Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/05/375adc72c3c9103418c092798d30c9/659_Lx-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c3/eaa504e888bde35e3b2ca95decd777/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c3/eaa504e888bde35e3b2ca95decd777/.command.run
==> STAGING COMPLETE (3 inputs)

ls: *.csi: No such file or directory
ls: *.crai: No such file or directory