Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/dc/93e1d78d91dd72d081e1b81979e7c5/659_cIX-T1-TRNA-1_A23MVY2LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ec/bbcbdbcb1668a275068e082a9871d0/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ec/bbcbdbcb1668a275068e082a9871d0/.command.run
==> STAGING COMPLETE (3 inputs)

PAIRED_END_BAM_INPUT
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paired = 289248003
unpaired = 5811322
MERGED PAIRED END READS = 289248003
MATES PROCESSED = 584307328
TOTAL READS     = 295059325
DISTINCT READS  = 1.37653e+08
DISTINCT COUNTS = 862
MAX COUNT       = 1339484
COUNTS OF 1     = 7.38518e+07
MAX TERMS       = 100
OBSERVED COUNTS (1339485)
1	73851837
2	32158520
3	14724466
4	7060627
5	3609563
6	1990193
7	1179767
8	746514
9	496768
10	350655
11	255366
12	192722
13	149338
14	119061
15	95487
16	77877
17	65460
18	54571
19	46765
20	40080
21	34484
22	30034
23	26271
24	23434
25	20462
26	18534
27	16558
28	14807
29	13384
30	12054
31	10964
32	9914
33	9254
34	8312
35	7772
36	6994
37	6513
38	6117
39	5596
40	5288
41	4858
42	4404
43	4241
44	3905
45	3611
46	3429
47	3119
48	3034
49	2846
50	2642
51	2533
52	2407
53	2197
54	2159
55	2106
56	1892
57	1748
58	1631
59	1585
60	1549
61	1466
62	1423
63	1334
64	1278
65	1187
66	1213
67	1082
68	1085
69	993
70	992
71	932
72	898
73	879
74	806
75	773
76	766
77	715
78	682
79	645
80	656
81	635
82	611
83	571
84	556
85	603
86	523
87	492
88	497
89	510
90	474
91	415
92	433
93	445
94	354
95	352
96	391
97	360
98	352
99	328
100	305
101	320
102	317
103	325
104	291
105	287
106	273
107	255
108	308
109	255
110	231
111	215
112	246
113	202
114	226
115	233
116	180
117	196
118	183
119	199
120	179
121	179
122	157
123	146
124	190
125	159
126	162
127	162
128	151
129	144
130	147
131	143
132	150
133	146
134	130
135	122
136	127
137	143
138	144
139	116
140	138
141	128
142	91
143	108
144	102
145	110
146	95
147	106
148	90
149	94
150	96
151	94
152	87
153	93
154	84
155	84
156	86
157	84
158	104
159	86
160	71
161	64
162	95
163	72
164	64
165	61
166	71
167	59
168	65
169	68
170	46
171	73
172	67
173	59
174	70
175	63
176	71
177	51
178	40
179	44
180	57
181	53
182	60
183	39
184	63
185	48
186	39
187	37
188	55
189	53
190	41
191	54
192	46
193	37
194	48
195	27
196	41
197	39
198	30
199	33
200	30
201	44
202	41
203	34
204	39
205	34
206	33
207	37
208	29
209	33
210	35
211	37
212	38
213	30
214	37
215	33
216	28
217	43
218	33
219	22
220	30
221	25
222	35
223	31
224	29
225	18
226	30
227	30
228	22
229	32
230	27
231	25
232	30
233	25
234	30
235	22
236	19
237	20
238	24
239	20
240	28
241	23
242	31
243	14
244	18
245	23
246	19
247	25
248	12
249	23
250	18
251	20
252	19
253	19
254	13
255	10
256	20
257	19
258	21
259	18
260	19
261	16
262	13
263	21
264	10
265	21
266	16
267	15
268	19
269	12
270	26
271	16
272	15
273	16
274	16
275	13
276	7
277	12
278	9
279	8
280	15
281	11
282	20
283	10
284	11
285	11
286	9
287	10
288	7
289	10
290	13
291	13
292	12
293	8
294	13
295	9
296	9
297	13
298	10
299	9
300	7
301	12
302	8
303	10
304	10
305	13
306	9
307	13
308	11
309	9
310	13
311	10
312	10
313	9
314	3
315	6
316	7
317	6
318	9
319	10
320	8
321	16
322	6
323	4
324	7
325	6
326	8
327	5
328	10
329	10
330	8
331	12
332	7
333	5
334	7
335	11
336	9
337	8
338	7
339	7
340	6
341	8
342	7
343	15
344	5
345	6
346	10
347	3
348	6
349	5
350	7
351	8
352	4
353	4
354	8
355	7
356	9
357	7
358	4
359	6
360	5
361	11
362	13
363	1
