Using GATK jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar
Running:
java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xmx60620M -XX:-UsePerfData -XX:ParallelGCThreads=2 -jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar MarkDuplicates --INPUT 659_bua-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam --OUTPUT 659_bua-T1-TRNA-1_A23MVY2LT4_2.md.bam --METRICS_FILE 659_bua-T1-TRNA-1_A23MVY2LT4_2.md.bam.metrics --TMP_DIR . --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa -REMOVE_DUPLICATES false -VALIDATION_STRINGENCY LENIENT
09:11:33.756 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar!/com/intel/gkl/native/libgkl_compression.so
[Mon Jun 08 09:11:33 GMT 2026] MarkDuplicates --INPUT 659_bua-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam --OUTPUT 659_bua-T1-TRNA-1_A23MVY2LT4_2.md.bam --METRICS_FILE 659_bua-T1-TRNA-1_A23MVY2LT4_2.md.bam.metrics --REMOVE_DUPLICATES false --TMP_DIR . --VALIDATION_STRINGENCY LENIENT --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --FLOW_MODE false --FLOW_QUALITY_SUM_STRATEGY false --USE_END_IN_UNPAIRED_READS false --USE_UNPAIRED_CLIPPED_END false --UNPAIRED_END_UNCERTAINTY 0 --FLOW_SKIP_FIRST_N_FLOWS 0 --FLOW_Q_IS_KNOWN_END false --FLOW_EFFECTIVE_QUALITY_THRESHOLD 15 --ADD_PG_TAG_TO_READS true --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX <optimized capture of last three ':' separated fields as numeric values> --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Mon Jun 08 09:11:33 GMT 2026] Executing as ?@nf-08294a374d3afa19c4a39cc95cda9671-b6dcc-8qwxj on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 17.0.3-internal+0-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:4.4.0.0
INFO 2026-06-08 09:11:33 MarkDuplicates Start of doWork freeMemory: 105829904; totalMemory: 134217728; maxMemory: 63585648640
INFO 2026-06-08 09:11:33 MarkDuplicates Reading input file and constructing read end information.
INFO 2026-06-08 09:11:33 MarkDuplicates Will retain up to 230382784 data points before spilling to disk.
INFO 2026-06-08 09:11:38 MarkDuplicates Read 1,000,000 records. Elapsed time: 00:00:02s. Time for last 1,000,000: 2s. Last read position: chr1:1,051,645
INFO 2026-06-08 09:11:38 MarkDuplicates Tracking 4410 as yet unmatched pairs. 770 records in RAM.
INFO 2026-06-08 09:11:42 MarkDuplicates Read 2,000,000 records. Elapsed time: 00:00:06s. Time for last 1,000,000: 3s. Last read position: chr1:1,390,544
INFO 2026-06-08 09:11:42 MarkDuplicates Tracking 8560 as yet unmatched pairs. 849 records in RAM.
INFO 2026-06-08 09:11:44 MarkDuplicates Read 3,000,000 records. Elapsed time: 00:00:08s. Time for last 1,000,000: 2s. Last read position: chr1:3,781,005
INFO 2026-06-08 09:11:44 MarkDuplicates Tracking 11517 as yet unmatched pairs. 476 records in RAM.
INFO 2026-06-08 09:11:46 MarkDuplicates Read 4,000,000 records. Elapsed time: 00:00:10s. Time for last 1,000,000: 1s. Last read position: chr1:8,015,520
INFO 2026-06-08 09:11:46 MarkDuplicates Tracking 16007 as yet unmatched pairs. 1853 records in RAM.
INFO 2026-06-08 09:11:47 MarkDuplicates Read 5,000,000 records. Elapsed time: 00:00:12s. Time for last 1,000,000: 1s. Last read position: chr1:9,264,710
INFO 2026-06-08 09:11:47 MarkDuplicates Tracking 18122 as yet unmatched pairs. 1039 records in RAM.
INFO 2026-06-08 09:11:50 MarkDuplicates Read 6,000,000 records. Elapsed time: 00:00:14s. Time for last 1,000,000: 2s. Last read position: chr1:11,923,064
INFO 2026-06-08 09:11:50 MarkDuplicates Tracking 20893 as yet unmatched pairs. 675 records in RAM.
INFO 2026-06-08 09:11:52 MarkDuplicates Read 7,000,000 records. Elapsed time: 00:00:16s. Time for last 1,000,000: 1s. Last read position: chr1:15,661,392
INFO 2026-06-08 09:11:52 MarkDuplicates Tracking 23623 as yet unmatched pairs. 302 records in RAM.
INFO 2026-06-08 09:11:54 MarkDuplicates Read 8,000,000 records. Elapsed time: 00:00:18s. Time for last 1,000,000: 2s. Last read position: chr1:16,992,390
INFO 2026-06-08 09:11:54 MarkDuplicates Tracking 26541 as yet unmatched pairs. 343 records in RAM.
INFO 2026-06-08 09:11:56 MarkDuplicates Read 9,000,000 records. Elapsed time: 00:00:21s. Time for last 1,000,000: 2s. Last read position: chr1:19,242,397
INFO 2026-06-08 09:11:56 MarkDuplicates Tracking 29395 as yet unmatched pairs. 270 records in RAM.
INFO 2026-06-08 09:11:58 MarkDuplicates Read 10,000,000 records. Elapsed time: 00:00:23s. Time for last 1,000,000: 1s. Last read position: chr1:21,721,607
INFO 2026-06-08 09:11:58 MarkDuplicates Tracking 32714 as yet unmatched pairs. 586 records in RAM.
INFO 2026-06-08 09:12:00 MarkDuplicates Read 11,000,000 records. Elapsed time: 00:00:24s. Time for last 1,000,000: 1s. Last read position: chr1:22,639,431
INFO 2026-06-08 09:12:00 MarkDuplicates Tracking 37970 as yet unmatched pairs. 2741 records in RAM.
INFO 2026-06-08 09:12:01 MarkDuplicates Read 12,000,000 records. Elapsed time: 00:00:26s. Time for last 1,000,000: 1s. Last read position: chr1:23,796,839
INFO 2026-06-08 09:12:01 MarkDuplicates Tracking 38198 as yet unmatched pairs. 95 records in RAM.
INFO 2026-06-08 09:12:03 MarkDuplicates Read 13,000,000 records. Elapsed time: 00:00:28s. Time for last 1,000,000: 1s. Last read position: chr1:26,697,232
INFO 2026-06-08 09:12:03 MarkDuplicates Tracking 41291 as yet unmatched pairs. 457 records in RAM.
INFO 2026-06-08 09:12:06 MarkDuplicates Read 14,000,000 records. Elapsed time: 00:00:30s. Time for last 1,000,000: 2s. Last read position: chr1:27,879,990
INFO 2026-06-08 09:12:06 MarkDuplicates Tracking 44114 as yet unmatched pairs. 281 records in RAM.
INFO 2026-06-08 09:12:08 MarkDuplicates Read 15,000,000 records. Elapsed time: 00:00:33s. Time for last 1,000,000: 2s. Last read position: chr1:31,662,586
INFO 2026-06-08 09:12:08 MarkDuplicates Tracking 51252 as yet unmatched pairs. 4340 records in RAM.
INFO 2026-06-08 09:12:11 MarkDuplicates Read 16,000,000 records. Elapsed time: 00:00:35s. Time for last 1,000,000: 2s. Last read position: chr1:32,224,067
INFO 2026-06-08 09:12:11 MarkDuplicates Tracking 51682 as yet unmatched pairs. 1632 records in RAM.
INFO 2026-06-08 09:12:12 MarkDuplicates Read 17,000,000 records. Elapsed time: 00:00:37s. Time for last 1,000,000: 1s. Last read position: chr1:35,169,491
INFO 2026-06-08 09:12:12 MarkDuplicates Tracking 53025 as yet unmatched pairs. 25 records in RAM.
INFO 2026-06-08 09:12:14 MarkDuplicates Read 18,000,000 records. Elapsed time: 00:00:39s. Time for last 1,000,000: 1s. Last read position: chr1:36,304,529
INFO 2026-06-08 09:12:14 MarkDuplicates Tracking 56305 as yet unmatched pairs. 228 records in RAM.
INFO 2026-06-08 09:12:16 MarkDuplicates Read 19,000,000 records. Elapsed time: 00:00:40s. Time for last 1,000,000: 1s. Last read position: chr1:39,422,875
INFO 2026-06-08 09:12:16 MarkDuplicates Tracking 59596 as yet unmatched pairs. 508 records in RAM.
INFO 2026-06-08 09:12:17 MarkDuplicates Read 20,000,000 records. Elapsed time: 00:00:42s. Time for last 1,000,000: 1s. Last read position: chr1:40,749,617
INFO 2026-06-08 09:12:17 MarkDuplicates Tracking 62498 as yet unmatched pairs. 689 records in RAM.
INFO 2026-06-08 09:12:19 MarkDuplicates Read 21,000,000 records. Elapsed time: 00:00:44s. Time for last 1,000,000: 1s. Last read position: chr1:43,443,603
INFO 2026-06-08 09:12:19 MarkDuplicates Tracking 65333 as yet unmatched pairs. 326 records in RAM.
INFO 2026-06-08 09:12:21 MarkDuplicates Read 22,000,000 records. Elapsed time: 00:00:45s. Time for last 1,000,000: 1s. Last read position: chr1:45,568,936
INFO 2026-06-08 09:12:21 MarkDuplicates Tracking 68946 as yet unmatched pairs. 888 records in RAM.
INFO 2026-06-08 09:12:23 MarkDuplicates Read 23,000,000 records. Elapsed time: 00:00:47s. Time for last 1,000,000: 1s. Last read position: chr1:51,789,653
INFO 2026-06-08 09:12:23 MarkDuplicates Tracking 71678 as yet unmatched pairs. 705 records in RAM.
INFO 2026-06-08 09:12:26 MarkDuplicates Read 24,000,000 records. Elapsed time: 00:00:51s. Time for last 1,000,000: 3s. Last read position: chr1:56,512,125
INFO 2026-06-08 09:12:26 MarkDuplicates Tracking 73927 as yet unmatched pairs. 179 records in RAM.
INFO 2026-06-08 09:12:28 MarkDuplicates Read 25,000,000 records. Elapsed time: 00:00:53s. Time for last 1,000,000: 2s. Last read position: chr1:66,690,235
INFO 2026-06-08 09:12:28 MarkDuplicates Tracking 77759 as yet unmatched pairs. 1293 records in RAM.
INFO 2026-06-08 09:12:30 MarkDuplicates Read 26,000,000 records. Elapsed time: 00:00:55s. Time for last 1,000,000: 1s. Last read position: chr1:78,641,853
INFO 2026-06-08 09:12:30 MarkDuplicates Tracking 80008 as yet unmatched pairs. 874 records in RAM.
INFO 2026-06-08 09:12:32 MarkDuplicates Read 27,000,000 records. Elapsed time: 00:00:56s. Time for last 1,000,000: 1s. Last read position: chr1:86,125,776
INFO 2026-06-08 09:12:32 MarkDuplicates Tracking 82163 as yet unmatched pairs. 434 records in RAM.
INFO 2026-06-08 09:12:34 MarkDuplicates Read 28,000,000 records. Elapsed time: 00:00:59s. Time for last 1,000,000: 2s. Last read position: chr1:93,448,228
INFO 2026-06-08 09:12:34 MarkDuplicates Tracking 84948 as yet unmatched pairs. 477 records in RAM.
INFO 2026-06-08 09:12:36 MarkDuplicates Read 29,000,000 records. Elapsed time: 00:01:00s. Time for last 1,000,000: 1s. Last read position: chr1:102,898,156
INFO 2026-06-08 09:12:36 MarkDuplicates Tracking 87480 as yet unmatched pairs. 370 records in RAM.
INFO 2026-06-08 09:12:38 MarkDuplicates Read 30,000,000 records. Elapsed time: 00:01:02s. Time for last 1,000,000: 1s. Last read position: chr1:109,488,440
INFO 2026-06-08 09:12:38 MarkDuplicates Tracking 90100 as yet unmatched pairs. 134 records in RAM.
INFO 2026-06-08 09:12:39 MarkDuplicates Read 31,000,000 records. Elapsed time: 00:01:04s. Time for last 1,000,000: 1s. Last read position: chr1:112,699,957
INFO 2026-06-08 09:12:39 MarkDuplicates Tracking 93349 as yet unmatched pairs. 341 records in RAM.
INFO 2026-06-08 09:12:42 MarkDuplicates Read 32,000,000 records. Elapsed time: 00:01:06s. Time for last 1,000,000: 2s. Last read position: chr1:114,463,461
INFO 2026-06-08 09:12:42 MarkDuplicates Tracking 96993 as yet unmatched pairs. 1181 records in RAM.
INFO 2026-06-08 09:12:44 MarkDuplicates Read 33,000,000 records. Elapsed time: 00:01:08s. Time for last 1,000,000: 2s. Last read position: chr1:119,623,337
INFO 2026-06-08 09:12:44 MarkDuplicates Tracking 99054 as yet unmatched pairs. 261 records in RAM.
INFO 2026-06-08 09:12:45 MarkDuplicates Read 34,000,000 records. Elapsed time: 00:01:10s. Time for last 1,000,000: 1s. Last read position: chr1:119,941,600
INFO 2026-06-08 09:12:45 MarkDuplicates Tracking 104634 as yet unmatched pairs. 2814 records in RAM.
INFO 2026-06-08 09:12:48 MarkDuplicates Read 35,000,000 records. Elapsed time: 00:01:13s. Time for last 1,000,000: 2s. Last read position: chr1:120,578,822
INFO 2026-06-08 09:12:48 MarkDuplicates Tracking 104325 as yet unmatched pairs. 181 records in RAM.
INFO 2026-06-08 09:12:50 MarkDuplicates Read 36,000,000 records. Elapsed time: 00:01:14s. Time for last 1,000,000: 1s. Last read position: chr1:145,856,640
INFO 2026-06-08 09:12:50 MarkDuplicates Tracking 106495 as yet unmatched pairs. 936 records in RAM.
INFO 2026-06-08 09:12:51 MarkDuplicates Read 37,000,000 records. Elapsed time: 00:01:15s. Time for last 1,000,000: 1s. Last read position: chr1:146,988,928
INFO 2026-06-08 09:12:51 MarkDuplicates Tracking 107119 as yet unmatched pairs. 392 records in RAM.
INFO 2026-06-08 09:12:52 MarkDuplicates Read 38,000,000 records. Elapsed time: 00:01:17s. Time for last 1,000,000: 1s. Last read position: chr1:148,607,385
INFO 2026-06-08 09:12:52 MarkDuplicates Tracking 109503 as yet unmatched pairs. 1857 records in RAM.
INFO 2026-06-08 09:12:54 MarkDuplicates Read 39,000,000 records. Elapsed time: 00:01:18s. Time for last 1,000,000: 1s. Last read position: chr1:149,840,720
INFO 2026-06-08 09:12:54 MarkDuplicates Tracking 110968 as yet unmatched pairs. 1828 records in RAM.
INFO 2026-06-08 09:12:55 MarkDuplicates Read 40,000,000 records. Elapsed time: 00:01:20s. Time for last 1,000,000: 1s. Last read position: chr1:150,266,548
INFO 2026-06-08 09:12:55 MarkDuplicates Tracking 113217 as yet unmatched pairs. 1896 records in RAM.
INFO 2026-06-08 09:12:57 MarkDuplicates Read 41,000,000 records. Elapsed time: 00:01:22s. Time for last 1,000,000: 1s. Last read position: chr1:150,804,180
INFO 2026-06-08 09:12:57 MarkDuplicates Tracking 115277 as yet unmatched pairs. 1137 records in RAM.
INFO 2026-06-08 09:12:59 MarkDuplicates Read 42,000,000 records. Elapsed time: 00:01:23s. Time for last 1,000,000: 1s. Last read position: chr1:151,694,380
INFO 2026-06-08 09:12:59 MarkDuplicates Tracking 117404 as yet unmatched pairs. 505 records in RAM.
INFO 2026-06-08 09:13:01 MarkDuplicates Read 43,000,000 records. Elapsed time: 00:01:25s. Time for last 1,000,000: 1s. Last read position: chr1:153,764,189
INFO 2026-06-08 09:13:01 MarkDuplicates Tracking 120091 as yet unmatched pairs. 1061 records in RAM.
INFO 2026-06-08 09:13:03 MarkDuplicates Read 44,000,000 records. Elapsed time: 00:01:27s. Time for last 1,000,000: 1s. Last read position: chr1:154,173,192
INFO 2026-06-08 09:13:03 MarkDuplicates Tracking 126794 as yet unmatched pairs. 4996 records in RAM.
INFO 2026-06-08 09:13:04 MarkDuplicates Read 45,000,000 records. Elapsed time: 00:01:29s. Time for last 1,000,000: 1s. Last read position: chr1:154,963,792
INFO 2026-06-08 09:13:04 MarkDuplicates Tracking 126357 as yet unmatched pairs. 1856 records in RAM.
INFO 2026-06-08 09:13:07 MarkDuplicates Read 46,000,000 records. Elapsed time: 00:01:31s. Time for last 1,000,000: 2s. Last read position: chr1:155,660,224
INFO 2026-06-08 09:13:07 MarkDuplicates Tracking 128431 as yet unmatched pairs. 1262 records in RAM.
INFO 2026-06-08 09:13:09 MarkDuplicates Read 47,000,000 records. Elapsed time: 00:01:34s. Time for last 1,000,000: 2s. Last read position: chr1:156,115,160
INFO 2026-06-08 09:13:09 MarkDuplicates Tracking 135100 as yet unmatched pairs. 4393 records in RAM.
INFO 2026-06-08 09:13:11 MarkDuplicates Read 48,000,000 records. Elapsed time: 00:01:36s. Time for last 1,000,000: 1s. Last read position: chr1:156,137,123
INFO 2026-06-08 09:13:11 MarkDuplicates Tracking 148815 as yet unmatched pairs. 14615 records in RAM.
INFO 2026-06-08 09:13:14 MarkDuplicates Read 49,000,000 records. Elapsed time: 00:01:38s. Time for last 1,000,000: 2s. Last read position: chr1:156,669,733
INFO 2026-06-08 09:13:14 MarkDuplicates Tracking 139380 as yet unmatched pairs. 1657 records in RAM.
INFO 2026-06-08 09:13:16 MarkDuplicates Read 50,000,000 records. Elapsed time: 00:01:41s. Time for last 1,000,000: 2s. Last read position: chr1:156,874,963
INFO 2026-06-08 09:13:16 MarkDuplicates Tracking 143993 as yet unmatched pairs. 3064 records in RAM.
INFO 2026-06-08 09:13:18 MarkDuplicates Read 51,000,000 records. Elapsed time: 00:01:43s. Time for last 1,000,000: 1s. Last read position: chr1:160,217,470
INFO 2026-06-08 09:13:18 MarkDuplicates Tracking 143937 as yet unmatched pairs. 308 records in RAM.
INFO 2026-06-08 09:13:20 MarkDuplicates Read 52,000,000 records. Elapsed time: 00:01:45s. Time for last 1,000,000: 2s. Last read position: chr1:161,196,254
INFO 2026-06-08 09:13:20 MarkDuplicates Tracking 147333 as yet unmatched pairs. 842 records in RAM.
INFO 2026-06-08 09:13:22 MarkDuplicates Read 53,000,000 records. Elapsed time: 00:01:47s. Time for last 1,000,000: 1s. Last read position: chr1:162,006,303
INFO 2026-06-08 09:13:22 MarkDuplicates Tracking 149638 as yet unmatched pairs. 497 records in RAM.
INFO 2026-06-08 09:13:24 MarkDuplicates Read 54,000,000 records. Elapsed time: 00:01:49s. Time for last 1,000,000: 1s. Last read position: chr1:170,664,409
INFO 2026-06-08 09:13:24 MarkDuplicates Tracking 152801 as yet unmatched pairs. 894 records in RAM.
INFO 2026-06-08 09:13:26 MarkDuplicates Read 55,000,000 records. Elapsed time: 00:01:50s. Time for last 1,000,000: 1s. Last read position: chr1:174,978,825
INFO 2026-06-08 09:13:26 MarkDuplicates Tracking 154606 as yet unmatched pairs. 96 records in RAM.
INFO 2026-06-08 09:13:28 MarkDuplicates Read 56,000,000 records. Elapsed time: 00:01:52s. Time for last 1,000,000: 1s. Last read position: chr1:181,089,157
INFO 2026-06-08 09:13:28 MarkDuplicates Tracking 158475 as yet unmatched pairs. 1151 records in RAM.
INFO 2026-06-08 09:13:30 MarkDuplicates Read 57,000,000 records. Elapsed time: 00:01:54s. Time for last 1,000,000: 2s. Last read position: chr1:183,135,139
INFO 2026-06-08 09:13:30 MarkDuplicates Tracking 161120 as yet unmatched pairs. 576 records in RAM.
INFO 2026-06-08 09:13:32 MarkDuplicates Read 58,000,000 records. Elapsed time: 00:01:56s. Time for last 1,000,000: 1s. Last read position: chr1:186,306,821
INFO 2026-06-08 09:13:32 MarkDuplicates Tracking 167547 as yet unmatched pairs. 4470 records in RAM.
INFO 2026-06-08 09:13:34 MarkDuplicates Read 59,000,000 records. Elapsed time: 00:01:58s. Time for last 1,000,000: 1s. Last read position: chr1:186,307,631
INFO 2026-06-08 09:13:34 MarkDuplicates Tracking 166280 as yet unmatched pairs. 1636 records in RAM.
INFO 2026-06-08 09:13:36 MarkDuplicates Read 60,000,000 records. Elapsed time: 00:02:00s. Time for last 1,000,000: 2s. Last read position: chr1:186,338,046
INFO 2026-06-08 09:13:36 MarkDuplicates Tracking 167801 as yet unmatched pairs. 1230 records in RAM.
INFO 2026-06-08 09:13:37 MarkDuplicates Read 61,000,000 records. Elapsed time: 00:02:02s. Time for last 1,000,000: 1s. Last read position: chr1:196,677,477
INFO 2026-06-08 09:13:37 MarkDuplicates Tracking 171460 as yet unmatched pairs. 2463 records in RAM.
