Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2b/0c7cad2d417e61895abda76f57b0a5/659_bhK-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ce/295dca3b0137679aeb5bec39c20d79/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ce/295dca3b0137679aeb5bec39c20d79/.command.run
==> STAGING COMPLETE (3 inputs)

PAIRED_END_BAM_INPUT
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paired = 291730030
unpaired = 5777315
MERGED PAIRED END READS = 291730030
MATES PROCESSED = 589237375
TOTAL READS     = 297507345
DISTINCT READS  = 8.40899e+07
DISTINCT COUNTS = 2434
MAX COUNT       = 1447421
COUNTS OF 1     = 3.04775e+07
MAX TERMS       = 100
OBSERVED COUNTS (1447422)
1	30477524
2	18916665
3	12229777
4	7708122
5	4796886
6	2987660
7	1891318
8	1225112
9	818500
10	566224
11	406222
12	298600
13	225884
14	175181
15	139164
16	112278
17	92671
18	77282
19	65414
20	56107
21	48640
22	43020
23	38403
24	34333
25	30758
26	27675
27	25817
28	23514
29	21651
30	20285
31	18638
32	17172
33	16234
34	15139
35	14236
36	13196
37	12484
38	11930
39	11277
40	10745
41	10261
42	9468
43	8984
44	8996
45	8398
46	7971
47	7644
48	7350
49	6863
50	6581
51	6573
52	6211
53	5977
54	5799
55	5387
56	5237
57	5142
58	5048
59	4740
60	4628
61	4370
62	4345
63	4202
64	4082
65	3865
66	3808
67	3671
68	3543
69	3376
70	3324
71	3343
72	3189
73	3149
74	2944
75	2871
76	2951
77	2805
78	2806
79	2652
80	2521
81	2487
82	2489
83	2360
84	2350
85	2216
86	2155
87	2124
88	2132
89	2065
90	2023
91	1938
92	1786
93	1816
94	1886
95	1807
96	1787
97	1649
98	1682
99	1644
100	1681
101	1578
102	1496
103	1466
104	1489
105	1430
106	1426
107	1331
108	1366
109	1360
110	1311
111	1276
112	1249
113	1251
114	1211
115	1245
116	1233
117	1187
118	1138
119	1104
120	1094
121	1080
122	986
123	1091
124	1012
125	994
126	943
127	1002
128	934
129	955
130	927
131	911
132	919
133	900
134	862
135	869
136	859
137	831
138	810
139	748
140	770
141	759
142	791
143	737
144	789
145	746
146	752
147	726
148	700
149	696
150	637
151	659
152	654
153	681
154	687
155	632
156	647
157	633
158	550
159	595
160	572
161	551
162	550
163	536
164	521
165	546
166	544
167	558
168	517
169	497
170	482
171	522
172	479
173	469
174	466
175	481
176	475
177	434
178	451
179	421
180	480
181	434
182	433
183	457
184	415
185	471
186	426
187	444
188	384
189	442
190	399
191	388
192	393
193	346
194	348
195	378
196	351
197	378
198	349
199	365
200	336
201	356
202	334
203	350
204	327
205	336
206	335
207	310
208	308
209	277
210	336
211	301
212	305
213	264
214	300
215	312
216	297
217	283
218	288
219	267
220	278
221	259
222	238
223	287
224	280
225	276
226	262
227	287
228	286
229	268
230	224
231	238
232	225
233	228
234	246
235	238
236	232
237	237
238	231
239	222
240	228
241	214
242	200
243	242
244	217
245	200
246	221
247	219
248	214
249	211
250	210
251	211
252	223
253	188
254	203
255	177
256	218
257	237
258	214
259	214
260	182
261	165
262	192
263	206
264	200
265	155
266	167
267	172
268	173
269	171
270	177
271	181
272	175
273	176
274	177
275	161
276	178
277	180
278	156
279	165
280	161
281	163
282	176
283	140
284	167
285	167
286	149
287	160
288	141
289	161
290	148
291	131
292	128
293	145
294	141
295	143
296	124
297	142
298	136
299	131
300	160
301	148
302	136
303	131
304	147
305	121
306	115
307	120
308	129
309	117
310	123
311	125
312	142
313	120
314	119
315	94
316	128
317	124
318	110
319	107
320	137
321	131
322	111
323	115
324	118
325	104
326	107
327	116
328	114
329	107
330	92
331	106
332	83
333	105
334	90
335	98
336	108
337	103
338	109
339	94
340	88
341	97
342	100
343	105
344	92
345	86
346	105
347	113
348	105
349	90
350	106
351	82
352	75
353	95
354	102
355	72
356	88
357	86
358	81
359	95
360	82
361	79
362	99
363	72
364	84
365	82
366	82
367	91
368	86
369	83
370	72
371	58
372	78
373	87
374	71
375	82
376	66
377	81
378	78
379	72
380	93
381	71
382	66
383	88
384	65
385	81
386	69
387	79
388	87
389	71
390	62
391	74
392	55
393	66
394	69
395	63
396	49
397	67
398	60
399	64
400	61
401	60
402	53
403	60
404	67
405	58
406	73
407	55
408	65
409	63
410	63
411	58
412	76
413	56
414	60
