupRate.xls")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e5/8ba1e70fdc1a49d170b56e5221337c/659_dts-T1-TRNA-1_A23MVY2LT4_1_trimmed_1_fastqc.zip 647/659_dts-T1-TRNA-1_A23MVY2LT4_1_trimmed_1_fastqc.zip")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f6/9df9d264d718896f33f903abd7e955/NTC_0001_0001_A23MVY2LT4_1.log 195/NTC_0001_0001_A23MVY2LT4_1.log")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/43/d3ed6c9d233ce25b7295176e720744/PX_FFPE_gb_TRNA_nat_01_A23MVY2LT4_1.junctionSaturation_plot.r 1765/PX_FFPE_gb_TRNA_nat_01_A23MVY2LT4_1.junctionSaturation_plot.r")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/48/a272b087693d51974d47d04993c95d/PX_FFPE_kid_TRNA_nat_02_A23MVY2LT4_1.md.bam.metrics 1851/PX_FFPE_kid_TRNA_nat_02_A23MVY2LT4_1.md.bam.metrics")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/70/6f584db2bae4ae8475231005027719/659_bhK-T1-TRNA-1_A23MVY2LT4_2_kallisto_mqc.tsv 342/659_bhK-T1-TRNA-1_A23MVY2LT4_2_kallisto_mqc.tsv")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/70/5e9ab702ff4b0c46c79d137fc95b95/659_dts-T1-TRNA-1_A23MVY2LT4_1.Log.final.out 791/659_dts-T1-TRNA-1_A23MVY2LT4_1.Log.final.out")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/08/feb85aa0e100ff67a1d3991a0f84e7/659_eHw-T1-TRNA-1_A23MVY2LT4_2.fastp.json 153/659_eHw-T1-TRNA-1_A23MVY2LT4_2.fastp.json")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c4/b22980eb8170f9f80db0c724f7964e/659_cIX-T1-TRNA-1_A23MVY2LT4_1.md.bam.metrics 1872/659_cIX-T1-TRNA-1_A23MVY2LT4_1.md.bam.metrics")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/de/cd8f7f21a15f957ddabad358c15a79/659_buD-T1-TRNA-1_A23MVY2LT4_2_preseq_mqc.tsv 2227/659_buD-T1-TRNA-1_A23MVY2LT4_2_preseq_mqc.tsv")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1e/a239a5ab84a3b47c5fe7c637c2be65/659_bUW-T1-TRNA-1_A23MVY2LT4_2.fastp.json 179/659_bUW-T1-TRNA-1_A23MVY2LT4_2.fastp.json")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1e/25d495ba24bc3806f20cc22b9124f7/659_bNS-T1-TRNA-1_A23MVY2LT4_2.read_distribution.txt 1491/659_bNS-T1-TRNA-1_A23MVY2LT4_2.read_distribution.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/39/0ec5250d0a7a9d6d87f8fbca91132a/659_Lx-T1-TRNA-1_A23MVY2LT4_1.pos.DupRate.xls 1647/659_Lx-T1-TRNA-1_A23MVY2LT4_1.pos.DupRate.xls")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/20/276b8b6fb2e87551b9f2f8f4eb06e6/659_bua-T1-TRNA-1_A23MVY2LT4_2_combined_fusions_arriba_visualisation.pdf 2388/659_bua-T1-TRNA-1_A23MVY2LT4_2_combined_fusions_arriba_visualisation.pdf")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/24/e8c3640241091352bcab5da3f1fa7d/659_c95-T1-TRNA-1_A23MVY2LT4_2.bam_stat.txt 1319/659_c95-T1-TRNA-1_A23MVY2LT4_2.bam_stat.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f7/21c6b51db4e930f95b05bd1b1fcb1c/659_dES-T1-TRNA-1_A23MVY2LT4_1.fastp.json 133/659_dES-T1-TRNA-1_A23MVY2LT4_1.fastp.json")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2f/6b8bc528a4aa9232ad90a2c673ff18/659_ezg-T1-TRNA-1_A23MVY2LT4_1_combined_fusions_arriba_visualisation.pdf 2376/659_ezg-T1-TRNA-1_A23MVY2LT4_1_combined_fusions_arriba_visualisation.pdf")
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    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4c/f746ea03f487114551957b210b2d3d/659_bNS-T1-TRNA-1_A23MVY2LT4_1.fastp.json 158/659_bNS-T1-TRNA-1_A23MVY2LT4_1.fastp.json")
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    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d3/95f7a52dd1a0100ab3e2ce66ef07ca/659_ciZ-T1-TRNA-1_A23MVY2LT4_2.md.bam.metrics 1863/659_ciZ-T1-TRNA-1_A23MVY2LT4_2.md.bam.metrics")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/80/41988b24fc5c38b423be0385520a4f/659_cVw-T1-TRNA-1_A23MVY2LT4_2_combined_fusions_arriba_visualisation.pdf 2352/659_cVw-T1-TRNA-1_A23MVY2LT4_2_combined_fusions_arriba_visualisation.pdf")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fd/ec37c868ae87d102333da3405834af/659_ciZ-T1-TRNA-1_A23MVY2LT4_2.Log.final.out 808/659_ciZ-T1-TRNA-1_A23MVY2LT4_2.Log.final.out")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5e/6b8690cb41ef5309cefb21cab3b577/659_bNS-T1-TRNA-1_A23MVY2LT4_2_2_fastqc.zip 488/659_bNS-T1-TRNA-1_A23MVY2LT4_2_2_fastqc.zip")
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    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ef/ff048fb8c367946dbd61ab4c9d73d2/659_ciJ-T1-TRNA-1_A23MVY2LT4_2_seqtool_mqc.tsv 1988/659_ciJ-T1-TRNA-1_A23MVY2LT4_2_seqtool_mqc.tsv")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/65/193a6e902b9198662a077164074fcf/659_buD-T1-TRNA-1_A23MVY2LT4_1.fastp.html 97/659_buD-T1-TRNA-1_A23MVY2LT4_1.fastp.html")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/dd/a3169f3c6df86797d3339d4a890227/659_cWx-T1-TRNA-1_A23MVY2LT4_1.attempt1.command.log 2106/659_cWx-T1-TRNA-1_A23MVY2LT4_1.attempt1.command.log")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5a/8689c5a06841e7e02195ed8b52bfcd/659_ciZ-T1-TRNA-1_A23MVY2LT4_2_kallisto_mqc.tsv 360/659_ciZ-T1-TRNA-1_A23MVY2LT4_2_kallisto_mqc.tsv")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/00/2f0f26bca1a9c44e694094d88ab825/659_c95-T1-TRNA-1_A23MVY2LT4_2.read_distribution.txt 1506/659_c95-T1-TRNA-1_A23MVY2LT4_2.read_distribution.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/21/22b6133418881adb67241d74da0e1d/PX_FFPE_kid_TRNA_nat_03_A23MVY2LT4_1_trimmed_1_fastqc.zip 581/PX_FFPE_kid_TRNA_nat_03_A23MVY2LT4_1_trimmed_1_fastqc.zip")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7d/776eb2737d993f7207131ae354284e/659_bCu-T1-TRNA-1_A23MVY2LT4_2_trimmed_1_fastqc.zip 587/659_bCu-T1-TRNA-1_A23MVY2LT4_2_trimmed_1_fastqc.zip")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/79/e6a7d9663fa46cfb6c82d16fc6a03b/659_rd-T1-TRNA-1_A23MVY2LT4_2_seqtool_mqc.tsv 1996/659_rd-T1-TRNA-1_A23MVY2LT4_2_seqtool_mqc.tsv")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/49/51245fe44ac7ff1f52b5e094f5a41f/659_bGW-T1-TRNA-1_A23MVY2LT4_2.Log.final.out 858/659_bGW-T1-TRNA-1_A23MVY2LT4_2.Log.final.out")
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    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ea/9d269cf2c010b4b66b67a291fd88e4/659_gK-T1-TRNA-1_A23MVY2LT4_1.inner_distance_freq.txt 1129/659_gK-T1-TRNA-1_A23MVY2LT4_1.inner_distance_freq.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5c/490b52e23996dd8e222a51beecff2b/659_ciJ-T1-TRNA-1_A23MVY2LT4_2.attempt1.command.log 2078/659_ciJ-T1-TRNA-1_A23MVY2LT4_2.attempt1.command.log")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f8/670a2fce7d0f8ec7f27ca4dee39a7b/PX_FFPE_gb_TRNA_nat_01_A23MVY2LT4_1.inner_distance_freq.txt 1093/PX_FFPE_gb_TRNA_nat_01_A23MVY2LT4_1.inner_distance_freq.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d9/6b87791cb1924b6d5960b8c1a89ea2/PX_FFPE_esp_TRNA_nat_02_A23MVY2LT4_1.pos.DupRate.xls 1697/PX_FFPE_esp_TRNA_nat_02_A23MVY2LT4_1.pos.DupRate.xls")
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    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8a/a8d71037f5a5d8ceb59b0ebdf0164a/659_cAd-T1-TRNA-1_A23MVY2LT4_1.junctionSaturation_plot.r 1757/659_cAd-T1-TRNA-1_A23MVY2LT4_1.junctionSaturation_plot.r")
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    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/33/348ec2b7bab2d4af8b1b7268b677d8/659_djb-T1-TRNA-1_A23MVY2LT4_1_contamination_mqc.tsv 1558/659_djb-T1-TRNA-1_A23MVY2LT4_1_contamination_mqc.tsv")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7c/2d50fb44bcae1caef2b80a4896b07e/659_bhK-T1-TRNA-1_A23MVY2LT4_1_preseq_mqc.tsv 2306/659_bhK-T1-TRNA-1_A23MVY2LT4_1_preseq_mqc.tsv")
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    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/78/95369682f4638bc003c5eda7057934/659_cfy-T1-TRNA-1_A23MVY2LT4_1_kallisto_mqc.tsv 385/659_cfy-T1-TRNA-1_A23MVY2LT4_1_kallisto_mqc.tsv")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4e/ae5a5289c82d8fe1272bdf1e365c5b/PX_FFPE_bld_TRNA_nat_03_A23MVY2LT4_1.bam_stat.txt 1337/PX_FFPE_bld_TRNA_nat_03_A23MVY2LT4_1.bam_stat.txt")
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    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/66/cf767c6cc9f07b8c723d694e2b4dc0/PX_FFPE_stm_TRNA_nat_02_A23MVY2LT4_1_trimmed_1_fastqc.zip 597/PX_FFPE_stm_TRNA_nat_02_A23MVY2LT4_1_trimmed_1_fastqc.zip")
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    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c0/1c5016314197a2243705ba33796a69/659_cIX-T1-TRNA-1_A23MVY2LT4_1_seqtool_mqc.tsv 1972/659_cIX-T1-TRNA-1_A23MVY2LT4_1_seqtool_mqc.tsv")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ea/816840e2ce95dfb21719ba48709b6b/659_ezg-T1-TRNA-1_A23MVY2LT4_1_rseqc_extra_mqc.tsv 1435/659_ezg-T1-TRNA-1_A23MVY2LT4_1_rseqc_extra_mqc.tsv")
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    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/92/17a87d951a933b202ca3b7dc86977b/659_bGW-T1-TRNA-1_A23MVY2LT4_2.inner_distance_freq.txt 1145/659_bGW-T1-TRNA-1_A23MVY2LT4_2.inner_distance_freq.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/67/5dae4ac96d85986b29f8af27cae7c4/PX_FFPE_pan_TRNA_nat_02_A23MVY2LT4_1.ReadsPerGene.out.tab 897/PX_FFPE_pan_TRNA_nat_02_A23MVY2LT4_1.ReadsPerGene.out.tab")
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    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b3/07cd19eda5b0c8529131c0c412a3c1/659_cTi-T1-TRNA-1_A23MVY2LT4_1_rseqc_extra_mqc.tsv 1422/659_cTi-T1-TRNA-1_A23MVY2LT4_1_rseqc_extra_mqc.tsv")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b0/b0dc19dce026c70f4abdc5996e4a2f/659_bNS-T1-TRNA-1_A23MVY2LT4_1.pos.DupRate.xls 1708/659_bNS-T1-TRNA-1_A23MVY2LT4_1.pos.DupRate.xls")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fa/38887185aaeeeb8875c6d0151af9e2/659_ecd-T1-TRNA-1_A23MVY2LT4_1_rseqc_extra_mqc.tsv 1385/659_ecd-T1-TRNA-1_A23MVY2LT4_1_rseqc_extra_mqc.tsv")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cf/e7de574719b43e3faf21ee99c22cc7/659_bGc-T1-TRNA-1_A23MVY2LT4_1_combined_fusions_arriba_visualisation.pdf 2355/659_bGc-T1-TRNA-1_A23MVY2LT4_1_combined_fusions_arriba_visualisation.pdf")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1e/b01e1b023ea6065565183239c56c74/659_cTi-T1-TRNA-1_A23MVY2LT4_2.ReadsPerGene.out.tab 958/659_cTi-T1-TRNA-1_A23MVY2LT4_2.ReadsPerGene.out.tab")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c8/4d4ee31c71d4d760dd98debba1995e/659_rd-T1-TRNA-1_A23MVY2LT4_2.infer_experiment.txt 1037/659_rd-T1-TRNA-1_A23MVY2LT4_2.infer_experiment.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cd/d441e5573b033f64d49ae9af4283d0/FFPE_HD789_01_RNA_13_A23MVY2LT4_1_trimmed_1_fastqc.zip 635/FFPE_HD789_01_RNA_13_A23MVY2LT4_1_trimmed_1_fastqc.zip")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/37/93c0aaed4edafd18984e72c2edd7b5/659_cfy-T1-TRNA-1_A23MVY2LT4_2.md.bam.metrics 1876/659_cfy-T1-TRNA-1_A23MVY2LT4_2.md.bam.metrics")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4a/b40b86f2172c7b9aed8b9d5dd927f5/NTC_0001_0001_A23MVY2LT4_1.attempt1.command.log 2019/NTC_0001_0001_A23MVY2LT4_1.attempt1.command.log")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cc/5bd31faa2a01e3900ffff1d01a4923/659_gK-T1-TRNA-1_A23MVY2LT4_2_preseq_mqc.tsv 2245/659_gK-T1-TRNA-1_A23MVY2LT4_2_preseq_mqc.tsv")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/dd/10072f94abb3d44f97d36f2d02a484/659_6i-T1-TRNA-1_A23MVY2LT4_2_rseqc_extra_mqc.tsv 1357/659_6i-T1-TRNA-1_A23MVY2LT4_2_rseqc_extra_mqc.tsv")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/09/e3887cb261238e5254392b82eae2b4/PX_FFPE_bld_TRNA_nat_02_A23MVY2LT4_1_trimmed_2_fastqc.zip 644/PX_FFPE_bld_TRNA_nat_02_A23MVY2LT4_1_trimmed_2_fastqc.zip")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f3/7855941d91afb10b848aaf6d8982f3/659_bTo-T1-TRNA-1_A23MVY2LT4_2_rseqc_extra_mqc.tsv 1429/659_bTo-T1-TRNA-1_A23MVY2LT4_2_rseqc_extra_mqc.tsv")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/de/ee5d9e21496a809f18f61462f25ad3/659_c95-T1-TRNA-1_A23MVY2LT4_1_rseqc_extra_mqc.tsv 1424/659_c95-T1-TRNA-1_A23MVY2LT4_1_rseqc_extra_mqc.tsv")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f3/52ef973b4e6f7553f70056742559ca/659_bhK-T1-TRNA-1_A23MVY2LT4_1.read_distribution.txt 1538/659_bhK-T1-TRNA-1_A23MVY2LT4_1.read_distribution.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/31/a86f12f4ea28ab701a1a70bc24c170/659_Lx-T1-TRNA-1_A23MVY2LT4_2.fastp.json 121/659_Lx-T1-TRNA-1_A23MVY2LT4_2.fastp.json")
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    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/88/d022bb89e70631e15c359f5566ccdf/659_gK-T1-TRNA-1_A23MVY2LT4_1.junctionSaturation_plot.r 1803/659_gK-T1-TRNA-1_A23MVY2LT4_1.junctionSaturation_plot.r")