INFO 2026-06-08 09:13:39 MarkDuplicates Read 62,000,000 records. Elapsed time: 00:02:04s. Time for last 1,000,000: 1s. Last read position: chr1:201,649,191
INFO 2026-06-08 09:13:39 MarkDuplicates Tracking 172324 as yet unmatched pairs. 560 records in RAM.
INFO 2026-06-08 09:13:41 MarkDuplicates Read 63,000,000 records. Elapsed time: 00:02:05s. Time for last 1,000,000: 1s. Last read position: chr1:203,799,209
INFO 2026-06-08 09:13:41 MarkDuplicates Tracking 175911 as yet unmatched pairs. 1287 records in RAM.
INFO 2026-06-08 09:13:43 MarkDuplicates Read 64,000,000 records. Elapsed time: 00:02:07s. Time for last 1,000,000: 1s. Last read position: chr1:206,421,274
INFO 2026-06-08 09:13:43 MarkDuplicates Tracking 177883 as yet unmatched pairs. 648 records in RAM.
INFO 2026-06-08 09:13:44 MarkDuplicates Read 65,000,000 records. Elapsed time: 00:02:09s. Time for last 1,000,000: 1s. Last read position: chr1:214,644,959
INFO 2026-06-08 09:13:44 MarkDuplicates Tracking 180391 as yet unmatched pairs. 307 records in RAM.
INFO 2026-06-08 09:13:46 MarkDuplicates Read 66,000,000 records. Elapsed time: 00:02:11s. Time for last 1,000,000: 1s. Last read position: chr1:223,793,310
INFO 2026-06-08 09:13:46 MarkDuplicates Tracking 182934 as yet unmatched pairs. 202 records in RAM.
INFO 2026-06-08 09:13:48 MarkDuplicates Read 67,000,000 records. Elapsed time: 00:02:13s. Time for last 1,000,000: 1s. Last read position: chr1:227,028,755
INFO 2026-06-08 09:13:48 MarkDuplicates Tracking 186134 as yet unmatched pairs. 633 records in RAM.
INFO 2026-06-08 09:13:50 MarkDuplicates Read 68,000,000 records. Elapsed time: 00:02:15s. Time for last 1,000,000: 1s. Last read position: chr1:231,421,172
INFO 2026-06-08 09:13:50 MarkDuplicates Tracking 189371 as yet unmatched pairs. 295 records in RAM.
INFO 2026-06-08 09:13:52 MarkDuplicates Read 69,000,000 records. Elapsed time: 00:02:16s. Time for last 1,000,000: 1s. Last read position: chr1:235,240,317
INFO 2026-06-08 09:13:52 MarkDuplicates Tracking 192729 as yet unmatched pairs. 305 records in RAM.
INFO 2026-06-08 09:13:54 MarkDuplicates Read 70,000,000 records. Elapsed time: 00:02:19s. Time for last 1,000,000: 2s. Last read position: chr1:243,165,151
INFO 2026-06-08 09:13:54 MarkDuplicates Tracking 195876 as yet unmatched pairs. 555 records in RAM.
INFO 2026-06-08 09:13:57 MarkDuplicates Read 71,000,000 records. Elapsed time: 00:02:21s. Time for last 1,000,000: 2s. Last read position: chr1:246,758,265
INFO 2026-06-08 09:13:57 MarkDuplicates Tracking 198279 as yet unmatched pairs. 227 records in RAM.
INFO 2026-06-08 09:14:00 MarkDuplicates Read 72,000,000 records. Elapsed time: 00:02:25s. Time for last 1,000,000: 3s. Last read position: chr2:5,692,696
INFO 2026-06-08 09:14:00 MarkDuplicates Tracking 201680 as yet unmatched pairs. 200692 records in RAM.
INFO 2026-06-08 09:14:03 MarkDuplicates Read 73,000,000 records. Elapsed time: 00:02:27s. Time for last 1,000,000: 2s. Last read position: chr2:12,740,668
INFO 2026-06-08 09:14:03 MarkDuplicates Tracking 205596 as yet unmatched pairs. 204583 records in RAM.
INFO 2026-06-08 09:14:05 MarkDuplicates Read 74,000,000 records. Elapsed time: 00:02:29s. Time for last 1,000,000: 2s. Last read position: chr2:26,187,926
INFO 2026-06-08 09:14:05 MarkDuplicates Tracking 207227 as yet unmatched pairs. 206199 records in RAM.
INFO 2026-06-08 09:14:07 MarkDuplicates Read 75,000,000 records. Elapsed time: 00:02:31s. Time for last 1,000,000: 1s. Last read position: chr2:27,378,233
INFO 2026-06-08 09:14:07 MarkDuplicates Tracking 210896 as yet unmatched pairs. 209858 records in RAM.
INFO 2026-06-08 09:14:09 MarkDuplicates Read 76,000,000 records. Elapsed time: 00:02:34s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,253
INFO 2026-06-08 09:14:09 MarkDuplicates Tracking 225652 as yet unmatched pairs. 211821 records in RAM.
INFO 2026-06-08 09:14:11 MarkDuplicates Read 77,000,000 records. Elapsed time: 00:02:36s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,264
INFO 2026-06-08 09:14:11 MarkDuplicates Tracking 310334 as yet unmatched pairs. 208714 records in RAM.
INFO 2026-06-08 09:14:14 MarkDuplicates Read 78,000,000 records. Elapsed time: 00:02:39s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,264
INFO 2026-06-08 09:14:14 MarkDuplicates Tracking 981535 as yet unmatched pairs. 184558 records in RAM.
INFO 2026-06-08 09:14:16 MarkDuplicates Read 79,000,000 records. Elapsed time: 00:02:41s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,402
INFO 2026-06-08 09:14:16 MarkDuplicates Tracking 1486511 as yet unmatched pairs. 166047 records in RAM.
INFO 2026-06-08 09:14:18 MarkDuplicates Read 80,000,000 records. Elapsed time: 00:02:43s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,406
INFO 2026-06-08 09:14:18 MarkDuplicates Tracking 1499741 as yet unmatched pairs. 165583 records in RAM.
INFO 2026-06-08 09:14:20 MarkDuplicates Read 81,000,000 records. Elapsed time: 00:02:44s. Time for last 1,000,000: 1s. Last read position: chr2:33,171,024
INFO 2026-06-08 09:14:20 MarkDuplicates Tracking 1589842 as yet unmatched pairs. 162193 records in RAM.
INFO 2026-06-08 09:14:22 MarkDuplicates Read 82,000,000 records. Elapsed time: 00:02:46s. Time for last 1,000,000: 2s. Last read position: chr2:42,763,399
INFO 2026-06-08 09:14:22 MarkDuplicates Tracking 1586995 as yet unmatched pairs. 159330 records in RAM.
INFO 2026-06-08 09:14:24 MarkDuplicates Read 83,000,000 records. Elapsed time: 00:02:48s. Time for last 1,000,000: 2s. Last read position: chr2:48,581,500
INFO 2026-06-08 09:14:24 MarkDuplicates Tracking 1583927 as yet unmatched pairs. 156232 records in RAM.
INFO 2026-06-08 09:14:26 MarkDuplicates Read 84,000,000 records. Elapsed time: 00:02:50s. Time for last 1,000,000: 1s. Last read position: chr2:55,295,674
INFO 2026-06-08 09:14:26 MarkDuplicates Tracking 1582159 as yet unmatched pairs. 154444 records in RAM.
INFO 2026-06-08 09:14:28 MarkDuplicates Read 85,000,000 records. Elapsed time: 00:02:52s. Time for last 1,000,000: 2s. Last read position: chr2:62,707,185
INFO 2026-06-08 09:14:28 MarkDuplicates Tracking 1578608 as yet unmatched pairs. 150873 records in RAM.
INFO 2026-06-08 09:14:30 MarkDuplicates Read 86,000,000 records. Elapsed time: 00:02:54s. Time for last 1,000,000: 1s. Last read position: chr2:70,214,349
INFO 2026-06-08 09:14:30 MarkDuplicates Tracking 1576596 as yet unmatched pairs. 148850 records in RAM.
INFO 2026-06-08 09:14:32 MarkDuplicates Read 87,000,000 records. Elapsed time: 00:02:57s. Time for last 1,000,000: 2s. Last read position: chr2:74,527,769
INFO 2026-06-08 09:14:32 MarkDuplicates Tracking 1573940 as yet unmatched pairs. 146173 records in RAM.
INFO 2026-06-08 09:14:34 MarkDuplicates Read 88,000,000 records. Elapsed time: 00:02:59s. Time for last 1,000,000: 1s. Last read position: chr2:87,752,268
INFO 2026-06-08 09:14:34 MarkDuplicates Tracking 1570422 as yet unmatched pairs. 142642 records in RAM.
INFO 2026-06-08 09:14:36 MarkDuplicates Read 89,000,000 records. Elapsed time: 00:03:00s. Time for last 1,000,000: 1s. Last read position: chr2:97,241,286
INFO 2026-06-08 09:14:36 MarkDuplicates Tracking 1567642 as yet unmatched pairs. 139826 records in RAM.
INFO 2026-06-08 09:14:38 MarkDuplicates Read 90,000,000 records. Elapsed time: 00:03:03s. Time for last 1,000,000: 2s. Last read position: chr2:101,885,231
INFO 2026-06-08 09:14:38 MarkDuplicates Tracking 1565692 as yet unmatched pairs. 137855 records in RAM.
INFO 2026-06-08 09:14:40 MarkDuplicates Read 91,000,000 records. Elapsed time: 00:03:04s. Time for last 1,000,000: 1s. Last read position: chr2:108,765,318
INFO 2026-06-08 09:14:40 MarkDuplicates Tracking 1564208 as yet unmatched pairs. 136363 records in RAM.
INFO 2026-06-08 09:14:41 MarkDuplicates Read 92,000,000 records. Elapsed time: 00:03:06s. Time for last 1,000,000: 1s. Last read position: chr2:109,920,312
INFO 2026-06-08 09:14:41 MarkDuplicates Tracking 1561418 as yet unmatched pairs. 133563 records in RAM.
INFO 2026-06-08 09:14:43 MarkDuplicates Read 93,000,000 records. Elapsed time: 00:03:08s. Time for last 1,000,000: 1s. Last read position: chr2:112,389,332
INFO 2026-06-08 09:14:43 MarkDuplicates Tracking 1560750 as yet unmatched pairs. 132889 records in RAM.
INFO 2026-06-08 09:14:45 MarkDuplicates Read 94,000,000 records. Elapsed time: 00:03:09s. Time for last 1,000,000: 1s. Last read position: chr2:119,247,876
INFO 2026-06-08 09:14:45 MarkDuplicates Tracking 1557739 as yet unmatched pairs. 129871 records in RAM.
INFO 2026-06-08 09:14:47 MarkDuplicates Read 95,000,000 records. Elapsed time: 00:03:11s. Time for last 1,000,000: 1s. Last read position: chr2:134,254,500
INFO 2026-06-08 09:14:47 MarkDuplicates Tracking 1555115 as yet unmatched pairs. 127213 records in RAM.
INFO 2026-06-08 09:14:49 MarkDuplicates Read 96,000,000 records. Elapsed time: 00:03:14s. Time for last 1,000,000: 2s. Last read position: chr2:151,463,373
INFO 2026-06-08 09:14:49 MarkDuplicates Tracking 1552263 as yet unmatched pairs. 124338 records in RAM.
INFO 2026-06-08 09:14:51 MarkDuplicates Read 97,000,000 records. Elapsed time: 00:03:16s. Time for last 1,000,000: 1s. Last read position: chr2:162,213,974
INFO 2026-06-08 09:14:51 MarkDuplicates Tracking 1549917 as yet unmatched pairs. 121970 records in RAM.
INFO 2026-06-08 09:14:53 MarkDuplicates Read 98,000,000 records. Elapsed time: 00:03:18s. Time for last 1,000,000: 1s. Last read position: chr2:174,567,914
INFO 2026-06-08 09:14:53 MarkDuplicates Tracking 1547539 as yet unmatched pairs. 119554 records in RAM.
INFO 2026-06-08 09:14:55 MarkDuplicates Read 99,000,000 records. Elapsed time: 00:03:20s. Time for last 1,000,000: 2s. Last read position: chr2:179,950,639
INFO 2026-06-08 09:14:55 MarkDuplicates Tracking 1543993 as yet unmatched pairs. 115986 records in RAM.
INFO 2026-06-08 09:14:58 MarkDuplicates Read 100,000,000 records. Elapsed time: 00:03:23s. Time for last 1,000,000: 2s. Last read position: chr2:187,503,700
INFO 2026-06-08 09:14:58 MarkDuplicates Tracking 1541826 as yet unmatched pairs. 113805 records in RAM.
INFO 2026-06-08 09:15:00 MarkDuplicates Read 101,000,000 records. Elapsed time: 00:03:25s. Time for last 1,000,000: 2s. Last read position: chr2:188,994,585
INFO 2026-06-08 09:15:00 MarkDuplicates Tracking 1547030 as yet unmatched pairs. 119006 records in RAM.
INFO 2026-06-08 09:15:03 MarkDuplicates Read 102,000,000 records. Elapsed time: 00:03:27s. Time for last 1,000,000: 2s. Last read position: chr2:189,002,325
INFO 2026-06-08 09:15:03 MarkDuplicates Tracking 1547725 as yet unmatched pairs. 119687 records in RAM.
INFO 2026-06-08 09:15:05 MarkDuplicates Read 103,000,000 records. Elapsed time: 00:03:29s. Time for last 1,000,000: 2s. Last read position: chr2:189,010,236
INFO 2026-06-08 09:15:05 MarkDuplicates Tracking 1538252 as yet unmatched pairs. 110207 records in RAM.
INFO 2026-06-08 09:15:07 MarkDuplicates Read 104,000,000 records. Elapsed time: 00:03:31s. Time for last 1,000,000: 2s. Last read position: chr2:189,065,031
INFO 2026-06-08 09:15:07 MarkDuplicates Tracking 1529826 as yet unmatched pairs. 101773 records in RAM.
INFO 2026-06-08 09:15:09 MarkDuplicates Read 105,000,000 records. Elapsed time: 00:03:33s. Time for last 1,000,000: 2s. Last read position: chr2:190,984,351
INFO 2026-06-08 09:15:09 MarkDuplicates Tracking 1529073 as yet unmatched pairs. 101013 records in RAM.
INFO 2026-06-08 09:15:11 MarkDuplicates Read 106,000,000 records. Elapsed time: 00:03:36s. Time for last 1,000,000: 2s. Last read position: chr2:197,405,149
INFO 2026-06-08 09:15:11 MarkDuplicates Tracking 1524243 as yet unmatched pairs. 96156 records in RAM.
INFO 2026-06-08 09:15:13 MarkDuplicates Read 107,000,000 records. Elapsed time: 00:03:38s. Time for last 1,000,000: 1s. Last read position: chr2:202,297,462
INFO 2026-06-08 09:15:13 MarkDuplicates Tracking 1520132 as yet unmatched pairs. 92029 records in RAM.
INFO 2026-06-08 09:15:15 MarkDuplicates Read 108,000,000 records. Elapsed time: 00:03:40s. Time for last 1,000,000: 2s. Last read position: chr2:209,730,282
INFO 2026-06-08 09:15:15 MarkDuplicates Tracking 1517453 as yet unmatched pairs. 89342 records in RAM.
INFO 2026-06-08 09:15:17 MarkDuplicates Read 109,000,000 records. Elapsed time: 00:03:42s. Time for last 1,000,000: 1s. Last read position: chr2:215,362,014
INFO 2026-06-08 09:15:17 MarkDuplicates Tracking 1549799 as yet unmatched pairs. 121682 records in RAM.
INFO 2026-06-08 09:15:19 MarkDuplicates Read 110,000,000 records. Elapsed time: 00:03:44s. Time for last 1,000,000: 2s. Last read position: chr2:215,367,901
INFO 2026-06-08 09:15:19 MarkDuplicates Tracking 1531695 as yet unmatched pairs. 103569 records in RAM.
INFO 2026-06-08 09:15:21 MarkDuplicates Read 111,000,000 records. Elapsed time: 00:03:46s. Time for last 1,000,000: 2s. Last read position: chr2:215,371,969
INFO 2026-06-08 09:15:21 MarkDuplicates Tracking 1550217 as yet unmatched pairs. 122073 records in RAM.
INFO 2026-06-08 09:15:23 MarkDuplicates Read 112,000,000 records. Elapsed time: 00:03:48s. Time for last 1,000,000: 2s. Last read position: chr2:215,372,238
INFO 2026-06-08 09:15:23 MarkDuplicates Tracking 1545856 as yet unmatched pairs. 117704 records in RAM.
INFO 2026-06-08 09:15:26 MarkDuplicates Read 113,000,000 records. Elapsed time: 00:03:50s. Time for last 1,000,000: 2s. Last read position: chr2:215,375,284
INFO 2026-06-08 09:15:26 MarkDuplicates Tracking 1536368 as yet unmatched pairs. 108214 records in RAM.
INFO 2026-06-08 09:15:28 MarkDuplicates Read 114,000,000 records. Elapsed time: 00:03:52s. Time for last 1,000,000: 2s. Last read position: chr2:215,376,569
INFO 2026-06-08 09:15:28 MarkDuplicates Tracking 1550979 as yet unmatched pairs. 122821 records in RAM.
INFO 2026-06-08 09:15:30 MarkDuplicates Read 115,000,000 records. Elapsed time: 00:03:54s. Time for last 1,000,000: 1s. Last read position: chr2:215,379,269
INFO 2026-06-08 09:15:30 MarkDuplicates Tracking 1547627 as yet unmatched pairs. 119459 records in RAM.
INFO 2026-06-08 09:15:32 MarkDuplicates Read 116,000,000 records. Elapsed time: 00:03:57s. Time for last 1,000,000: 2s. Last read position: chr2:215,383,381
INFO 2026-06-08 09:15:32 MarkDuplicates Tracking 1527468 as yet unmatched pairs. 99298 records in RAM.
INFO 2026-06-08 09:15:34 MarkDuplicates Read 117,000,000 records. Elapsed time: 00:03:58s. Time for last 1,000,000: 1s. Last read position: chr2:215,386,804
INFO 2026-06-08 09:15:34 MarkDuplicates Tracking 1527127 as yet unmatched pairs. 98948 records in RAM.
INFO 2026-06-08 09:15:36 MarkDuplicates Read 118,000,000 records. Elapsed time: 00:04:00s. Time for last 1,000,000: 1s. Last read position: chr2:215,393,008
INFO 2026-06-08 09:15:36 MarkDuplicates Tracking 1520901 as yet unmatched pairs. 92712 records in RAM.
INFO 2026-06-08 09:15:38 MarkDuplicates Read 119,000,000 records. Elapsed time: 00:04:02s. Time for last 1,000,000: 1s. Last read position: chr2:215,397,714
INFO 2026-06-08 09:15:38 MarkDuplicates Tracking 1516419 as yet unmatched pairs. 88228 records in RAM.
INFO 2026-06-08 09:15:39 MarkDuplicates Read 120,000,000 records. Elapsed time: 00:04:04s. Time for last 1,000,000: 1s. Last read position: chr2:215,404,650
INFO 2026-06-08 09:15:39 MarkDuplicates Tracking 1511026 as yet unmatched pairs. 82824 records in RAM.
INFO 2026-06-08 09:15:42 MarkDuplicates Read 121,000,000 records. Elapsed time: 00:04:06s. Time for last 1,000,000: 2s. Last read position: chr2:215,407,300
INFO 2026-06-08 09:15:42 MarkDuplicates Tracking 1515760 as yet unmatched pairs. 87550 records in RAM.
INFO 2026-06-08 09:15:44 MarkDuplicates Read 122,000,000 records. Elapsed time: 00:04:09s. Time for last 1,000,000: 2s. Last read position: chr2:215,409,711
INFO 2026-06-08 09:15:44 MarkDuplicates Tracking 1499665 as yet unmatched pairs. 71450 records in RAM.
INFO 2026-06-08 09:15:46 MarkDuplicates Read 123,000,000 records. Elapsed time: 00:04:11s. Time for last 1,000,000: 1s. Last read position: chr2:215,414,916
INFO 2026-06-08 09:15:46 MarkDuplicates Tracking 1520407 as yet unmatched pairs. 92189 records in RAM.
INFO 2026-06-08 09:15:49 MarkDuplicates Read 124,000,000 records. Elapsed time: 00:04:13s. Time for last 1,000,000: 2s. Last read position: chr2:215,423,400
INFO 2026-06-08 09:15:49 MarkDuplicates Tracking 1496663 as yet unmatched pairs. 68439 records in RAM.
INFO 2026-06-08 09:15:51 MarkDuplicates Read 125,000,000 records. Elapsed time: 00:04:15s. Time for last 1,000,000: 2s. Last read position: chr2:215,425,265
INFO 2026-06-08 09:15:51 MarkDuplicates Tracking 1493829 as yet unmatched pairs. 65603 records in RAM.
INFO 2026-06-08 09:15:53 MarkDuplicates Read 126,000,000 records. Elapsed time: 00:04:17s. Time for last 1,000,000: 1s. Last read position: chr2:215,431,847
INFO 2026-06-08 09:15:53 MarkDuplicates Tracking 1501857 as yet unmatched pairs. 73621 records in RAM.
INFO 2026-06-08 09:15:55 MarkDuplicates Read 127,000,000 records. Elapsed time: 00:04:19s. Time for last 1,000,000: 1s. Last read position: chr2:215,434,814
INFO 2026-06-08 09:15:55 MarkDuplicates Tracking 1508856 as yet unmatched pairs. 80618 records in RAM.
INFO 2026-06-08 09:15:56 MarkDuplicates Read 128,000,000 records. Elapsed time: 00:04:21s. Time for last 1,000,000: 1s. Last read position: chr2:216,663,960
INFO 2026-06-08 09:15:56 MarkDuplicates Tracking 1467725 as yet unmatched pairs. 39486 records in RAM.
INFO 2026-06-08 09:15:58 MarkDuplicates Read 129,000,000 records. Elapsed time: 00:04:23s. Time for last 1,000,000: 1s. Last read position: chr2:216,694,674
INFO 2026-06-08 09:15:58 MarkDuplicates Tracking 1465785 as yet unmatched pairs. 37524 records in RAM.
