Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6d/8e08278fddac3a2055420fc8f4651c/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3b/35589e7482d5b3ea6e6590c5db3051/659_bua-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6d/8e08278fddac3a2055420fc8f4651c/.command.run
==> STAGING COMPLETE (3 inputs)

PAIRED_END_BAM_INPUT
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Processed 590000000 records
paired = 292061800
unpaired = 5971748
MERGED PAIRED END READS = 292061800
MATES PROCESSED = 590095348
TOTAL READS     = 298033548
DISTINCT READS  = 9.3873e+07
DISTINCT COUNTS = 1419
MAX COUNT       = 1407541
COUNTS OF 1     = 3.42295e+07
MAX TERMS       = 100
OBSERVED COUNTS (1407542)
1	34229471
2	21151149
3	13621867
4	8565441
5	5324951
6	3331896
7	2123341
8	1388387
9	937025
10	651919
11	469784
12	347061
13	262375
14	202971
15	160509
16	128577
17	105269
18	87354
19	73117
20	62229
21	53363
22	45982
23	40803
24	35467
25	31547
26	28429
27	25141
28	23073
29	20730
30	18936
31	16777
32	15446
33	14542
34	13303
35	12329
36	11230
37	10483
38	9859
39	9167
40	8518
41	8022
42	7360
43	7032
44	6630
45	6179
46	6020
47	5580
48	5226
49	4954
50	4845
51	4347
52	4129
53	4028
54	3899
55	3551
56	3524
57	3314
58	3184
59	3002
60	2908
61	2813
62	2695
63	2532
64	2487
65	2342
66	2295
67	2178
68	2164
69	2032
70	1960
71	1925
72	1922
73	1748
74	1696
75	1638
76	1523
77	1543
78	1470
79	1429
80	1345
81	1294
82	1314
83	1239
84	1181
85	1159
86	1099
87	1142
88	1109
89	1048
90	1016
91	994
92	953
93	953
94	961
95	855
96	862
97	799
98	826
99	797
100	781
101	783
102	702
103	733
104	713
105	736
106	679
107	645
108	631
109	594
110	577
111	656
112	555
113	554
114	581
115	527
116	529
117	510
118	527
119	468
120	447
121	444
122	423
123	455
124	435
125	419
126	411
127	412
128	389
129	417
130	370
131	367
132	358
133	350
134	371
135	367
136	350
137	347
138	320
139	344
140	301
141	309
142	307
143	300
144	266
145	283
146	300
147	301
148	285
149	279
150	253
151	293
152	237
153	249
154	241
155	249
156	244
157	233
158	229
159	230
160	235
161	216
162	242
163	244
164	213
165	212
166	207
167	170
168	184
169	178
170	198
171	184
172	188
173	182
174	186
175	156
176	173
177	169
178	177
179	157
180	147
181	160
182	175
183	158
184	135
185	153
186	151
187	128
188	164
189	149
190	153
191	131
192	145
193	153
194	134
195	138
196	111
197	117
198	118
199	115
200	137
201	124
202	119
203	119
204	107
205	141
206	115
207	99
208	122
209	99
210	104
211	94
212	121
213	81
214	93
215	102
216	108
217	108
218	102
219	83
220	92
221	82
222	83
223	97
224	86
225	73
226	104
227	76
228	76
229	97
230	85
231	88
232	84
233	79
234	86
235	76
236	80
237	71
238	79
239	67
240	77
241	90
242	64
243	58