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    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e3/cbc9100d39dfc5dc1e4b507ac1a431/PX_FFPE_bld_TRNA_nat_01_A23MVY2LT4_1_rseqc_extra_mqc.tsv 1411/PX_FFPE_bld_TRNA_nat_01_A23MVY2LT4_1_rseqc_extra_mqc.tsv")
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    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7b/7fbf39f997dee10f904d6b6cec2eb6/659_ezg-T1-TRNA-1_A23MVY2LT4_1_2_fastqc.zip 498/659_ezg-T1-TRNA-1_A23MVY2LT4_1_2_fastqc.zip")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c7/82f738022615aa031658827234ffcf/659_ezg-T1-TRNA-1_A23MVY2LT4_1_seqtool_mqc.tsv 2009/659_ezg-T1-TRNA-1_A23MVY2LT4_1_seqtool_mqc.tsv")
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    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bc/b15947357b79079eee55f498961979/PX_FFPE_gb_TRNA_nat_02_A23MVY2LT4_1.fastp.json 156/PX_FFPE_gb_TRNA_nat_02_A23MVY2LT4_1.fastp.json")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ea/ab21391e2670ca83a7f630ffe6f15e/659_dcz-T1-TRNA-1_A23MVY2LT4_1_seqtool_mqc.tsv 1926/659_dcz-T1-TRNA-1_A23MVY2LT4_1_seqtool_mqc.tsv")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1c/643c81bc90e46b4cb4763d06278b68/PX_FFPE_bld_TRNA_nat_01_A23MVY2LT4_1.Log.final.out 854/PX_FFPE_bld_TRNA_nat_01_A23MVY2LT4_1.Log.final.out")
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    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/dd/f4c3f6b7e357ca2d08caf28c1eb63e/PX_FFPE_stm_TRNA_nat_02_A23MVY2LT4_1.bam_stat.txt 1263/PX_FFPE_stm_TRNA_nat_02_A23MVY2LT4_1.bam_stat.txt")
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    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/88/4a644e32850822f22a0913f1c5ae53/659_epP-T1-TRNA-1_A23MVY2LT4_1.bam_stat.txt 1323/659_epP-T1-TRNA-1_A23MVY2LT4_1.bam_stat.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/49/51245fe44ac7ff1f52b5e094f5a41f/659_bGW-T1-TRNA-1_A23MVY2LT4_2.ReadsPerGene.out.tab 954/659_bGW-T1-TRNA-1_A23MVY2LT4_2.ReadsPerGene.out.tab")
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    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b7/8281cedc0cd650ab3fbfe00fbc807b/659_d01-T1-TRNA-1_A23MVY2LT4_2.md.bam.metrics 1852/659_d01-T1-TRNA-1_A23MVY2LT4_2.md.bam.metrics")
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    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e1/2160abb3a396c3a86107b682fa32ff/659_cAd-T1-TRNA-1_A23MVY2LT4_2.junction_annotation.log 1193/659_cAd-T1-TRNA-1_A23MVY2LT4_2.junction_annotation.log")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d6/7b15c489812d587071c3c7bd9b9fb9/659_cRB-T1-TRNA-1_A23MVY2LT4_2.pos.DupRate.xls 1677/659_cRB-T1-TRNA-1_A23MVY2LT4_2.pos.DupRate.xls")
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    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/26/c596a31b13ae47274c1a67cc52e9ad/PX_FFPE_pan_TRNA_nat_03_A23MVY2LT4_1_1_fastqc.zip 485/PX_FFPE_pan_TRNA_nat_03_A23MVY2LT4_1_1_fastqc.zip")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/20/a45b07e6cb74690ead157388c05962/PX_FFPE_pan_TRNA_nat_02_A23MVY2LT4_1.pos.DupRate.xls 1654/PX_FFPE_pan_TRNA_nat_02_A23MVY2LT4_1.pos.DupRate.xls")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d2/6154c73ab953b054c8e39b5666d195/FFPE_V4_0002_RNA_0006_A23MVY2LT4_1_combined_fusions_arriba_visualisation.pdf 2340/FFPE_V4_0002_RNA_0006_A23MVY2LT4_1_combined_fusions_arriba_visualisation.pdf")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b3/b0b317ab8a11e4f611756478a65a8f/659_epP-T1-TRNA-1_A23MVY2LT4_1.infer_experiment.txt 1042/659_epP-T1-TRNA-1_A23MVY2LT4_1.infer_experiment.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/79/55fe2bb6d9d640321c4e9880086ed2/659_bCu-T1-TRNA-1_A23MVY2LT4_2_2_fastqc.zip 394/659_bCu-T1-TRNA-1_A23MVY2LT4_2_2_fastqc.zip")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/74/5f1e503182eee5c7f2c431a4494a9f/FFPE_V4_0002_RNA_0006_A23MVY2LT4_1_trimmed_1_fastqc.zip 735/FFPE_V4_0002_RNA_0006_A23MVY2LT4_1_trimmed_1_fastqc.zip")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d4/b33023d3fce0ceb2d3a4035231bd78/659_eHw-T1-TRNA-1_A23MVY2LT4_1_trimmed_1_fastqc.zip 741/659_eHw-T1-TRNA-1_A23MVY2LT4_1_trimmed_1_fastqc.zip")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/50/0d787b3f04a58a51888f700337cc88/659_bUW-T1-TRNA-1_A23MVY2LT4_1.log 203/659_bUW-T1-TRNA-1_A23MVY2LT4_1.log")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2e/f69e169193a64e2b45f09db3729b59/659_cTi-T1-TRNA-1_A23MVY2LT4_1_combined_fusions_arriba_visualisation.pdf 2347/659_cTi-T1-TRNA-1_A23MVY2LT4_1_combined_fusions_arriba_visualisation.pdf")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5c/9bf3eaa33cd5b38cd734f4429fd9ff/659_buD-T1-TRNA-1_A23MVY2LT4_1_combined_fusions_arriba_visualisation.pdf 2386/659_buD-T1-TRNA-1_A23MVY2LT4_1_combined_fusions_arriba_visualisation.pdf")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d2/fd084b7e6002934611b89b2a817146/PX_FFPE_gb_TRNA_nat_01_A23MVY2LT4_1.log 220/PX_FFPE_gb_TRNA_nat_01_A23MVY2LT4_1.log")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/16/8ad8637bc605cfa8904f9fabc703dc/659_dc8-T1-TRNA-1_A23MVY2LT4_1_trimmed_1_fastqc.zip 653/659_dc8-T1-TRNA-1_A23MVY2LT4_1_trimmed_1_fastqc.zip")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/19/abbe3b2052f6a8a5f1412c91ac9cbf/659_bGW-T1-TRNA-1_A23MVY2LT4_2.attempt1.command.log 2113/659_bGW-T1-TRNA-1_A23MVY2LT4_2.attempt1.command.log")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3a/d30ceeda3c536ed6b6a6f272a022d5/PX_FFPE_gb_TRNA_nat_01_A23MVY2LT4_1.junction_annotation.log 1186/PX_FFPE_gb_TRNA_nat_01_A23MVY2LT4_1.junction_annotation.log")
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    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ca/6bb714e56f0130b809064f7ff3330a/659_bGc-T1-TRNA-1_A23MVY2LT4_1.junctionSaturation_plot.r 1790/659_bGc-T1-TRNA-1_A23MVY2LT4_1.junctionSaturation_plot.r")
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    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3d/f461ca29df2a3dc5c9ff0216e781b7/659_cTi-T1-TRNA-1_A23MVY2LT4_2_rseqc_extra_mqc.tsv 1440/659_cTi-T1-TRNA-1_A23MVY2LT4_2_rseqc_extra_mqc.tsv")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bc/47f12647dad9225b1a877490f22376/659_6i-T1-TRNA-1_A23MVY2LT4_2_seqtool_mqc.tsv 1934/659_6i-T1-TRNA-1_A23MVY2LT4_2_seqtool_mqc.tsv")
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    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/57/96ff34e6e5827a36954f7643c0866f/659_cRB-T1-TRNA-1_A23MVY2LT4_1.bam_stat.txt 1273/659_cRB-T1-TRNA-1_A23MVY2LT4_1.bam_stat.txt")
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    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ea/b5fa3f16b4c11ccfaffd9d82999f2c/659_bhK-T1-TRNA-1_A23MVY2LT4_2_trimmed_1_fastqc.zip 715/659_bhK-T1-TRNA-1_A23MVY2LT4_2_trimmed_1_fastqc.zip")
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    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/df/4ddc0f17cd6cbd5f01525028d6eb3f/659_Mt-T1-TRNA-1_A23MVY2LT4_2.ReadsPerGene.out.tab 888/659_Mt-T1-TRNA-1_A23MVY2LT4_2.ReadsPerGene.out.tab")
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    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2f/d7e18973bcc3713e1e234d65fd217a/PX_FFPE_stm_TRNA_nat_02_A23MVY2LT4_1_2_fastqc.zip 406/PX_FFPE_stm_TRNA_nat_02_A23MVY2LT4_1_2_fastqc.zip")
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    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f9/e49eedf5d7cb4d7b7f2f27a802a803/PX_FFPE_bld_TRNA_nat_02_A23MVY2LT4_1_contamination_mqc.tsv 1630/PX_FFPE_bld_TRNA_nat_02_A23MVY2LT4_1_contamination_mqc.tsv")
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    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ab/e562608c96d2c19ef83e9fafd22461/FFPE_V4_0002_RNA_0006_A23MVY2LT4_1.junction_annotation.log 1228/FFPE_V4_0002_RNA_0006_A23MVY2LT4_1.junction_annotation.log")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c4/06423a1741aba2d9ab2d801e66d276/659_6i-T1-TRNA-1_A23MVY2LT4_1.lc_extrap.txt 2126/659_6i-T1-TRNA-1_A23MVY2LT4_1.lc_extrap.txt")
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    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d6/9a003ccfdf2c36a0209056082e3dc4/659_cWx-T1-TRNA-1_A23MVY2LT4_1_rseqc_extra_mqc.tsv 1392/659_cWx-T1-TRNA-1_A23MVY2LT4_1_rseqc_extra_mqc.tsv")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c2/9011d0ce048e9e408c7ef11e7f5b8d/659_bGc-T1-TRNA-1_A23MVY2LT4_2.attempt1.command.log 2055/659_bGc-T1-TRNA-1_A23MVY2LT4_2.attempt1.command.log")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/44/61587b5576feefd3132c996d48dbb2/659_gK-T1-TRNA-1_A23MVY2LT4_2.fastp.json 136/659_gK-T1-TRNA-1_A23MVY2LT4_2.fastp.json")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ff/ea6054afbb900e5b614746b4da2b12/PX_FFPE_bld_TRNA_nat_03_A23MVY2LT4_1.junctionSaturation_plot.r 1774/PX_FFPE_bld_TRNA_nat_03_A23MVY2LT4_1.junctionSaturation_plot.r")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ef/c70bc99534702976b4a189631aabf3/659_dES-T1-TRNA-1_A23MVY2LT4_2.inner_distance_freq.txt 1144/659_dES-T1-TRNA-1_A23MVY2LT4_2.inner_distance_freq.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b2/35417875f4926fb5c326150bfe1bf2/659_dts-T1-TRNA-1_A23MVY2LT4_1.read_distribution.txt 1476/659_dts-T1-TRNA-1_A23MVY2LT4_1.read_distribution.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6d/6680f25077afa39f94dc481701ff55/659_cfy-T1-TRNA-1_A23MVY2LT4_1_trimmed_2_fastqc.zip 732/659_cfy-T1-TRNA-1_A23MVY2LT4_1_trimmed_2_fastqc.zip")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f1/2898ca8243bf2f2f060b020d6c224f/659_ciJ-T1-TRNA-1_A23MVY2LT4_2_1_fastqc.zip 509/659_ciJ-T1-TRNA-1_A23MVY2LT4_2_1_fastqc.zip")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f8/de25a6596fde525c62b7f78a6b5c00/659_rd-T1-TRNA-1_A23MVY2LT4_1.junctionSaturation_plot.r 1748/659_rd-T1-TRNA-1_A23MVY2LT4_1.junctionSaturation_plot.r")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b7/5928b1f0936118758cb2baad986136/659_djb-T1-TRNA-1_A23MVY2LT4_2.ReadsPerGene.out.tab 913/659_djb-T1-TRNA-1_A23MVY2LT4_2.ReadsPerGene.out.tab")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/26/184fb834bc8193db29cca1fd0a720b/659_bua-T1-TRNA-1_A23MVY2LT4_1.Log.final.out 798/659_bua-T1-TRNA-1_A23MVY2LT4_1.Log.final.out")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f6/e368c70dba7f0d6d9beb7ecffb6b59/659_cfy-T1-TRNA-1_A23MVY2LT4_2.pos.DupRate.xls 1689/659_cfy-T1-TRNA-1_A23MVY2LT4_2.pos.DupRate.xls")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e1/e58548b2b1975e2e001399253cae9a/659_d01-T1-TRNA-1_A23MVY2LT4_1.attempt1.command.log 2054/659_d01-T1-TRNA-1_A23MVY2LT4_1.attempt1.command.log")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3d/a8cc8333b7b5cb769b36e10063b042/659_epP-T1-TRNA-1_A23MVY2LT4_1_seqtool_mqc.tsv 2014/659_epP-T1-TRNA-1_A23MVY2LT4_1_seqtool_mqc.tsv")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/60/bbf0b8ab1b249ce256d782c86cae50/659_ciJ-T1-TRNA-1_A23MVY2LT4_2.md.bam.metrics 1891/659_ciJ-T1-TRNA-1_A23MVY2LT4_2.md.bam.metrics")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2e/a4e4e9be62039326814cb859daad48/659_cAd-T1-TRNA-1_A23MVY2LT4_2.lc_extrap.txt 2144/659_cAd-T1-TRNA-1_A23MVY2LT4_2.lc_extrap.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2f/be7eac851db0d78232c919dba44900/659_bhK-T1-TRNA-1_A23MVY2LT4_1.ReadsPerGene.out.tab 962/659_bhK-T1-TRNA-1_A23MVY2LT4_1.ReadsPerGene.out.tab")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c4/35990896861112b4011050e14181db/PX_FFPE_kid_TRNA_nat_02_A23MVY2LT4_1_contamination_mqc.tsv 1563/PX_FFPE_kid_TRNA_nat_02_A23MVY2LT4_1_contamination_mqc.tsv")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f7/c390ef2186b84f4e151de172be4120/659_d01-T1-TRNA-1_A23MVY2LT4_2.infer_experiment.txt 1007/659_d01-T1-TRNA-1_A23MVY2LT4_2.infer_experiment.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4e/36a5d4ce50a206e9d43125ead65669/659_cIX-T1-TRNA-1_A23MVY2LT4_2.attempt1.command.log 2107/659_cIX-T1-TRNA-1_A23MVY2LT4_2.attempt1.command.log")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/95/5e7079ca75c451a1fb72251ecd8552/659_dES-T1-TRNA-1_A23MVY2LT4_1.lc_extrap.txt 2173/659_dES-T1-TRNA-1_A23MVY2LT4_1.lc_extrap.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4c/6080941d0ab3b634d3bc212d9d1cc2/659_cIX-T1-TRNA-1_A23MVY2LT4_2.md.bam.metrics 1919/659_cIX-T1-TRNA-1_A23MVY2LT4_2.md.bam.metrics")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/45/360d2bbfbb6e9c2deafa908321dcfb/659_djb-T1-TRNA-1_A23MVY2LT4_1.fastp.html 31/659_djb-T1-TRNA-1_A23MVY2LT4_1.fastp.html")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d6/4cd1b7bbf61e74914bfedb8603a481/659_Lx-T1-TRNA-1_A23MVY2LT4_1.log 209/659_Lx-T1-TRNA-1_A23MVY2LT4_1.log")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fe/5b96fadb619dee3110a02b9be043b5/659_bhK-T1-TRNA-1_A23MVY2LT4_1.inner_distance_freq.txt 1154/659_bhK-T1-TRNA-1_A23MVY2LT4_1.inner_distance_freq.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/60/7aeebe2dcb24179632457d619c647e/659_d01-T1-TRNA-1_A23MVY2LT4_1.fastp.json 151/659_d01-T1-TRNA-1_A23MVY2LT4_1.fastp.json")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4f/f38b510deff3383de799ea5d2f2916/FFPE_HD789_01_RNA_13_A23MVY2LT4_1.read_distribution.txt 1472/FFPE_HD789_01_RNA_13_A23MVY2LT4_1.read_distribution.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e0/84637ce59c364e5eee976dbbd23be6/659_ciJ-T1-TRNA-1_A23MVY2LT4_2_trimmed_2_fastqc.zip 718/659_ciJ-T1-TRNA-1_A23MVY2LT4_2_trimmed_2_fastqc.zip")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/70/5e9ab702ff4b0c46c79d137fc95b95/659_dts-T1-TRNA-1_A23MVY2LT4_1.ReadsPerGene.out.tab 887/659_dts-T1-TRNA-1_A23MVY2LT4_1.ReadsPerGene.out.tab")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/78/e7b96ef2028e3464d7ad4b3fcd3ffe/659_6i-T1-TRNA-1_A23MVY2LT4_2.pos.DupRate.xls 1646/659_6i-T1-TRNA-1_A23MVY2LT4_2.pos.DupRate.xls")