INFO 2026-06-08 09:16:00 MarkDuplicates Read 130,000,000 records. Elapsed time: 00:04:25s. Time for last 1,000,000: 2s. Last read position: chr2:219,182,410
INFO 2026-06-08 09:16:00 MarkDuplicates Tracking 1457529 as yet unmatched pairs. 29256 records in RAM.
INFO 2026-06-08 09:16:02 MarkDuplicates Read 131,000,000 records. Elapsed time: 00:04:27s. Time for last 1,000,000: 1s. Last read position: chr2:226,797,041
INFO 2026-06-08 09:16:02 MarkDuplicates Tracking 1453606 as yet unmatched pairs. 25318 records in RAM.
INFO 2026-06-08 09:16:04 MarkDuplicates Read 132,000,000 records. Elapsed time: 00:04:28s. Time for last 1,000,000: 1s. Last read position: chr2:231,458,314
INFO 2026-06-08 09:16:04 MarkDuplicates Tracking 1453209 as yet unmatched pairs. 24916 records in RAM.
INFO 2026-06-08 09:16:06 MarkDuplicates Read 133,000,000 records. Elapsed time: 00:04:30s. Time for last 1,000,000: 1s. Last read position: chr2:237,334,654
INFO 2026-06-08 09:16:06 MarkDuplicates Tracking 1453742 as yet unmatched pairs. 25434 records in RAM.
INFO 2026-06-08 09:16:08 MarkDuplicates Read 134,000,000 records. Elapsed time: 00:04:32s. Time for last 1,000,000: 1s. Last read position: chr2:237,344,694
INFO 2026-06-08 09:16:08 MarkDuplicates Tracking 1447701 as yet unmatched pairs. 19389 records in RAM.
INFO 2026-06-08 09:16:10 MarkDuplicates Read 135,000,000 records. Elapsed time: 00:04:34s. Time for last 1,000,000: 1s. Last read position: chr2:237,361,759
INFO 2026-06-08 09:16:10 MarkDuplicates Tracking 1445438 as yet unmatched pairs. 17124 records in RAM.
INFO 2026-06-08 09:16:11 MarkDuplicates Read 136,000,000 records. Elapsed time: 00:04:36s. Time for last 1,000,000: 1s. Last read position: chr2:237,371,780
INFO 2026-06-08 09:16:11 MarkDuplicates Tracking 1454865 as yet unmatched pairs. 26545 records in RAM.
INFO 2026-06-08 09:16:13 MarkDuplicates Read 137,000,000 records. Elapsed time: 00:04:38s. Time for last 1,000,000: 1s. Last read position: chr2:237,377,115
INFO 2026-06-08 09:16:13 MarkDuplicates Tracking 1445994 as yet unmatched pairs. 17671 records in RAM.
INFO 2026-06-08 09:16:15 MarkDuplicates Read 138,000,000 records. Elapsed time: 00:04:39s. Time for last 1,000,000: 1s. Last read position: chr2:237,394,687
INFO 2026-06-08 09:16:15 MarkDuplicates Tracking 1444016 as yet unmatched pairs. 15685 records in RAM.
INFO 2026-06-08 09:16:17 MarkDuplicates Read 139,000,000 records. Elapsed time: 00:04:41s. Time for last 1,000,000: 2s. Last read position: chr2:241,238,755
INFO 2026-06-08 09:16:17 MarkDuplicates Tracking 1430992 as yet unmatched pairs. 2646 records in RAM.
INFO 2026-06-08 09:16:19 MarkDuplicates Read 140,000,000 records. Elapsed time: 00:04:44s. Time for last 1,000,000: 2s. Last read position: chr3:5,170,506
INFO 2026-06-08 09:16:19 MarkDuplicates Tracking 1427592 as yet unmatched pairs. 81768 records in RAM.
INFO 2026-06-08 09:16:21 MarkDuplicates Read 141,000,000 records. Elapsed time: 00:04:46s. Time for last 1,000,000: 1s. Last read position: chr3:11,564,859
INFO 2026-06-08 09:16:21 MarkDuplicates Tracking 1425846 as yet unmatched pairs. 80013 records in RAM.
INFO 2026-06-08 09:16:23 MarkDuplicates Read 142,000,000 records. Elapsed time: 00:04:47s. Time for last 1,000,000: 1s. Last read position: chr3:17,404,703
INFO 2026-06-08 09:16:23 MarkDuplicates Tracking 1421648 as yet unmatched pairs. 75801 records in RAM.
INFO 2026-06-08 09:16:26 MarkDuplicates Read 143,000,000 records. Elapsed time: 00:04:50s. Time for last 1,000,000: 2s. Last read position: chr3:33,129,955
INFO 2026-06-08 09:16:26 MarkDuplicates Tracking 1419200 as yet unmatched pairs. 73331 records in RAM.
INFO 2026-06-08 09:16:28 MarkDuplicates Read 144,000,000 records. Elapsed time: 00:04:52s. Time for last 1,000,000: 1s. Last read position: chr3:39,410,899
INFO 2026-06-08 09:16:28 MarkDuplicates Tracking 1418548 as yet unmatched pairs. 72663 records in RAM.
INFO 2026-06-08 09:16:29 MarkDuplicates Read 145,000,000 records. Elapsed time: 00:04:54s. Time for last 1,000,000: 1s. Last read position: chr3:44,643,944
INFO 2026-06-08 09:16:29 MarkDuplicates Tracking 1413066 as yet unmatched pairs. 67171 records in RAM.
INFO 2026-06-08 09:16:32 MarkDuplicates Read 146,000,000 records. Elapsed time: 00:04:56s. Time for last 1,000,000: 2s. Last read position: chr3:47,852,866
INFO 2026-06-08 09:16:32 MarkDuplicates Tracking 1411507 as yet unmatched pairs. 65611 records in RAM.
INFO 2026-06-08 09:16:34 MarkDuplicates Read 147,000,000 records. Elapsed time: 00:04:58s. Time for last 1,000,000: 2s. Last read position: chr3:49,015,311
INFO 2026-06-08 09:16:34 MarkDuplicates Tracking 1407288 as yet unmatched pairs. 61376 records in RAM.
INFO 2026-06-08 09:16:36 MarkDuplicates Read 148,000,000 records. Elapsed time: 00:05:00s. Time for last 1,000,000: 1s. Last read position: chr3:49,676,466
INFO 2026-06-08 09:16:36 MarkDuplicates Tracking 1404561 as yet unmatched pairs. 58638 records in RAM.
INFO 2026-06-08 09:16:37 MarkDuplicates Read 149,000,000 records. Elapsed time: 00:05:02s. Time for last 1,000,000: 1s. Last read position: chr3:51,420,318
INFO 2026-06-08 09:16:37 MarkDuplicates Tracking 1401121 as yet unmatched pairs. 55184 records in RAM.
INFO 2026-06-08 09:16:39 MarkDuplicates Read 150,000,000 records. Elapsed time: 00:05:04s. Time for last 1,000,000: 1s. Last read position: chr3:52,520,032
INFO 2026-06-08 09:16:39 MarkDuplicates Tracking 1398321 as yet unmatched pairs. 52376 records in RAM.
INFO 2026-06-08 09:16:41 MarkDuplicates Read 151,000,000 records. Elapsed time: 00:05:06s. Time for last 1,000,000: 1s. Last read position: chr3:57,916,949
INFO 2026-06-08 09:16:41 MarkDuplicates Tracking 1395314 as yet unmatched pairs. 49353 records in RAM.
INFO 2026-06-08 09:16:43 MarkDuplicates Read 152,000,000 records. Elapsed time: 00:05:08s. Time for last 1,000,000: 1s. Last read position: chr3:69,048,267
INFO 2026-06-08 09:16:43 MarkDuplicates Tracking 1392675 as yet unmatched pairs. 46700 records in RAM.
INFO 2026-06-08 09:16:45 MarkDuplicates Read 153,000,000 records. Elapsed time: 00:05:09s. Time for last 1,000,000: 1s. Last read position: chr3:93,927,333
INFO 2026-06-08 09:16:45 MarkDuplicates Tracking 1389707 as yet unmatched pairs. 43708 records in RAM.
INFO 2026-06-08 09:16:47 MarkDuplicates Read 154,000,000 records. Elapsed time: 00:05:11s. Time for last 1,000,000: 2s. Last read position: chr3:100,736,573
INFO 2026-06-08 09:16:47 MarkDuplicates Tracking 1388483 as yet unmatched pairs. 42457 records in RAM.
INFO 2026-06-08 09:16:48 MarkDuplicates Read 155,000,000 records. Elapsed time: 00:05:13s. Time for last 1,000,000: 1s. Last read position: chr3:111,133,675
INFO 2026-06-08 09:16:48 MarkDuplicates Tracking 1386275 as yet unmatched pairs. 40242 records in RAM.
INFO 2026-06-08 09:16:50 MarkDuplicates Read 156,000,000 records. Elapsed time: 00:05:15s. Time for last 1,000,000: 1s. Last read position: chr3:120,396,981
INFO 2026-06-08 09:16:50 MarkDuplicates Tracking 1384195 as yet unmatched pairs. 38141 records in RAM.
INFO 2026-06-08 09:16:52 MarkDuplicates Read 157,000,000 records. Elapsed time: 00:05:16s. Time for last 1,000,000: 1s. Last read position: chr3:124,347,247
INFO 2026-06-08 09:16:52 MarkDuplicates Tracking 1379068 as yet unmatched pairs. 33008 records in RAM.
INFO 2026-06-08 09:16:54 MarkDuplicates Read 158,000,000 records. Elapsed time: 00:05:18s. Time for last 1,000,000: 1s. Last read position: chr3:127,676,302
INFO 2026-06-08 09:16:54 MarkDuplicates Tracking 1375718 as yet unmatched pairs. 29655 records in RAM.
INFO 2026-06-08 09:16:56 MarkDuplicates Read 159,000,000 records. Elapsed time: 00:05:20s. Time for last 1,000,000: 1s. Last read position: chr3:129,519,169
INFO 2026-06-08 09:16:56 MarkDuplicates Tracking 1373221 as yet unmatched pairs. 27144 records in RAM.
INFO 2026-06-08 09:16:57 MarkDuplicates Read 160,000,000 records. Elapsed time: 00:05:22s. Time for last 1,000,000: 1s. Last read position: chr3:132,721,996
INFO 2026-06-08 09:16:57 MarkDuplicates Tracking 1369860 as yet unmatched pairs. 23762 records in RAM.
INFO 2026-06-08 09:16:59 MarkDuplicates Read 161,000,000 records. Elapsed time: 00:05:24s. Time for last 1,000,000: 1s. Last read position: chr3:142,421,512
INFO 2026-06-08 09:16:59 MarkDuplicates Tracking 1366956 as yet unmatched pairs. 20830 records in RAM.
INFO 2026-06-08 09:17:01 MarkDuplicates Read 162,000,000 records. Elapsed time: 00:05:26s. Time for last 1,000,000: 2s. Last read position: chr3:150,409,779
INFO 2026-06-08 09:17:01 MarkDuplicates Tracking 1363988 as yet unmatched pairs. 17847 records in RAM.
INFO 2026-06-08 09:17:03 MarkDuplicates Read 163,000,000 records. Elapsed time: 00:05:27s. Time for last 1,000,000: 1s. Last read position: chr3:160,356,088
INFO 2026-06-08 09:17:03 MarkDuplicates Tracking 1360545 as yet unmatched pairs. 14394 records in RAM.
INFO 2026-06-08 09:17:04 MarkDuplicates Read 164,000,000 records. Elapsed time: 00:05:29s. Time for last 1,000,000: 1s. Last read position: chr3:172,341,122
INFO 2026-06-08 09:17:04 MarkDuplicates Tracking 1358501 as yet unmatched pairs. 12320 records in RAM.
INFO 2026-06-08 09:17:06 MarkDuplicates Read 165,000,000 records. Elapsed time: 00:05:31s. Time for last 1,000,000: 1s. Last read position: chr3:183,951,453
INFO 2026-06-08 09:17:06 MarkDuplicates Tracking 1355201 as yet unmatched pairs. 8984 records in RAM.
INFO 2026-06-08 09:17:08 MarkDuplicates Read 166,000,000 records. Elapsed time: 00:05:33s. Time for last 1,000,000: 2s. Last read position: chr3:184,834,634
INFO 2026-06-08 09:17:08 MarkDuplicates Tracking 1352691 as yet unmatched pairs. 6464 records in RAM.
INFO 2026-06-08 09:17:10 MarkDuplicates Read 167,000,000 records. Elapsed time: 00:05:35s. Time for last 1,000,000: 1s. Last read position: chr3:193,645,750
INFO 2026-06-08 09:17:10 MarkDuplicates Tracking 1349921 as yet unmatched pairs. 3665 records in RAM.
INFO 2026-06-08 09:17:12 MarkDuplicates Read 168,000,000 records. Elapsed time: 00:05:37s. Time for last 1,000,000: 1s. Last read position: chr3:197,756,537
INFO 2026-06-08 09:17:12 MarkDuplicates Tracking 1347713 as yet unmatched pairs. 1425 records in RAM.
INFO 2026-06-08 09:17:15 MarkDuplicates Read 169,000,000 records. Elapsed time: 00:05:39s. Time for last 1,000,000: 2s. Last read position: chr4:2,820,704
INFO 2026-06-08 09:17:15 MarkDuplicates Tracking 1343851 as yet unmatched pairs. 36174 records in RAM.
INFO 2026-06-08 09:17:17 MarkDuplicates Read 170,000,000 records. Elapsed time: 00:05:41s. Time for last 1,000,000: 2s. Last read position: chr4:13,600,065
INFO 2026-06-08 09:17:17 MarkDuplicates Tracking 1340600 as yet unmatched pairs. 32913 records in RAM.
INFO 2026-06-08 09:17:19 MarkDuplicates Read 171,000,000 records. Elapsed time: 00:05:44s. Time for last 1,000,000: 2s. Last read position: chr4:38,878,321
INFO 2026-06-08 09:17:19 MarkDuplicates Tracking 1337810 as yet unmatched pairs. 30097 records in RAM.
INFO 2026-06-08 09:17:21 MarkDuplicates Read 172,000,000 records. Elapsed time: 00:05:46s. Time for last 1,000,000: 1s. Last read position: chr4:54,270,714
INFO 2026-06-08 09:17:21 MarkDuplicates Tracking 1336615 as yet unmatched pairs. 28885 records in RAM.
INFO 2026-06-08 09:17:23 MarkDuplicates Read 173,000,000 records. Elapsed time: 00:05:47s. Time for last 1,000,000: 1s. Last read position: chr4:70,688,745
INFO 2026-06-08 09:17:23 MarkDuplicates Tracking 1332015 as yet unmatched pairs. 24258 records in RAM.
INFO 2026-06-08 09:17:25 MarkDuplicates Read 174,000,000 records. Elapsed time: 00:05:50s. Time for last 1,000,000: 2s. Last read position: chr4:82,357,373
INFO 2026-06-08 09:17:25 MarkDuplicates Tracking 1330017 as yet unmatched pairs. 22246 records in RAM.
INFO 2026-06-08 09:17:27 MarkDuplicates Read 175,000,000 records. Elapsed time: 00:05:51s. Time for last 1,000,000: 1s. Last read position: chr4:87,981,478
INFO 2026-06-08 09:17:27 MarkDuplicates Tracking 1331580 as yet unmatched pairs. 23794 records in RAM.
INFO 2026-06-08 09:17:29 MarkDuplicates Read 176,000,000 records. Elapsed time: 00:05:53s. Time for last 1,000,000: 1s. Last read position: chr4:102,809,456
INFO 2026-06-08 09:17:29 MarkDuplicates Tracking 1324957 as yet unmatched pairs. 17150 records in RAM.
INFO 2026-06-08 09:17:30 MarkDuplicates Read 177,000,000 records. Elapsed time: 00:05:55s. Time for last 1,000,000: 1s. Last read position: chr4:118,514,155
INFO 2026-06-08 09:17:30 MarkDuplicates Tracking 1321387 as yet unmatched pairs. 13574 records in RAM.
INFO 2026-06-08 09:17:32 MarkDuplicates Read 178,000,000 records. Elapsed time: 00:05:57s. Time for last 1,000,000: 1s. Last read position: chr4:125,479,800
INFO 2026-06-08 09:17:32 MarkDuplicates Tracking 1318812 as yet unmatched pairs. 10987 records in RAM.
INFO 2026-06-08 09:17:34 MarkDuplicates Read 179,000,000 records. Elapsed time: 00:05:59s. Time for last 1,000,000: 2s. Last read position: chr4:145,902,229
INFO 2026-06-08 09:17:34 MarkDuplicates Tracking 1316034 as yet unmatched pairs. 8205 records in RAM.
INFO 2026-06-08 09:17:36 MarkDuplicates Read 180,000,000 records. Elapsed time: 00:06:01s. Time for last 1,000,000: 1s. Last read position: chr4:168,285,393
INFO 2026-06-08 09:17:36 MarkDuplicates Tracking 1313186 as yet unmatched pairs. 5342 records in RAM.
INFO 2026-06-08 09:17:38 MarkDuplicates Read 181,000,000 records. Elapsed time: 00:06:02s. Time for last 1,000,000: 1s. Last read position: chr4:186,603,014
INFO 2026-06-08 09:17:38 MarkDuplicates Tracking 1311261 as yet unmatched pairs. 3397 records in RAM.
INFO 2026-06-08 09:17:41 MarkDuplicates Read 182,000,000 records. Elapsed time: 00:06:05s. Time for last 1,000,000: 2s. Last read position: chr5:462,209
INFO 2026-06-08 09:17:41 MarkDuplicates Tracking 1307626 as yet unmatched pairs. 82550 records in RAM.
INFO 2026-06-08 09:17:42 MarkDuplicates Read 183,000,000 records. Elapsed time: 00:06:07s. Time for last 1,000,000: 1s. Last read position: chr5:14,293,120
INFO 2026-06-08 09:17:42 MarkDuplicates Tracking 1306121 as yet unmatched pairs. 81041 records in RAM.
INFO 2026-06-08 09:17:44 MarkDuplicates Read 184,000,000 records. Elapsed time: 00:06:09s. Time for last 1,000,000: 1s. Last read position: chr5:14,502,641
INFO 2026-06-08 09:17:44 MarkDuplicates Tracking 1303719 as yet unmatched pairs. 78639 records in RAM.
INFO 2026-06-08 09:17:47 MarkDuplicates Read 185,000,000 records. Elapsed time: 00:06:12s. Time for last 1,000,000: 2s. Last read position: chr5:33,637,735
INFO 2026-06-08 09:17:47 MarkDuplicates Tracking 1298392 as yet unmatched pairs. 73282 records in RAM.
INFO 2026-06-08 09:17:49 MarkDuplicates Read 186,000,000 records. Elapsed time: 00:06:13s. Time for last 1,000,000: 1s. Last read position: chr5:42,800,748
INFO 2026-06-08 09:17:49 MarkDuplicates Tracking 1296058 as yet unmatched pairs. 70936 records in RAM.
INFO 2026-06-08 09:17:51 MarkDuplicates Read 187,000,000 records. Elapsed time: 00:06:16s. Time for last 1,000,000: 2s. Last read position: chr5:55,916,762
INFO 2026-06-08 09:17:51 MarkDuplicates Tracking 1293305 as yet unmatched pairs. 68167 records in RAM.
INFO 2026-06-08 09:17:53 MarkDuplicates Read 188,000,000 records. Elapsed time: 00:06:18s. Time for last 1,000,000: 2s. Last read position: chr5:67,130,239
INFO 2026-06-08 09:17:53 MarkDuplicates Tracking 1290391 as yet unmatched pairs. 65227 records in RAM.
INFO 2026-06-08 09:17:55 MarkDuplicates Read 189,000,000 records. Elapsed time: 00:06:19s. Time for last 1,000,000: 1s. Last read position: chr5:73,503,096
INFO 2026-06-08 09:17:55 MarkDuplicates Tracking 1290174 as yet unmatched pairs. 64999 records in RAM.
INFO 2026-06-08 09:17:57 MarkDuplicates Read 190,000,000 records. Elapsed time: 00:06:21s. Time for last 1,000,000: 1s. Last read position: chr5:80,076,855
INFO 2026-06-08 09:17:57 MarkDuplicates Tracking 1289353 as yet unmatched pairs. 64176 records in RAM.
INFO 2026-06-08 09:17:59 MarkDuplicates Read 191,000,000 records. Elapsed time: 00:06:23s. Time for last 1,000,000: 1s. Last read position: chr5:83,537,486
INFO 2026-06-08 09:17:59 MarkDuplicates Tracking 1284296 as yet unmatched pairs. 59110 records in RAM.
INFO 2026-06-08 09:18:00 MarkDuplicates Read 192,000,000 records. Elapsed time: 00:06:25s. Time for last 1,000,000: 1s. Last read position: chr5:93,683,161
INFO 2026-06-08 09:18:00 MarkDuplicates Tracking 1280719 as yet unmatched pairs. 55524 records in RAM.
INFO 2026-06-08 09:18:02 MarkDuplicates Read 193,000,000 records. Elapsed time: 00:06:27s. Time for last 1,000,000: 1s. Last read position: chr5:110,761,711
INFO 2026-06-08 09:18:02 MarkDuplicates Tracking 1277893 as yet unmatched pairs. 52677 records in RAM.
INFO 2026-06-08 09:18:04 MarkDuplicates Read 194,000,000 records. Elapsed time: 00:06:29s. Time for last 1,000,000: 1s. Last read position: chr5:128,357,310
INFO 2026-06-08 09:18:04 MarkDuplicates Tracking 1275142 as yet unmatched pairs. 49921 records in RAM.
INFO 2026-06-08 09:18:06 MarkDuplicates Read 195,000,000 records. Elapsed time: 00:06:30s. Time for last 1,000,000: 1s. Last read position: chr5:136,046,367
INFO 2026-06-08 09:18:06 MarkDuplicates Tracking 1274087 as yet unmatched pairs. 48854 records in RAM.
INFO 2026-06-08 09:18:07 MarkDuplicates Read 196,000,000 records. Elapsed time: 00:06:32s. Time for last 1,000,000: 1s. Last read position: chr5:138,467,516
INFO 2026-06-08 09:18:07 MarkDuplicates Tracking 1272612 as yet unmatched pairs. 47370 records in RAM.
