.command.log - Workdir - NFCORE_RNAFUSION:RNAFUSION:SAMTOOLS_INDEX_ALIGNMENT_CRAM (659_eHw-T1-TRNA-1_A23MVY2LT4_2)

File Info

Filename: .command.log
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c6/b52bcdedf33969f863ee25455b2faf/.command.log
Size: 506 bytes
Task: NFCORE_RNAFUSION:RNAFUSION:SAMTOOLS_INDEX_ALIGNMENT_CRAM (659_eHw-T1-TRNA-1_A23MVY2LT4_2)
Attempt

Content

  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c6/b52bcdedf33969f863ee25455b2faf/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f7/a1f7a1e707e946dcfa7d64a8bf6e53/659_eHw-T1-TRNA-1_A23MVY2LT4_2.star_alignment.Aligned.sortedByCoord.out.cram
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c6/b52bcdedf33969f863ee25455b2faf/.command.run
==> STAGING COMPLETE (3 inputs)

ls: *.bai: No such file or directory
ls: *.csi: No such file or directory