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    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b2/6c85727636c2c1f7635068d2405e6f/PX_FFPE_pan_TRNA_nat_01_A23MVY2LT4_1.pos.DupRate.xls 1658/PX_FFPE_pan_TRNA_nat_01_A23MVY2LT4_1.pos.DupRate.xls")
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    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/23/5dbeee91ec3edac087c96ec81159af/PX_FFPE_stm_TRNA_nat_01_A23MVY2LT4_1_1_fastqc.zip 503/PX_FFPE_stm_TRNA_nat_01_A23MVY2LT4_1_1_fastqc.zip")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/70/a751824a60baeb4edfc98c6027ec69/659_djb-T1-TRNA-1_A23MVY2LT4_2_trimmed_1_fastqc.zip 753/659_djb-T1-TRNA-1_A23MVY2LT4_2_trimmed_1_fastqc.zip")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1c/643c81bc90e46b4cb4763d06278b68/PX_FFPE_bld_TRNA_nat_01_A23MVY2LT4_1.ReadsPerGene.out.tab 950/PX_FFPE_bld_TRNA_nat_01_A23MVY2LT4_1.ReadsPerGene.out.tab")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b7/5928b1f0936118758cb2baad986136/659_djb-T1-TRNA-1_A23MVY2LT4_2.Log.final.out 817/659_djb-T1-TRNA-1_A23MVY2LT4_2.Log.final.out")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e2/eb464a939a0a549484dd43cf1030bd/659_d01-T1-TRNA-1_A23MVY2LT4_2_trimmed_1_fastqc.zip 613/659_d01-T1-TRNA-1_A23MVY2LT4_2_trimmed_1_fastqc.zip")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a4/53b2cf934ef3f17a0e4d0b7ec0dcbc/PX_FFPE_bld_TRNA_nat_01_A23MVY2LT4_1.inner_distance_freq.txt 1139/PX_FFPE_bld_TRNA_nat_01_A23MVY2LT4_1.inner_distance_freq.txt")
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    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d1/d7de0106fbd7293e5b546c734a7cde/659_d01-T1-TRNA-1_A23MVY2LT4_1_trimmed_1_fastqc.zip 711/659_d01-T1-TRNA-1_A23MVY2LT4_1_trimmed_1_fastqc.zip")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1b/0fed5d1f6b8129ef63695404f9ec0f/659_Dl-T1-TRNA-1_A23MVY2LT4_2_1_fastqc.zip 409/659_Dl-T1-TRNA-1_A23MVY2LT4_2_1_fastqc.zip")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/35/48f5cfbe7f285a3f8e3aa1eb7a7082/659_cRa-T1-TRNA-1_A23MVY2LT4_2.junctionSaturation_plot.r 1814/659_cRa-T1-TRNA-1_A23MVY2LT4_2.junctionSaturation_plot.r")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/52/33a56d29b4780ca17eeb0cbe6e04fd/FFPE_HD789_01_RNA_13_A23MVY2LT4_1.md.bam.metrics 1866/FFPE_HD789_01_RNA_13_A23MVY2LT4_1.md.bam.metrics")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/67/fe928e6d14d229a62b9f0d44613c91/659_ciJ-T1-TRNA-1_A23MVY2LT4_2.Log.final.out 840/659_ciJ-T1-TRNA-1_A23MVY2LT4_2.Log.final.out")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e3/e315fe76e73e47b48ea99849c3ded3/659_epP-T1-TRNA-1_A23MVY2LT4_1.pos.DupRate.xls 1714/659_epP-T1-TRNA-1_A23MVY2LT4_1.pos.DupRate.xls")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/16/97de73f248bff2b208d9b79de26d4c/659_cIX-T1-TRNA-1_A23MVY2LT4_2.inner_distance_freq.txt 1111/659_cIX-T1-TRNA-1_A23MVY2LT4_2.inner_distance_freq.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/da/5a95fdb0352c0255e112c813dabb53/659_Mt-T1-TRNA-1_A23MVY2LT4_2.attempt1.command.log 2039/659_Mt-T1-TRNA-1_A23MVY2LT4_2.attempt1.command.log")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a2/6f53d7698ba28c5c6cad2d65ff6e8f/659_bTo-T1-TRNA-1_A23MVY2LT4_2.junction_annotation.log 1234/659_bTo-T1-TRNA-1_A23MVY2LT4_2.junction_annotation.log")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4f/ee84a6fd07c7c83d8f65ef0a589db4/659_cRa-T1-TRNA-1_A23MVY2LT4_2_preseq_mqc.tsv 2303/659_cRa-T1-TRNA-1_A23MVY2LT4_2_preseq_mqc.tsv")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ab/394c91c4e6cccdf8531dff6bb3df10/659_Mt-T1-TRNA-1_A23MVY2LT4_2_1_fastqc.zip 421/659_Mt-T1-TRNA-1_A23MVY2LT4_2_1_fastqc.zip")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c3/671c5505d298fef2e6e57c79d16b18/PX_FFPE_bld_TRNA_nat_03_A23MVY2LT4_1.read_distribution.txt 1487/PX_FFPE_bld_TRNA_nat_03_A23MVY2LT4_1.read_distribution.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/51/8729727fbe639a19b94d07fa87f574/659_bGc-T1-TRNA-1_A23MVY2LT4_2.pos.DupRate.xls 1666/659_bGc-T1-TRNA-1_A23MVY2LT4_2.pos.DupRate.xls")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/26/c15be5405c7ff74b7b973d6c3ee4dc/PX_FFPE_pan_TRNA_nat_01_A23MVY2LT4_1.ReadsPerGene.out.tab 898/PX_FFPE_pan_TRNA_nat_01_A23MVY2LT4_1.ReadsPerGene.out.tab")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9a/0e3cc0b00ed86a6fa9ffdfb072fabb/659_ezg-T1-TRNA-1_A23MVY2LT4_2_contamination_mqc.tsv 1595/659_ezg-T1-TRNA-1_A23MVY2LT4_2_contamination_mqc.tsv")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f6/bd8c83ad15b96854ffde32e3ff43d9/659_bua-T1-TRNA-1_A23MVY2LT4_1.log 240/659_bua-T1-TRNA-1_A23MVY2LT4_1.log")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/84/92e1da56c90ed3bc49e7f66e98a811/PX_FFPE_bld_TRNA_nat_02_A23MVY2LT4_1.inner_distance_freq.txt 1141/PX_FFPE_bld_TRNA_nat_02_A23MVY2LT4_1.inner_distance_freq.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/tmp/1b/7ca46848d4d9f4054b74f689ff5d2a/workflow_summary_mqc.yaml 2/workflow_summary_mqc.yaml")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8d/9deb8d01dc0ffcd4c16df6fb9f78c8/659_buD-T1-TRNA-1_A23MVY2LT4_1_trimmed_1_fastqc.zip 671/659_buD-T1-TRNA-1_A23MVY2LT4_1_trimmed_1_fastqc.zip")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/44/bf862bd9ce09703616a3e110f9ad8b/PX_FFPE_pan_TRNA_nat_03_A23MVY2LT4_1_rseqc_extra_mqc.tsv 1368/PX_FFPE_pan_TRNA_nat_03_A23MVY2LT4_1_rseqc_extra_mqc.tsv")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e0/8b8e8670db61812a3aba56d253b2ac/659_cTi-T1-TRNA-1_A23MVY2LT4_2.fastp.html 69/659_cTi-T1-TRNA-1_A23MVY2LT4_2.fastp.html")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/96/7a8df25f1c31d744fface1bdd5be7c/659_cRa-T1-TRNA-1_A23MVY2LT4_2.fastp.html 84/659_cRa-T1-TRNA-1_A23MVY2LT4_2.fastp.html")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6a/2f2e4cbc36473efa9d5e03939ca5bf/659_d01-T1-TRNA-1_A23MVY2LT4_1.md.bam.metrics 1867/659_d01-T1-TRNA-1_A23MVY2LT4_1.md.bam.metrics")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/40/4a1d5aaa03950d34a8d541e4395bc8/659_c95-T1-TRNA-1_A23MVY2LT4_2_kallisto_mqc.tsv 358/659_c95-T1-TRNA-1_A23MVY2LT4_2_kallisto_mqc.tsv")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/85/bc9eb1528e98ea5a459a0aee1c4f46/PX_FFPE_pan_TRNA_nat_02_A23MVY2LT4_1.lc_extrap.txt 2148/PX_FFPE_pan_TRNA_nat_02_A23MVY2LT4_1.lc_extrap.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a8/406c1b4450936640612149f71548cb/659_bUW-T1-TRNA-1_A23MVY2LT4_1_rseqc_extra_mqc.tsv 1354/659_bUW-T1-TRNA-1_A23MVY2LT4_1_rseqc_extra_mqc.tsv")
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    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/59/16b4ef0df4a6190615c7b0366f5db8/659_dm4-T1-TRNA-1_A23MVY2LT4_2_kallisto_mqc.tsv 297/659_dm4-T1-TRNA-1_A23MVY2LT4_2_kallisto_mqc.tsv")
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    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5c/1a4efe81697cbd06d3829a1c76a732/659_dm4-T1-TRNA-1_A23MVY2LT4_1.read_distribution.txt 1453/659_dm4-T1-TRNA-1_A23MVY2LT4_1.read_distribution.txt")
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    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/db/255c738e002eceaabc0db21654ab15/659_bUW-T1-TRNA-1_A23MVY2LT4_2.attempt1.command.log 2096/659_bUW-T1-TRNA-1_A23MVY2LT4_2.attempt1.command.log")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ea/cfc3e9ef4add2c4463fa146fda6eaf/659_dm4-T1-TRNA-1_A23MVY2LT4_2_contamination_mqc.tsv 1545/659_dm4-T1-TRNA-1_A23MVY2LT4_2_contamination_mqc.tsv")
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    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a2/8066eb34227494ca569f6591a29007/659_gK-T1-TRNA-1_A23MVY2LT4_1.fastp.json 186/659_gK-T1-TRNA-1_A23MVY2LT4_1.fastp.json")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4b/68dfaf8cd1dfaa84bab5aa1a7f4408/659_bUW-T1-TRNA-1_A23MVY2LT4_2.Log.final.out 849/659_bUW-T1-TRNA-1_A23MVY2LT4_2.Log.final.out")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/26/09a9a76641793a3aeee794a5fe2523/659_bGc-T1-TRNA-1_A23MVY2LT4_1.lc_extrap.txt 2168/659_bGc-T1-TRNA-1_A23MVY2LT4_1.lc_extrap.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/33/7d1f808b77f3b949f000db7bc8ea79/659_epP-T1-TRNA-1_A23MVY2LT4_2.inner_distance_freq.txt 1153/659_epP-T1-TRNA-1_A23MVY2LT4_2.inner_distance_freq.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ba/b900d9d07cfffc7eedf4ea51d79161/659_bQZ-T1-TRNA-1_A23MVY2LT4_2.bam_stat.txt 1338/659_bQZ-T1-TRNA-1_A23MVY2LT4_2.bam_stat.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1d/eb71a597c3194a74b94d27e82b8574/NTC_0001_0001_A23MVY2LT4_1_seqtool_mqc.tsv 1923/NTC_0001_0001_A23MVY2LT4_1_seqtool_mqc.tsv")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b2/4da6cf19672de5073f84b52842f3be/659_cWx-T1-TRNA-1_A23MVY2LT4_1.junction_annotation.log 1215/659_cWx-T1-TRNA-1_A23MVY2LT4_1.junction_annotation.log")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a0/a922198b16c39e27d87a0cd555fd0a/659_bhK-T1-TRNA-1_A23MVY2LT4_2.log 246/659_bhK-T1-TRNA-1_A23MVY2LT4_2.log")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e3/b2eaa00c6ff641cc56f8e49ca117a9/NTC_0001_0001_A23MVY2LT4_1.fastp.json 99/NTC_0001_0001_A23MVY2LT4_1.fastp.json")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/02/36cb626ff41c8cc1aafa89e86bb878/659_bQZ-T1-TRNA-1_A23MVY2LT4_1.inner_distance_freq.txt 1109/659_bQZ-T1-TRNA-1_A23MVY2LT4_1.inner_distance_freq.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1e/6d00a41a774bc6e87f9f62cd3b6713/PX_FFPE_pst_TRNA_nat_02_A23MVY2LT4_1.attempt1.command.log 2049/PX_FFPE_pst_TRNA_nat_02_A23MVY2LT4_1.attempt1.command.log")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2e/a18734d6aa9f35541070cd49c8c624/659_buD-T1-TRNA-1_A23MVY2LT4_2_rseqc_extra_mqc.tsv 1381/659_buD-T1-TRNA-1_A23MVY2LT4_2_rseqc_extra_mqc.tsv")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7a/954a3b4de3bfbfc4e83c29dd233650/659_bQZ-T1-TRNA-1_A23MVY2LT4_1.read_distribution.txt 1522/659_bQZ-T1-TRNA-1_A23MVY2LT4_1.read_distribution.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/67/341f139e02082a0ee2ff4e783383f3/659_gK-T1-TRNA-1_A23MVY2LT4_1.lc_extrap.txt 2200/659_gK-T1-TRNA-1_A23MVY2LT4_1.lc_extrap.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fb/17ea15c63f19ca18773799417b7bd4/PX_FFPE_pan_TRNA_nat_03_A23MVY2LT4_1.lc_extrap.txt 2146/PX_FFPE_pan_TRNA_nat_03_A23MVY2LT4_1.lc_extrap.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ba/b2b4f3abc72094e0f2b5324f376aab/659_eHw-T1-TRNA-1_A23MVY2LT4_2_seqtool_mqc.tsv 2004/659_eHw-T1-TRNA-1_A23MVY2LT4_2_seqtool_mqc.tsv")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0c/333828c7fcf3ecc72fb0bfbc255283/659_dts-T1-TRNA-1_A23MVY2LT4_2.junctionSaturation_plot.r 1792/659_dts-T1-TRNA-1_A23MVY2LT4_2.junctionSaturation_plot.r")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5a/0680a34ac61fe3163dcd69793f4956/659_cIX-T1-TRNA-1_A23MVY2LT4_2.ReadsPerGene.out.tab 919/659_cIX-T1-TRNA-1_A23MVY2LT4_2.ReadsPerGene.out.tab")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/da/5a95fdb0352c0255e112c813dabb53/659_Mt-T1-TRNA-1_A23MVY2LT4_2.lc_extrap.txt 2135/659_Mt-T1-TRNA-1_A23MVY2LT4_2.lc_extrap.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c4/4284f652edaed1d621c3c35fd8f211/PX_FFPE_stm_TRNA_nat_02_A23MVY2LT4_1.pos.DupRate.xls 1649/PX_FFPE_stm_TRNA_nat_02_A23MVY2LT4_1.pos.DupRate.xls")