415	62
416	54
417	67
418	60
419	59
420	65
421	58
422	57
423	65
424	73
425	51
426	42
427	54
428	62
429	69
430	49
431	49
432	67
433	54
434	57
435	41
436	48
437	59
438	49
439	47
440	69
441	57
442	48
443	54
444	59
445	68
446	51
447	54
448	47
449	65
450	49
451	46
452	48
453	39
454	48
455	55
456	45
457	44
458	50
459	33
460	35
461	45
462	48
463	40
464	52
465	43
466	44
467	40
468	50
469	54
470	41
471	42
472	37
473	45
474	44
475	56
476	52
477	40
478	38
479	39
480	41
481	34
482	48
483	40
484	39
485	36
486	53
487	38
488	32
489	37
490	32
491	38
492	33
493	49
494	46
495	35
496	40
497	42
498	42
499	32
500	39
501	36
502	32
503	32
504	37
505	36
506	38
507	43
508	38
509	46
510	36
511	36
512	37
513	41
514	23
515	27
516	40
517	37
518	40
519	41
520	33
521	33
522	29
523	41
524	35
525	35
526	33
527	40
528	27
529	37
530	30
531	36
532	34
533	31
534	38
535	38
536	27
537	30
538	29
539	34
540	29
541	41
542	28
543	29
544	28
545	28
546	36
547	20
548	34
549	26
550	31
551	30
552	28
553	34
554	34
555	29
556	32
557	40
558	33
559	28
560	30
561	17
562	27
563	26
564	22
565	31
566	26
567	30
568	18
569	22
570	27
571	29
572	28
573	27
574	29
575	20
576	27
577	26
578	27
579	24
580	22
581	20
582	31
583	22
584	28
585	19
586	23
587	24
588	30
589	29
590	25
591	21
592	24
593	25
594	21
595	31
596	26
597	20
598	30
599	20
600	29
601	20
602	20
603	19
604	22
605	13
606	23
607	15
608	22
609	17
610	23
611	20
612	17
613	14
614	18
615	26
616	18
617	21
618	18
619	17
620	25
621	27
622	18
623	24
624	16
625	22
626	30
627	23
628	14
629	18
630	18
631	20
632	22
633	22
634	25
635	18
636	24
637	23
638	23
639	18
640	12
641	25
642	20
643	21
644	23
645	21
646	23
647	19
648	23
649	9
650	17
651	14
652	12
653	28
654	16
655	19
656	21
657	19
658	25
659	13
660	20
661	17
662	20
663	20
664	25
665	10
666	18
667	14
668	13
669	17
670	13
671	14
672	14
673	12
674	11
675	16
676	17
677	12
678	15
679	16
680	17
681	8
682	18
683	26
684	17
685	15
686	15
687	16
688	15
689	21
690	10
691	17
692	22
693	15
694	15
695	18
696	23
697	19
698	16
699	9
700	20
701	18
702	16
703	14
704	10
705	20
706	12
707	18
708	9
709	18
710	20
711	12
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716	16
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720	9
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722	18
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726	11
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737	11
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740	12
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744	16
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754	15
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765	14
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783	14
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785	11
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790	11
791	9
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793	11
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796	13
797	9
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801	12
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804	9
805	10
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807	8
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812	12
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830	8
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846	7
847	8
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853	12
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857	11
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864	9
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887	13
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889	9
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891	9
892	11
893	8
894	9
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896	13
897	9
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900	7
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902	7
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906	7
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924	11