364	4
365	9
366	5
367	8
368	4
369	8
370	7
371	5
372	4
373	5
374	8
375	7
376	3
377	6
378	6
379	3
380	1
381	3
382	9
383	5
384	5
385	3
386	5
387	4
388	7
389	1
390	2
391	4
392	7
393	4
394	4
395	6
396	8
397	5
398	2
399	2
400	4
401	7
402	3
403	2
404	6
405	1
406	3
407	2
408	4
409	4
410	4
411	1
412	8
413	2
414	5
415	3
416	4
417	3
418	7
419	4
420	6
421	2
422	5
423	2
424	7
425	1
426	3
427	1
428	1
429	3
430	4
431	1
432	5
433	2
434	5
436	4
437	4
439	1
440	6
441	5
442	4
443	4
444	2
445	1
446	6
447	1
448	5
449	1
450	2
451	3
452	1
453	3
454	2
455	1
456	5
457	6
458	1
460	6
461	2
462	1
463	1
464	3
465	5
466	3
467	1
468	2
469	2
470	3
471	1
473	3
474	5
475	1
476	1
477	3
478	3
479	5
480	1
481	5
482	1
483	3
484	4
485	1
486	3
487	1
488	1
489	2
490	4
491	4
492	2
493	1
494	1
495	4
496	2
497	3
498	3
499	1
500	2
502	1
503	1
505	2
506	1
507	2
508	2
509	2
510	3
511	2
513	1
514	1
515	1
516	3
517	1
518	2
519	4
520	1
522	1
523	1
524	2
525	1
526	1
527	1
528	1
529	1
531	4
532	1
533	2
535	2
537	1
538	3
539	2
540	2
541	4
543	1
544	2
545	1
546	1
547	3
548	1
549	1
550	2
551	1
552	3
553	1
555	1
556	1
557	1
558	3
559	2
560	2
561	1
562	2
563	1
564	1
565	1
566	1
567	1
568	1
569	3
570	2
571	2
572	2
573	1
574	1
575	1
576	1
577	1
580	2
582	1
583	3
585	2
586	1
587	2
588	1
591	1
592	2
593	1
594	1
595	4
596	2
597	1
598	3
601	1
602	1
605	1
606	1
607	1
608	2
611	1
612	2
613	1
614	2
615	2
619	2
620	1
622	1
623	1
625	2
626	1
628	1
630	2
632	3
633	1
634	1
635	2
636	1
637	1
639	3
641	2
643	2
646	2
648	1
650	2
651	1
652	1
653	1
654	1
655	4
656	1
657	1
658	1
659	1
660	1
662	1
664	2
668	2
670	2
674	1
675	4
676	1
678	1
680	2
683	2
685	2
693	1
696	1
697	1
698	2
704	2
708	2
710	1
714	1
715	1
717	1
720	1
721	1
723	1
724	1
725	1
731	1
732	1
733	1
736	2
739	1
741	1
743	1
746	1
750	1
753	1
755	1
758	1
759	1
760	1
763	2
764	1
765	1
766	3
768	1
769	1
771	1
774	1
776	2
777	2
779	1
780	1
783	1
787	1
788	2
793	1
796	1
805	2
809	1
812	1
813	1
814	1
816	1
819	1
824	1
827	1
829	1
830	2
832	2
833	1
837	1
850	1
852	1
855	1
857	1
864	2
867	2
870	1
875	1
880	2
888	1
889	1
892	1
903	1
905	1
910	1
911	1
915	1
917	1
925	2
931	1
937	1
944	1
949	1
956	1
962	1
963	1
965	1
967	1
968	1
972	1
973	1
983	1
988	1
991	1
993	1
996	1
1010	1
1013	1
1014	1
1020	1
1023	1
1033	1
1055	1
1058	2
1060	1
1071	1
1092	1
1116	1
1134	1
1139	1
1159	1
1161	1
1184	1
1185	1
1202	1
1219	1
1263	1
1265	1
1270	1
1281	1
1283	1
1305	1
1315	1
1324	1
1326	1
1328	1
1359	1
1376	1
1378	1
1399	1
1416	1
1422	1
1425	1
1428	1
1450	1
1488	1
1492	1
1497	1
1500	1
1501	1
1508	1
1510	1
1520	1
1524	1
1527	1
1538	1
1543	1
1544	1
1580	1
1590	1
1601	1
1605	1
1621	1
1639	1
1654	1
1670	1
1682	1
1694	1
1707	1
1720	1
1727	1
1765	1
1776	1
1780	1
1791	1
1810	1
1818	1
1822	1
1858	1
1880	1
1887	1
1918	1
1924	1
1926	1
1930	1
1935	1
1941	1
1953	1
1962	1
1968	1
1983	1
2008	1
2015	1
2021	1
2058	1
2075	1
2088	1
2100	1
2123	1
2136	1
2143	1
2148	1
2172	2
2186	1
2206	1
2228	1
2232	1
2233	1
2256	1
2262	1
2263	1
2308	1
2344	1
2346	1
2398	1
2492	1
2552	1
2580	1
2590	1
2596	1
2681	1
2738	1
2836	1
2845	1
2857	1
2937	1
2967	1
2971	1
2977	1
3220	1
3398	1
3697	1
3966	1
4499	1
4749	1
6305	1
8177	1
12673	1
15111	1
54802	1
1339484	1

[ESTIMATING YIELD CURVE]
[BOOTSTRAPPING HISTOGRAM]
........._..................................................._..........
..............................
[COMPUTING CONFIDENCE INTERVALS]
[WRITING OUTPUT]