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    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1e/30115c26e9e4c1a04a93d3a193c3ff/659_dES-T1-TRNA-1_A23MVY2LT4_1_trimmed_2_fastqc.zip 706/659_dES-T1-TRNA-1_A23MVY2LT4_1_trimmed_2_fastqc.zip")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ab/a74a228c55c50b5adfd4bb41d5bba9/659_Dl-T1-TRNA-1_A23MVY2LT4_2.ReadsPerGene.out.tab 876/659_Dl-T1-TRNA-1_A23MVY2LT4_2.ReadsPerGene.out.tab")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/aa/ee3c360683d160a044cc37cdf5dcca/659_c95-T1-TRNA-1_A23MVY2LT4_1.fastp.json 144/659_c95-T1-TRNA-1_A23MVY2LT4_1.fastp.json")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/16/facfea7bb1cf49ded6d145bb621184/PX_FFPE_bld_TRNA_nat_04_A23MVY2LT4_1_1_fastqc.zip 525/PX_FFPE_bld_TRNA_nat_04_A23MVY2LT4_1_1_fastqc.zip")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e8/b8f3ff8d83ffaa1ab79c965061f82b/659_d01-T1-TRNA-1_A23MVY2LT4_1.read_distribution.txt 1474/659_d01-T1-TRNA-1_A23MVY2LT4_1.read_distribution.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b0/f66b5bce143b14196e0bbfa75c844e/659_bQZ-T1-TRNA-1_A23MVY2LT4_1_trimmed_1_fastqc.zip 689/659_bQZ-T1-TRNA-1_A23MVY2LT4_1_trimmed_1_fastqc.zip")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/72/08e79a31961c6496a3da353d388b5c/659_cVw-T1-TRNA-1_A23MVY2LT4_2.ReadsPerGene.out.tab 930/659_cVw-T1-TRNA-1_A23MVY2LT4_2.ReadsPerGene.out.tab")
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    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b9/68451d52c03084aec086fcbea35fdc/PX_FFPE_gb_TRNA_nat_02_A23MVY2LT4_1_1_fastqc.zip 501/PX_FFPE_gb_TRNA_nat_02_A23MVY2LT4_1_1_fastqc.zip")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d5/fe339adae98860911b61111a103f0f/659_bGc-T1-TRNA-1_A23MVY2LT4_2.read_distribution.txt 1467/659_bGc-T1-TRNA-1_A23MVY2LT4_2.read_distribution.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b2/c6a80302f1340482c1770c3b9b9f2b/659_ciZ-T1-TRNA-1_A23MVY2LT4_2.read_distribution.txt 1475/659_ciZ-T1-TRNA-1_A23MVY2LT4_2.read_distribution.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2d/4134efd8ae323f04939fde779f2e32/659_Dl-T1-TRNA-1_A23MVY2LT4_1_2_fastqc.zip 432/659_Dl-T1-TRNA-1_A23MVY2LT4_1_2_fastqc.zip")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9e/f1444cb7a57bdab68bb52b38305aee/659_dc8-T1-TRNA-1_A23MVY2LT4_2.pos.DupRate.xls 1682/659_dc8-T1-TRNA-1_A23MVY2LT4_2.pos.DupRate.xls")
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    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/21/ca6cb34c33b37c7969547b2a6942fa/PX_FFPE_stm_TRNA_nat_01_A23MVY2LT4_1_contamination_mqc.tsv 1620/PX_FFPE_stm_TRNA_nat_01_A23MVY2LT4_1_contamination_mqc.tsv")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9e/f2157c83b6a7d06e399e988730f6e0/659_dm4-T1-TRNA-1_A23MVY2LT4_1.attempt1.command.log 2026/659_dm4-T1-TRNA-1_A23MVY2LT4_1.attempt1.command.log")
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    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ff/b05318c9339b5a0a7f5a0aae04c0e9/659_cAd-T1-TRNA-1_A23MVY2LT4_1.bam_stat.txt 1276/659_cAd-T1-TRNA-1_A23MVY2LT4_1.bam_stat.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/03/52f55e042bc2bc7ea3520278eafe61/659_6i-T1-TRNA-1_A23MVY2LT4_2_contamination_mqc.tsv 1551/659_6i-T1-TRNA-1_A23MVY2LT4_2_contamination_mqc.tsv")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4d/02e617bb9744055d63aebdbb409139/659_bGc-T1-TRNA-1_A23MVY2LT4_1.inner_distance_freq.txt 1118/659_bGc-T1-TRNA-1_A23MVY2LT4_1.inner_distance_freq.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/75/bace463d17384e6dc8650ad63a5b62/659_cAd-T1-TRNA-1_A23MVY2LT4_1_contamination_mqc.tsv 1567/659_cAd-T1-TRNA-1_A23MVY2LT4_1_contamination_mqc.tsv")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f3/fdb2845cd51b0725d75ef91ed89372/659_cWx-T1-TRNA-1_A23MVY2LT4_1_trimmed_2_fastqc.zip 768/659_cWx-T1-TRNA-1_A23MVY2LT4_1_trimmed_2_fastqc.zip")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/82/0dd679802df6411b11891d91fefb6b/FFPE_HD789_01_RNA_13_A23MVY2LT4_1.inner_distance_freq.txt 1097/FFPE_HD789_01_RNA_13_A23MVY2LT4_1.inner_distance_freq.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9d/ed550fbdbf9b876cc20d7035b7649b/PX_FFPE_pan_TRNA_nat_02_A23MVY2LT4_1_preseq_mqc.tsv 2244/PX_FFPE_pan_TRNA_nat_02_A23MVY2LT4_1_preseq_mqc.tsv")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1a/6c33862feb295d3a9424211c28f397/PX_FFPE_bld_TRNA_nat_01_A23MVY2LT4_1_contamination_mqc.tsv 1619/PX_FFPE_bld_TRNA_nat_01_A23MVY2LT4_1_contamination_mqc.tsv")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4b/8881f843f32d192b88e272eaa2b6eb/659_d01-T1-TRNA-1_A23MVY2LT4_1.infer_experiment.txt 1004/659_d01-T1-TRNA-1_A23MVY2LT4_1.infer_experiment.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6a/35c512de68ed833fd4d9efbcc53d52/659_c95-T1-TRNA-1_A23MVY2LT4_1_contamination_mqc.tsv 1611/659_c95-T1-TRNA-1_A23MVY2LT4_1_contamination_mqc.tsv")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/93/4d0bacf0d6d3ea6e586ba7ce68f5df/659_djb-T1-TRNA-1_A23MVY2LT4_1.log 267/659_djb-T1-TRNA-1_A23MVY2LT4_1.log")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fc/2cc9b812ed1cfbcea0eae5e25ef30b/659_cRa-T1-TRNA-1_A23MVY2LT4_1.junction_annotation.log 1248/659_cRa-T1-TRNA-1_A23MVY2LT4_1.junction_annotation.log")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/16/f8e69f1033d08e994f45cc67a57d6c/659_dc8-T1-TRNA-1_A23MVY2LT4_1.ReadsPerGene.out.tab 951/659_dc8-T1-TRNA-1_A23MVY2LT4_1.ReadsPerGene.out.tab")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9b/06e659f5aa7fa8bf7e8b18e0a8bb5a/659_ciZ-T1-TRNA-1_A23MVY2LT4_1.Log.final.out 814/659_ciZ-T1-TRNA-1_A23MVY2LT4_1.Log.final.out")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2d/034d71176a6c73152c94ef31570695/659_eHw-T1-TRNA-1_A23MVY2LT4_2.inner_distance_freq.txt 1131/659_eHw-T1-TRNA-1_A23MVY2LT4_2.inner_distance_freq.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/76/0a12d501347c4db884005b88e13fb2/PX_FFPE_bld_TRNA_nat_02_A23MVY2LT4_1.lc_extrap.txt 2159/PX_FFPE_bld_TRNA_nat_02_A23MVY2LT4_1.lc_extrap.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bd/98a31bcfdbf424a468888284bf7e5f/659_epP-T1-TRNA-1_A23MVY2LT4_2.Log.final.out 865/659_epP-T1-TRNA-1_A23MVY2LT4_2.Log.final.out")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e1/4120e72068940f075636515c5c0735/659_ciJ-T1-TRNA-1_A23MVY2LT4_1.junction_annotation.log 1199/659_ciJ-T1-TRNA-1_A23MVY2LT4_1.junction_annotation.log")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6b/f75473488aab432fa26fe4dd79ccfc/659_cWx-T1-TRNA-1_A23MVY2LT4_1.bam_stat.txt 1296/659_cWx-T1-TRNA-1_A23MVY2LT4_1.bam_stat.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/df/332b26bb2a7e87c3e0b8fee9a0eb3f/659_cRa-T1-TRNA-1_A23MVY2LT4_2.md.bam.metrics 1907/659_cRa-T1-TRNA-1_A23MVY2LT4_2.md.bam.metrics")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/95/21b094e195346139dc95eba0b956e5/659_6i-T1-TRNA-1_A23MVY2LT4_2_combined_fusions_arriba_visualisation.pdf 2313/659_6i-T1-TRNA-1_A23MVY2LT4_2_combined_fusions_arriba_visualisation.pdf")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/36/cff487931e351c659eb4116d4d3050/PX_FFPE_gb_TRNA_nat_01_A23MVY2LT4_1_combined_fusions_arriba_visualisation.pdf 2327/PX_FFPE_gb_TRNA_nat_01_A23MVY2LT4_1_combined_fusions_arriba_visualisation.pdf")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f0/8b11a3ad0cb022f9be1a7e6fb88ae2/659_bTo-T1-TRNA-1_A23MVY2LT4_1_preseq_mqc.tsv 2272/659_bTo-T1-TRNA-1_A23MVY2LT4_1_preseq_mqc.tsv")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7b/ee2f093820e52bbba43d78ae9daed2/659_bQZ-T1-TRNA-1_A23MVY2LT4_2.attempt1.command.log 2085/659_bQZ-T1-TRNA-1_A23MVY2LT4_2.attempt1.command.log")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2f/3aa967d44bee60ecdd4b0958bdc11d/659_epP-T1-TRNA-1_A23MVY2LT4_2_preseq_mqc.tsv 2297/659_epP-T1-TRNA-1_A23MVY2LT4_2_preseq_mqc.tsv")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0a/83d9706d7e586cdd22aa895a865d0c/659_bCu-T1-TRNA-1_A23MVY2LT4_1_trimmed_2_fastqc.zip 626/659_bCu-T1-TRNA-1_A23MVY2LT4_1_trimmed_2_fastqc.zip")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/93/d8313c2eda5bc78b37ae03af15dcdb/PX_FFPE_esp_TRNA_nat_02_A23MVY2LT4_1.lc_extrap.txt 2177/PX_FFPE_esp_TRNA_nat_02_A23MVY2LT4_1.lc_extrap.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6a/29ca1a8bc1411c12ad998109804454/PX_FFPE_pst_TRNA_nat_02_A23MVY2LT4_1.log 278/PX_FFPE_pst_TRNA_nat_02_A23MVY2LT4_1.log")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f0/b8206cc800a25d02ba97d289a5554d/659_bhK-T1-TRNA-1_A23MVY2LT4_1_1_fastqc.zip 507/659_bhK-T1-TRNA-1_A23MVY2LT4_1_1_fastqc.zip")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/72/f739bfa460b8f0b4e28c8768b83f51/PX_FFPE_esp_TRNA_nat_02_A23MVY2LT4_1.junction_annotation.log 1230/PX_FFPE_esp_TRNA_nat_02_A23MVY2LT4_1.junction_annotation.log")
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    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/aa/18fe20dd395ab631b4f57a91fcdb12/659_buD-T1-TRNA-1_A23MVY2LT4_2.ReadsPerGene.out.tab 886/659_buD-T1-TRNA-1_A23MVY2LT4_2.ReadsPerGene.out.tab")
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    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/35/2453de2eaf40686e54724ff86b1e4a/659_bGc-T1-TRNA-1_A23MVY2LT4_2.fastp.json 131/659_bGc-T1-TRNA-1_A23MVY2LT4_2.fastp.json")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/56/39e061dab1c9b0387e28dff0156b18/659_bNS-T1-TRNA-1_A23MVY2LT4_1_kallisto_mqc.tsv 364/659_bNS-T1-TRNA-1_A23MVY2LT4_1_kallisto_mqc.tsv")
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    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d8/ab20447a972c4e6857baa35c1f6a34/PX_FFPE_pst_TRNA_nat_02_A23MVY2LT4_1.pos.DupRate.xls 1652/PX_FFPE_pst_TRNA_nat_02_A23MVY2LT4_1.pos.DupRate.xls")
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    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e4/01f43c2685ffd552db6f1103edf4ca/PX_FFPE_kid_TRNA_nat_01_A23MVY2LT4_1_kallisto_mqc.tsv 296/PX_FFPE_kid_TRNA_nat_01_A23MVY2LT4_1_kallisto_mqc.tsv")
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    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d7/a215a52654cec40c0e000d61ad2c83/659_bQZ-T1-TRNA-1_A23MVY2LT4_1.Log.final.out 820/659_bQZ-T1-TRNA-1_A23MVY2LT4_1.Log.final.out")
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    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/09/7e57c12f40721ea7f2b771c2fe0e8e/659_c95-T1-TRNA-1_A23MVY2LT4_1.Log.final.out 843/659_c95-T1-TRNA-1_A23MVY2LT4_1.Log.final.out")
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    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/62/ea49e47ab25f2f335008133245839d/659_cVw-T1-TRNA-1_A23MVY2LT4_2.attempt1.command.log 2108/659_cVw-T1-TRNA-1_A23MVY2LT4_2.attempt1.command.log")