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937	6
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940	7
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950	11
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953	4
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955	7
956	11
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978	6
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980	8
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987	7
988	7
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1100	5
1101	2
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1800	4
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1920	1
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1930	2
1932	2
1933	1
1934	1
1935	1
1938	1
1942	1
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1945	1
1947	1
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1952	2
1953	1
1954	1
1955	1
1956	1
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1963	1
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1967	2
1968	1
1969	1
1971	1
1973	1
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1978	1
1981	1
1983	1
1984	1
1985	3
1986	1
1988	2
1993	1
1994	2
1999	2
2000	2
2001	1
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2006	2
2010	1
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2019	1
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2100	1
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2222	3
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2708	1
2710	1
2712	1
2721	1
2722	2
2723	1
2727	1
2730	1
2731	1
2732	1
2733	1
2737	1
2739	1
2742	2
2750	1
2754	1
2758	1
2772	1
2773	1
2779	1
2780	1
2781	1
2786	1
2788	1
2789	1
2795	1
2799	1
2800	1
2803	1
2806	1
2810	1
2823	1
2825	1
2826	1
2836	1
2839	1
2842	1
2845	1
2848	1
2854	1
2858	1
2861	1
2862	1
2864	1
2869	1
2873	1
2876	1
2877	1
2880	2
2885	1
2889	1
2894	1
2910	2
2917	1
2920	1
2921	1
2928	1
2935	1
2938	1
2942	1
2947	1
2954	1
2966	1
2968	2
2969	1
2972	1
2973	1
2988	1
2989	2
2990	1
2992	1
3000	2
3007	1
3008	1
3009	1
3013	1
3014	1
3018	1
3020	1
3028	1
3036	1
3037	1
3045	1
3047	1
3049	1
3053	1
3054	1
3056	1
3059	1
3063	1
3074	2
3085	1
3100	1
3126	2
3127	1
3128	2
3130	1
3149	1
3156	2
3160	1
3181	1
3183	1
3188	1
3189	1
3193	1
3200	1
3203	2
3214	1
3216	1
3220	1
3224	1
3234	1
3247	1
3263	1
3265	1
3269	1
3270	1
3275	1
3282	1
3302	1
3308	1
3318	1
3319	1
3320	1
3327	1
3333	1
3336	1
3339	1
3362	1
3363	1
3365	1
3380	1
3389	1
3394	1
3395	1
3408	1
3410	1
3414	1
3417	1
3421	1
3430	2
3436	1
3438	1
3449	1
3451	1
3452	1
3457	1
3470	1
3481	1
3490	1
3510	1
3521	1
3533	1
3537	1
3546	1
3549	1
3560	1
3563	1
3567	1
3569	1
3570	1
3587	1
3615	2
3617	2
3626	1
3633	1
3638	1
3651	1
3658	1
3673	1
3679	1
3680	1
3683	1
3719	1
3726	1
3735	1
3758	2
3805	1
3818	1
3834	1
3843	1
3852	1
3868	1
3878	1
3884	1
3885	1
3886	1
3891	1
3892	1
3905	1
3937	1
3948	1
3949	1
3961	1
3968	1
3992	1
4008	1
4020	1
4041	1
4048	1
4063	1
4064	2
4071	1
4076	1
4085	1
4094	2
4129	1
4150	1
4165	1
4170	1
4221	1
4230	1
4241	1
4251	2
4255	1
4280	1
4294	1
4297	1
4298	1
4339	1
4355	1
4357	1
4367	1
4374	1
4382	1
4383	1
4397	1
4408	1
4493	1
4497	1
4544	1
4547	1
4560	1
4571	1
4572	1
4582	1
4611	1
4617	1
4622	1
4678	1
4756	1
4761	1
4765	1
4821	1
4828	1
4841	1
4853	1
4927	1
4933	1
4964	1
4965	1
4973	1
5035	1
5043	1
5047	1
5055	1
5067	1
5226	1
5242	1
5256	1
5258	1
5279	2
5281	1
5294	1
5332	1
5372	1
5379	1
5409	1
5443	1
5491	1
5492	1
5540	1
5543	1
5609	1
5722	1
5782	2
5800	1
5842	1
5854	1
6019	1
6070	1
6183	1
6338	1
6417	1
6427	1
6430	1
6441	1
6445	1
6493	1
6941	1
7188	1
7308	1
7445	1
7450	1
7925	1
7972	1
8595	1
8678	1
8884	1
8961	1
8984	1
9166	1
9242	1
9446	1
9769	1
10088	1
10096	1
10538	1
10793	1
10837	1
11410	1
11493	1
11681	1
12067	1
14314	1
15426	1
16528	1
17313	1
25814	1
68087	1
1447421	1

[ESTIMATING YIELD CURVE]
[BOOTSTRAPPING HISTOGRAM]
_....__.__..._......_......_._......._.._..._..._.._..__......._........
...._.._.._.._._..._._....._.___................_..._..._..
[COMPUTING CONFIDENCE INTERVALS]
[WRITING OUTPUT]