244	71
245	73
246	72
247	71
248	62
249	81
250	60
251	64
252	54
253	67
254	57
255	74
256	68
257	74
258	54
259	62
260	61
261	54
262	61
263	49
264	55
265	47
266	50
267	51
268	53
269	57
270	55
271	44
272	68
273	61
274	42
275	55
276	66
277	56
278	48
279	40
280	38
281	49
282	57
283	46
284	43
285	68
286	46
287	44
288	48
289	36
290	49
291	56
292	40
293	57
294	54
295	35
296	35
297	30
298	50
299	40
300	36
301	48
302	34
303	57
304	41
305	45
306	28
307	38
308	33
309	41
310	37
311	38
312	52
313	36
314	36
315	34
316	36
317	40
318	33
319	38
320	42
321	35
322	20
323	34
324	28
325	35
326	39
327	35
328	26
329	28
330	22
331	31
332	23
333	28
334	24
335	37
336	26
337	45
338	20
339	32
340	21
341	33
342	23
343	33
344	18
345	23
346	31
347	30
348	23
349	23
350	30
351	23
352	34
353	32
354	24
355	23
356	24
357	28
358	28
359	33
360	26
361	23
362	21
363	25
364	27
365	23
366	25
367	21
368	28
369	20
370	26
371	24
372	23
373	27
374	20
375	20
376	19
377	20
378	20
379	17
380	11
381	23
382	18
383	15
384	22
385	21
386	18
387	22
388	25
389	21
390	26
391	16
392	17
393	17
394	18
395	14
396	21
397	14
398	14
399	23
400	13
401	18
402	14
403	22
404	17
405	24
406	16
407	16
408	13
409	12
410	15
411	17
412	21
413	17
414	15
415	22
416	18
417	21
418	22
419	18
420	15
421	12
422	19
423	14
424	15
425	19
426	18
427	9
428	11
429	15
430	17
431	13
432	23
433	13
434	18
435	9
436	13
437	11
438	11
439	8
440	17
441	12
442	13
443	11
444	12
445	12
446	12
447	14
448	17
449	8
450	25
451	11
452	17
453	15
454	13
455	19
456	11
457	11
458	12
459	11
460	12
461	17
462	10
463	14
464	13
465	15
466	5
467	7
468	9
469	11
470	11
471	5
472	13
473	12
474	8
475	8
476	8
477	10
478	14
479	8
480	13
481	8
482	12
483	10
484	19
485	10
486	9
487	7
488	9
489	13
490	7
491	10
492	8
493	9
494	11
495	17
496	8
497	9
498	13
499	8
500	9
501	9
502	10
503	7
504	9
505	10
506	6
507	9
508	11
509	12
510	14
511	10
512	9
513	12
514	13
515	15
516	11
517	10
518	12
519	15
520	7
521	8
522	8
523	7
524	10
525	9
526	9
527	8
528	12
529	6
530	6
531	6
532	11
533	9
534	9
535	14
536	10
537	6
538	8
539	9
540	9
541	7
542	4
543	6
544	4
545	5
546	11
547	15
548	8
549	7
550	6
551	9
552	7
553	8
554	7
555	4
556	7
557	8
558	9
559	11
560	9
561	8
562	7
563	5
564	6
565	6
566	4
567	8
568	4
569	9
570	6
571	9
572	13
573	8
574	10
575	7
576	4
577	2
578	11
579	6
580	6
581	6
582	4
583	3
584	7
585	8
586	8
587	6
588	6
589	1
590	8
591	5
592	4
593	4
594	3
595	8
596	6
597	8
598	4
599	4
600	4
601	4
602	7
603	2
604	4
605	5
606	2
607	6
608	1
609	3
610	11
611	11
612	8
613	5
614	1
615	6
616	5
617	1
618	6
619	5
620	10
621	4
622	2
623	1
624	2
625	6
626	3
627	1
628	5
629	6
630	10
631	4
632	10
633	2
634	9
635	8
636	4
637	4
638	8
639	2
640	4
641	3
642	6
643	2
