AIH curated blacklist: matched 13 fusion rows (breakpoint_ID in qualified set)
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ARRIBA FILTERING SUMMARY
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Total fusions: 417
Pass (FILTER=PASS): 61 (14.6%)
Fail (FILTER=FAIL): 356 (85.4%)
AIH curated blacklist (blacklisted flag):
Total blacklisted: 13
All 13 blacklisted rows have FILTER=FAIL
Failure reasons (top 15):
confidence_below_min(low<high);total_reads_below_min(1.0<8.0): 75
confidence_below_min(medium<high): 65
confidence_below_min(medium<high);total_reads_below_min(3.0<8.0): 23
confidence_below_min(medium<high);total_reads_below_min(7.0<8.0): 22
confidence_below_min(medium<high);total_reads_below_min(4.0<8.0): 22
confidence_below_min(low<high);total_reads_below_min(2.0<8.0): 21
confidence_below_min(low<high): 19
confidence_below_min(medium<high);total_reads_below_min(6.0<8.0): 18
confidence_below_min(low<high);total_reads_below_min(3.0<8.0): 15
confidence_below_min(low<high);total_reads_below_min(4.0<8.0): 13
confidence_below_min(low<high);total_reads_below_min(0.0<8.0): 12
confidence_below_min(medium<high);total_reads_below_min(2.0<8.0): 10
confidence_below_min(low<high);total_reads_below_min(5.0<8.0): 8
confidence_below_min(low<high);total_reads_below_min(6.0<8.0): 5
confidence_below_min(medium<high);aih_curated_blacklist: 5
Breakdown by confidence:
high: 61 pass, 12 fail (total: 73)
low: 0 pass, 174 fail (total: 174)
medium: 0 pass, 170 fail (total: 170)
Arriba filter: 417 rows -> 61 PASS; wrote FFPE_HD789_01_RNA_13_A23MVY2LT4_1.arriba.fusions.filtered.tsv and FFPE_HD789_01_RNA_13_A23MVY2LT4_1.arriba.fusions.filtered_pass_only.tsv
Summary written to: FFPE_HD789_01_RNA_13_A23MVY2LT4_1.arriba.fusions.filter_summary.txt