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    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7a/543a0e00383d6499b9b8d6c36c8ea2/659_cAd-T1-TRNA-1_A23MVY2LT4_1.fastp.html 29/659_cAd-T1-TRNA-1_A23MVY2LT4_1.fastp.html")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/26/124b057666592e212584270d07548b/659_d01-T1-TRNA-1_A23MVY2LT4_1.junction_annotation.log 1187/659_d01-T1-TRNA-1_A23MVY2LT4_1.junction_annotation.log")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a4/4f19d765f7b514cc765241bb3e6568/659_dcz-T1-TRNA-1_A23MVY2LT4_1.pos.DupRate.xls 1638/659_dcz-T1-TRNA-1_A23MVY2LT4_1.pos.DupRate.xls")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/63/d4af38b08111c8b65f35965ff1d2a7/659_bQZ-T1-TRNA-1_A23MVY2LT4_2_2_fastqc.zip 538/659_bQZ-T1-TRNA-1_A23MVY2LT4_2_2_fastqc.zip")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5c/a2f2741722d9bbdf9ff052463fa495/659_bGc-T1-TRNA-1_A23MVY2LT4_1.junction_annotation.log 1217/659_bGc-T1-TRNA-1_A23MVY2LT4_1.junction_annotation.log")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d0/5a0b48ec168421e1e88e6b92be12fe/659_Dl-T1-TRNA-1_A23MVY2LT4_1_combined_fusions_arriba_visualisation.pdf 2320/659_Dl-T1-TRNA-1_A23MVY2LT4_1_combined_fusions_arriba_visualisation.pdf")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/99/8d824bfa84e5e76e6677e26d10f977/PX_FFPE_kid_TRNA_nat_03_A23MVY2LT4_1.inner_distance_freq.txt 1060/PX_FFPE_kid_TRNA_nat_03_A23MVY2LT4_1.inner_distance_freq.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8c/82dd938fe98cc02024896b9979d689/659_bUW-T1-TRNA-1_A23MVY2LT4_2_rseqc_extra_mqc.tsv 1420/659_bUW-T1-TRNA-1_A23MVY2LT4_2_rseqc_extra_mqc.tsv")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/db/02d9cba022566d9cda22489eee2019/659_cRB-T1-TRNA-1_A23MVY2LT4_2_trimmed_2_fastqc.zip 680/659_cRB-T1-TRNA-1_A23MVY2LT4_2_trimmed_2_fastqc.zip")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6b/584a35093307a8e72aba342d3f45ee/659_bQZ-T1-TRNA-1_A23MVY2LT4_2_kallisto_mqc.tsv 382/659_bQZ-T1-TRNA-1_A23MVY2LT4_2_kallisto_mqc.tsv")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1b/1150b6ac1d373bf776454f8acd4c44/659_ecd-T1-TRNA-1_A23MVY2LT4_1.inner_distance_freq.txt 1091/659_ecd-T1-TRNA-1_A23MVY2LT4_1.inner_distance_freq.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/30/55d6fa79e3855d61cb36a12e00471a/PX_FFPE_gb_TRNA_nat_01_A23MVY2LT4_1.bam_stat.txt 1305/PX_FFPE_gb_TRNA_nat_01_A23MVY2LT4_1.bam_stat.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f4/9c7ac662b1574c20d06eaaa0b5029b/659_bUW-T1-TRNA-1_A23MVY2LT4_1.bam_stat.txt 1258/659_bUW-T1-TRNA-1_A23MVY2LT4_1.bam_stat.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/db/c86fc9aa3053f57109dd6c2e7c9b3f/659_bQZ-T1-TRNA-1_A23MVY2LT4_2.fastp.html 94/659_bQZ-T1-TRNA-1_A23MVY2LT4_2.fastp.html")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c6/9fb1b37669a788222f19337742f274/PX_FFPE_stm_TRNA_nat_01_A23MVY2LT4_1_rseqc_extra_mqc.tsv 1406/PX_FFPE_stm_TRNA_nat_01_A23MVY2LT4_1_rseqc_extra_mqc.tsv")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a9/ba196e97a4b81643f82e5aa87c6d6b/659_cfy-T1-TRNA-1_A23MVY2LT4_1_1_fastqc.zip 533/659_cfy-T1-TRNA-1_A23MVY2LT4_1_1_fastqc.zip")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/75/0ad82f378edf4fb579f98a5d60cd61/PX_FFPE_kid_TRNA_nat_02_A23MVY2LT4_1.read_distribution.txt 1492/PX_FFPE_kid_TRNA_nat_02_A23MVY2LT4_1.read_distribution.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/37/48a7ad7160f828bfbf6278063ba19a/659_cVw-T1-TRNA-1_A23MVY2LT4_2_trimmed_2_fastqc.zip 740/659_cVw-T1-TRNA-1_A23MVY2LT4_2_trimmed_2_fastqc.zip")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ed/34b6ed483afd59b3de553122e286b5/659_dts-T1-TRNA-1_A23MVY2LT4_2.fastp.json 173/659_dts-T1-TRNA-1_A23MVY2LT4_2.fastp.json")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c9/aae04f5bf756cf8f66a739d166836d/659_cVw-T1-TRNA-1_A23MVY2LT4_2_preseq_mqc.tsv 2300/659_cVw-T1-TRNA-1_A23MVY2LT4_2_preseq_mqc.tsv")
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    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/19/cda4df935f0982ceff90a973cc9044/659_bTo-T1-TRNA-1_A23MVY2LT4_2.read_distribution.txt 1531/659_bTo-T1-TRNA-1_A23MVY2LT4_2.read_distribution.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/32/495714c23ce312d469bdaffa096024/659_djb-T1-TRNA-1_A23MVY2LT4_2_contamination_mqc.tsv 1606/659_djb-T1-TRNA-1_A23MVY2LT4_2_contamination_mqc.tsv")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/76/3d2775d06d85168972b4cf62b6c21b/659_cfy-T1-TRNA-1_A23MVY2LT4_2_preseq_mqc.tsv 2261/659_cfy-T1-TRNA-1_A23MVY2LT4_2_preseq_mqc.tsv")
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    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/11/d1ca938e36a79d229e6f82c6ab330a/659_ezg-T1-TRNA-1_A23MVY2LT4_2_rseqc_extra_mqc.tsv 1399/659_ezg-T1-TRNA-1_A23MVY2LT4_2_rseqc_extra_mqc.tsv")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/24/b6b342d5f60e1f0f80762c0dff75f7/PX_FFPE_stm_TRNA_nat_03_A23MVY2LT4_1.read_distribution.txt 1525/PX_FFPE_stm_TRNA_nat_03_A23MVY2LT4_1.read_distribution.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ad/b69876bed0d313e25fbf9ce6464577/659_dc8-T1-TRNA-1_A23MVY2LT4_1_combined_fusions_arriba_visualisation.pdf 2383/659_dc8-T1-TRNA-1_A23MVY2LT4_1_combined_fusions_arriba_visualisation.pdf")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9e/cdb2125f452168be7b45fa6bf8a2ff/659_bua-T1-TRNA-1_A23MVY2LT4_2.junctionSaturation_plot.r 1818/659_bua-T1-TRNA-1_A23MVY2LT4_2.junctionSaturation_plot.r")
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    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f8/dea691ae2c44db8af9bc4e1cb00db5/659_bGW-T1-TRNA-1_A23MVY2LT4_2_combined_fusions_arriba_visualisation.pdf 2375/659_bGW-T1-TRNA-1_A23MVY2LT4_2_combined_fusions_arriba_visualisation.pdf")
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    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/19/662a3be740c65f4e190090c6c4ce36/659_dcz-T1-TRNA-1_A23MVY2LT4_1_contamination_mqc.tsv 1542/659_dcz-T1-TRNA-1_A23MVY2LT4_1_contamination_mqc.tsv")
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    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/76/bd28a38fbe613e5b661556ada02aa9/659_6i-T1-TRNA-1_A23MVY2LT4_1.bam_stat.txt 1262/659_6i-T1-TRNA-1_A23MVY2LT4_1.bam_stat.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7e/62355e833651a1cc3316fdfd0f821e/PX_FFPE_gb_TRNA_nat_02_A23MVY2LT4_1_trimmed_2_fastqc.zip 724/PX_FFPE_gb_TRNA_nat_02_A23MVY2LT4_1_trimmed_2_fastqc.zip")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/54/6a387fb05a895953a707b0a904326d/659_cVw-T1-TRNA-1_A23MVY2LT4_1.log 270/659_cVw-T1-TRNA-1_A23MVY2LT4_1.log")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f1/622b36144fe2488defaec72dea0af5/PX_FFPE_stm_TRNA_nat_01_A23MVY2LT4_1_seqtool_mqc.tsv 1994/PX_FFPE_stm_TRNA_nat_01_A23MVY2LT4_1_seqtool_mqc.tsv")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8b/5498c6a680af105a40c6a0b84d5eb5/659_dES-T1-TRNA-1_A23MVY2LT4_2_2_fastqc.zip 446/659_dES-T1-TRNA-1_A23MVY2LT4_2_2_fastqc.zip")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f7/a279cbda1cd00c01e572aac9f6c237/659_bua-T1-TRNA-1_A23MVY2LT4_1.read_distribution.txt 1524/659_bua-T1-TRNA-1_A23MVY2LT4_1.read_distribution.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4d/e97ef8a1a161e043c3026faba84d48/659_ecd-T1-TRNA-1_A23MVY2LT4_2.fastp.html 32/659_ecd-T1-TRNA-1_A23MVY2LT4_2.fastp.html")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/26/373f82eb6f272ac57cbe25143f3719/659_rd-T1-TRNA-1_A23MVY2LT4_1.fastp.html 33/659_rd-T1-TRNA-1_A23MVY2LT4_1.fastp.html")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5c/1543ae395a71311faebeceaf7b5181/659_cTi-T1-TRNA-1_A23MVY2LT4_2.log 263/659_cTi-T1-TRNA-1_A23MVY2LT4_2.log")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7e/6fdfb7ee68e4354142e61c0ca4c318/PX_FFPE_stm_TRNA_nat_03_A23MVY2LT4_1.junction_annotation.log 1235/PX_FFPE_stm_TRNA_nat_03_A23MVY2LT4_1.junction_annotation.log")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/60/0dcdd5201429e0f90afaa50f9adbbf/659_bCu-T1-TRNA-1_A23MVY2LT4_2_rseqc_extra_mqc.tsv 1352/659_bCu-T1-TRNA-1_A23MVY2LT4_2_rseqc_extra_mqc.tsv")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d6/d149102910e55995392f1c8506ee95/659_dES-T1-TRNA-1_A23MVY2LT4_1.inner_distance_freq.txt 1147/659_dES-T1-TRNA-1_A23MVY2LT4_1.inner_distance_freq.txt")
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    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d8/68d0d65d9f17799d8e2a58fad9ade3/PX_FFPE_kid_TRNA_nat_01_A23MVY2LT4_1_contamination_mqc.tsv 1543/PX_FFPE_kid_TRNA_nat_01_A23MVY2LT4_1_contamination_mqc.tsv")
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    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a9/6ab0a7a44005a0398e39a7cae2d896/659_cRa-T1-TRNA-1_A23MVY2LT4_2.ReadsPerGene.out.tab 955/659_cRa-T1-TRNA-1_A23MVY2LT4_2.ReadsPerGene.out.tab")
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    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7f/68c6a803d12ec3705fce388fbe48e3/PX_FFPE_pan_TRNA_nat_01_A23MVY2LT4_1.lc_extrap.txt 2134/PX_FFPE_pan_TRNA_nat_01_A23MVY2LT4_1.lc_extrap.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0d/5336d55ce3e2ceba70a11333e7c941/659_6i-T1-TRNA-1_A23MVY2LT4_1_trimmed_2_fastqc.zip 604/659_6i-T1-TRNA-1_A23MVY2LT4_1_trimmed_2_fastqc.zip")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2a/5a179bb7bdba097b610e7e0bc8c489/659_djb-T1-TRNA-1_A23MVY2LT4_2.junctionSaturation_plot.r 1775/659_djb-T1-TRNA-1_A23MVY2LT4_2.junctionSaturation_plot.r")
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    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d1/30d3449f7b56fe85c43f69b97c4829/659_bGW-T1-TRNA-1_A23MVY2LT4_2_seqtool_mqc.tsv 1997/659_bGW-T1-TRNA-1_A23MVY2LT4_2_seqtool_mqc.tsv")
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    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3e/30527593d1e188b2eb9d92d2a19d86/659_d01-T1-TRNA-1_A23MVY2LT4_1_combined_fusions_arriba_visualisation.pdf 2322/659_d01-T1-TRNA-1_A23MVY2LT4_1_combined_fusions_arriba_visualisation.pdf")
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    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9f/8418866d83b2bcf80fdf3372f66768/659_dc8-T1-TRNA-1_A23MVY2LT4_1.fastp.html 30/659_dc8-T1-TRNA-1_A23MVY2LT4_1.fastp.html")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fd/b81387be7c2e6d465f6e0b88d096f9/659_ezg-T1-TRNA-1_A23MVY2LT4_1.pos.DupRate.xls 1727/659_ezg-T1-TRNA-1_A23MVY2LT4_1.pos.DupRate.xls")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1b/0fed5d1f6b8129ef63695404f9ec0f/659_Dl-T1-TRNA-1_A23MVY2LT4_2_2_fastqc.zip 410/659_Dl-T1-TRNA-1_A23MVY2LT4_2_2_fastqc.zip")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/60/f23a4447c075069227d727c9d3e00e/659_cIX-T1-TRNA-1_A23MVY2LT4_2_2_fastqc.zip 544/659_cIX-T1-TRNA-1_A23MVY2LT4_2_2_fastqc.zip")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/dc/92482f34132f19d9942348ae2e12ff/659_cAd-T1-TRNA-1_A23MVY2LT4_2.Log.final.out 797/659_cAd-T1-TRNA-1_A23MVY2LT4_2.Log.final.out")
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    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e5/9d600ecdb93cc82f0e9ae0a05b74ea/659_Mt-T1-TRNA-1_A23MVY2LT4_2.md.bam.metrics 1853/659_Mt-T1-TRNA-1_A23MVY2LT4_2.md.bam.metrics")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c8/349d0461b5bd33da01dcda72bf0bbf/659_cRa-T1-TRNA-1_A23MVY2LT4_1_2_fastqc.zip 576/659_cRa-T1-TRNA-1_A23MVY2LT4_1_2_fastqc.zip")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e7/13195c3225c0ecb4e6e83390959f14/659_cRa-T1-TRNA-1_A23MVY2LT4_1.inner_distance_freq.txt 1152/659_cRa-T1-TRNA-1_A23MVY2LT4_1.inner_distance_freq.txt")
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    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/71/50c104d0e14bf646521568386c5375/659_6i-T1-TRNA-1_A23MVY2LT4_1_seqtool_mqc.tsv 1933/659_6i-T1-TRNA-1_A23MVY2LT4_1_seqtool_mqc.tsv")
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    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/23/2ef1bc445a0b747c93f02bd39ec134/PX_FFPE_gb_TRNA_nat_02_A23MVY2LT4_1.log 258/PX_FFPE_gb_TRNA_nat_02_A23MVY2LT4_1.log")
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    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fd/4112c93a388b49a14542b398b980db/PX_FFPE_bld_TRNA_nat_02_A23MVY2LT4_1_preseq_mqc.tsv 2255/PX_FFPE_bld_TRNA_nat_02_A23MVY2LT4_1_preseq_mqc.tsv")
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    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bf/eb825d13dd08492d26afdec4e4907c/659_epP-T1-TRNA-1_A23MVY2LT4_2.junction_annotation.log 1249/659_epP-T1-TRNA-1_A23MVY2LT4_2.junction_annotation.log")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fb/1febe203f7077b58fef883407c416a/PX_FFPE_kid_TRNA_nat_02_A23MVY2LT4_1_2_fastqc.zip 466/PX_FFPE_kid_TRNA_nat_02_A23MVY2LT4_1_2_fastqc.zip")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2b/982f9ed42c43353bd25810eb870b0f/PX_FFPE_pan_TRNA_nat_03_A23MVY2LT4_1.read_distribution.txt 1468/PX_FFPE_pan_TRNA_nat_03_A23MVY2LT4_1.read_distribution.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/75/2c14c32f1be405ffa184c4334b7491/PX_FFPE_bld_TRNA_nat_04_A23MVY2LT4_1_seqtool_mqc.tsv 1959/PX_FFPE_bld_TRNA_nat_04_A23MVY2LT4_1_seqtool_mqc.tsv")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/85/bc9eb1528e98ea5a459a0aee1c4f46/PX_FFPE_pan_TRNA_nat_02_A23MVY2LT4_1.attempt1.command.log 2052/PX_FFPE_pan_TRNA_nat_02_A23MVY2LT4_1.attempt1.command.log")
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    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/75/d0fd4d9d16b854ab1443b520657851/PX_FFPE_stm_TRNA_nat_01_A23MVY2LT4_1.infer_experiment.txt 1038/PX_FFPE_stm_TRNA_nat_01_A23MVY2LT4_1.infer_experiment.txt")
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    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8d/9deb8d01dc0ffcd4c16df6fb9f78c8/659_buD-T1-TRNA-1_A23MVY2LT4_1_trimmed_2_fastqc.zip 672/659_buD-T1-TRNA-1_A23MVY2LT4_1_trimmed_2_fastqc.zip")
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    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a6/5d2dd20de61bf1c852a3ab5cf6ebba/PX_FFPE_kid_TRNA_nat_01_A23MVY2LT4_1_seqtool_mqc.tsv 1927/PX_FFPE_kid_TRNA_nat_01_A23MVY2LT4_1_seqtool_mqc.tsv")