644	5
646	5
647	4
648	8
649	6
650	9
651	4
652	4
653	5
654	3
655	3
656	4
657	4
659	3
660	2
661	5
662	4
663	7
664	4
665	3
666	1
667	7
668	2
669	5
670	2
671	5
672	4
673	4
674	7
675	4
676	5
677	8
678	5
679	2
681	3
682	4
683	5
684	7
686	5
687	6
688	7
689	4
690	2
691	7
692	2
693	2
694	6
695	4
696	5
697	4
698	1
699	2
700	4
701	2
702	8
703	2
704	3
705	5
706	4
707	7
708	5
709	1
710	3
711	4
712	5
713	2
714	2
715	2
716	6
717	2
718	4
719	2
720	1
721	2
722	3
723	1
724	7
725	4
726	3
727	2
728	3
729	2
730	2
731	3
732	2
733	6
734	2
735	2
736	5
737	1
738	5
739	4
740	5
741	2
742	4
743	6
744	4
745	4
746	4
747	2
748	1
749	5
750	1
751	1
752	2
753	2
754	5
755	6
756	1
757	4
758	5
759	1
760	2
761	1
762	2
763	1
764	1
765	2
767	2
768	3
769	4
770	2
771	3
772	5
773	3
774	1
775	2
776	2
777	3
778	3
779	3
780	3
781	5
782	3
783	4
784	3
785	1
786	1
787	1
788	5
790	2
791	2
793	3
794	3
795	1
796	4
797	4
798	1
799	3
801	2
802	1
803	2
804	1
805	2
806	4
807	4
808	1
809	3
810	3
811	1
812	1
813	3
814	1
815	3
816	1
817	3
819	3
820	2
821	1
822	1
823	5
824	1
825	2
826	2
827	4
828	2
829	2
830	1
831	6
832	3
833	1
834	3
835	3
836	3
837	2
838	3
839	1
840	6
841	1
842	2
843	1
844	2
845	1
846	3
847	5
848	2
849	3
850	1
851	1
852	1
853	1
854	1
855	2
856	5
857	1
858	3
859	1
860	2
861	2
862	3
864	2
865	2
866	2
867	5
868	1
869	3
870	1
872	1
873	1
875	2
876	2
877	4
878	3
879	4
880	1
881	3
882	1
883	2
886	3
889	2
890	2
891	1
892	2
893	3
894	2
896	1
897	3
898	1
899	1
901	3
902	2
903	1
904	2
906	1
908	2
909	1
910	2
912	1
913	1
915	3
916	2
917	1
918	2
919	1
920	3
922	2
924	4
925	1
926	1
927	2
928	1
929	2
931	1
932	1
933	3
934	2
935	2
936	2
937	1
939	1
940	1
941	2
943	1
944	2
945	2
946	2
947	1
948	1
950	4
951	1
952	3
954	2
955	1
956	2
958	1
959	2
961	1
962	1
963	2
965	2
966	4
970	3
971	1
972	1
973	1
975	1
977	2
978	1
979	1
980	3
983	1
984	1
985	1
986	2
987	1
989	2
991	4
992	1
993	1
994	1
995	2
996	2
997	3
998	1
1001	1
1002	2
1003	2
1005	1
1006	1
1007	1
1008	3
1009	1
1011	1
1012	1
1014	1
1015	1
1017	1
1019	1
1020	1
1021	4
1024	1
1025	1
1029	2
1030	1
1031	4
1034	3
1035	1
1036	2
1037	1
1039	2
1041	3
1042	1
1043	1
1045	1
1046	2
1047	1
1048	2
1050	1
1052	1
1053	1
1054	1
1055	1
1056	2
1057	1
1058	1
1060	2
1063	1
1064	1
1065	1
1066	3
1067	2
1068	1
1069	1
1070	1
1072	1
1075	2
1077	2
1079	2
1081	1
1083	1
1084	1
1085	1
1086	3
1088	1
1090	1
1091	2
1092	1
1093	2
1095	1
1100	1
1101	1
1105	1
1107	1
1109	3
1110	1
1111	4
1116	1
1121	1
1122	1
1124	1
1125	1
1127	1
1131	2
1132	3
1136	1
1137	1
1139	1
1141	1
1146	2
1147	1
1149	1
1150	1
1151	2
1154	1
1156	1
1157	1
1158	1
1163	3
1168	1
1170	1
1171	1
1172	1
1175	1
1177	1
1178	1
1179	1
1181	1
1182	2
1184	2
1185	1
1187	2
1190	1
1191	3
1192	2
1194	1
1195	2