INFO 2026-06-08 09:18:09 MarkDuplicates Read 197,000,000 records. Elapsed time: 00:06:34s. Time for last 1,000,000: 1s. Last read position: chr5:140,567,499
INFO 2026-06-08 09:18:09 MarkDuplicates Tracking 1266266 as yet unmatched pairs. 41014 records in RAM.
INFO 2026-06-08 09:18:11 MarkDuplicates Read 198,000,000 records. Elapsed time: 00:06:36s. Time for last 1,000,000: 1s. Last read position: chr5:142,314,091
INFO 2026-06-08 09:18:11 MarkDuplicates Tracking 1268119 as yet unmatched pairs. 42857 records in RAM.
INFO 2026-06-08 09:18:13 MarkDuplicates Read 199,000,000 records. Elapsed time: 00:06:37s. Time for last 1,000,000: 1s. Last read position: chr5:148,402,035
INFO 2026-06-08 09:18:13 MarkDuplicates Tracking 1260759 as yet unmatched pairs. 35485 records in RAM.
INFO 2026-06-08 09:18:15 MarkDuplicates Read 200,000,000 records. Elapsed time: 00:06:39s. Time for last 1,000,000: 1s. Last read position: chr5:150,117,733
INFO 2026-06-08 09:18:15 MarkDuplicates Tracking 1269754 as yet unmatched pairs. 44468 records in RAM.
INFO 2026-06-08 09:18:17 MarkDuplicates Read 201,000,000 records. Elapsed time: 00:06:41s. Time for last 1,000,000: 2s. Last read position: chr5:150,124,340
INFO 2026-06-08 09:18:17 MarkDuplicates Tracking 1265482 as yet unmatched pairs. 40196 records in RAM.
INFO 2026-06-08 09:18:18 MarkDuplicates Read 202,000,000 records. Elapsed time: 00:06:43s. Time for last 1,000,000: 1s. Last read position: chr5:150,133,943
INFO 2026-06-08 09:18:18 MarkDuplicates Tracking 1262762 as yet unmatched pairs. 37475 records in RAM.
INFO 2026-06-08 09:18:21 MarkDuplicates Read 203,000,000 records. Elapsed time: 00:06:45s. Time for last 1,000,000: 2s. Last read position: chr5:150,402,569
INFO 2026-06-08 09:18:21 MarkDuplicates Tracking 1265862 as yet unmatched pairs. 40559 records in RAM.
INFO 2026-06-08 09:18:23 MarkDuplicates Read 204,000,000 records. Elapsed time: 00:06:48s. Time for last 1,000,000: 2s. Last read position: chr5:150,795,461
INFO 2026-06-08 09:18:23 MarkDuplicates Tracking 1246613 as yet unmatched pairs. 21306 records in RAM.
INFO 2026-06-08 09:18:25 MarkDuplicates Read 205,000,000 records. Elapsed time: 00:06:49s. Time for last 1,000,000: 1s. Last read position: chr5:154,053,628
INFO 2026-06-08 09:18:25 MarkDuplicates Tracking 1242477 as yet unmatched pairs. 17167 records in RAM.
INFO 2026-06-08 09:18:27 MarkDuplicates Read 206,000,000 records. Elapsed time: 00:06:52s. Time for last 1,000,000: 2s. Last read position: chr5:169,591,046
INFO 2026-06-08 09:18:27 MarkDuplicates Tracking 1239456 as yet unmatched pairs. 14138 records in RAM.
INFO 2026-06-08 09:18:29 MarkDuplicates Read 207,000,000 records. Elapsed time: 00:06:53s. Time for last 1,000,000: 1s. Last read position: chr5:171,407,752
INFO 2026-06-08 09:18:29 MarkDuplicates Tracking 1253422 as yet unmatched pairs. 28099 records in RAM.
INFO 2026-06-08 09:18:31 MarkDuplicates Read 208,000,000 records. Elapsed time: 00:06:55s. Time for last 1,000,000: 2s. Last read position: chr5:177,351,460
INFO 2026-06-08 09:18:31 MarkDuplicates Tracking 1234019 as yet unmatched pairs. 8685 records in RAM.
INFO 2026-06-08 09:18:32 MarkDuplicates Read 209,000,000 records. Elapsed time: 00:06:57s. Time for last 1,000,000: 1s. Last read position: chr5:179,719,672
INFO 2026-06-08 09:18:32 MarkDuplicates Tracking 1232111 as yet unmatched pairs. 6770 records in RAM.
INFO 2026-06-08 09:18:34 MarkDuplicates Read 210,000,000 records. Elapsed time: 00:06:59s. Time for last 1,000,000: 1s. Last read position: chr5:179,833,073
INFO 2026-06-08 09:18:34 MarkDuplicates Tracking 1232747 as yet unmatched pairs. 7394 records in RAM.
INFO 2026-06-08 09:18:37 MarkDuplicates Read 211,000,000 records. Elapsed time: 00:07:01s. Time for last 1,000,000: 2s. Last read position: chr6:2,836,001
INFO 2026-06-08 09:18:37 MarkDuplicates Tracking 1224992 as yet unmatched pairs. 81813 records in RAM.
INFO 2026-06-08 09:18:39 MarkDuplicates Read 212,000,000 records. Elapsed time: 00:07:03s. Time for last 1,000,000: 1s. Last read position: chr6:11,190,909
INFO 2026-06-08 09:18:39 MarkDuplicates Tracking 1222080 as yet unmatched pairs. 78885 records in RAM.
INFO 2026-06-08 09:18:40 MarkDuplicates Read 213,000,000 records. Elapsed time: 00:07:05s. Time for last 1,000,000: 1s. Last read position: chr6:25,983,359
INFO 2026-06-08 09:18:40 MarkDuplicates Tracking 1219518 as yet unmatched pairs. 76302 records in RAM.
INFO 2026-06-08 09:18:42 MarkDuplicates Read 214,000,000 records. Elapsed time: 00:07:07s. Time for last 1,000,000: 1s. Last read position: chr6:26,285,219
INFO 2026-06-08 09:18:42 MarkDuplicates Tracking 1217444 as yet unmatched pairs. 74214 records in RAM.
INFO 2026-06-08 09:18:44 MarkDuplicates Read 215,000,000 records. Elapsed time: 00:07:09s. Time for last 1,000,000: 2s. Last read position: chr6:27,892,771
INFO 2026-06-08 09:18:44 MarkDuplicates Tracking 1214468 as yet unmatched pairs. 71213 records in RAM.
INFO 2026-06-08 09:18:46 MarkDuplicates Read 216,000,000 records. Elapsed time: 00:07:10s. Time for last 1,000,000: 1s. Last read position: chr6:30,491,226
INFO 2026-06-08 09:18:46 MarkDuplicates Tracking 1212006 as yet unmatched pairs. 68734 records in RAM.
INFO 2026-06-08 09:18:47 MarkDuplicates Read 217,000,000 records. Elapsed time: 00:07:12s. Time for last 1,000,000: 1s. Last read position: chr6:31,271,071
INFO 2026-06-08 09:18:47 MarkDuplicates Tracking 1210071 as yet unmatched pairs. 66799 records in RAM.
INFO 2026-06-08 09:18:49 MarkDuplicates Read 218,000,000 records. Elapsed time: 00:07:14s. Time for last 1,000,000: 1s. Last read position: chr6:31,639,505
INFO 2026-06-08 09:18:49 MarkDuplicates Tracking 1207233 as yet unmatched pairs. 63958 records in RAM.
INFO 2026-06-08 09:18:51 MarkDuplicates Read 219,000,000 records. Elapsed time: 00:07:15s. Time for last 1,000,000: 1s. Last read position: chr6:31,816,377
INFO 2026-06-08 09:18:51 MarkDuplicates Tracking 1203252 as yet unmatched pairs. 59977 records in RAM.
INFO 2026-06-08 09:18:52 MarkDuplicates Read 220,000,000 records. Elapsed time: 00:07:17s. Time for last 1,000,000: 1s. Last read position: chr6:31,828,820
INFO 2026-06-08 09:18:52 MarkDuplicates Tracking 1207790 as yet unmatched pairs. 64513 records in RAM.
INFO 2026-06-08 09:18:54 MarkDuplicates Read 221,000,000 records. Elapsed time: 00:07:19s. Time for last 1,000,000: 1s. Last read position: chr6:32,116,485
INFO 2026-06-08 09:18:54 MarkDuplicates Tracking 1199491 as yet unmatched pairs. 56214 records in RAM.
INFO 2026-06-08 09:18:56 MarkDuplicates Read 222,000,000 records. Elapsed time: 00:07:21s. Time for last 1,000,000: 2s. Last read position: chr6:33,080,826
INFO 2026-06-08 09:18:56 MarkDuplicates Tracking 1196504 as yet unmatched pairs. 53221 records in RAM.
INFO 2026-06-08 09:18:58 MarkDuplicates Read 223,000,000 records. Elapsed time: 00:07:23s. Time for last 1,000,000: 2s. Last read position: chr6:34,246,622
INFO 2026-06-08 09:18:58 MarkDuplicates Tracking 1193205 as yet unmatched pairs. 49899 records in RAM.
INFO 2026-06-08 09:19:00 MarkDuplicates Read 224,000,000 records. Elapsed time: 00:07:25s. Time for last 1,000,000: 1s. Last read position: chr6:41,084,145
INFO 2026-06-08 09:19:00 MarkDuplicates Tracking 1191101 as yet unmatched pairs. 47777 records in RAM.
INFO 2026-06-08 09:19:02 MarkDuplicates Read 225,000,000 records. Elapsed time: 00:07:27s. Time for last 1,000,000: 1s. Last read position: chr6:43,025,064
INFO 2026-06-08 09:19:02 MarkDuplicates Tracking 1186996 as yet unmatched pairs. 43649 records in RAM.
INFO 2026-06-08 09:19:04 MarkDuplicates Read 226,000,000 records. Elapsed time: 00:07:28s. Time for last 1,000,000: 1s. Last read position: chr6:43,778,413
INFO 2026-06-08 09:19:04 MarkDuplicates Tracking 1186031 as yet unmatched pairs. 42651 records in RAM.
INFO 2026-06-08 09:19:06 MarkDuplicates Read 227,000,000 records. Elapsed time: 00:07:30s. Time for last 1,000,000: 1s. Last read position: chr6:52,506,040
INFO 2026-06-08 09:19:06 MarkDuplicates Tracking 1181012 as yet unmatched pairs. 37621 records in RAM.
INFO 2026-06-08 09:19:07 MarkDuplicates Read 228,000,000 records. Elapsed time: 00:07:32s. Time for last 1,000,000: 1s. Last read position: chr6:71,288,946
INFO 2026-06-08 09:19:07 MarkDuplicates Tracking 1178083 as yet unmatched pairs. 34677 records in RAM.
INFO 2026-06-08 09:19:09 MarkDuplicates Read 229,000,000 records. Elapsed time: 00:07:34s. Time for last 1,000,000: 1s. Last read position: chr6:75,183,431
INFO 2026-06-08 09:19:09 MarkDuplicates Tracking 1178994 as yet unmatched pairs. 35575 records in RAM.
INFO 2026-06-08 09:19:11 MarkDuplicates Read 230,000,000 records. Elapsed time: 00:07:36s. Time for last 1,000,000: 1s. Last read position: chr6:85,572,187
INFO 2026-06-08 09:19:11 MarkDuplicates Tracking 1172903 as yet unmatched pairs. 29467 records in RAM.
INFO 2026-06-08 09:19:13 MarkDuplicates Read 231,000,000 records. Elapsed time: 00:07:37s. Time for last 1,000,000: 1s. Last read position: chr6:96,536,297
INFO 2026-06-08 09:19:13 MarkDuplicates Tracking 1169663 as yet unmatched pairs. 26213 records in RAM.
INFO 2026-06-08 09:19:15 MarkDuplicates Read 232,000,000 records. Elapsed time: 00:07:39s. Time for last 1,000,000: 1s. Last read position: chr6:111,025,402
INFO 2026-06-08 09:19:15 MarkDuplicates Tracking 1166895 as yet unmatched pairs. 23434 records in RAM.
INFO 2026-06-08 09:19:16 MarkDuplicates Read 233,000,000 records. Elapsed time: 00:07:41s. Time for last 1,000,000: 1s. Last read position: chr6:117,575,352
INFO 2026-06-08 09:19:16 MarkDuplicates Tracking 1164249 as yet unmatched pairs. 20778 records in RAM.
INFO 2026-06-08 09:19:18 MarkDuplicates Read 234,000,000 records. Elapsed time: 00:07:43s. Time for last 1,000,000: 1s. Last read position: chr6:130,956,094
INFO 2026-06-08 09:19:18 MarkDuplicates Tracking 1161279 as yet unmatched pairs. 17796 records in RAM.
INFO 2026-06-08 09:19:20 MarkDuplicates Read 235,000,000 records. Elapsed time: 00:07:44s. Time for last 1,000,000: 1s. Last read position: chr6:137,878,593
INFO 2026-06-08 09:19:20 MarkDuplicates Tracking 1158037 as yet unmatched pairs. 14550 records in RAM.
INFO 2026-06-08 09:19:22 MarkDuplicates Read 236,000,000 records. Elapsed time: 00:07:46s. Time for last 1,000,000: 1s. Last read position: chr6:144,548,840
INFO 2026-06-08 09:19:22 MarkDuplicates Tracking 1155813 as yet unmatched pairs. 12317 records in RAM.
INFO 2026-06-08 09:19:24 MarkDuplicates Read 237,000,000 records. Elapsed time: 00:07:49s. Time for last 1,000,000: 2s. Last read position: chr6:152,234,676
INFO 2026-06-08 09:19:24 MarkDuplicates Tracking 1152391 as yet unmatched pairs. 8884 records in RAM.
INFO 2026-06-08 09:19:27 MarkDuplicates Read 238,000,000 records. Elapsed time: 00:07:51s. Time for last 1,000,000: 2s. Last read position: chr6:159,743,717
INFO 2026-06-08 09:19:27 MarkDuplicates Tracking 1149664 as yet unmatched pairs. 6143 records in RAM.
INFO 2026-06-08 09:19:28 MarkDuplicates Read 239,000,000 records. Elapsed time: 00:07:53s. Time for last 1,000,000: 1s. Last read position: chr6:163,563,508
INFO 2026-06-08 09:19:28 MarkDuplicates Tracking 1150295 as yet unmatched pairs. 6768 records in RAM.
INFO 2026-06-08 09:19:31 MarkDuplicates Read 240,000,000 records. Elapsed time: 00:07:56s. Time for last 1,000,000: 2s. Last read position: chr7:20,874
INFO 2026-06-08 09:19:31 MarkDuplicates Tracking 1143613 as yet unmatched pairs. 94291 records in RAM.
INFO 2026-06-08 09:19:33 MarkDuplicates Read 241,000,000 records. Elapsed time: 00:07:57s. Time for last 1,000,000: 1s. Last read position: chr7:1,493,793
INFO 2026-06-08 09:19:33 MarkDuplicates Tracking 1140000 as yet unmatched pairs. 90675 records in RAM.
INFO 2026-06-08 09:19:35 MarkDuplicates Read 242,000,000 records. Elapsed time: 00:07:59s. Time for last 1,000,000: 1s. Last read position: chr7:5,190,359
INFO 2026-06-08 09:19:35 MarkDuplicates Tracking 1135802 as yet unmatched pairs. 86456 records in RAM.
INFO 2026-06-08 09:19:37 MarkDuplicates Read 243,000,000 records. Elapsed time: 00:08:02s. Time for last 1,000,000: 2s. Last read position: chr7:5,502,022
INFO 2026-06-08 09:19:37 MarkDuplicates Tracking 1131744 as yet unmatched pairs. 82390 records in RAM.
INFO 2026-06-08 09:19:39 MarkDuplicates Read 244,000,000 records. Elapsed time: 00:08:03s. Time for last 1,000,000: 1s. Last read position: chr7:5,528,705
INFO 2026-06-08 09:19:39 MarkDuplicates Tracking 1137495 as yet unmatched pairs. 88127 records in RAM.
INFO 2026-06-08 09:19:41 MarkDuplicates Read 245,000,000 records. Elapsed time: 00:08:05s. Time for last 1,000,000: 1s. Last read position: chr7:6,400,139
INFO 2026-06-08 09:19:41 MarkDuplicates Tracking 1127339 as yet unmatched pairs. 77957 records in RAM.
INFO 2026-06-08 09:20:39 MarkDuplicates Read 246,000,000 records. Elapsed time: 00:09:04s. Time for last 1,000,000: 58s. Last read position: chr7:13,935,824
INFO 2026-06-08 09:20:39 MarkDuplicates Tracking 1126443 as yet unmatched pairs. 77053 records in RAM.
INFO 2026-06-08 09:20:41 MarkDuplicates Read 247,000,000 records. Elapsed time: 00:09:06s. Time for last 1,000,000: 2s. Last read position: chr7:26,192,181
INFO 2026-06-08 09:20:41 MarkDuplicates Tracking 1120885 as yet unmatched pairs. 71462 records in RAM.
INFO 2026-06-08 09:20:43 MarkDuplicates Read 248,000,000 records. Elapsed time: 00:09:08s. Time for last 1,000,000: 1s. Last read position: chr7:29,398,469
INFO 2026-06-08 09:20:43 MarkDuplicates Tracking 1116837 as yet unmatched pairs. 67398 records in RAM.
INFO 2026-06-08 09:20:45 MarkDuplicates Read 249,000,000 records. Elapsed time: 00:09:10s. Time for last 1,000,000: 1s. Last read position: chr7:37,907,542
INFO 2026-06-08 09:20:45 MarkDuplicates Tracking 1114346 as yet unmatched pairs. 64895 records in RAM.
INFO 2026-06-08 09:20:47 MarkDuplicates Read 250,000,000 records. Elapsed time: 00:09:11s. Time for last 1,000,000: 1s. Last read position: chr7:44,003,787
INFO 2026-06-08 09:20:47 MarkDuplicates Tracking 1110964 as yet unmatched pairs. 61499 records in RAM.
INFO 2026-06-08 09:20:49 MarkDuplicates Read 251,000,000 records. Elapsed time: 00:09:13s. Time for last 1,000,000: 1s. Last read position: chr7:44,799,815
INFO 2026-06-08 09:20:49 MarkDuplicates Tracking 1112229 as yet unmatched pairs. 62764 records in RAM.
INFO 2026-06-08 09:20:50 MarkDuplicates Read 252,000,000 records. Elapsed time: 00:09:15s. Time for last 1,000,000: 1s. Last read position: chr7:50,382,589
INFO 2026-06-08 09:20:50 MarkDuplicates Tracking 1103759 as yet unmatched pairs. 54256 records in RAM.
INFO 2026-06-08 09:20:52 MarkDuplicates Read 253,000,000 records. Elapsed time: 00:09:17s. Time for last 1,000,000: 1s. Last read position: chr7:56,079,749
INFO 2026-06-08 09:20:52 MarkDuplicates Tracking 1101999 as yet unmatched pairs. 52486 records in RAM.
INFO 2026-06-08 09:20:54 MarkDuplicates Read 254,000,000 records. Elapsed time: 00:09:18s. Time for last 1,000,000: 1s. Last read position: chr7:73,478,233
INFO 2026-06-08 09:20:54 MarkDuplicates Tracking 1099252 as yet unmatched pairs. 49714 records in RAM.
INFO 2026-06-08 09:20:55 MarkDuplicates Read 255,000,000 records. Elapsed time: 00:09:20s. Time for last 1,000,000: 1s. Last read position: chr7:75,548,943
INFO 2026-06-08 09:20:55 MarkDuplicates Tracking 1096630 as yet unmatched pairs. 47084 records in RAM.
INFO 2026-06-08 09:20:57 MarkDuplicates Read 256,000,000 records. Elapsed time: 00:09:22s. Time for last 1,000,000: 1s. Last read position: chr7:81,757,259
INFO 2026-06-08 09:20:57 MarkDuplicates Tracking 1094092 as yet unmatched pairs. 44532 records in RAM.
INFO 2026-06-08 09:20:59 MarkDuplicates Read 257,000,000 records. Elapsed time: 00:09:24s. Time for last 1,000,000: 2s. Last read position: chr7:93,103,843
INFO 2026-06-08 09:20:59 MarkDuplicates Tracking 1090903 as yet unmatched pairs. 41328 records in RAM.
INFO 2026-06-08 09:21:01 MarkDuplicates Read 258,000,000 records. Elapsed time: 00:09:26s. Time for last 1,000,000: 1s. Last read position: chr7:94,408,813
INFO 2026-06-08 09:21:01 MarkDuplicates Tracking 1096834 as yet unmatched pairs. 47251 records in RAM.
INFO 2026-06-08 09:21:03 MarkDuplicates Read 259,000,000 records. Elapsed time: 00:09:27s. Time for last 1,000,000: 1s. Last read position: chr7:94,420,257
INFO 2026-06-08 09:21:03 MarkDuplicates Tracking 1089329 as yet unmatched pairs. 39742 records in RAM.
INFO 2026-06-08 09:21:05 MarkDuplicates Read 260,000,000 records. Elapsed time: 00:09:29s. Time for last 1,000,000: 1s. Last read position: chr7:94,430,264
INFO 2026-06-08 09:21:05 MarkDuplicates Tracking 1087656 as yet unmatched pairs. 38067 records in RAM.
INFO 2026-06-08 09:21:07 MarkDuplicates Read 261,000,000 records. Elapsed time: 00:09:32s. Time for last 1,000,000: 2s. Last read position: chr7:99,348,934
INFO 2026-06-08 09:21:07 MarkDuplicates Tracking 1078943 as yet unmatched pairs. 29350 records in RAM.
INFO 2026-06-08 09:21:10 MarkDuplicates Read 262,000,000 records. Elapsed time: 00:09:34s. Time for last 1,000,000: 2s. Last read position: chr7:100,605,158
INFO 2026-06-08 09:21:10 MarkDuplicates Tracking 1077328 as yet unmatched pairs. 27735 records in RAM.
INFO 2026-06-08 09:21:12 MarkDuplicates Read 263,000,000 records. Elapsed time: 00:09:36s. Time for last 1,000,000: 1s. Last read position: chr7:102,351,985
INFO 2026-06-08 09:21:12 MarkDuplicates Tracking 1072338 as yet unmatched pairs. 22738 records in RAM.
