[quant] fragment length distribution will be estimated from the data
[index] k-mer length: 31
[index] number of targets: 194,360
[index] number of k-mers: 112,035,259
[quant] running in paired-end mode
[quant] will process pair 1: 659_bCu-T1-TRNA-1_A23MVY2LT4_2_1.fastp.fastq.gz
659_bCu-T1-TRNA-1_A23MVY2LT4_2_2.fastp.fastq.gz
[quant] finding pseudoalignments for the reads ...
[progress] 1M reads processed (97.0% mapped)
[progress] 2M reads processed (97.0% mapped)
[progress] 3M reads processed (97.0% mapped)
[progress] 4M reads processed (97.0% mapped)
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[progress] 78M reads processed (97.0% mapped)
[progress] 79M reads processed (97.0% mapped)
[progress] 80M reads processed (97.0% mapped)
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[progress] 82M reads processed (97.0% mapped)
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[progress] 84M reads processed (97.0% mapped)
[progress] 85M reads processed (97.0% mapped)
[progress] 86M reads processed (97.0% mapped)
[progress] 87M reads processed (97.0% mapped)
[progress] 88M reads processed (97.0% mapped)
[progress] 89M reads processed (97.0% mapped)
[progress] 90M reads processed (97.0% mapped)
[progress] 91M reads processed (97.0% mapped)
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[progress] 104M reads processed (97.0% mapped)
[progress] 105M reads processed (97.0% mapped)
[progress] 106M reads processed (97.0% mapped) done
[quant] processed 107,274,589 reads, 104,036,915 reads pseudoaligned
[quant] estimated average fragment length: 140.1
[ em] quantifying the abundances ... done
[ em] the Expectation-Maximization algorithm ran for 1,542 rounds