1198	1
1199	1
1201	1
1202	1
1203	1
1206	1
1207	2
1208	1
1209	1
1210	1
1211	1
1215	2
1220	1
1222	3
1223	1
1224	1
1226	1
1227	4
1228	1
1235	1
1237	3
1239	1
1242	1
1244	3
1248	1
1249	1
1250	2
1258	2
1259	1
1261	1
1264	1
1265	1
1269	1
1272	2
1275	1
1277	1
1278	1
1279	1
1287	3
1292	2
1293	2
1294	1
1295	1
1300	1
1301	2
1302	1
1303	2
1304	1
1308	1
1309	1
1321	1
1323	2
1326	1
1327	2
1334	1
1335	1
1336	2
1339	1
1343	1
1344	2
1345	1
1348	2
1350	1
1351	1
1352	1
1354	1
1359	1
1365	1
1366	1
1367	1
1372	1
1374	1
1376	2
1377	1
1379	1
1383	2
1391	1
1396	1
1397	1
1402	2
1403	1
1410	1
1413	1
1420	1
1427	1
1430	1
1433	1
1436	1
1437	1
1445	1
1449	1
1450	1
1451	1
1457	1
1460	1
1467	1
1469	1
1475	2
1476	1
1477	1
1479	1
1481	1
1484	1
1487	1
1494	1
1501	1
1502	2
1505	1
1512	1
1514	2
1515	1
1523	1
1525	1
1527	1
1528	1
1529	2
1534	1
1536	1
1545	1
1548	3
1551	1
1555	1
1557	2
1562	2
1568	1
1569	2
1574	1
1582	3
1585	1
1594	1
1598	1
1599	1
1600	1
1604	1
1612	1
1614	1
1618	1
1620	1
1625	1
1631	1
1632	1
1633	2
1634	1
1637	1
1638	1
1642	2
1647	1
1649	1
1652	1
1653	1
1661	1
1662	1
1669	1
1676	1
1683	1
1692	1
1697	1
1702	1
1706	1
1716	1
1733	1
1748	1
1749	1
1753	2
1754	2
1755	1
1756	2
1757	1
1760	1
1761	1
1764	1
1771	2
1773	1
1777	1
1785	1
1797	1
1798	1
1799	1
1801	1
1802	1
1807	1
1809	1
1812	1
1814	1
1815	1
1821	1
1824	1
1825	1
1826	1
1833	1
1838	1
1844	2
1845	1
1855	1
1869	1
1871	1
1877	1
1885	1
1890	1
1899	1
1900	1
1903	1
1919	1
1920	1
1924	1
1949	3
1957	2
1960	1
1961	1
1968	1
1972	1
1982	1
1989	1
1993	1
1996	1
2000	1
2005	1
2007	2
2021	1
2026	1
2034	2
2047	1
2048	1
2051	1
2054	1
2058	2
2061	1
2071	1
2076	1
2077	1
2078	1
2090	1
2095	1
2101	1
2102	2
2116	1
2123	1
2131	1
2140	1
2141	1
2155	1
2159	1
2170	1
2185	1
2188	1
2204	1
2209	1
2229	1
2230	1
2234	1
2248	1
2265	1
2272	2
2282	1
2283	1
2290	1
2299	2
2313	1
2323	1
2335	1
2336	1
2341	1
2346	1
2351	1
2359	1
2364	1
2370	1
2372	1
2411	1
2416	1
2441	1
2443	1
2447	1
2456	1
2490	1
2509	1
2511	1
2524	1
2527	1
2542	1
2548	1
2582	1
2589	1
2592	1
2594	1
2598	1
2606	1
2655	1
2679	1
2703	1
2719	1
2737	1
2750	1
2761	1
2767	1
2775	1
2848	1
2861	1
2872	1
2889	1
2895	1
2918	1
2968	1
3093	1
3094	1
3110	1
3131	1
3191	1
3196	1
3232	1
3246	1
3260	1
3268	1
3299	1
3323	1
3339	1
3344	1
3371	1
3373	1
3414	1
3470	1
3577	1
3598	1
3756	1
3800	1
3829	1
4066	1
4102	1
4304	1
4497	1
4643	1
4657	1
5000	1
5057	1
5171	1
5177	1
5611	1
5681	1
5773	1
5846	1
6149	1
6196	1
6614	1
6716	1
8523	1
11094	1
17212	1
18589	1
68923	1
1407541	1

[ESTIMATING YIELD CURVE]
[BOOTSTRAPPING HISTOGRAM]
.._.....................................................................
.............................
[COMPUTING CONFIDENCE INTERVALS]
[WRITING OUTPUT]