INFO 2026-06-08 09:21:13 MarkDuplicates Read 264,000,000 records. Elapsed time: 00:09:38s. Time for last 1,000,000: 1s. Last read position: chr7:103,119,885
INFO 2026-06-08 09:21:13 MarkDuplicates Tracking 1071015 as yet unmatched pairs. 21415 records in RAM.
INFO 2026-06-08 09:21:15 MarkDuplicates Read 265,000,000 records. Elapsed time: 00:09:40s. Time for last 1,000,000: 1s. Last read position: chr7:107,952,185
INFO 2026-06-08 09:21:15 MarkDuplicates Tracking 1070319 as yet unmatched pairs. 20708 records in RAM.
INFO 2026-06-08 09:21:17 MarkDuplicates Read 266,000,000 records. Elapsed time: 00:09:41s. Time for last 1,000,000: 1s. Last read position: chr7:127,652,288
INFO 2026-06-08 09:21:17 MarkDuplicates Tracking 1066996 as yet unmatched pairs. 17374 records in RAM.
INFO 2026-06-08 09:21:19 MarkDuplicates Read 267,000,000 records. Elapsed time: 00:09:43s. Time for last 1,000,000: 1s. Last read position: chr7:128,754,283
INFO 2026-06-08 09:21:19 MarkDuplicates Tracking 1063870 as yet unmatched pairs. 14236 records in RAM.
INFO 2026-06-08 09:21:21 MarkDuplicates Read 268,000,000 records. Elapsed time: 00:09:45s. Time for last 1,000,000: 2s. Last read position: chr7:134,933,212
INFO 2026-06-08 09:21:21 MarkDuplicates Tracking 1060138 as yet unmatched pairs. 10483 records in RAM.
INFO 2026-06-08 09:21:23 MarkDuplicates Read 269,000,000 records. Elapsed time: 00:09:47s. Time for last 1,000,000: 2s. Last read position: chr7:140,778,023
INFO 2026-06-08 09:21:23 MarkDuplicates Tracking 1058134 as yet unmatched pairs. 8471 records in RAM.
INFO 2026-06-08 09:21:25 MarkDuplicates Read 270,000,000 records. Elapsed time: 00:09:49s. Time for last 1,000,000: 1s. Last read position: chr7:149,250,467
INFO 2026-06-08 09:21:25 MarkDuplicates Tracking 1054607 as yet unmatched pairs. 4942 records in RAM.
INFO 2026-06-08 09:21:26 MarkDuplicates Read 271,000,000 records. Elapsed time: 00:09:51s. Time for last 1,000,000: 1s. Last read position: chr7:152,182,199
INFO 2026-06-08 09:21:26 MarkDuplicates Tracking 1051367 as yet unmatched pairs. 1700 records in RAM.
INFO 2026-06-08 09:21:28 MarkDuplicates Read 272,000,000 records. Elapsed time: 00:09:53s. Time for last 1,000,000: 2s. Last read position: chr8:11,843,948
INFO 2026-06-08 09:21:28 MarkDuplicates Tracking 1048943 as yet unmatched pairs. 58398 records in RAM.
INFO 2026-06-08 09:21:30 MarkDuplicates Read 273,000,000 records. Elapsed time: 00:09:55s. Time for last 1,000,000: 1s. Last read position: chr8:15,743,566
INFO 2026-06-08 09:21:30 MarkDuplicates Tracking 1047359 as yet unmatched pairs. 56805 records in RAM.
INFO 2026-06-08 09:21:32 MarkDuplicates Read 274,000,000 records. Elapsed time: 00:09:57s. Time for last 1,000,000: 1s. Last read position: chr8:22,201,124
INFO 2026-06-08 09:21:32 MarkDuplicates Tracking 1042929 as yet unmatched pairs. 52371 records in RAM.
INFO 2026-06-08 09:21:34 MarkDuplicates Read 275,000,000 records. Elapsed time: 00:09:58s. Time for last 1,000,000: 1s. Last read position: chr8:23,298,053
INFO 2026-06-08 09:21:34 MarkDuplicates Tracking 1041386 as yet unmatched pairs. 50817 records in RAM.
INFO 2026-06-08 09:21:36 MarkDuplicates Read 276,000,000 records. Elapsed time: 00:10:00s. Time for last 1,000,000: 1s. Last read position: chr8:28,353,209
INFO 2026-06-08 09:21:36 MarkDuplicates Tracking 1037001 as yet unmatched pairs. 46410 records in RAM.
INFO 2026-06-08 09:21:38 MarkDuplicates Read 277,000,000 records. Elapsed time: 00:10:02s. Time for last 1,000,000: 2s. Last read position: chr8:38,288,487
INFO 2026-06-08 09:21:38 MarkDuplicates Tracking 1034197 as yet unmatched pairs. 43597 records in RAM.
INFO 2026-06-08 09:21:40 MarkDuplicates Read 278,000,000 records. Elapsed time: 00:10:04s. Time for last 1,000,000: 1s. Last read position: chr8:38,419,563
INFO 2026-06-08 09:21:40 MarkDuplicates Tracking 1035012 as yet unmatched pairs. 44412 records in RAM.
INFO 2026-06-08 09:21:42 MarkDuplicates Read 279,000,000 records. Elapsed time: 00:10:06s. Time for last 1,000,000: 2s. Last read position: chr8:41,505,980
INFO 2026-06-08 09:21:42 MarkDuplicates Tracking 1029091 as yet unmatched pairs. 38486 records in RAM.
INFO 2026-06-08 09:21:44 MarkDuplicates Read 280,000,000 records. Elapsed time: 00:10:08s. Time for last 1,000,000: 2s. Last read position: chr8:47,927,297
INFO 2026-06-08 09:21:44 MarkDuplicates Tracking 1025527 as yet unmatched pairs. 34913 records in RAM.
INFO 2026-06-08 09:21:46 MarkDuplicates Read 281,000,000 records. Elapsed time: 00:10:10s. Time for last 1,000,000: 1s. Last read position: chr8:61,646,778
INFO 2026-06-08 09:21:46 MarkDuplicates Tracking 1023164 as yet unmatched pairs. 32539 records in RAM.
INFO 2026-06-08 09:21:47 MarkDuplicates Read 282,000,000 records. Elapsed time: 00:10:12s. Time for last 1,000,000: 1s. Last read position: chr8:70,598,247
INFO 2026-06-08 09:21:47 MarkDuplicates Tracking 1021422 as yet unmatched pairs. 30793 records in RAM.
INFO 2026-06-08 09:21:49 MarkDuplicates Read 283,000,000 records. Elapsed time: 00:10:13s. Time for last 1,000,000: 1s. Last read position: chr8:90,051,706
INFO 2026-06-08 09:21:49 MarkDuplicates Tracking 1017735 as yet unmatched pairs. 27089 records in RAM.
INFO 2026-06-08 09:21:51 MarkDuplicates Read 284,000,000 records. Elapsed time: 00:10:15s. Time for last 1,000,000: 1s. Last read position: chr8:99,147,873
INFO 2026-06-08 09:21:51 MarkDuplicates Tracking 1015190 as yet unmatched pairs. 24523 records in RAM.
INFO 2026-06-08 09:21:52 MarkDuplicates Read 285,000,000 records. Elapsed time: 00:10:17s. Time for last 1,000,000: 1s. Last read position: chr8:102,361,582
INFO 2026-06-08 09:21:52 MarkDuplicates Tracking 1012412 as yet unmatched pairs. 21741 records in RAM.
INFO 2026-06-08 09:21:54 MarkDuplicates Read 286,000,000 records. Elapsed time: 00:10:19s. Time for last 1,000,000: 1s. Last read position: chr8:115,619,384
INFO 2026-06-08 09:21:54 MarkDuplicates Tracking 1009614 as yet unmatched pairs. 18934 records in RAM.
INFO 2026-06-08 09:21:56 MarkDuplicates Read 287,000,000 records. Elapsed time: 00:10:20s. Time for last 1,000,000: 1s. Last read position: chr8:127,740,487
INFO 2026-06-08 09:21:56 MarkDuplicates Tracking 1006978 as yet unmatched pairs. 16283 records in RAM.
INFO 2026-06-08 09:21:57 MarkDuplicates Read 288,000,000 records. Elapsed time: 00:10:22s. Time for last 1,000,000: 1s. Last read position: chr8:143,020,936
INFO 2026-06-08 09:21:57 MarkDuplicates Tracking 1011630 as yet unmatched pairs. 20918 records in RAM.
INFO 2026-06-08 09:21:59 MarkDuplicates Read 289,000,000 records. Elapsed time: 00:10:24s. Time for last 1,000,000: 1s. Last read position: chr8:143,919,315
INFO 2026-06-08 09:21:59 MarkDuplicates Tracking 1003215 as yet unmatched pairs. 12494 records in RAM.
INFO 2026-06-08 09:22:01 MarkDuplicates Read 290,000,000 records. Elapsed time: 00:10:26s. Time for last 1,000,000: 2s. Last read position: chr8:143,991,975
INFO 2026-06-08 09:22:01 MarkDuplicates Tracking 996776 as yet unmatched pairs. 6055 records in RAM.
INFO 2026-06-08 09:22:03 MarkDuplicates Read 291,000,000 records. Elapsed time: 00:10:28s. Time for last 1,000,000: 1s. Last read position: chr8:144,473,201
INFO 2026-06-08 09:22:03 MarkDuplicates Tracking 992055 as yet unmatched pairs. 1334 records in RAM.
INFO 2026-06-08 09:22:06 MarkDuplicates Read 292,000,000 records. Elapsed time: 00:10:30s. Time for last 1,000,000: 2s. Last read position: chr9:13,222,239
INFO 2026-06-08 09:22:06 MarkDuplicates Tracking 989426 as yet unmatched pairs. 50273 records in RAM.
INFO 2026-06-08 09:22:07 MarkDuplicates Read 293,000,000 records. Elapsed time: 00:10:32s. Time for last 1,000,000: 1s. Last read position: chr9:22,005,983
INFO 2026-06-08 09:22:07 MarkDuplicates Tracking 987517 as yet unmatched pairs. 48353 records in RAM.
INFO 2026-06-08 09:22:09 MarkDuplicates Read 294,000,000 records. Elapsed time: 00:10:34s. Time for last 1,000,000: 1s. Last read position: chr9:35,560,696
INFO 2026-06-08 09:22:09 MarkDuplicates Tracking 983074 as yet unmatched pairs. 43908 records in RAM.
INFO 2026-06-08 09:22:11 MarkDuplicates Read 295,000,000 records. Elapsed time: 00:10:35s. Time for last 1,000,000: 1s. Last read position: chr9:70,259,011
INFO 2026-06-08 09:22:11 MarkDuplicates Tracking 980521 as yet unmatched pairs. 41335 records in RAM.
INFO 2026-06-08 09:22:12 MarkDuplicates Read 296,000,000 records. Elapsed time: 00:10:37s. Time for last 1,000,000: 1s. Last read position: chr9:89,001,333
INFO 2026-06-08 09:22:12 MarkDuplicates Tracking 978432 as yet unmatched pairs. 39240 records in RAM.
INFO 2026-06-08 09:22:14 MarkDuplicates Read 297,000,000 records. Elapsed time: 00:10:39s. Time for last 1,000,000: 1s. Last read position: chr9:99,144,748
INFO 2026-06-08 09:22:14 MarkDuplicates Tracking 975181 as yet unmatched pairs. 35981 records in RAM.
INFO 2026-06-08 09:22:16 MarkDuplicates Read 298,000,000 records. Elapsed time: 00:10:40s. Time for last 1,000,000: 1s. Last read position: chr9:110,435,326
INFO 2026-06-08 09:22:16 MarkDuplicates Tracking 971778 as yet unmatched pairs. 32570 records in RAM.
INFO 2026-06-08 09:22:17 MarkDuplicates Read 299,000,000 records. Elapsed time: 00:10:42s. Time for last 1,000,000: 1s. Last read position: chr9:115,035,240
INFO 2026-06-08 09:22:17 MarkDuplicates Tracking 970091 as yet unmatched pairs. 30878 records in RAM.
INFO 2026-06-08 09:22:19 MarkDuplicates Read 300,000,000 records. Elapsed time: 00:10:44s. Time for last 1,000,000: 1s. Last read position: chr9:121,356,053
INFO 2026-06-08 09:22:19 MarkDuplicates Tracking 966271 as yet unmatched pairs. 27038 records in RAM.
INFO 2026-06-08 09:22:21 MarkDuplicates Read 301,000,000 records. Elapsed time: 00:10:45s. Time for last 1,000,000: 1s. Last read position: chr9:126,880,754
INFO 2026-06-08 09:22:21 MarkDuplicates Tracking 963084 as yet unmatched pairs. 23850 records in RAM.
INFO 2026-06-08 09:22:23 MarkDuplicates Read 302,000,000 records. Elapsed time: 00:10:47s. Time for last 1,000,000: 1s. Last read position: chr9:128,248,697
INFO 2026-06-08 09:22:23 MarkDuplicates Tracking 959848 as yet unmatched pairs. 20604 records in RAM.
INFO 2026-06-08 09:22:24 MarkDuplicates Read 303,000,000 records. Elapsed time: 00:10:49s. Time for last 1,000,000: 1s. Last read position: chr9:129,111,427
INFO 2026-06-08 09:22:24 MarkDuplicates Tracking 956464 as yet unmatched pairs. 17211 records in RAM.
INFO 2026-06-08 09:22:26 MarkDuplicates Read 304,000,000 records. Elapsed time: 00:10:51s. Time for last 1,000,000: 2s. Last read position: chr9:131,432,771
INFO 2026-06-08 09:22:26 MarkDuplicates Tracking 953482 as yet unmatched pairs. 14217 records in RAM.
INFO 2026-06-08 09:22:28 MarkDuplicates Read 305,000,000 records. Elapsed time: 00:10:53s. Time for last 1,000,000: 1s. Last read position: chr9:134,139,862
INFO 2026-06-08 09:22:28 MarkDuplicates Tracking 950513 as yet unmatched pairs. 11246 records in RAM.
INFO 2026-06-08 09:22:31 MarkDuplicates Read 306,000,000 records. Elapsed time: 00:10:55s. Time for last 1,000,000: 2s. Last read position: chr9:134,818,668
INFO 2026-06-08 09:22:31 MarkDuplicates Tracking 951839 as yet unmatched pairs. 12572 records in RAM.
INFO 2026-06-08 09:22:32 MarkDuplicates Read 307,000,000 records. Elapsed time: 00:10:57s. Time for last 1,000,000: 1s. Last read position: chr9:136,506,798
INFO 2026-06-08 09:22:32 MarkDuplicates Tracking 944460 as yet unmatched pairs. 5180 records in RAM.
INFO 2026-06-08 09:22:34 MarkDuplicates Read 308,000,000 records. Elapsed time: 00:10:59s. Time for last 1,000,000: 1s. Last read position: chr9:137,716,805
INFO 2026-06-08 09:22:34 MarkDuplicates Tracking 939874 as yet unmatched pairs. 574 records in RAM.
INFO 2026-06-08 09:22:36 MarkDuplicates Read 309,000,000 records. Elapsed time: 00:11:01s. Time for last 1,000,000: 1s. Last read position: chr10:13,204,348
INFO 2026-06-08 09:22:36 MarkDuplicates Tracking 936641 as yet unmatched pairs. 33019 records in RAM.
INFO 2026-06-08 09:22:38 MarkDuplicates Read 310,000,000 records. Elapsed time: 00:11:02s. Time for last 1,000,000: 1s. Last read position: chr10:27,077,345
INFO 2026-06-08 09:22:38 MarkDuplicates Tracking 933776 as yet unmatched pairs. 30143 records in RAM.
INFO 2026-06-08 09:22:40 MarkDuplicates Read 311,000,000 records. Elapsed time: 00:11:04s. Time for last 1,000,000: 1s. Last read position: chr10:32,037,596
INFO 2026-06-08 09:22:40 MarkDuplicates Tracking 935181 as yet unmatched pairs. 31547 records in RAM.
INFO 2026-06-08 09:22:41 MarkDuplicates Read 312,000,000 records. Elapsed time: 00:11:06s. Time for last 1,000,000: 1s. Last read position: chr10:45,444,208
INFO 2026-06-08 09:22:41 MarkDuplicates Tracking 928225 as yet unmatched pairs. 24576 records in RAM.
INFO 2026-06-08 09:22:43 MarkDuplicates Read 313,000,000 records. Elapsed time: 00:11:07s. Time for last 1,000,000: 1s. Last read position: chr10:60,205,771
INFO 2026-06-08 09:22:43 MarkDuplicates Tracking 925779 as yet unmatched pairs. 22124 records in RAM.
INFO 2026-06-08 09:22:44 MarkDuplicates Read 314,000,000 records. Elapsed time: 00:11:09s. Time for last 1,000,000: 1s. Last read position: chr10:71,287,557
INFO 2026-06-08 09:22:44 MarkDuplicates Tracking 923671 as yet unmatched pairs. 20010 records in RAM.
INFO 2026-06-08 09:22:46 MarkDuplicates Read 315,000,000 records. Elapsed time: 00:11:11s. Time for last 1,000,000: 1s. Last read position: chr10:75,028,966
INFO 2026-06-08 09:22:46 MarkDuplicates Tracking 920084 as yet unmatched pairs. 16413 records in RAM.
INFO 2026-06-08 09:22:48 MarkDuplicates Read 316,000,000 records. Elapsed time: 00:11:13s. Time for last 1,000,000: 2s. Last read position: chr10:87,925,516
INFO 2026-06-08 09:22:48 MarkDuplicates Tracking 917850 as yet unmatched pairs. 14150 records in RAM.
INFO 2026-06-08 09:22:50 MarkDuplicates Read 317,000,000 records. Elapsed time: 00:11:14s. Time for last 1,000,000: 1s. Last read position: chr10:96,833,408
INFO 2026-06-08 09:22:50 MarkDuplicates Tracking 914566 as yet unmatched pairs. 10857 records in RAM.
INFO 2026-06-08 09:22:52 MarkDuplicates Read 318,000,000 records. Elapsed time: 00:11:17s. Time for last 1,000,000: 2s. Last read position: chr10:102,141,831
INFO 2026-06-08 09:22:52 MarkDuplicates Tracking 911786 as yet unmatched pairs. 8070 records in RAM.
INFO 2026-06-08 09:22:54 MarkDuplicates Read 319,000,000 records. Elapsed time: 00:11:19s. Time for last 1,000,000: 1s. Last read position: chr10:110,901,593
INFO 2026-06-08 09:22:54 MarkDuplicates Tracking 908690 as yet unmatched pairs. 4965 records in RAM.
INFO 2026-06-08 09:22:56 MarkDuplicates Read 320,000,000 records. Elapsed time: 00:11:21s. Time for last 1,000,000: 2s. Last read position: chr10:125,725,399
INFO 2026-06-08 09:22:56 MarkDuplicates Tracking 905898 as yet unmatched pairs. 2161 records in RAM.
INFO 2026-06-08 09:22:59 MarkDuplicates Read 321,000,000 records. Elapsed time: 00:11:23s. Time for last 1,000,000: 2s. Last read position: chr11:309,080
INFO 2026-06-08 09:22:59 MarkDuplicates Tracking 908823 as yet unmatched pairs. 100869 records in RAM.
INFO 2026-06-08 09:23:00 MarkDuplicates Read 322,000,000 records. Elapsed time: 00:11:25s. Time for last 1,000,000: 1s. Last read position: chr11:320,655
INFO 2026-06-08 09:23:00 MarkDuplicates Tracking 921132 as yet unmatched pairs. 113178 records in RAM.
INFO 2026-06-08 09:23:02 MarkDuplicates Read 323,000,000 records. Elapsed time: 00:11:27s. Time for last 1,000,000: 1s. Last read position: chr11:1,753,656
INFO 2026-06-08 09:23:02 MarkDuplicates Tracking 898843 as yet unmatched pairs. 90884 records in RAM.
INFO 2026-06-08 09:23:04 MarkDuplicates Read 324,000,000 records. Elapsed time: 00:11:28s. Time for last 1,000,000: 1s. Last read position: chr11:2,133,117
INFO 2026-06-08 09:23:04 MarkDuplicates Tracking 925174 as yet unmatched pairs. 117203 records in RAM.
INFO 2026-06-08 09:23:05 MarkDuplicates Read 325,000,000 records. Elapsed time: 00:11:30s. Time for last 1,000,000: 1s. Last read position: chr11:2,135,371
INFO 2026-06-08 09:23:05 MarkDuplicates Tracking 935481 as yet unmatched pairs. 127507 records in RAM.
INFO 2026-06-08 09:23:07 MarkDuplicates Read 326,000,000 records. Elapsed time: 00:11:32s. Time for last 1,000,000: 1s. Last read position: chr11:4,605,409
INFO 2026-06-08 09:23:07 MarkDuplicates Tracking 887032 as yet unmatched pairs. 79055 records in RAM.
INFO 2026-06-08 09:23:09 MarkDuplicates Read 327,000,000 records. Elapsed time: 00:11:34s. Time for last 1,000,000: 1s. Last read position: chr11:8,683,245
INFO 2026-06-08 09:23:09 MarkDuplicates Tracking 885943 as yet unmatched pairs. 77948 records in RAM.
INFO 2026-06-08 09:23:11 MarkDuplicates Read 328,000,000 records. Elapsed time: 00:11:35s. Time for last 1,000,000: 1s. Last read position: chr11:10,804,405
INFO 2026-06-08 09:23:11 MarkDuplicates Tracking 882375 as yet unmatched pairs. 74374 records in RAM.
INFO 2026-06-08 09:23:12 MarkDuplicates Read 329,000,000 records. Elapsed time: 00:11:37s. Time for last 1,000,000: 1s. Last read position: chr11:18,403,732
INFO 2026-06-08 09:23:12 MarkDuplicates Tracking 886243 as yet unmatched pairs. 78237 records in RAM.
INFO 2026-06-08 09:23:14 MarkDuplicates Read 330,000,000 records. Elapsed time: 00:11:39s. Time for last 1,000,000: 1s. Last read position: chr11:34,076,394
INFO 2026-06-08 09:23:14 MarkDuplicates Tracking 876718 as yet unmatched pairs. 68708 records in RAM.