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    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ea/970dd0e9057bcb8ed8c3a7a68d17d2/659_bUW-T1-TRNA-1_A23MVY2LT4_2_kallisto_mqc.tsv 377/659_bUW-T1-TRNA-1_A23MVY2LT4_2_kallisto_mqc.tsv")
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    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c2/6e5955573b6a11e89997ac0461e0ae/PX_FFPE_kid_TRNA_nat_01_A23MVY2LT4_1.lc_extrap.txt 2120/PX_FFPE_kid_TRNA_nat_01_A23MVY2LT4_1.lc_extrap.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b0/d341816fd286060891342498825fa1/PX_FFPE_stm_TRNA_nat_01_A23MVY2LT4_1.lc_extrap.txt 2166/PX_FFPE_stm_TRNA_nat_01_A23MVY2LT4_1.lc_extrap.txt")
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    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/95/0b276ab55153ea3b480615ed952537/659_Dl-T1-TRNA-1_A23MVY2LT4_1.ReadsPerGene.out.tab 882/659_Dl-T1-TRNA-1_A23MVY2LT4_1.ReadsPerGene.out.tab")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/eb/7e2cf9f7f1c542109bdebfcd21d9a9/659_ezg-T1-TRNA-1_A23MVY2LT4_1.fastp.html 79/659_ezg-T1-TRNA-1_A23MVY2LT4_1.fastp.html")
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    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5c/6b8887c08b3245fa90e4fcd2017ebf/659_dm4-T1-TRNA-1_A23MVY2LT4_2_combined_fusions_arriba_visualisation.pdf 2310/659_dm4-T1-TRNA-1_A23MVY2LT4_2_combined_fusions_arriba_visualisation.pdf")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6d/0ecf3c02adc0576bd70e9ef7b01716/659_bUW-T1-TRNA-1_A23MVY2LT4_2.read_distribution.txt 1520/659_bUW-T1-TRNA-1_A23MVY2LT4_2.read_distribution.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/58/e638f9d3baa002296be0934a7ab84f/PX_FFPE_esp_TRNA_nat_02_A23MVY2LT4_1_preseq_mqc.tsv 2273/PX_FFPE_esp_TRNA_nat_02_A23MVY2LT4_1_preseq_mqc.tsv")
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    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/af/f87e06b7733a740815e29af2defbcd/659_c95-T1-TRNA-1_A23MVY2LT4_1.junctionSaturation_plot.r 1804/659_c95-T1-TRNA-1_A23MVY2LT4_1.junctionSaturation_plot.r")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/33/03beffb4b0a7b47dcaddf5837408ec/659_rd-T1-TRNA-1_A23MVY2LT4_1_trimmed_1_fastqc.zip 617/659_rd-T1-TRNA-1_A23MVY2LT4_1_trimmed_1_fastqc.zip")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3b/39e437cddc8922174ddfac127382d5/PX_FFPE_kid_TRNA_nat_02_A23MVY2LT4_1.ReadsPerGene.out.tab 891/PX_FFPE_kid_TRNA_nat_02_A23MVY2LT4_1.ReadsPerGene.out.tab")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/00/438c34492826bf71f464d68d07463b/659_cTi-T1-TRNA-1_A23MVY2LT4_1.fastp.html 68/659_cTi-T1-TRNA-1_A23MVY2LT4_1.fastp.html")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f8/0952999b8a474a3707b6d8477d8161/PX_FFPE_pan_TRNA_nat_01_A23MVY2LT4_1.read_distribution.txt 1478/PX_FFPE_pan_TRNA_nat_01_A23MVY2LT4_1.read_distribution.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/17/86852fc6e400ddfdcbc43bf2e107dc/659_cAd-T1-TRNA-1_A23MVY2LT4_2_kallisto_mqc.tsv 365/659_cAd-T1-TRNA-1_A23MVY2LT4_2_kallisto_mqc.tsv")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b9/c5121a9ed97b55aead7db836f721bd/PX_FFPE_stm_TRNA_nat_02_A23MVY2LT4_1.attempt1.command.log 2031/PX_FFPE_stm_TRNA_nat_02_A23MVY2LT4_1.attempt1.command.log")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1a/b180b96f5a9fab0705102d3abdbb27/659_dcz-T1-TRNA-1_A23MVY2LT4_2_2_fastqc.zip 392/659_dcz-T1-TRNA-1_A23MVY2LT4_2_2_fastqc.zip")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/91/46bf9c6d2fb753b91ef8c3911126dd/659_ciJ-T1-TRNA-1_A23MVY2LT4_1_contamination_mqc.tsv 1598/659_ciJ-T1-TRNA-1_A23MVY2LT4_1_contamination_mqc.tsv")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/63/a74a75b443dab7e45a01930abb3ba9/659_Dl-T1-TRNA-1_A23MVY2LT4_1.lc_extrap.txt 2130/659_Dl-T1-TRNA-1_A23MVY2LT4_1.lc_extrap.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/03/0383ceca3fdf20c1517baa9180f1f4/659_d01-T1-TRNA-1_A23MVY2LT4_2.lc_extrap.txt 2133/659_d01-T1-TRNA-1_A23MVY2LT4_2.lc_extrap.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ea/7b0a4fb5f84395d530f19e9bbce38e/659_bua-T1-TRNA-1_A23MVY2LT4_2_trimmed_1_fastqc.zip 691/659_bua-T1-TRNA-1_A23MVY2LT4_2_trimmed_1_fastqc.zip")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/be/e53af2347232b540e89fab3b277745/659_gK-T1-TRNA-1_A23MVY2LT4_2.attempt1.command.log 2053/659_gK-T1-TRNA-1_A23MVY2LT4_2.attempt1.command.log")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ee/6b3fc2eb432b3f2a89ac293742be83/659_djb-T1-TRNA-1_A23MVY2LT4_2.inner_distance_freq.txt 1106/659_djb-T1-TRNA-1_A23MVY2LT4_2.inner_distance_freq.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e0/fe7566140e86f2fe5313e65518dee0/659_bTo-T1-TRNA-1_A23MVY2LT4_1_trimmed_1_fastqc.zip 743/659_bTo-T1-TRNA-1_A23MVY2LT4_1_trimmed_1_fastqc.zip")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d1/d72962c7628251a8b212b9a8f05d5d/PX_FFPE_bld_TRNA_nat_03_A23MVY2LT4_1_trimmed_1_fastqc.zip 749/PX_FFPE_bld_TRNA_nat_03_A23MVY2LT4_1_trimmed_1_fastqc.zip")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/55/334f28f7d7d0adea530c3a68dfb6ef/659_bua-T1-TRNA-1_A23MVY2LT4_1.pos.DupRate.xls 1665/659_bua-T1-TRNA-1_A23MVY2LT4_1.pos.DupRate.xls")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0e/cd3bb537362828bc67050981571aac/PX_FFPE_bld_TRNA_nat_03_A23MVY2LT4_1.attempt1.command.log 2068/PX_FFPE_bld_TRNA_nat_03_A23MVY2LT4_1.attempt1.command.log")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e7/ebf6ae9399bc6045b0c6b3ea392f8c/PX_FFPE_stm_TRNA_nat_01_A23MVY2LT4_1.fastp.json 188/PX_FFPE_stm_TRNA_nat_01_A23MVY2LT4_1.fastp.json")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/29/e5e1434bc9b315f424012350d93c64/659_gK-T1-TRNA-1_A23MVY2LT4_2.pos.DupRate.xls 1673/659_gK-T1-TRNA-1_A23MVY2LT4_2.pos.DupRate.xls")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/dd/3d6e20b4c140d1985880f3ff42af38/659_cRB-T1-TRNA-1_A23MVY2LT4_1.md.bam.metrics 1857/659_cRB-T1-TRNA-1_A23MVY2LT4_1.md.bam.metrics")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4c/4878c28d3bebd436e5dd9866541b2e/659_bCu-T1-TRNA-1_A23MVY2LT4_1.lc_extrap.txt 2143/659_bCu-T1-TRNA-1_A23MVY2LT4_1.lc_extrap.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c4/452bf77ccccc3b51010cf6bc7b07d2/659_rd-T1-TRNA-1_A23MVY2LT4_2.inner_distance_freq.txt 1135/659_rd-T1-TRNA-1_A23MVY2LT4_2.inner_distance_freq.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ca/1e1cb1c73fcdb163679d192f934d6a/659_dm4-T1-TRNA-1_A23MVY2LT4_1.fastp.html 16/659_dm4-T1-TRNA-1_A23MVY2LT4_1.fastp.html")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/da/4ba03471e986dce965e1810ec6e981/FFPE_HD789_01_RNA_13_A23MVY2LT4_1.junction_annotation.log 1189/FFPE_HD789_01_RNA_13_A23MVY2LT4_1.junction_annotation.log")
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    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a9/ba196e97a4b81643f82e5aa87c6d6b/659_cfy-T1-TRNA-1_A23MVY2LT4_1_2_fastqc.zip 534/659_cfy-T1-TRNA-1_A23MVY2LT4_1_2_fastqc.zip")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7c/9c50868cb03852c4133930b35fdfb0/659_d01-T1-TRNA-1_A23MVY2LT4_2.inner_distance_freq.txt 1100/659_d01-T1-TRNA-1_A23MVY2LT4_2.inner_distance_freq.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e2/d8c9fc4e24ae91f0d2edb4340d4b63/659_cRB-T1-TRNA-1_A23MVY2LT4_1_1_fastqc.zip 443/659_cRB-T1-TRNA-1_A23MVY2LT4_1_1_fastqc.zip")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/88/e4b6ee22f1e47fed57e7e95a041ded/659_dcz-T1-TRNA-1_A23MVY2LT4_2.infer_experiment.txt 965/659_dcz-T1-TRNA-1_A23MVY2LT4_2.infer_experiment.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/78/a9928991aa80f9f852e737a9ff5067/659_bua-T1-TRNA-1_A23MVY2LT4_2.pos.DupRate.xls 1725/659_bua-T1-TRNA-1_A23MVY2LT4_2.pos.DupRate.xls")
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    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/48/752a1157b5da526c097e22d57323d5/659_dc8-T1-TRNA-1_A23MVY2LT4_1.md.bam.metrics 1902/659_dc8-T1-TRNA-1_A23MVY2LT4_1.md.bam.metrics")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ac/de51e4073283f6638267b6efc68b40/659_eHw-T1-TRNA-1_A23MVY2LT4_2_preseq_mqc.tsv 2285/659_eHw-T1-TRNA-1_A23MVY2LT4_2_preseq_mqc.tsv")
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    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/09/90361223b4c2c2a7208a73ac8dbcbf/659_ciJ-T1-TRNA-1_A23MVY2LT4_1.attempt1.command.log 2092/659_ciJ-T1-TRNA-1_A23MVY2LT4_1.attempt1.command.log")
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    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5b/b65e031c59a19cdf8dc46f4db4270d/659_cWx-T1-TRNA-1_A23MVY2LT4_2_seqtool_mqc.tsv 1967/659_cWx-T1-TRNA-1_A23MVY2LT4_2_seqtool_mqc.tsv")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bd/98a31bcfdbf424a468888284bf7e5f/659_epP-T1-TRNA-1_A23MVY2LT4_2.ReadsPerGene.out.tab 961/659_epP-T1-TRNA-1_A23MVY2LT4_2.ReadsPerGene.out.tab")
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    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2e/66a46966ce495451b30266c54dc03c/PX_FFPE_pst_TRNA_nat_02_A23MVY2LT4_1_kallisto_mqc.tsv 374/PX_FFPE_pst_TRNA_nat_02_A23MVY2LT4_1_kallisto_mqc.tsv")
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    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4d/9d6115f1b11d2143242c071ddb76ff/659_ciZ-T1-TRNA-1_A23MVY2LT4_1_combined_fusions_arriba_visualisation.pdf 2342/659_ciZ-T1-TRNA-1_A23MVY2LT4_1_combined_fusions_arriba_visualisation.pdf")
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    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/de/343988e2d76d414e76cea51fba9b47/659_dcz-T1-TRNA-1_A23MVY2LT4_1.infer_experiment.txt 966/659_dcz-T1-TRNA-1_A23MVY2LT4_1.infer_experiment.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b0/d341816fd286060891342498825fa1/PX_FFPE_stm_TRNA_nat_01_A23MVY2LT4_1.attempt1.command.log 2070/PX_FFPE_stm_TRNA_nat_01_A23MVY2LT4_1.attempt1.command.log")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1a/bd8a7491fe1aceabbc116a02546a7e/659_ecd-T1-TRNA-1_A23MVY2LT4_1_kallisto_mqc.tsv 318/659_ecd-T1-TRNA-1_A23MVY2LT4_1_kallisto_mqc.tsv")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b0/5148ed9673b90a51ae485c91083ba7/659_bTo-T1-TRNA-1_A23MVY2LT4_2.junctionSaturation_plot.r 1802/659_bTo-T1-TRNA-1_A23MVY2LT4_2.junctionSaturation_plot.r")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d3/31553060bcbdb05e745173e99e9799/PX_FFPE_stm_TRNA_nat_03_A23MVY2LT4_1.junctionSaturation_plot.r 1815/PX_FFPE_stm_TRNA_nat_03_A23MVY2LT4_1.junctionSaturation_plot.r")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/59/d85cbd574e622818b92b5585955903/659_dcz-T1-TRNA-1_A23MVY2LT4_2.md.bam.metrics 1829/659_dcz-T1-TRNA-1_A23MVY2LT4_2.md.bam.metrics")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/89/3b6624a4919e3521dbdfb6dfd5a99f/NTC_0001_0001_A23MVY2LT4_1_kallisto_mqc.tsv 291/NTC_0001_0001_A23MVY2LT4_1_kallisto_mqc.tsv")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/95/0b276ab55153ea3b480615ed952537/659_Dl-T1-TRNA-1_A23MVY2LT4_1.Log.final.out 786/659_Dl-T1-TRNA-1_A23MVY2LT4_1.Log.final.out")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cb/9815340aa7bd50454e2f8a99912f3e/659_Lx-T1-TRNA-1_A23MVY2LT4_1.bam_stat.txt 1265/659_Lx-T1-TRNA-1_A23MVY2LT4_1.bam_stat.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7f/966e3cf5e17030624bf552fd0b5f3b/659_6i-T1-TRNA-1_A23MVY2LT4_2.junctionSaturation_plot.r 1742/659_6i-T1-TRNA-1_A23MVY2LT4_2.junctionSaturation_plot.r")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/26/6348f15c9d780af74b875ba2bbc516/PX_FFPE_pan_TRNA_nat_02_A23MVY2LT4_1_2_fastqc.zip 434/PX_FFPE_pan_TRNA_nat_02_A23MVY2LT4_1_2_fastqc.zip")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/93/ad12e3a0e303610c37ff4bd6ecc5a2/PX_FFPE_bld_TRNA_nat_03_A23MVY2LT4_1.infer_experiment.txt 1009/PX_FFPE_bld_TRNA_nat_03_A23MVY2LT4_1.infer_experiment.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5b/2a1cfdda0a07b2a15961f9a9f7747c/PX_FFPE_stm_TRNA_nat_03_A23MVY2LT4_1.infer_experiment.txt 1052/PX_FFPE_stm_TRNA_nat_03_A23MVY2LT4_1.infer_experiment.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f1/85418cf2318d5d5ba4dc29302fe186/PX_FFPE_pst_TRNA_nat_02_A23MVY2LT4_1.Log.final.out 789/PX_FFPE_pst_TRNA_nat_02_A23MVY2LT4_1.Log.final.out")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/21/69a9bbfd1bffdc57136ae08676eebd/659_ecd-T1-TRNA-1_A23MVY2LT4_1.bam_stat.txt 1289/659_ecd-T1-TRNA-1_A23MVY2LT4_1.bam_stat.