Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/94/270cc83d3e019e05b6fbce4daff91f/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/94/270cc83d3e019e05b6fbce4daff91f/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bc/b7e14bc0a22c4c5d3fa7882cb42283/659_bCu-T1-TRNA-1_A23MVY2LT4_2
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ca/1e893de6997fd9ba4a69341d5f0265/659_bCu-T1-TRNA-1_A23MVY2LT4_2.sample_qc.tsv
==> STAGING COMPLETE (4 inputs)

Processing Kallisto file: 659_bCu-T1-TRNA-1_A23MVY2LT4_2/abundance.h5
Successfully converted 659_bCu-T1-TRNA-1_A23MVY2LT4_2/abundance.h5 to 659_bCu-T1-TRNA-1_A23MVY2LT4_2_kallisto_mqc.tsv
  Sample: 659_bCu-T1-TRNA-1_A23MVY2LT4_2
  Mean Fragment Length: 140.1 bp
  Median Fragment Length: 132.0 bp
  pct_mito_est_counts: 0.001%
  pct_ribo_est_counts: 0.573%
  pct_hk_est_counts: 0.25%
  pct_male_est_counts: 0.0%
  pct_mito_tpm: 0.002%
  pct_ribo_tpm: 1.969%
  pct_hk_tpm: 0.417%
  pct_male_tpm: 0.0%
  score_log2tpm1_mean_chry_signature: 0.419%