INFO 2026-06-08 09:23:16 MarkDuplicates Read 331,000,000 records. Elapsed time: 00:11:40s. Time for last 1,000,000: 1s. Last read position: chr11:46,311,062
INFO 2026-06-08 09:23:16 MarkDuplicates Tracking 873207 as yet unmatched pairs. 65188 records in RAM.
INFO 2026-06-08 09:23:18 MarkDuplicates Read 332,000,000 records. Elapsed time: 00:11:42s. Time for last 1,000,000: 1s. Last read position: chr11:47,425,134
INFO 2026-06-08 09:23:18 MarkDuplicates Tracking 870589 as yet unmatched pairs. 62564 records in RAM.
INFO 2026-06-08 09:23:19 MarkDuplicates Read 333,000,000 records. Elapsed time: 00:11:44s. Time for last 1,000,000: 1s. Last read position: chr11:57,614,407
INFO 2026-06-08 09:23:19 MarkDuplicates Tracking 867682 as yet unmatched pairs. 59643 records in RAM.
INFO 2026-06-08 09:23:21 MarkDuplicates Read 334,000,000 records. Elapsed time: 00:11:46s. Time for last 1,000,000: 2s. Last read position: chr11:61,416,307
INFO 2026-06-08 09:23:21 MarkDuplicates Tracking 864059 as yet unmatched pairs. 56017 records in RAM.
INFO 2026-06-08 09:23:24 MarkDuplicates Read 335,000,000 records. Elapsed time: 00:11:48s. Time for last 1,000,000: 2s. Last read position: chr11:62,559,729
INFO 2026-06-08 09:23:24 MarkDuplicates Tracking 862994 as yet unmatched pairs. 54945 records in RAM.
INFO 2026-06-08 09:23:26 MarkDuplicates Read 336,000,000 records. Elapsed time: 00:11:51s. Time for last 1,000,000: 2s. Last read position: chr11:63,753,105
INFO 2026-06-08 09:23:26 MarkDuplicates Tracking 859441 as yet unmatched pairs. 51388 records in RAM.
INFO 2026-06-08 09:23:28 MarkDuplicates Read 337,000,000 records. Elapsed time: 00:11:52s. Time for last 1,000,000: 1s. Last read position: chr11:64,769,436
INFO 2026-06-08 09:23:28 MarkDuplicates Tracking 855367 as yet unmatched pairs. 47307 records in RAM.
INFO 2026-06-08 09:23:29 MarkDuplicates Read 338,000,000 records. Elapsed time: 00:11:54s. Time for last 1,000,000: 1s. Last read position: chr11:65,541,140
INFO 2026-06-08 09:23:29 MarkDuplicates Tracking 853577 as yet unmatched pairs. 45483 records in RAM.
INFO 2026-06-08 09:23:31 MarkDuplicates Read 339,000,000 records. Elapsed time: 00:11:56s. Time for last 1,000,000: 1s. Last read position: chr11:65,660,157
INFO 2026-06-08 09:23:31 MarkDuplicates Tracking 850718 as yet unmatched pairs. 42617 records in RAM.
INFO 2026-06-08 09:23:33 MarkDuplicates Read 340,000,000 records. Elapsed time: 00:11:58s. Time for last 1,000,000: 1s. Last read position: chr11:66,315,686
INFO 2026-06-08 09:23:33 MarkDuplicates Tracking 846898 as yet unmatched pairs. 38797 records in RAM.
INFO 2026-06-08 09:23:35 MarkDuplicates Read 341,000,000 records. Elapsed time: 00:11:59s. Time for last 1,000,000: 1s. Last read position: chr11:67,440,376
INFO 2026-06-08 09:23:35 MarkDuplicates Tracking 841920 as yet unmatched pairs. 33806 records in RAM.
INFO 2026-06-08 09:23:36 MarkDuplicates Read 342,000,000 records. Elapsed time: 00:12:01s. Time for last 1,000,000: 1s. Last read position: chr11:69,643,783
INFO 2026-06-08 09:23:36 MarkDuplicates Tracking 840638 as yet unmatched pairs. 32521 records in RAM.
INFO 2026-06-08 09:23:38 MarkDuplicates Read 343,000,000 records. Elapsed time: 00:12:03s. Time for last 1,000,000: 1s. Last read position: chr11:72,228,688
INFO 2026-06-08 09:23:38 MarkDuplicates Tracking 835674 as yet unmatched pairs. 27549 records in RAM.
INFO 2026-06-08 09:23:40 MarkDuplicates Read 344,000,000 records. Elapsed time: 00:12:04s. Time for last 1,000,000: 1s. Last read position: chr11:75,193,430
INFO 2026-06-08 09:23:40 MarkDuplicates Tracking 832285 as yet unmatched pairs. 24151 records in RAM.
INFO 2026-06-08 09:23:41 MarkDuplicates Read 345,000,000 records. Elapsed time: 00:12:06s. Time for last 1,000,000: 1s. Last read position: chr11:77,020,280
INFO 2026-06-08 09:23:41 MarkDuplicates Tracking 828962 as yet unmatched pairs. 20826 records in RAM.
INFO 2026-06-08 09:23:43 MarkDuplicates Read 346,000,000 records. Elapsed time: 00:12:08s. Time for last 1,000,000: 1s. Last read position: chr11:90,283,792
INFO 2026-06-08 09:23:43 MarkDuplicates Tracking 826069 as yet unmatched pairs. 17924 records in RAM.
INFO 2026-06-08 09:23:45 MarkDuplicates Read 347,000,000 records. Elapsed time: 00:12:09s. Time for last 1,000,000: 1s. Last read position: chr11:102,114,310
INFO 2026-06-08 09:23:45 MarkDuplicates Tracking 826240 as yet unmatched pairs. 18084 records in RAM.
INFO 2026-06-08 09:23:47 MarkDuplicates Read 348,000,000 records. Elapsed time: 00:12:11s. Time for last 1,000,000: 1s. Last read position: chr11:108,474,916
INFO 2026-06-08 09:23:47 MarkDuplicates Tracking 820870 as yet unmatched pairs. 12704 records in RAM.
INFO 2026-06-08 09:23:48 MarkDuplicates Read 349,000,000 records. Elapsed time: 00:12:13s. Time for last 1,000,000: 1s. Last read position: chr11:118,401,627
INFO 2026-06-08 09:23:48 MarkDuplicates Tracking 818522 as yet unmatched pairs. 10343 records in RAM.
INFO 2026-06-08 09:23:51 MarkDuplicates Read 350,000,000 records. Elapsed time: 00:12:16s. Time for last 1,000,000: 2s. Last read position: chr11:119,051,570
INFO 2026-06-08 09:23:51 MarkDuplicates Tracking 815286 as yet unmatched pairs. 7106 records in RAM.
INFO 2026-06-08 09:23:53 MarkDuplicates Read 351,000,000 records. Elapsed time: 00:12:17s. Time for last 1,000,000: 1s. Last read position: chr11:123,059,850
INFO 2026-06-08 09:23:53 MarkDuplicates Tracking 813942 as yet unmatched pairs. 5753 records in RAM.
INFO 2026-06-08 09:23:54 MarkDuplicates Read 352,000,000 records. Elapsed time: 00:12:19s. Time for last 1,000,000: 1s. Last read position: chr11:130,135,598
INFO 2026-06-08 09:23:54 MarkDuplicates Tracking 809551 as yet unmatched pairs. 1360 records in RAM.
INFO 2026-06-08 09:23:57 MarkDuplicates Read 353,000,000 records. Elapsed time: 00:12:22s. Time for last 1,000,000: 2s. Last read position: chr12:881,707
INFO 2026-06-08 09:23:57 MarkDuplicates Tracking 809109 as yet unmatched pairs. 114322 records in RAM.
INFO 2026-06-08 09:23:59 MarkDuplicates Read 354,000,000 records. Elapsed time: 00:12:23s. Time for last 1,000,000: 1s. Last read position: chr12:3,280,400
INFO 2026-06-08 09:23:59 MarkDuplicates Tracking 803893 as yet unmatched pairs. 109101 records in RAM.
INFO 2026-06-08 09:24:00 MarkDuplicates Read 355,000,000 records. Elapsed time: 00:12:25s. Time for last 1,000,000: 1s. Last read position: chr12:6,587,415
INFO 2026-06-08 09:24:00 MarkDuplicates Tracking 800531 as yet unmatched pairs. 105737 records in RAM.
INFO 2026-06-08 09:24:02 MarkDuplicates Read 356,000,000 records. Elapsed time: 00:12:27s. Time for last 1,000,000: 1s. Last read position: chr12:6,922,110
INFO 2026-06-08 09:24:02 MarkDuplicates Tracking 798594 as yet unmatched pairs. 103798 records in RAM.
INFO 2026-06-08 09:24:04 MarkDuplicates Read 357,000,000 records. Elapsed time: 00:12:29s. Time for last 1,000,000: 1s. Last read position: chr12:7,929,849
INFO 2026-06-08 09:24:04 MarkDuplicates Tracking 797016 as yet unmatched pairs. 102209 records in RAM.
INFO 2026-06-08 09:24:06 MarkDuplicates Read 358,000,000 records. Elapsed time: 00:12:30s. Time for last 1,000,000: 1s. Last read position: chr12:9,106,259
INFO 2026-06-08 09:24:06 MarkDuplicates Tracking 793210 as yet unmatched pairs. 98400 records in RAM.
INFO 2026-06-08 09:24:07 MarkDuplicates Read 359,000,000 records. Elapsed time: 00:12:32s. Time for last 1,000,000: 1s. Last read position: chr12:12,165,146
INFO 2026-06-08 09:24:07 MarkDuplicates Tracking 789543 as yet unmatched pairs. 94725 records in RAM.
INFO 2026-06-08 09:24:09 MarkDuplicates Read 360,000,000 records. Elapsed time: 00:12:34s. Time for last 1,000,000: 1s. Last read position: chr12:20,449,832
INFO 2026-06-08 09:24:09 MarkDuplicates Tracking 787198 as yet unmatched pairs. 92368 records in RAM.
INFO 2026-06-08 09:24:11 MarkDuplicates Read 361,000,000 records. Elapsed time: 00:12:36s. Time for last 1,000,000: 1s. Last read position: chr12:27,314,514
INFO 2026-06-08 09:24:11 MarkDuplicates Tracking 784006 as yet unmatched pairs. 89155 records in RAM.
INFO 2026-06-08 09:24:13 MarkDuplicates Read 362,000,000 records. Elapsed time: 00:12:38s. Time for last 1,000,000: 2s. Last read position: chr12:43,795,528
INFO 2026-06-08 09:24:13 MarkDuplicates Tracking 781402 as yet unmatched pairs. 86538 records in RAM.
INFO 2026-06-08 09:24:16 MarkDuplicates Read 363,000,000 records. Elapsed time: 00:12:40s. Time for last 1,000,000: 2s. Last read position: chr12:48,782,566
INFO 2026-06-08 09:24:16 MarkDuplicates Tracking 778411 as yet unmatched pairs. 83530 records in RAM.
INFO 2026-06-08 09:24:17 MarkDuplicates Read 364,000,000 records. Elapsed time: 00:12:42s. Time for last 1,000,000: 1s. Last read position: chr12:49,128,092
INFO 2026-06-08 09:24:17 MarkDuplicates Tracking 783584 as yet unmatched pairs. 88703 records in RAM.
INFO 2026-06-08 09:24:19 MarkDuplicates Read 365,000,000 records. Elapsed time: 00:12:43s. Time for last 1,000,000: 1s. Last read position: chr12:49,272,403
INFO 2026-06-08 09:24:19 MarkDuplicates Tracking 774153 as yet unmatched pairs. 79272 records in RAM.
INFO 2026-06-08 09:24:20 MarkDuplicates Read 366,000,000 records. Elapsed time: 00:12:45s. Time for last 1,000,000: 1s. Last read position: chr12:50,195,868
INFO 2026-06-08 09:24:20 MarkDuplicates Tracking 771707 as yet unmatched pairs. 76817 records in RAM.
INFO 2026-06-08 09:24:22 MarkDuplicates Read 367,000,000 records. Elapsed time: 00:12:47s. Time for last 1,000,000: 1s. Last read position: chr12:52,054,826
INFO 2026-06-08 09:24:22 MarkDuplicates Tracking 775008 as yet unmatched pairs. 80113 records in RAM.
INFO 2026-06-08 09:24:24 MarkDuplicates Read 368,000,000 records. Elapsed time: 00:12:48s. Time for last 1,000,000: 1s. Last read position: chr12:53,298,087
INFO 2026-06-08 09:24:24 MarkDuplicates Tracking 768624 as yet unmatched pairs. 73718 records in RAM.
INFO 2026-06-08 09:24:26 MarkDuplicates Read 369,000,000 records. Elapsed time: 00:12:50s. Time for last 1,000,000: 1s. Last read position: chr12:54,182,473
INFO 2026-06-08 09:24:26 MarkDuplicates Tracking 762266 as yet unmatched pairs. 67353 records in RAM.
INFO 2026-06-08 09:24:27 MarkDuplicates Read 370,000,000 records. Elapsed time: 00:12:52s. Time for last 1,000,000: 1s. Last read position: chr12:55,725,586
INFO 2026-06-08 09:24:27 MarkDuplicates Tracking 762270 as yet unmatched pairs. 67353 records in RAM.
INFO 2026-06-08 09:24:29 MarkDuplicates Read 371,000,000 records. Elapsed time: 00:12:54s. Time for last 1,000,000: 2s. Last read position: chr12:56,184,840
INFO 2026-06-08 09:24:29 MarkDuplicates Tracking 757043 as yet unmatched pairs. 62122 records in RAM.
INFO 2026-06-08 09:24:32 MarkDuplicates Read 372,000,000 records. Elapsed time: 00:12:56s. Time for last 1,000,000: 2s. Last read position: chr12:56,644,880
INFO 2026-06-08 09:24:32 MarkDuplicates Tracking 755138 as yet unmatched pairs. 60213 records in RAM.
INFO 2026-06-08 09:24:33 MarkDuplicates Read 373,000,000 records. Elapsed time: 00:12:58s. Time for last 1,000,000: 1s. Last read position: chr12:57,096,370
INFO 2026-06-08 09:24:33 MarkDuplicates Tracking 750619 as yet unmatched pairs. 55692 records in RAM.
INFO 2026-06-08 09:24:35 MarkDuplicates Read 374,000,000 records. Elapsed time: 00:13:00s. Time for last 1,000,000: 1s. Last read position: chr12:57,173,852
INFO 2026-06-08 09:24:35 MarkDuplicates Tracking 749189 as yet unmatched pairs. 54257 records in RAM.
INFO 2026-06-08 09:24:37 MarkDuplicates Read 375,000,000 records. Elapsed time: 00:13:01s. Time for last 1,000,000: 1s. Last read position: chr12:57,205,380
INFO 2026-06-08 09:24:37 MarkDuplicates Tracking 745902 as yet unmatched pairs. 50970 records in RAM.
INFO 2026-06-08 09:24:39 MarkDuplicates Read 376,000,000 records. Elapsed time: 00:13:03s. Time for last 1,000,000: 1s. Last read position: chr12:57,527,893
INFO 2026-06-08 09:24:39 MarkDuplicates Tracking 742209 as yet unmatched pairs. 47274 records in RAM.
INFO 2026-06-08 09:24:40 MarkDuplicates Read 377,000,000 records. Elapsed time: 00:13:05s. Time for last 1,000,000: 1s. Last read position: chr12:62,467,283
INFO 2026-06-08 09:24:40 MarkDuplicates Tracking 740275 as yet unmatched pairs. 45340 records in RAM.
INFO 2026-06-08 09:24:42 MarkDuplicates Read 378,000,000 records. Elapsed time: 00:13:07s. Time for last 1,000,000: 1s. Last read position: chr12:68,553,460
INFO 2026-06-08 09:24:42 MarkDuplicates Tracking 736190 as yet unmatched pairs. 41238 records in RAM.
INFO 2026-06-08 09:24:44 MarkDuplicates Read 379,000,000 records. Elapsed time: 00:13:08s. Time for last 1,000,000: 1s. Last read position: chr12:76,031,271
INFO 2026-06-08 09:24:44 MarkDuplicates Tracking 735640 as yet unmatched pairs. 40681 records in RAM.
INFO 2026-06-08 09:24:46 MarkDuplicates Read 380,000,000 records. Elapsed time: 00:13:10s. Time for last 1,000,000: 1s. Last read position: chr12:89,350,790
INFO 2026-06-08 09:24:46 MarkDuplicates Tracking 733971 as yet unmatched pairs. 38990 records in RAM.
INFO 2026-06-08 09:24:47 MarkDuplicates Read 381,000,000 records. Elapsed time: 00:13:12s. Time for last 1,000,000: 1s. Last read position: chr12:93,394,646
INFO 2026-06-08 09:24:47 MarkDuplicates Tracking 728658 as yet unmatched pairs. 33675 records in RAM.
INFO 2026-06-08 09:24:49 MarkDuplicates Read 382,000,000 records. Elapsed time: 00:13:13s. Time for last 1,000,000: 1s. Last read position: chr12:101,371,094
INFO 2026-06-08 09:24:49 MarkDuplicates Tracking 725599 as yet unmatched pairs. 30604 records in RAM.
INFO 2026-06-08 09:24:51 MarkDuplicates Read 383,000,000 records. Elapsed time: 00:13:15s. Time for last 1,000,000: 1s. Last read position: chr12:104,457,457
INFO 2026-06-08 09:24:51 MarkDuplicates Tracking 724298 as yet unmatched pairs. 29297 records in RAM.
INFO 2026-06-08 09:24:52 MarkDuplicates Read 384,000,000 records. Elapsed time: 00:13:17s. Time for last 1,000,000: 1s. Last read position: chr12:109,769,190
INFO 2026-06-08 09:24:52 MarkDuplicates Tracking 720137 as yet unmatched pairs. 25128 records in RAM.
INFO 2026-06-08 09:24:55 MarkDuplicates Read 385,000,000 records. Elapsed time: 00:13:19s. Time for last 1,000,000: 2s. Last read position: chr12:111,729,908
INFO 2026-06-08 09:24:55 MarkDuplicates Tracking 717201 as yet unmatched pairs. 22175 records in RAM.
INFO 2026-06-08 09:24:57 MarkDuplicates Read 386,000,000 records. Elapsed time: 00:13:21s. Time for last 1,000,000: 1s. Last read position: chr12:112,968,161
INFO 2026-06-08 09:24:57 MarkDuplicates Tracking 715403 as yet unmatched pairs. 20374 records in RAM.
INFO 2026-06-08 09:24:58 MarkDuplicates Read 387,000,000 records. Elapsed time: 00:13:23s. Time for last 1,000,000: 1s. Last read position: chr12:119,770,806
INFO 2026-06-08 09:24:58 MarkDuplicates Tracking 711039 as yet unmatched pairs. 16005 records in RAM.
INFO 2026-06-08 09:25:00 MarkDuplicates Read 388,000,000 records. Elapsed time: 00:13:25s. Time for last 1,000,000: 2s. Last read position: chr12:121,328,484
INFO 2026-06-08 09:25:00 MarkDuplicates Tracking 709435 as yet unmatched pairs. 14388 records in RAM.
INFO 2026-06-08 09:25:02 MarkDuplicates Read 389,000,000 records. Elapsed time: 00:13:27s. Time for last 1,000,000: 1s. Last read position: chr12:123,265,231
INFO 2026-06-08 09:25:02 MarkDuplicates Tracking 709922 as yet unmatched pairs. 14871 records in RAM.
INFO 2026-06-08 09:25:04 MarkDuplicates Read 390,000,000 records. Elapsed time: 00:13:28s. Time for last 1,000,000: 1s. Last read position: chr12:124,346,758
INFO 2026-06-08 09:25:04 MarkDuplicates Tracking 703940 as yet unmatched pairs. 8879 records in RAM.
INFO 2026-06-08 09:25:05 MarkDuplicates Read 391,000,000 records. Elapsed time: 00:13:30s. Time for last 1,000,000: 1s. Last read position: chr12:131,961,647
INFO 2026-06-08 09:25:05 MarkDuplicates Tracking 699932 as yet unmatched pairs. 4871 records in RAM.
INFO 2026-06-08 09:25:07 MarkDuplicates Read 392,000,000 records. Elapsed time: 00:13:32s. Time for last 1,000,000: 1s. Last read position: chr12:132,816,799
INFO 2026-06-08 09:25:07 MarkDuplicates Tracking 697242 as yet unmatched pairs. 2175 records in RAM.
INFO 2026-06-08 09:25:09 MarkDuplicates Read 393,000,000 records. Elapsed time: 00:13:34s. Time for last 1,000,000: 2s. Last read position: chr13:20,862,761
INFO 2026-06-08 09:25:09 MarkDuplicates Tracking 693133 as yet unmatched pairs. 37832 records in RAM.
INFO 2026-06-08 09:25:11 MarkDuplicates Read 394,000,000 records. Elapsed time: 00:13:36s. Time for last 1,000,000: 1s. Last read position: chr13:28,662,504
INFO 2026-06-08 09:25:11 MarkDuplicates Tracking 693222 as yet unmatched pairs. 37919 records in RAM.
INFO 2026-06-08 09:25:13 MarkDuplicates Read 395,000,000 records. Elapsed time: 00:13:38s. Time for last 1,000,000: 1s. Last read position: chr13:35,606,427
INFO 2026-06-08 09:25:13 MarkDuplicates Tracking 687693 as yet unmatched pairs. 32379 records in RAM.
INFO 2026-06-08 09:25:15 MarkDuplicates Read 396,000,000 records. Elapsed time: 00:13:40s. Time for last 1,000,000: 1s. Last read position: chr13:37,579,251
INFO 2026-06-08 09:25:15 MarkDuplicates Tracking 688006 as yet unmatched pairs. 32682 records in RAM.
INFO 2026-06-08 09:25:17 MarkDuplicates Read 397,000,000 records. Elapsed time: 00:13:41s. Time for last 1,000,000: 1s. Last read position: chr13:39,600,891
INFO 2026-06-08 09:25:17 MarkDuplicates Tracking 683559 as yet unmatched pairs. 28234 records in RAM.