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/79/c7886830d131074d3b45e5edfa8e84/659_dts-T1-TRNA-1_A23MVY2LT4_2.bam_stat.txt 1332/659_dts-T1-TRNA-1_A23MVY2LT4_2.bam_stat.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/76/ff98237ca8ae3ba1fac34d146bf36d/659_cRa-T1-TRNA-1_A23MVY2LT4_2.junction_annotation.log 1246/659_cRa-T1-TRNA-1_A23MVY2LT4_2.junction_annotation.log")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ab/394c91c4e6cccdf8531dff6bb3df10/659_Mt-T1-TRNA-1_A23MVY2LT4_2_2_fastqc.zip 422/659_Mt-T1-TRNA-1_A23MVY2LT4_2_2_fastqc.zip")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f2/ce0114da8a80e5ea97bc6c87a7a14b/659_bhK-T1-TRNA-1_A23MVY2LT4_2_2_fastqc.zip 540/659_bhK-T1-TRNA-1_A23MVY2LT4_2_2_fastqc.zip")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d8/08538564e29e6d4068f445c3d9d340/PX_FFPE_bld_TRNA_nat_03_A23MVY2LT4_1.junction_annotation.log 1203/PX_FFPE_bld_TRNA_nat_03_A23MVY2LT4_1.junction_annotation.log")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b1/07bbe6a82ed3863c9191b9ab307970/659_dES-T1-TRNA-1_A23MVY2LT4_1.log 231/659_dES-T1-TRNA-1_A23MVY2LT4_1.log")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/92/48d29134154b25c7056cd5208b1c6a/659_bNS-T1-TRNA-1_A23MVY2LT4_1.inner_distance_freq.txt 1132/659_bNS-T1-TRNA-1_A23MVY2LT4_1.inner_distance_freq.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2d/ab68d5082338b857499a8f681ba3cc/659_dc8-T1-TRNA-1_A23MVY2LT4_1.junction_annotation.log 1237/659_dc8-T1-TRNA-1_A23MVY2LT4_1.junction_annotation.log")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1e/f4a1fffec1370bf7d399b95a36d6be/659_bUW-T1-TRNA-1_A23MVY2LT4_1.attempt1.command.log 2027/659_bUW-T1-TRNA-1_A23MVY2LT4_1.attempt1.command.log")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b9/802f498b4ab4bf76266f01cea00fee/659_bUW-T1-TRNA-1_A23MVY2LT4_2_contamination_mqc.tsv 1632/659_bUW-T1-TRNA-1_A23MVY2LT4_2_contamination_mqc.tsv")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/39/c8ab962064a7d8d35b3946becdc8da/659_bGW-T1-TRNA-1_A23MVY2LT4_1.junctionSaturation_plot.r 1795/659_bGW-T1-TRNA-1_A23MVY2LT4_1.junctionSaturation_plot.r")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/06/5fe5b284ce764d9c3efd9d216bcc35/PX_FFPE_kid_TRNA_nat_03_A23MVY2LT4_1.attempt1.command.log 2020/PX_FFPE_kid_TRNA_nat_03_A23MVY2LT4_1.attempt1.command.log")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a3/87fb07343d841fd0f2a7f2e6a94df1/659_6i-T1-TRNA-1_A23MVY2LT4_2.Log.final.out 782/659_6i-T1-TRNA-1_A23MVY2LT4_2.Log.final.out")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9a/382446e436aade550a12a4cabe1344/PX_FFPE_stm_TRNA_nat_03_A23MVY2LT4_1_preseq_mqc.tsv 2293/PX_FFPE_stm_TRNA_nat_03_A23MVY2LT4_1_preseq_mqc.tsv")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/da/ede9e7b30a0c10c64710c77686d719/659_c95-T1-TRNA-1_A23MVY2LT4_1_combined_fusions_arriba_visualisation.pdf 2398/659_c95-T1-TRNA-1_A23MVY2LT4_1_combined_fusions_arriba_visualisation.pdf")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b5/766a59f5f4374aa25fcec50b2ff094/FFPE_HD789_01_RNA_13_A23MVY2LT4_1_seqtool_mqc.tsv 1963/FFPE_HD789_01_RNA_13_A23MVY2LT4_1_seqtool_mqc.tsv")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/78/2a692590f9e0504108a93cac278f3c/659_epP-T1-TRNA-1_A23MVY2LT4_1_kallisto_mqc.tsv 357/659_epP-T1-TRNA-1_A23MVY2LT4_1_kallisto_mqc.tsv")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6a/6c55b6d1c7ab6bd525530fb30b31ed/659_cfy-T1-TRNA-1_A23MVY2LT4_2.junctionSaturation_plot.r 1784/659_cfy-T1-TRNA-1_A23MVY2LT4_2.junctionSaturation_plot.r")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1a/24eaa4379a90218b2d8eac4746e50e/659_buD-T1-TRNA-1_A23MVY2LT4_1_seqtool_mqc.tsv 1962/659_buD-T1-TRNA-1_A23MVY2LT4_1_seqtool_mqc.tsv")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c4/92b95e353b4185b7ff3ecbabb5dd9a/659_bQZ-T1-TRNA-1_A23MVY2LT4_1.infer_experiment.txt 1013/659_bQZ-T1-TRNA-1_A23MVY2LT4_1.infer_experiment.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b4/4f5b3722d77db7cb531c40dba24195/659_dts-T1-TRNA-1_A23MVY2LT4_2.lc_extrap.txt 2193/659_dts-T1-TRNA-1_A23MVY2LT4_2.lc_extrap.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d0/d05e761dc945b8f5ae04243f3ac43c/659_bua-T1-TRNA-1_A23MVY2LT4_2_seqtool_mqc.tsv 2008/659_bua-T1-TRNA-1_A23MVY2LT4_2_seqtool_mqc.tsv")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/22/3e5731164a6d983c9b62295d33b28e/659_rd-T1-TRNA-1_A23MVY2LT4_1.attempt1.command.log 2036/659_rd-T1-TRNA-1_A23MVY2LT4_1.attempt1.command.log")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7f/3496ea5553beb2a103cc6345833bf6/NTC_0001_0001_A23MVY2LT4_1.read_distribution.txt 1443/NTC_0001_0001_A23MVY2LT4_1.read_distribution.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9a/a2cf169fceb670fd782e1416fb9554/659_dm4-T1-TRNA-1_A23MVY2LT4_2.pos.DupRate.xls 1641/659_dm4-T1-TRNA-1_A23MVY2LT4_2.pos.DupRate.xls")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/16/ccfe4a8ea5755b8be5d41d2046e49c/659_Lx-T1-TRNA-1_A23MVY2LT4_1.infer_experiment.txt 975/659_Lx-T1-TRNA-1_A23MVY2LT4_1.infer_experiment.txt")
    downloads+=("nxf_s3_download s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0014_0015/A23MVY2LT4/nfcore_rnafusion__73d51683--20260607-225254/pipeline_info/nf_core_pipeline_software_mqc_versions.yml 2399/nf_core_pipeline_software_mqc_versions.yml")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4d/2c64369ca33553c3294ef052e5d55d/PX_FFPE_esp_TRNA_nat_02_A23MVY2LT4_1_rseqc_extra_mqc.tsv 1410/PX_FFPE_esp_TRNA_nat_02_A23MVY2LT4_1_rseqc_extra_mqc.tsv")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1d/4135d356b368ca996d5b2887afe346/659_bGc-T1-TRNA-1_A23MVY2LT4_2.ReadsPerGene.out.tab 890/659_bGc-T1-TRNA-1_A23MVY2LT4_2.ReadsPerGene.out.tab")
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    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8c/0a5698927cb0e175a7f3cb4df69340/659_Dl-T1-TRNA-1_A23MVY2LT4_2.fastp.html 9/659_Dl-T1-TRNA-1_A23MVY2LT4_2.fastp.html")
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    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4f/53e6068792afb0e67d6a70324fe107/659_djb-T1-TRNA-1_A23MVY2LT4_2_1_fastqc.zip 527/659_djb-T1-TRNA-1_A23MVY2LT4_2_1_fastqc.zip")
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    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b1/78f13ef392884f1a97cbb9d0a60c9e/659_bGc-T1-TRNA-1_A23MVY2LT4_1.read_distribution.txt 1514/659_bGc-T1-TRNA-1_A23MVY2LT4_1.read_distribution.txt")
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    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/18/895b94157407c9c9a6bf49d84e25de/659_djb-T1-TRNA-1_A23MVY2LT4_2_kallisto_mqc.tsv 361/659_djb-T1-TRNA-1_A23MVY2LT4_2_kallisto_mqc.tsv")
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    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/33/f3157eed24c190f5b3c5f01b5e3bea/659_bUW-T1-TRNA-1_A23MVY2LT4_1.pos.DupRate.xls 1643/659_bUW-T1-TRNA-1_A23MVY2LT4_1.pos.DupRate.xls")
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    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6e/955e1a1028bcdba8362bcd72e1da39/659_Lx-T1-TRNA-1_A23MVY2LT4_1.fastp.html 18/659_Lx-T1-TRNA-1_A23MVY2LT4_1.fastp.html")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6b/02f7de58ea6e19a12acc24a7eb8410/659_bhK-T1-TRNA-1_A23MVY2LT4_2.inner_distance_freq.txt 1137/659_bhK-T1-TRNA-1_A23MVY2LT4_2.inner_distance_freq.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d2/44a7500b6168a3bdd2faa1a6b99459/659_cRB-T1-TRNA-1_A23MVY2LT4_1_kallisto_mqc.tsv 322/659_cRB-T1-TRNA-1_A23MVY2LT4_1_kallisto_mqc.tsv")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/61/31dfd4a6f553691622c8161fef108a/PX_FFPE_kid_TRNA_nat_02_A23MVY2LT4_1.junctionSaturation_plot.r 1758/PX_FFPE_kid_TRNA_nat_02_A23MVY2LT4_1.junctionSaturation_plot.r")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/64/525c123b94a8f94c835b51df93f933/659_bTo-T1-TRNA-1_A23MVY2LT4_2.bam_stat.txt 1333/659_bTo-T1-TRNA-1_A23MVY2LT4_2.bam_stat.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2f/55b43b3ea0b3115f28c3424ffc13f7/659_dES-T1-TRNA-1_A23MVY2LT4_2_trimmed_1_fastqc.zip 621/659_dES-T1-TRNA-1_A23MVY2LT4_2_trimmed_1_fastqc.zip")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/db/e822b73d09ba71829a7ea4ecc56fb6/659_bGW-T1-TRNA-1_A23MVY2LT4_1.ReadsPerGene.out.tab 922/659_bGW-T1-TRNA-1_A23MVY2LT4_1.ReadsPerGene.out.tab")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4a/d17c57f9c396901f22df727f0145ee/659_ezg-T1-TRNA-1_A23MVY2LT4_2.junction_annotation.log 1204/659_ezg-T1-TRNA-1_A23MVY2LT4_2.junction_annotation.log")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/aa/d526557d9396d16f0e3e8ddc1e2cff/659_ciJ-T1-TRNA-1_A23MVY2LT4_1.junctionSaturation_plot.r 1785/659_ciJ-T1-TRNA-1_A23MVY2LT4_1.junctionSaturation_plot.r")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/31/831fa0e0a84d22d25a2feb8ebbc56c/659_cWx-T1-TRNA-1_A23MVY2LT4_2.Log.final.out 824/659_cWx-T1-TRNA-1_A23MVY2LT4_2.Log.final.out")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cc/0c7da99a15e1957d41013d6eaae962/PX_FFPE_stm_TRNA_nat_03_A23MVY2LT4_1.Log.final.out 860/PX_FFPE_stm_TRNA_nat_03_A23MVY2LT4_1.Log.final.out")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a3/edf60676a2150c44a6849a7f9e98f0/659_ciZ-T1-TRNA-1_A23MVY2LT4_2.lc_extrap.txt 2156/659_ciZ-T1-TRNA-1_A23MVY2LT4_2.lc_extrap.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2d/4134efd8ae323f04939fde779f2e32/659_Dl-T1-TRNA-1_A23MVY2LT4_1_1_fastqc.zip 431/659_Dl-T1-TRNA-1_A23MVY2LT4_1_1_fastqc.zip")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1c/0dd2f46be06a5784e378147ac67561/659_bUW-T1-TRNA-1_A23MVY2LT4_1.junctionSaturation_plot.r 1739/659_bUW-T1-TRNA-1_A23MVY2LT4_1.junctionSaturation_plot.r")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f7/db0f57d27fa89a09535fa18656ada1/659_bNS-T1-TRNA-1_A23MVY2LT4_2.fastp.json 178/659_bNS-T1-TRNA-1_A23MVY2LT4_2.fastp.json")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e0/47062375c093433b6de40fb875ad7d/659_cVw-T1-TRNA-1_A23MVY2LT4_1.attempt1.command.log 2083/659_cVw-T1-TRNA-1_A23MVY2LT4_1.attempt1.command.log")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ba/d8afc514efe14a4d65d1d010d5fd27/659_bTo-T1-TRNA-1_A23MVY2LT4_2.fastp.json 159/659_bTo-T1-TRNA-1_A23MVY2LT4_2.fastp.json")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/85/4c58821c404301a6ebc40f9006e4c7/659_bTo-T1-TRNA-1_A23MVY2LT4_2.Log.final.out 844/659_bTo-T1-TRNA-1_A23MVY2LT4_2.Log.final.out")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/63/b19e3df4a9647bf6593faa8bf90f32/659_Dl-T1-TRNA-1_A23MVY2LT4_1.log 212/659_Dl-T1-TRNA-1_A23MVY2LT4_1.log")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/88/859db6fe8a0970b12c85c9bdc58f28/659_gK-T1-TRNA-1_A23MVY2LT4_2.infer_experiment.txt 989/659_gK-T1-TRNA-1_A23MVY2LT4_2.infer_experiment.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/72/4358e7560ba1d84a15e841abbf785c/659_bua-T1-TRNA-1_A23MVY2LT4_1.bam_stat.txt 1318/659_bua-T1-TRNA-1_A23MVY2LT4_1.bam_stat.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/70/5c67bb1084212f1b9430dd2af18085/659_cTi-T1-TRNA-1_A23MVY2LT4_2.lc_extrap.txt 2199/659_cTi-T1-TRNA-1_A23MVY2LT4_2.lc_extrap.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/22/8f9bf3b1147a15ed9a3cb863bfd3e3/659_eHw-T1-TRNA-1_A23MVY2LT4_2.ReadsPerGene.out.tab 943/659_eHw-T1-TRNA-1_A23MVY2LT4_2.ReadsPerGene.out.tab")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4b/3143660e8d278746f67eb061d91dcd/PX_FFPE_kid_TRNA_nat_01_A23MVY2LT4_1.bam_stat.txt 1255/PX_FFPE_kid_TRNA_nat_01_A23MVY2LT4_1.bam_stat.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/13/a3ce206248c2ea57ffff658f5fa8ee/659_dts-T1-TRNA-1_A23MVY2LT4_1.log 228/659_dts-T1-TRNA-1_A23MVY2LT4_1.log")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/57/0b3aa578b5cf960c7bd900d7d071ef/659_cfy-T1-TRNA-1_A23MVY2LT4_2.bam_stat.txt 1294/659_cfy-T1-TRNA-1_A23MVY2LT4_2.bam_stat.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/04/697687378e9148962bcb11ff36b010/659_dm4-T1-TRNA-1_A23MVY2LT4_1.ReadsPerGene.out.tab 877/659_dm4-T1-TRNA-1_A23MVY2LT4_1.ReadsPerGene.out.tab")
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    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6d/f7eff2546185e9e1bc7746549530d6/659_bGW-T1-TRNA-1_A23MVY2LT4_2.fastp.html 61/659_bGW-T1-TRNA-1_A23MVY2LT4_2.fastp.html")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/87/78c1ebdd968732de7c61a754464e02/659_dts-T1-TRNA-1_A23MVY2LT4_2_trimmed_2_fastqc.zip 756/659_dts-T1-TRNA-1_A23MVY2LT4_2_trimmed_2_fastqc.zip")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5d/c09e70b705608e7365ba205ed57fd1/659_cRa-T1-TRNA-1_A23MVY2LT4_1.fastp.html 67/659_cRa-T1-TRNA-1_A23MVY2LT4_1.fastp.html")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6f/b63ad8f917a3bde39f36e486a0ad0b/659_bNS-T1-TRNA-1_A23MVY2LT4_1.log 268/659_bNS-T1-TRNA-1_A23MVY2LT4_1.log")
