Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/93/50ce38a6df36119b17bb2e96d5f5af/659_bGW-T1-TRNA-1_A23MVY2LT4_1.Aligned.sortedByCoord.out.bam.bai
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1a/f73a0e22861201cc7c5cccf07ed1b4/ref_annot.bed
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9c/f34bb7a6c3bccb51135861e090ffa6/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9c/f34bb7a6c3bccb51135861e090ffa6/.command.run
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/db/e822b73d09ba71829a7ea4ecc56fb6/659_bGW-T1-TRNA-1_A23MVY2LT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)
processing ref_annot.bed ... Done
[W::hts_idx_load3] The index file is older than the data file: 659_bGW-T1-TRNA-1_A23MVY2LT4_1.Aligned.sortedByCoord.out.bam.bai
processing 659_bGW-T1-TRNA-1_A23MVY2LT4_1.Aligned.sortedByCoord.out.bam ... Finished