INFO 2026-06-08 09:25:18 MarkDuplicates Read 398,000,000 records. Elapsed time: 00:13:43s. Time for last 1,000,000: 1s. Last read position: chr13:45,340,155
INFO 2026-06-08 09:25:18 MarkDuplicates Tracking 683793 as yet unmatched pairs. 28459 records in RAM.
INFO 2026-06-08 09:25:21 MarkDuplicates Read 399,000,000 records. Elapsed time: 00:13:45s. Time for last 1,000,000: 2s. Last read position: chr13:51,389,389
INFO 2026-06-08 09:25:21 MarkDuplicates Tracking 677515 as yet unmatched pairs. 22174 records in RAM.
INFO 2026-06-08 09:25:22 MarkDuplicates Read 400,000,000 records. Elapsed time: 00:13:47s. Time for last 1,000,000: 1s. Last read position: chr13:77,098,756
INFO 2026-06-08 09:25:22 MarkDuplicates Tracking 674503 as yet unmatched pairs. 19150 records in RAM.
INFO 2026-06-08 09:25:24 MarkDuplicates Read 401,000,000 records. Elapsed time: 00:13:49s. Time for last 1,000,000: 1s. Last read position: chr13:98,384,740
INFO 2026-06-08 09:25:24 MarkDuplicates Tracking 671710 as yet unmatched pairs. 16345 records in RAM.
INFO 2026-06-08 09:25:26 MarkDuplicates Read 402,000,000 records. Elapsed time: 00:13:51s. Time for last 1,000,000: 2s. Last read position: chr13:102,868,191
INFO 2026-06-08 09:25:26 MarkDuplicates Tracking 668423 as yet unmatched pairs. 13049 records in RAM.
INFO 2026-06-08 09:25:29 MarkDuplicates Read 403,000,000 records. Elapsed time: 00:13:53s. Time for last 1,000,000: 2s. Last read position: chr13:110,192,213
INFO 2026-06-08 09:25:29 MarkDuplicates Tracking 666700 as yet unmatched pairs. 11321 records in RAM.
INFO 2026-06-08 09:25:30 MarkDuplicates Read 404,000,000 records. Elapsed time: 00:13:55s. Time for last 1,000,000: 1s. Last read position: chr13:110,436,322
INFO 2026-06-08 09:25:30 MarkDuplicates Tracking 662443 as yet unmatched pairs. 7064 records in RAM.
INFO 2026-06-08 09:25:32 MarkDuplicates Read 405,000,000 records. Elapsed time: 00:13:57s. Time for last 1,000,000: 1s. Last read position: chr13:110,627,494
INFO 2026-06-08 09:25:32 MarkDuplicates Tracking 659061 as yet unmatched pairs. 3682 records in RAM.
INFO 2026-06-08 09:25:34 MarkDuplicates Read 406,000,000 records. Elapsed time: 00:13:59s. Time for last 1,000,000: 1s. Last read position: chr14:19,097,897
INFO 2026-06-08 09:25:34 MarkDuplicates Tracking 655376 as yet unmatched pairs. 34143 records in RAM.
INFO 2026-06-08 09:25:36 MarkDuplicates Read 407,000,000 records. Elapsed time: 00:14:00s. Time for last 1,000,000: 1s. Last read position: chr14:22,836,843
INFO 2026-06-08 09:25:36 MarkDuplicates Tracking 654897 as yet unmatched pairs. 33653 records in RAM.
INFO 2026-06-08 09:25:37 MarkDuplicates Read 408,000,000 records. Elapsed time: 00:14:02s. Time for last 1,000,000: 1s. Last read position: chr14:24,151,945
INFO 2026-06-08 09:25:37 MarkDuplicates Tracking 649688 as yet unmatched pairs. 28442 records in RAM.
INFO 2026-06-08 09:25:39 MarkDuplicates Read 409,000,000 records. Elapsed time: 00:14:04s. Time for last 1,000,000: 1s. Last read position: chr14:32,093,820
INFO 2026-06-08 09:25:39 MarkDuplicates Tracking 646671 as yet unmatched pairs. 25422 records in RAM.
INFO 2026-06-08 09:25:41 MarkDuplicates Read 410,000,000 records. Elapsed time: 00:14:05s. Time for last 1,000,000: 1s. Last read position: chr14:50,419,957
INFO 2026-06-08 09:25:41 MarkDuplicates Tracking 644142 as yet unmatched pairs. 22886 records in RAM.
INFO 2026-06-08 09:25:43 MarkDuplicates Read 411,000,000 records. Elapsed time: 00:14:07s. Time for last 1,000,000: 1s. Last read position: chr14:55,661,495
INFO 2026-06-08 09:25:43 MarkDuplicates Tracking 641748 as yet unmatched pairs. 20489 records in RAM.
INFO 2026-06-08 09:25:44 MarkDuplicates Read 412,000,000 records. Elapsed time: 00:14:09s. Time for last 1,000,000: 1s. Last read position: chr14:67,735,196
INFO 2026-06-08 09:25:44 MarkDuplicates Tracking 638218 as yet unmatched pairs. 16948 records in RAM.
INFO 2026-06-08 09:25:46 MarkDuplicates Read 413,000,000 records. Elapsed time: 00:14:10s. Time for last 1,000,000: 1s. Last read position: chr14:73,737,117
INFO 2026-06-08 09:25:46 MarkDuplicates Tracking 635683 as yet unmatched pairs. 14396 records in RAM.
INFO 2026-06-08 09:25:48 MarkDuplicates Read 414,000,000 records. Elapsed time: 00:14:12s. Time for last 1,000,000: 1s. Last read position: chr14:75,281,207
INFO 2026-06-08 09:25:48 MarkDuplicates Tracking 635142 as yet unmatched pairs. 13852 records in RAM.
INFO 2026-06-08 09:25:49 MarkDuplicates Read 415,000,000 records. Elapsed time: 00:14:14s. Time for last 1,000,000: 1s. Last read position: chr14:91,465,265
INFO 2026-06-08 09:25:49 MarkDuplicates Tracking 629493 as yet unmatched pairs. 8201 records in RAM.
INFO 2026-06-08 09:25:51 MarkDuplicates Read 416,000,000 records. Elapsed time: 00:14:16s. Time for last 1,000,000: 1s. Last read position: chr14:101,901,820
INFO 2026-06-08 09:25:51 MarkDuplicates Tracking 626934 as yet unmatched pairs. 5636 records in RAM.
INFO 2026-06-08 09:25:53 MarkDuplicates Read 417,000,000 records. Elapsed time: 00:14:17s. Time for last 1,000,000: 1s. Last read position: chr14:103,339,247
INFO 2026-06-08 09:25:53 MarkDuplicates Tracking 623960 as yet unmatched pairs. 2655 records in RAM.
INFO 2026-06-08 09:25:55 MarkDuplicates Read 418,000,000 records. Elapsed time: 00:14:20s. Time for last 1,000,000: 2s. Last read position: chr15:22,872,883
INFO 2026-06-08 09:25:55 MarkDuplicates Tracking 621211 as yet unmatched pairs. 52534 records in RAM.
INFO 2026-06-08 09:25:56 MarkDuplicates Read 419,000,000 records. Elapsed time: 00:14:21s. Time for last 1,000,000: 1s. Last read position: chr15:32,449,561
INFO 2026-06-08 09:25:56 MarkDuplicates Tracking 618275 as yet unmatched pairs. 49587 records in RAM.
INFO 2026-06-08 09:25:58 MarkDuplicates Read 420,000,000 records. Elapsed time: 00:14:23s. Time for last 1,000,000: 1s. Last read position: chr15:40,471,649
INFO 2026-06-08 09:25:58 MarkDuplicates Tracking 615939 as yet unmatched pairs. 47248 records in RAM.
INFO 2026-06-08 09:26:00 MarkDuplicates Read 421,000,000 records. Elapsed time: 00:14:24s. Time for last 1,000,000: 1s. Last read position: chr15:42,663,473
INFO 2026-06-08 09:26:00 MarkDuplicates Tracking 612868 as yet unmatched pairs. 44176 records in RAM.
INFO 2026-06-08 09:26:02 MarkDuplicates Read 422,000,000 records. Elapsed time: 00:14:26s. Time for last 1,000,000: 1s. Last read position: chr15:43,765,900
INFO 2026-06-08 09:26:02 MarkDuplicates Tracking 613587 as yet unmatched pairs. 44895 records in RAM.
INFO 2026-06-08 09:26:04 MarkDuplicates Read 423,000,000 records. Elapsed time: 00:14:28s. Time for last 1,000,000: 1s. Last read position: chr15:44,717,673
INFO 2026-06-08 09:26:04 MarkDuplicates Tracking 610455 as yet unmatched pairs. 41762 records in RAM.
INFO 2026-06-08 09:26:05 MarkDuplicates Read 424,000,000 records. Elapsed time: 00:14:30s. Time for last 1,000,000: 1s. Last read position: chr15:51,507,148
INFO 2026-06-08 09:26:05 MarkDuplicates Tracking 604974 as yet unmatched pairs. 36272 records in RAM.
INFO 2026-06-08 09:26:07 MarkDuplicates Read 425,000,000 records. Elapsed time: 00:14:32s. Time for last 1,000,000: 1s. Last read position: chr15:57,263,154
INFO 2026-06-08 09:26:07 MarkDuplicates Tracking 604475 as yet unmatched pairs. 35768 records in RAM.
INFO 2026-06-08 09:26:09 MarkDuplicates Read 426,000,000 records. Elapsed time: 00:14:33s. Time for last 1,000,000: 1s. Last read position: chr15:63,570,514
INFO 2026-06-08 09:26:09 MarkDuplicates Tracking 600050 as yet unmatched pairs. 31342 records in RAM.
INFO 2026-06-08 09:26:10 MarkDuplicates Read 427,000,000 records. Elapsed time: 00:14:35s. Time for last 1,000,000: 1s. Last read position: chr15:65,263,300
INFO 2026-06-08 09:26:10 MarkDuplicates Tracking 597080 as yet unmatched pairs. 28364 records in RAM.
INFO 2026-06-08 09:26:12 MarkDuplicates Read 428,000,000 records. Elapsed time: 00:14:37s. Time for last 1,000,000: 1s. Last read position: chr15:69,455,191
INFO 2026-06-08 09:26:12 MarkDuplicates Tracking 597637 as yet unmatched pairs. 28921 records in RAM.
INFO 2026-06-08 09:26:14 MarkDuplicates Read 429,000,000 records. Elapsed time: 00:14:38s. Time for last 1,000,000: 1s. Last read position: chr15:72,752,301
INFO 2026-06-08 09:26:14 MarkDuplicates Tracking 592695 as yet unmatched pairs. 23979 records in RAM.
INFO 2026-06-08 09:26:16 MarkDuplicates Read 430,000,000 records. Elapsed time: 00:14:40s. Time for last 1,000,000: 1s. Last read position: chr15:74,035,637
INFO 2026-06-08 09:26:16 MarkDuplicates Tracking 589948 as yet unmatched pairs. 21222 records in RAM.
INFO 2026-06-08 09:26:17 MarkDuplicates Read 431,000,000 records. Elapsed time: 00:14:42s. Time for last 1,000,000: 1s. Last read position: chr15:75,207,816
INFO 2026-06-08 09:26:17 MarkDuplicates Tracking 585159 as yet unmatched pairs. 16429 records in RAM.
INFO 2026-06-08 09:26:19 MarkDuplicates Read 432,000,000 records. Elapsed time: 00:14:43s. Time for last 1,000,000: 1s. Last read position: chr15:77,632,345
INFO 2026-06-08 09:26:19 MarkDuplicates Tracking 581720 as yet unmatched pairs. 12988 records in RAM.
INFO 2026-06-08 09:26:21 MarkDuplicates Read 433,000,000 records. Elapsed time: 00:14:46s. Time for last 1,000,000: 2s. Last read position: chr15:83,020,703
INFO 2026-06-08 09:26:21 MarkDuplicates Tracking 579329 as yet unmatched pairs. 10587 records in RAM.
INFO 2026-06-08 09:26:23 MarkDuplicates Read 434,000,000 records. Elapsed time: 00:14:47s. Time for last 1,000,000: 1s. Last read position: chr15:85,741,424
INFO 2026-06-08 09:26:23 MarkDuplicates Tracking 576678 as yet unmatched pairs. 7930 records in RAM.
INFO 2026-06-08 09:26:25 MarkDuplicates Read 435,000,000 records. Elapsed time: 00:14:49s. Time for last 1,000,000: 2s. Last read position: chr15:90,477,678
INFO 2026-06-08 09:26:25 MarkDuplicates Tracking 573086 as yet unmatched pairs. 4331 records in RAM.
INFO 2026-06-08 09:26:27 MarkDuplicates Read 436,000,000 records. Elapsed time: 00:14:52s. Time for last 1,000,000: 2s. Last read position: chr15:100,879,844
INFO 2026-06-08 09:26:27 MarkDuplicates Tracking 570381 as yet unmatched pairs. 1612 records in RAM.
INFO 2026-06-08 09:26:29 MarkDuplicates Read 437,000,000 records. Elapsed time: 00:14:54s. Time for last 1,000,000: 2s. Last read position: chr16:552,518
INFO 2026-06-08 09:26:29 MarkDuplicates Tracking 566827 as yet unmatched pairs. 72885 records in RAM.
INFO 2026-06-08 09:26:31 MarkDuplicates Read 438,000,000 records. Elapsed time: 00:14:56s. Time for last 1,000,000: 1s. Last read position: chr16:1,762,354
INFO 2026-06-08 09:26:31 MarkDuplicates Tracking 563486 as yet unmatched pairs. 69542 records in RAM.
INFO 2026-06-08 09:26:33 MarkDuplicates Read 439,000,000 records. Elapsed time: 00:14:58s. Time for last 1,000,000: 1s. Last read position: chr16:2,113,161
INFO 2026-06-08 09:26:33 MarkDuplicates Tracking 559265 as yet unmatched pairs. 65319 records in RAM.
INFO 2026-06-08 09:26:35 MarkDuplicates Read 440,000,000 records. Elapsed time: 00:15:00s. Time for last 1,000,000: 1s. Last read position: chr16:2,763,711
INFO 2026-06-08 09:26:35 MarkDuplicates Tracking 557466 as yet unmatched pairs. 63511 records in RAM.
INFO 2026-06-08 09:26:37 MarkDuplicates Read 441,000,000 records. Elapsed time: 00:15:01s. Time for last 1,000,000: 1s. Last read position: chr16:3,443,700
INFO 2026-06-08 09:26:37 MarkDuplicates Tracking 552857 as yet unmatched pairs. 58890 records in RAM.
INFO 2026-06-08 09:26:39 MarkDuplicates Read 442,000,000 records. Elapsed time: 00:15:03s. Time for last 1,000,000: 1s. Last read position: chr16:8,797,929
INFO 2026-06-08 09:26:39 MarkDuplicates Tracking 549877 as yet unmatched pairs. 55907 records in RAM.
INFO 2026-06-08 09:26:40 MarkDuplicates Read 443,000,000 records. Elapsed time: 00:15:05s. Time for last 1,000,000: 1s. Last read position: chr16:14,886,787
INFO 2026-06-08 09:26:40 MarkDuplicates Tracking 547990 as yet unmatched pairs. 54018 records in RAM.
INFO 2026-06-08 09:26:42 MarkDuplicates Read 444,000,000 records. Elapsed time: 00:15:07s. Time for last 1,000,000: 2s. Last read position: chr16:15,625,380
INFO 2026-06-08 09:26:42 MarkDuplicates Tracking 545914 as yet unmatched pairs. 51942 records in RAM.
INFO 2026-06-08 09:26:44 MarkDuplicates Read 445,000,000 records. Elapsed time: 00:15:09s. Time for last 1,000,000: 1s. Last read position: chr16:16,362,358
INFO 2026-06-08 09:26:44 MarkDuplicates Tracking 545744 as yet unmatched pairs. 51772 records in RAM.
INFO 2026-06-08 09:26:46 MarkDuplicates Read 446,000,000 records. Elapsed time: 00:15:10s. Time for last 1,000,000: 1s. Last read position: chr16:18,387,562
INFO 2026-06-08 09:26:46 MarkDuplicates Tracking 544193 as yet unmatched pairs. 50221 records in RAM.
INFO 2026-06-08 09:26:47 MarkDuplicates Read 447,000,000 records. Elapsed time: 00:15:12s. Time for last 1,000,000: 1s. Last read position: chr16:19,733,758
INFO 2026-06-08 09:26:47 MarkDuplicates Tracking 541227 as yet unmatched pairs. 47255 records in RAM.
INFO 2026-06-08 09:26:49 MarkDuplicates Read 448,000,000 records. Elapsed time: 00:15:14s. Time for last 1,000,000: 1s. Last read position: chr16:21,851,130
INFO 2026-06-08 09:26:49 MarkDuplicates Tracking 539923 as yet unmatched pairs. 45951 records in RAM.
INFO 2026-06-08 09:26:51 MarkDuplicates Read 449,000,000 records. Elapsed time: 00:15:16s. Time for last 1,000,000: 2s. Last read position: chr16:23,557,980
INFO 2026-06-08 09:26:51 MarkDuplicates Tracking 539015 as yet unmatched pairs. 45042 records in RAM.
INFO 2026-06-08 09:26:53 MarkDuplicates Read 450,000,000 records. Elapsed time: 00:15:18s. Time for last 1,000,000: 1s. Last read position: chr16:28,713,703
INFO 2026-06-08 09:26:53 MarkDuplicates Tracking 535738 as yet unmatched pairs. 41754 records in RAM.
INFO 2026-06-08 09:26:55 MarkDuplicates Read 451,000,000 records. Elapsed time: 00:15:19s. Time for last 1,000,000: 1s. Last read position: chr16:29,485,110
INFO 2026-06-08 09:26:55 MarkDuplicates Tracking 534312 as yet unmatched pairs. 40328 records in RAM.
INFO 2026-06-08 09:26:57 MarkDuplicates Read 452,000,000 records. Elapsed time: 00:15:21s. Time for last 1,000,000: 1s. Last read position: chr16:29,989,656
INFO 2026-06-08 09:26:57 MarkDuplicates Tracking 530787 as yet unmatched pairs. 36803 records in RAM.
INFO 2026-06-08 09:26:58 MarkDuplicates Read 453,000,000 records. Elapsed time: 00:15:23s. Time for last 1,000,000: 1s. Last read position: chr16:30,370,150
INFO 2026-06-08 09:26:58 MarkDuplicates Tracking 528286 as yet unmatched pairs. 34300 records in RAM.
INFO 2026-06-08 09:27:01 MarkDuplicates Read 454,000,000 records. Elapsed time: 00:15:25s. Time for last 1,000,000: 2s. Last read position: chr16:31,109,768
INFO 2026-06-08 09:27:01 MarkDuplicates Tracking 525188 as yet unmatched pairs. 31202 records in RAM.
INFO 2026-06-08 09:27:02 MarkDuplicates Read 455,000,000 records. Elapsed time: 00:15:27s. Time for last 1,000,000: 1s. Last read position: chr16:34,268,217
INFO 2026-06-08 09:27:02 MarkDuplicates Tracking 522196 as yet unmatched pairs. 28202 records in RAM.
INFO 2026-06-08 09:27:04 MarkDuplicates Read 456,000,000 records. Elapsed time: 00:15:29s. Time for last 1,000,000: 1s. Last read position: chr16:53,934,068
INFO 2026-06-08 09:27:04 MarkDuplicates Tracking 519953 as yet unmatched pairs. 25959 records in RAM.
INFO 2026-06-08 09:27:06 MarkDuplicates Read 457,000,000 records. Elapsed time: 00:15:30s. Time for last 1,000,000: 1s. Last read position: chr16:58,575,062
INFO 2026-06-08 09:27:06 MarkDuplicates Tracking 516614 as yet unmatched pairs. 22612 records in RAM.
INFO 2026-06-08 09:27:08 MarkDuplicates Read 458,000,000 records. Elapsed time: 00:15:32s. Time for last 1,000,000: 1s. Last read position: chr16:67,542,437
INFO 2026-06-08 09:27:08 MarkDuplicates Tracking 513287 as yet unmatched pairs. 19273 records in RAM.
INFO 2026-06-08 09:27:09 MarkDuplicates Read 459,000,000 records. Elapsed time: 00:15:34s. Time for last 1,000,000: 1s. Last read position: chr16:69,692,779
INFO 2026-06-08 09:27:09 MarkDuplicates Tracking 510053 as yet unmatched pairs. 16039 records in RAM.
INFO 2026-06-08 09:27:11 MarkDuplicates Read 460,000,000 records. Elapsed time: 00:15:35s. Time for last 1,000,000: 1s. Last read position: chr16:72,089,091
INFO 2026-06-08 09:27:11 MarkDuplicates Tracking 507191 as yet unmatched pairs. 13177 records in RAM.
INFO 2026-06-08 09:27:13 MarkDuplicates Read 461,000,000 records. Elapsed time: 00:15:37s. Time for last 1,000,000: 1s. Last read position: chr16:75,568,163
INFO 2026-06-08 09:27:13 MarkDuplicates Tracking 504952 as yet unmatched pairs. 10935 records in RAM.
INFO 2026-06-08 09:27:15 MarkDuplicates Read 462,000,000 records. Elapsed time: 00:15:39s. Time for last 1,000,000: 2s. Last read position: chr16:85,806,737
INFO 2026-06-08 09:27:15 MarkDuplicates Tracking 501728 as yet unmatched pairs. 7701 records in RAM.
INFO 2026-06-08 09:27:17 MarkDuplicates Read 463,000,000 records. Elapsed time: 00:15:42s. Time for last 1,000,000: 2s. Last read position: chr16:89,268,530
INFO 2026-06-08 09:27:17 MarkDuplicates Tracking 497548 as yet unmatched pairs. 3506 records in RAM.
INFO 2026-06-08 09:27:21 MarkDuplicates Read 464,000,000 records. Elapsed time: 00:15:45s. Time for last 1,000,000: 3s. Last read position: chr17:655,754
INFO 2026-06-08 09:27:21 MarkDuplicates Tracking 494261 as yet unmatched pairs. 189297 records in RAM.
INFO 2026-06-08 09:27:22 MarkDuplicates Read 465,000,000 records. Elapsed time: 00:15:47s. Time for last 1,000,000: 1s. Last read position: chr17:1,658,558
INFO 2026-06-08 09:27:22 MarkDuplicates Tracking 491275 as yet unmatched pairs. 186306 records in RAM.