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    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e2/da8f98e35d12ac147944a271ef8f0c/659_epP-T1-TRNA-1_A23MVY2LT4_1_combined_fusions_arriba_visualisation.pdf 2394/659_epP-T1-TRNA-1_A23MVY2LT4_1_combined_fusions_arriba_visualisation.pdf")
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    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c9/c49b0e621171a97f1f96b9f26176cd/659_bNS-T1-TRNA-1_A23MVY2LT4_2_trimmed_2_fastqc.zip 766/659_bNS-T1-TRNA-1_A23MVY2LT4_2_trimmed_2_fastqc.zip")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a9/402c5c0a479b432f22a88e0f652582/659_cIX-T1-TRNA-1_A23MVY2LT4_2.fastp.json 147/659_cIX-T1-TRNA-1_A23MVY2LT4_2.fastp.json")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e5/9281875fbe7f5f12e18f71ec6785d2/659_ecd-T1-TRNA-1_A23MVY2LT4_2.md.bam.metrics 1844/659_ecd-T1-TRNA-1_A23MVY2LT4_2.md.bam.metrics")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2b/60f9e4975d19c799da34172a948e7b/659_dcz-T1-TRNA-1_A23MVY2LT4_1_trimmed_2_fastqc.zip 586/659_dcz-T1-TRNA-1_A23MVY2LT4_1_trimmed_2_fastqc.zip")
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    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/70/a9d82989f8ea88a89e79451b8b1d1c/659_d01-T1-TRNA-1_A23MVY2LT4_1.inner_distance_freq.txt 1104/659_d01-T1-TRNA-1_A23MVY2LT4_1.inner_distance_freq.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/01/2630d9d2bd4a46b2ce34f5a9e25fe4/659_bGc-T1-TRNA-1_A23MVY2LT4_1_trimmed_2_fastqc.zip 702/659_bGc-T1-TRNA-1_A23MVY2LT4_1_trimmed_2_fastqc.zip")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3a/2fc821eeb22b23fc0c27c8290c7385/659_dc8-T1-TRNA-1_A23MVY2LT4_2_trimmed_1_fastqc.zip 721/659_dc8-T1-TRNA-1_A23MVY2LT4_2_trimmed_1_fastqc.zip")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/16/b3788ed0f65febde2f86e6740117ac/659_eHw-T1-TRNA-1_A23MVY2LT4_2_trimmed_2_fastqc.zip 694/659_eHw-T1-TRNA-1_A23MVY2LT4_2_trimmed_2_fastqc.zip")
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    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/20/1aeca1055b4304828f0311f210de71/659_ciZ-T1-TRNA-1_A23MVY2LT4_2_combined_fusions_arriba_visualisation.pdf 2339/659_ciZ-T1-TRNA-1_A23MVY2LT4_2_combined_fusions_arriba_visualisation.pdf")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/73/c45623e8a93965f664e6434c5e58d2/659_6i-T1-TRNA-1_A23MVY2LT4_2.lc_extrap.txt 2125/659_6i-T1-TRNA-1_A23MVY2LT4_2.lc_extrap.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/de/54920720fdf93d81561b71ac7d77fe/PX_FFPE_pan_TRNA_nat_01_A23MVY2LT4_1.infer_experiment.txt 992/PX_FFPE_pan_TRNA_nat_01_A23MVY2LT4_1.infer_experiment.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a5/60eb89409c23fb2a98e968a192c6b9/659_cWx-T1-TRNA-1_A23MVY2LT4_2.lc_extrap.txt 2167/659_cWx-T1-TRNA-1_A23MVY2LT4_2.lc_extrap.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d8/bf131722553ac59b0d56beed5201fe/659_ciZ-T1-TRNA-1_A23MVY2LT4_2.infer_experiment.txt 1002/659_ciZ-T1-TRNA-1_A23MVY2LT4_2.infer_experiment.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d6/0730ac2fa3ee1203b61e1540875c72/FFPE_V4_0002_RNA_0006_A23MVY2LT4_1.Log.final.out 829/FFPE_V4_0002_RNA_0006_A23MVY2LT4_1.Log.final.out")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/01/abfbefebb896799a5a678a07d0dacb/659_bNS-T1-TRNA-1_A23MVY2LT4_1.md.bam.metrics 1892/659_bNS-T1-TRNA-1_A23MVY2LT4_1.md.bam.metrics")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a2/a34a6b8a2517bd8915228c129add05/659_cVw-T1-TRNA-1_A23MVY2LT4_1_1_fastqc.zip 495/659_cVw-T1-TRNA-1_A23MVY2LT4_1_1_fastqc.zip")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2a/dfe2e22d01a72183d647fb8876565c/PX_FFPE_pan_TRNA_nat_03_A23MVY2LT4_1.log 244/PX_FFPE_pan_TRNA_nat_03_A23MVY2LT4_1.log")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c7/217bbd64a2ff04b6bf5f55ef993392/659_ciZ-T1-TRNA-1_A23MVY2LT4_2_contamination_mqc.tsv 1579/659_ciZ-T1-TRNA-1_A23MVY2LT4_2_contamination_mqc.tsv")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/32/4703a1c0d124327e8d387f70bdbe73/659_cAd-T1-TRNA-1_A23MVY2LT4_1.Log.final.out 803/659_cAd-T1-TRNA-1_A23MVY2LT4_1.Log.final.out")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/20/00deeac07360f92c28d97b0c01f940/659_ecd-T1-TRNA-1_A23MVY2LT4_1.read_distribution.txt 1465/659_ecd-T1-TRNA-1_A23MVY2LT4_1.read_distribution.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f0/b8206cc800a25d02ba97d289a5554d/659_bhK-T1-TRNA-1_A23MVY2LT4_1_2_fastqc.zip 508/659_bhK-T1-TRNA-1_A23MVY2LT4_1_2_fastqc.zip")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2d/68e9d167758fbaedffe9172948e6dc/PX_FFPE_stm_TRNA_nat_03_A23MVY2LT4_1.fastp.json 177/PX_FFPE_stm_TRNA_nat_03_A23MVY2LT4_1.fastp.json")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/58/f673d371b8f640f522c1d3751406bf/659_dm4-T1-TRNA-1_A23MVY2LT4_2.lc_extrap.txt 2121/659_dm4-T1-TRNA-1_A23MVY2LT4_2.lc_extrap.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a0/1f3d50807250db7967b7a82bfecd38/PX_FFPE_pan_TRNA_nat_03_A23MVY2LT4_1.junction_annotation.log 1183/PX_FFPE_pan_TRNA_nat_03_A23MVY2LT4_1.junction_annotation.log")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2f/91ab80728a31068908d58d7467e3b4/659_ciZ-T1-TRNA-1_A23MVY2LT4_2.pos.DupRate.xls 1675/659_ciZ-T1-TRNA-1_A23MVY2LT4_2.pos.DupRate.xls")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/96/469f7eb3128a927eb1956ef60370e9/659_bua-T1-TRNA-1_A23MVY2LT4_2.infer_experiment.txt 1053/659_bua-T1-TRNA-1_A23MVY2LT4_2.infer_experiment.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/eb/881b67a8e4e0747cabd63bf7a0e059/659_buD-T1-TRNA-1_A23MVY2LT4_1.inner_distance_freq.txt 1094/659_buD-T1-TRNA-1_A23MVY2LT4_1.inner_distance_freq.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/21/78084d7c92299e23f914d8b886611d/659_bGc-T1-TRNA-1_A23MVY2LT4_2.log 230/659_bGc-T1-TRNA-1_A23MVY2LT4_2.log")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ab/ff145369705a999b233bcee459e23e/659_buD-T1-TRNA-1_A23MVY2LT4_1_kallisto_mqc.tsv 362/659_buD-T1-TRNA-1_A23MVY2LT4_1_kallisto_mqc.tsv")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/72/b3e6ee7d0e3c89ca7446d8040e1980/659_Lx-T1-TRNA-1_A23MVY2LT4_2.read_distribution.txt 1497/659_Lx-T1-TRNA-1_A23MVY2LT4_2.read_distribution.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bb/789dfd909466a34c1db0635f45dbaa/659_Lx-T1-TRNA-1_A23MVY2LT4_1_contamination_mqc.tsv 1550/659_Lx-T1-TRNA-1_A23MVY2LT4_1_contamination_mqc.tsv")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/51/ab24eebf9d28bc7f5d5563477a5aca/659_bQZ-T1-TRNA-1_A23MVY2LT4_2.log 286/659_bQZ-T1-TRNA-1_A23MVY2LT4_2.log")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/80/15da73317e569975937be0e48e34bd/659_cIX-T1-TRNA-1_A23MVY2LT4_1_combined_fusions_arriba_visualisation.pdf 2343/659_cIX-T1-TRNA-1_A23MVY2LT4_1_combined_fusions_arriba_visualisation.pdf")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d8/5a3e2fe2738083566ea83198e001a4/FFPE_HD789_01_RNA_13_A23MVY2LT4_1_1_fastqc.zip 451/FFPE_HD789_01_RNA_13_A23MVY2LT4_1_1_fastqc.zip")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fb/85aeab674989cb8225725937ee4149/659_dc8-T1-TRNA-1_A23MVY2LT4_2_contamination_mqc.tsv 1585/659_dc8-T1-TRNA-1_A23MVY2LT4_2_contamination_mqc.tsv")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/75/91f0a34d2ba1b03fab156b99e056c2/659_ecd-T1-TRNA-1_A23MVY2LT4_1.Log.final.out 804/659_ecd-T1-TRNA-1_A23MVY2LT4_1.Log.final.out")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ef/68760a8224d2801d3a953c83ecc6d9/659_dc8-T1-TRNA-1_A23MVY2LT4_2.Log.final.out 822/659_dc8-T1-TRNA-1_A23MVY2LT4_2.Log.final.out")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/78/1abdd1d035c7d348332a7bc41c8e88/659_bGW-T1-TRNA-1_A23MVY2LT4_1_trimmed_2_fastqc.zip 704/659_bGW-T1-TRNA-1_A23MVY2LT4_1_trimmed_2_fastqc.zip")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e3/0f8ff0602edb3c349b30f976b55727/659_bQZ-T1-TRNA-1_A23MVY2LT4_1.pos.DupRate.xls 1683/659_bQZ-T1-TRNA-1_A23MVY2LT4_1.pos.DupRate.xls")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/65/193a6e902b9198662a077164074fcf/659_buD-T1-TRNA-1_A23MVY2LT4_1.fastp.json 193/659_buD-T1-TRNA-1_A23MVY2LT4_1.fastp.json")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/92/09d56a9c0d65aa25153151c792e279/659_Dl-T1-TRNA-1_A23MVY2LT4_2_combined_fusions_arriba_visualisation.pdf 2312/659_Dl-T1-TRNA-1_A23MVY2LT4_2_combined_fusions_arriba_visualisation.pdf")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d7/a215a52654cec40c0e000d61ad2c83/659_bQZ-T1-TRNA-1_A23MVY2LT4_1.ReadsPerGene.out.tab 916/659_bQZ-T1-TRNA-1_A23MVY2LT4_1.ReadsPerGene.out.tab")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/64/6195eb62733b9a5e376625b4d05a94/659_rd-T1-TRNA-1_A23MVY2LT4_1.inner_distance_freq.txt 1076/659_rd-T1-TRNA-1_A23MVY2LT4_1.inner_distance_freq.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/44/61587b5576feefd3132c996d48dbb2/659_gK-T1-TRNA-1_A23MVY2LT4_2.fastp.html 40/659_gK-T1-TRNA-1_A23MVY2LT4_2.fastp.html")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/be/d77f559b23c8c71a930f9db4b79a22/PX_FFPE_pst_TRNA_nat_02_A23MVY2LT4_1.infer_experiment.txt 981/PX_FFPE_pst_TRNA_nat_02_A23MVY2LT4_1.infer_experiment.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cf/1df1a90ffc6e7a906def44592ff5fa/659_Lx-T1-TRNA-1_A23MVY2LT4_1_rseqc_extra_mqc.tsv 1361/659_Lx-T1-TRNA-1_A23MVY2LT4_1_rseqc_extra_mqc.tsv")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0e/22b09b42c5b0ec22d56600874b015e/PX_FFPE_pan_TRNA_nat_03_A23MVY2LT4_1_kallisto_mqc.tsv 340/PX_FFPE_pan_TRNA_nat_03_A23MVY2LT4_1_kallisto_mqc.tsv")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c4/c58713d604c1e5118bb46aaa29a559/659_gK-T1-TRNA-1_A23MVY2LT4_1.infer_experiment.txt 1031/659_gK-T1-TRNA-1_A23MVY2LT4_1.infer_experiment.txt")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a3/fd6484376dc3f961c236fd195b4ef2/659_rd-T1-TRNA-1_A23MVY2LT4_2.fastp.json 191/659_rd-T1-TRNA-1_A23MVY2LT4_2.fastp.json")
    downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/73/9e085e30981e7b188da5e96b308b62/659_cWx-T1-TRNA-1_A23MVY2LT4_1_seqtool_mqc.tsv 1976/659_cWx-T1-TRNA-1_A23MVY2LT4_1_seqtool_mqc.tsv")
    nxf_parallel "${downloads[@]}"
    echo "==> STAGING COMPLETE (2402 inputs)"
    echo ""
}

nxf_unstage_outputs() {
    true
    uploads=()
    IFS=$'\n'
    for name in $(eval "ls -1d *multiqc_report.html *_data *_plots versions.yml" | sort | uniq); do
        uploads+=("nxf_s3_upload '$name' s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fc/80db6e12666adc41488218e4a89c45")
    done
    unset IFS
    nxf_parallel "${uploads[@]}"
}

nxf_unstage_controls() {
    true
    nxf_s3_upload .command.out s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fc/80db6e12666adc41488218e4a89c45 || true
    nxf_s3_upload .command.err s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fc/80db6e12666adc41488218e4a89c45 || true
    nxf_s3_upload .command.trace s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fc/80db6e12666adc41488218e4a89c45 || true
}

nxf_unstage() {
    if [[ ${nxf_main_ret:=0} == 0 ]]; then
        (set -e -o pipefail; (nxf_unstage_outputs | tee -a .command.out) 3>&1 1>&2 2>&3 | tee -a .command.err)
        nxf_unstage_ret=$?
    fi
    nxf_unstage_controls
}

nxf_main() {
    trap on_exit EXIT
    trap on_term TERM INT USR2
    trap '' USR1

    [[ "${NXF_CHDIR:-}" ]] && cd "$NXF_CHDIR"
    NXF_SCRATCH="$(set +u; nxf_mktemp /tmp)"
    [[ $NXF_DEBUG > 0 ]] && nxf_env
    echo start | nxf_s3_upload - s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fc/80db6e12666adc41488218e4a89c45/.command.begin
    set +u
    set -u
    /opt/s5cmd/bin/s5cmd --log error cp "s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/tmp/6b/04437c1618356118d24f8678814276/bin/*" $NXF_SCRATCH/nextflow-bin/
    chmod +x $NXF_SCRATCH/nextflow-bin/* || true
    export PATH=$NXF_SCRATCH/nextflow-bin:$PATH
    export PYTHONNOUSERSITE="1"
    export R_PROFILE_USER="/.Rprofile"
    export R_ENVIRON_USER="/.Renviron"
    export JULIA_DEPOT_PATH="/usr/local/share/julia"
    [[ $NXF_SCRATCH ]] && cd $NXF_SCRATCH
    export NXF_TASK_WORKDIR="$PWD"
    nxf_stage

    set +e
    (set -o pipefail; (nxf_launch | tee .command.out) 3>&1 1>&2 2>&3 | tee .command.err) &
    pid=$!
    wait $pid || nxf_main_ret=$?
    nxf_unstage
}

$NXF_ENTRY