INFO 2026-06-08 09:27:24 MarkDuplicates Read 466,000,000 records. Elapsed time: 00:15:49s. Time for last 1,000,000: 1s. Last read position: chr17:2,388,040
INFO 2026-06-08 09:27:24 MarkDuplicates Tracking 487063 as yet unmatched pairs. 182087 records in RAM.
INFO 2026-06-08 09:27:26 MarkDuplicates Read 467,000,000 records. Elapsed time: 00:15:51s. Time for last 1,000,000: 1s. Last read position: chr17:4,946,803
INFO 2026-06-08 09:27:26 MarkDuplicates Tracking 486254 as yet unmatched pairs. 181276 records in RAM.
INFO 2026-06-08 09:27:28 MarkDuplicates Read 468,000,000 records. Elapsed time: 00:15:53s. Time for last 1,000,000: 1s. Last read position: chr17:7,240,800
INFO 2026-06-08 09:27:28 MarkDuplicates Tracking 483653 as yet unmatched pairs. 178675 records in RAM.
INFO 2026-06-08 09:27:30 MarkDuplicates Read 469,000,000 records. Elapsed time: 00:15:54s. Time for last 1,000,000: 1s. Last read position: chr17:7,513,787
INFO 2026-06-08 09:27:30 MarkDuplicates Tracking 480523 as yet unmatched pairs. 175542 records in RAM.
INFO 2026-06-08 09:27:32 MarkDuplicates Read 470,000,000 records. Elapsed time: 00:15:56s. Time for last 1,000,000: 1s. Last read position: chr17:7,894,934
INFO 2026-06-08 09:27:32 MarkDuplicates Tracking 475915 as yet unmatched pairs. 170934 records in RAM.
INFO 2026-06-08 09:27:34 MarkDuplicates Read 471,000,000 records. Elapsed time: 00:15:58s. Time for last 1,000,000: 1s. Last read position: chr17:10,019,798
INFO 2026-06-08 09:27:34 MarkDuplicates Tracking 472662 as yet unmatched pairs. 167674 records in RAM.
INFO 2026-06-08 09:27:36 MarkDuplicates Read 472,000,000 records. Elapsed time: 00:16:00s. Time for last 1,000,000: 2s. Last read position: chr17:17,126,825
INFO 2026-06-08 09:27:36 MarkDuplicates Tracking 470496 as yet unmatched pairs. 165502 records in RAM.
INFO 2026-06-08 09:27:38 MarkDuplicates Read 473,000,000 records. Elapsed time: 00:16:02s. Time for last 1,000,000: 1s. Last read position: chr17:18,305,184
INFO 2026-06-08 09:27:38 MarkDuplicates Tracking 466765 as yet unmatched pairs. 161769 records in RAM.
INFO 2026-06-08 09:27:40 MarkDuplicates Read 474,000,000 records. Elapsed time: 00:16:04s. Time for last 1,000,000: 1s. Last read position: chr17:28,628,456
INFO 2026-06-08 09:27:40 MarkDuplicates Tracking 464152 as yet unmatched pairs. 159156 records in RAM.
INFO 2026-06-08 09:27:41 MarkDuplicates Read 475,000,000 records. Elapsed time: 00:16:06s. Time for last 1,000,000: 1s. Last read position: chr17:30,732,090
INFO 2026-06-08 09:27:41 MarkDuplicates Tracking 461647 as yet unmatched pairs. 156650 records in RAM.
INFO 2026-06-08 09:27:43 MarkDuplicates Read 476,000,000 records. Elapsed time: 00:16:08s. Time for last 1,000,000: 1s. Last read position: chr17:34,255,310
INFO 2026-06-08 09:27:43 MarkDuplicates Tracking 459300 as yet unmatched pairs. 154302 records in RAM.
INFO 2026-06-08 09:27:45 MarkDuplicates Read 477,000,000 records. Elapsed time: 00:16:09s. Time for last 1,000,000: 1s. Last read position: chr17:37,553,134
INFO 2026-06-08 09:27:45 MarkDuplicates Tracking 455764 as yet unmatched pairs. 150762 records in RAM.
INFO 2026-06-08 09:27:47 MarkDuplicates Read 478,000,000 records. Elapsed time: 00:16:11s. Time for last 1,000,000: 1s. Last read position: chr17:39,108,233
INFO 2026-06-08 09:27:47 MarkDuplicates Tracking 454436 as yet unmatched pairs. 149433 records in RAM.
INFO 2026-06-08 09:27:48 MarkDuplicates Read 479,000,000 records. Elapsed time: 00:16:13s. Time for last 1,000,000: 1s. Last read position: chr17:40,262,580
INFO 2026-06-08 09:27:48 MarkDuplicates Tracking 449763 as yet unmatched pairs. 144760 records in RAM.
INFO 2026-06-08 09:27:51 MarkDuplicates Read 480,000,000 records. Elapsed time: 00:16:16s. Time for last 1,000,000: 2s. Last read position: chr17:41,893,075
INFO 2026-06-08 09:27:51 MarkDuplicates Tracking 447164 as yet unmatched pairs. 142161 records in RAM.
INFO 2026-06-08 09:27:53 MarkDuplicates Read 481,000,000 records. Elapsed time: 00:16:18s. Time for last 1,000,000: 2s. Last read position: chr17:42,671,448
INFO 2026-06-08 09:27:53 MarkDuplicates Tracking 443654 as yet unmatched pairs. 138651 records in RAM.
INFO 2026-06-08 09:27:55 MarkDuplicates Read 482,000,000 records. Elapsed time: 00:16:19s. Time for last 1,000,000: 1s. Last read position: chr17:44,074,731
INFO 2026-06-08 09:27:55 MarkDuplicates Tracking 440664 as yet unmatched pairs. 135661 records in RAM.
INFO 2026-06-08 09:27:57 MarkDuplicates Read 483,000,000 records. Elapsed time: 00:16:21s. Time for last 1,000,000: 1s. Last read position: chr17:45,395,556
INFO 2026-06-08 09:27:57 MarkDuplicates Tracking 437368 as yet unmatched pairs. 132360 records in RAM.
INFO 2026-06-08 09:27:58 MarkDuplicates Read 484,000,000 records. Elapsed time: 00:16:23s. Time for last 1,000,000: 1s. Last read position: chr17:47,677,020
INFO 2026-06-08 09:27:58 MarkDuplicates Tracking 435863 as yet unmatched pairs. 130855 records in RAM.
INFO 2026-06-08 09:28:00 MarkDuplicates Read 485,000,000 records. Elapsed time: 00:16:24s. Time for last 1,000,000: 1s. Last read position: chr17:50,149,680
INFO 2026-06-08 09:28:00 MarkDuplicates Tracking 432295 as yet unmatched pairs. 127266 records in RAM.
INFO 2026-06-08 09:28:02 MarkDuplicates Read 486,000,000 records. Elapsed time: 00:16:26s. Time for last 1,000,000: 1s. Last read position: chr17:50,185,904
INFO 2026-06-08 09:28:02 MarkDuplicates Tracking 450106 as yet unmatched pairs. 145072 records in RAM.
INFO 2026-06-08 09:28:03 MarkDuplicates Read 487,000,000 records. Elapsed time: 00:16:28s. Time for last 1,000,000: 1s. Last read position: chr17:50,186,724
INFO 2026-06-08 09:28:03 MarkDuplicates Tracking 451044 as yet unmatched pairs. 146010 records in RAM.
INFO 2026-06-08 09:28:05 MarkDuplicates Read 488,000,000 records. Elapsed time: 00:16:30s. Time for last 1,000,000: 1s. Last read position: chr17:50,187,070
INFO 2026-06-08 09:28:05 MarkDuplicates Tracking 486365 as yet unmatched pairs. 181323 records in RAM.
INFO 2026-06-08 09:28:07 MarkDuplicates Read 489,000,000 records. Elapsed time: 00:16:32s. Time for last 1,000,000: 1s. Last read position: chr17:50,187,924
INFO 2026-06-08 09:28:07 MarkDuplicates Tracking 488570 as yet unmatched pairs. 183514 records in RAM.
INFO 2026-06-08 09:28:09 MarkDuplicates Read 490,000,000 records. Elapsed time: 00:16:34s. Time for last 1,000,000: 1s. Last read position: chr17:50,188,542
INFO 2026-06-08 09:28:09 MarkDuplicates Tracking 470162 as yet unmatched pairs. 165106 records in RAM.
INFO 2026-06-08 09:30:15 MarkDuplicates Read 491,000,000 records. Elapsed time: 00:18:40s. Time for last 1,000,000: 126s. Last read position: chr17:50,188,781
INFO 2026-06-08 09:30:15 MarkDuplicates Tracking 490548 as yet unmatched pairs. 185492 records in RAM.
INFO 2026-06-08 09:30:17 MarkDuplicates Read 492,000,000 records. Elapsed time: 00:18:42s. Time for last 1,000,000: 1s. Last read position: chr17:50,189,236
INFO 2026-06-08 09:30:17 MarkDuplicates Tracking 469388 as yet unmatched pairs. 164325 records in RAM.
INFO 2026-06-08 09:30:19 MarkDuplicates Read 493,000,000 records. Elapsed time: 00:18:43s. Time for last 1,000,000: 1s. Last read position: chr17:50,189,504
INFO 2026-06-08 09:30:19 MarkDuplicates Tracking 480206 as yet unmatched pairs. 175143 records in RAM.
INFO 2026-06-08 09:30:21 MarkDuplicates Read 494,000,000 records. Elapsed time: 00:18:45s. Time for last 1,000,000: 1s. Last read position: chr17:50,189,902
INFO 2026-06-08 09:30:21 MarkDuplicates Tracking 469102 as yet unmatched pairs. 164039 records in RAM.
INFO 2026-06-08 09:30:22 MarkDuplicates Read 495,000,000 records. Elapsed time: 00:18:47s. Time for last 1,000,000: 1s. Last read position: chr17:50,190,333
INFO 2026-06-08 09:30:22 MarkDuplicates Tracking 513509 as yet unmatched pairs. 208446 records in RAM.
INFO 2026-06-08 09:30:24 MarkDuplicates Read 496,000,000 records. Elapsed time: 00:18:49s. Time for last 1,000,000: 1s. Last read position: chr17:50,190,892
INFO 2026-06-08 09:30:24 MarkDuplicates Tracking 464463 as yet unmatched pairs. 159394 records in RAM.
INFO 2026-06-08 09:30:26 MarkDuplicates Read 497,000,000 records. Elapsed time: 00:18:51s. Time for last 1,000,000: 1s. Last read position: chr17:50,191,831
INFO 2026-06-08 09:30:26 MarkDuplicates Tracking 464096 as yet unmatched pairs. 159022 records in RAM.
INFO 2026-06-08 09:30:28 MarkDuplicates Read 498,000,000 records. Elapsed time: 00:18:53s. Time for last 1,000,000: 1s. Last read position: chr17:50,192,649
INFO 2026-06-08 09:30:28 MarkDuplicates Tracking 442234 as yet unmatched pairs. 137159 records in RAM.
INFO 2026-06-08 09:30:30 MarkDuplicates Read 499,000,000 records. Elapsed time: 00:18:55s. Time for last 1,000,000: 1s. Last read position: chr17:50,193,000
INFO 2026-06-08 09:30:30 MarkDuplicates Tracking 472345 as yet unmatched pairs. 167270 records in RAM.
INFO 2026-06-08 09:30:32 MarkDuplicates Read 500,000,000 records. Elapsed time: 00:18:56s. Time for last 1,000,000: 1s. Last read position: chr17:50,194,004
INFO 2026-06-08 09:30:32 MarkDuplicates Tracking 471069 as yet unmatched pairs. 165993 records in RAM.
INFO 2026-06-08 09:30:34 MarkDuplicates Read 501,000,000 records. Elapsed time: 00:18:58s. Time for last 1,000,000: 1s. Last read position: chr17:50,194,378
INFO 2026-06-08 09:30:34 MarkDuplicates Tracking 459903 as yet unmatched pairs. 154823 records in RAM.
INFO 2026-06-08 09:30:35 MarkDuplicates Read 502,000,000 records. Elapsed time: 00:19:00s. Time for last 1,000,000: 1s. Last read position: chr17:50,194,727
INFO 2026-06-08 09:30:35 MarkDuplicates Tracking 452241 as yet unmatched pairs. 147161 records in RAM.
INFO 2026-06-08 09:30:37 MarkDuplicates Read 503,000,000 records. Elapsed time: 00:19:02s. Time for last 1,000,000: 1s. Last read position: chr17:50,195,241
INFO 2026-06-08 09:30:37 MarkDuplicates Tracking 442418 as yet unmatched pairs. 137338 records in RAM.
INFO 2026-06-08 09:30:39 MarkDuplicates Read 504,000,000 records. Elapsed time: 00:19:04s. Time for last 1,000,000: 1s. Last read position: chr17:50,195,590
INFO 2026-06-08 09:30:39 MarkDuplicates Tracking 450929 as yet unmatched pairs. 145843 records in RAM.
INFO 2026-06-08 09:30:41 MarkDuplicates Read 505,000,000 records. Elapsed time: 00:19:06s. Time for last 1,000,000: 1s. Last read position: chr17:50,196,154
INFO 2026-06-08 09:30:41 MarkDuplicates Tracking 459821 as yet unmatched pairs. 154734 records in RAM.
INFO 2026-06-08 09:30:43 MarkDuplicates Read 506,000,000 records. Elapsed time: 00:19:07s. Time for last 1,000,000: 1s. Last read position: chr17:50,196,337
INFO 2026-06-08 09:30:43 MarkDuplicates Tracking 461140 as yet unmatched pairs. 156052 records in RAM.
INFO 2026-06-08 09:30:45 MarkDuplicates Read 507,000,000 records. Elapsed time: 00:19:09s. Time for last 1,000,000: 1s. Last read position: chr17:50,196,649
INFO 2026-06-08 09:30:45 MarkDuplicates Tracking 478036 as yet unmatched pairs. 172948 records in RAM.
INFO 2026-06-08 09:30:47 MarkDuplicates Read 508,000,000 records. Elapsed time: 00:19:11s. Time for last 1,000,000: 1s. Last read position: chr17:50,197,664
INFO 2026-06-08 09:30:47 MarkDuplicates Tracking 445453 as yet unmatched pairs. 140361 records in RAM.
INFO 2026-06-08 09:30:49 MarkDuplicates Read 509,000,000 records. Elapsed time: 00:19:13s. Time for last 1,000,000: 1s. Last read position: chr17:50,198,203
INFO 2026-06-08 09:30:49 MarkDuplicates Tracking 400334 as yet unmatched pairs. 95242 records in RAM.
INFO 2026-06-08 09:30:50 MarkDuplicates Read 510,000,000 records. Elapsed time: 00:19:15s. Time for last 1,000,000: 1s. Last read position: chr17:50,199,290
INFO 2026-06-08 09:30:50 MarkDuplicates Tracking 417854 as yet unmatched pairs. 112760 records in RAM.
INFO 2026-06-08 09:30:52 MarkDuplicates Read 511,000,000 records. Elapsed time: 00:19:17s. Time for last 1,000,000: 1s. Last read position: chr17:50,199,825
INFO 2026-06-08 09:30:52 MarkDuplicates Tracking 384022 as yet unmatched pairs. 78927 records in RAM.
INFO 2026-06-08 09:30:54 MarkDuplicates Read 512,000,000 records. Elapsed time: 00:19:18s. Time for last 1,000,000: 1s. Last read position: chr17:51,161,764
INFO 2026-06-08 09:30:54 MarkDuplicates Tracking 346518 as yet unmatched pairs. 41422 records in RAM.
INFO 2026-06-08 09:30:56 MarkDuplicates Read 513,000,000 records. Elapsed time: 00:19:20s. Time for last 1,000,000: 1s. Last read position: chr17:59,663,840
INFO 2026-06-08 09:30:56 MarkDuplicates Tracking 346997 as yet unmatched pairs. 41900 records in RAM.
INFO 2026-06-08 09:30:57 MarkDuplicates Read 514,000,000 records. Elapsed time: 00:19:22s. Time for last 1,000,000: 1s. Last read position: chr17:59,838,264
INFO 2026-06-08 09:30:57 MarkDuplicates Tracking 341780 as yet unmatched pairs. 36683 records in RAM.
INFO 2026-06-08 09:30:59 MarkDuplicates Read 515,000,000 records. Elapsed time: 00:19:24s. Time for last 1,000,000: 1s. Last read position: chr17:62,672,095
INFO 2026-06-08 09:30:59 MarkDuplicates Tracking 338768 as yet unmatched pairs. 33670 records in RAM.
INFO 2026-06-08 09:31:01 MarkDuplicates Read 516,000,000 records. Elapsed time: 00:19:26s. Time for last 1,000,000: 2s. Last read position: chr17:64,378,061
INFO 2026-06-08 09:31:01 MarkDuplicates Tracking 333342 as yet unmatched pairs. 28239 records in RAM.
INFO 2026-06-08 09:31:03 MarkDuplicates Read 517,000,000 records. Elapsed time: 00:19:27s. Time for last 1,000,000: 1s. Last read position: chr17:67,945,956
INFO 2026-06-08 09:31:03 MarkDuplicates Tracking 330965 as yet unmatched pairs. 25857 records in RAM.
INFO 2026-06-08 09:31:04 MarkDuplicates Read 518,000,000 records. Elapsed time: 00:19:29s. Time for last 1,000,000: 1s. Last read position: chr17:68,929,220
INFO 2026-06-08 09:31:04 MarkDuplicates Tracking 327784 as yet unmatched pairs. 22676 records in RAM.
INFO 2026-06-08 09:31:06 MarkDuplicates Read 519,000,000 records. Elapsed time: 00:19:31s. Time for last 1,000,000: 1s. Last read position: chr17:75,667,404
INFO 2026-06-08 09:31:06 MarkDuplicates Tracking 324740 as yet unmatched pairs. 19630 records in RAM.
INFO 2026-06-08 09:31:08 MarkDuplicates Read 520,000,000 records. Elapsed time: 00:19:32s. Time for last 1,000,000: 1s. Last read position: chr17:77,200,498
INFO 2026-06-08 09:31:08 MarkDuplicates Tracking 321281 as yet unmatched pairs. 16169 records in RAM.
INFO 2026-06-08 09:31:10 MarkDuplicates Read 521,000,000 records. Elapsed time: 00:19:34s. Time for last 1,000,000: 2s. Last read position: chr17:79,795,168
INFO 2026-06-08 09:31:10 MarkDuplicates Tracking 318326 as yet unmatched pairs. 13214 records in RAM.
INFO 2026-06-08 09:31:12 MarkDuplicates Read 522,000,000 records. Elapsed time: 00:19:36s. Time for last 1,000,000: 1s. Last read position: chr17:80,415,673
INFO 2026-06-08 09:31:12 MarkDuplicates Tracking 315082 as yet unmatched pairs. 9970 records in RAM.
INFO 2026-06-08 09:31:13 MarkDuplicates Read 523,000,000 records. Elapsed time: 00:19:38s. Time for last 1,000,000: 1s. Last read position: chr17:81,822,768
INFO 2026-06-08 09:31:13 MarkDuplicates Tracking 311619 as yet unmatched pairs. 6507 records in RAM.
INFO 2026-06-08 09:31:15 MarkDuplicates Read 524,000,000 records. Elapsed time: 00:19:40s. Time for last 1,000,000: 2s. Last read position: chr17:82,056,529
INFO 2026-06-08 09:31:15 MarkDuplicates Tracking 309100 as yet unmatched pairs. 3984 records in RAM.
INFO 2026-06-08 09:31:18 MarkDuplicates Read 525,000,000 records. Elapsed time: 00:19:43s. Time for last 1,000,000: 3s. Last read position: chr18:203,111
INFO 2026-06-08 09:31:18 MarkDuplicates Tracking 305454 as yet unmatched pairs. 17140 records in RAM.
INFO 2026-06-08 09:31:20 MarkDuplicates Read 526,000,000 records. Elapsed time: 00:19:45s. Time for last 1,000,000: 1s. Last read position: chr18:10,680,248
INFO 2026-06-08 09:31:20 MarkDuplicates Tracking 302672 as yet unmatched pairs. 14353 records in RAM.
INFO 2026-06-08 09:31:22 MarkDuplicates Read 527,000,000 records. Elapsed time: 00:19:46s. Time for last 1,000,000: 1s. Last read position: chr18:24,451,299
INFO 2026-06-08 09:31:22 MarkDuplicates Tracking 299429 as yet unmatched pairs. 11106 records in RAM.
INFO 2026-06-08 09:31:23 MarkDuplicates Read 528,000,000 records. Elapsed time: 00:19:48s. Time for last 1,000,000: 1s. Last read position: chr18:45,063,270
INFO 2026-06-08 09:31:23 MarkDuplicates Tracking 297069 as yet unmatched pairs. 8746 records in RAM.
INFO 2026-06-08 09:31:25 MarkDuplicates Read 529,000,000 records. Elapsed time: 00:19:50s. Time for last 1,000,000: 1s. Last read position: chr18:55,254,581
INFO 2026-06-08 09:31:25 MarkDuplicates Tracking 298937 as yet unmatched pairs. 10614 records in RAM.
INFO 2026-06-08 09:31:27 MarkDuplicates Read 530,000,000 records. Elapsed time: 00:19:51s. Time for last 1,000,000: 1s. Last read position: chr18:62,291,577
INFO 2026-06-08 09:31:27 MarkDuplicates Tracking 292375 as yet unmatched pairs. 4048 records in RAM.
INFO 2026-06-08 09:31:28 MarkDuplicates Read 531,000,000 records. Elapsed time: 00:19:53s. Time for last 1,000,000: 1s. Last read position: chr18:80,138,296
INFO 2026-06-08 09:31:28 MarkDuplicates Tracking 288584 as yet unmatched pairs. 257 records in RAM.
INFO 2026-06-08 09:31:31 MarkDuplicates Read 532,000,000 records. Elapsed time: 00:19:56s. Time for last 1,000,000: 2s. Last read position: chr19:1,108,536
INFO 2026-06-08 09:31:31 MarkDuplicates Tracking 285592 as yet unmatched pairs. 119010 records in RAM.
INFO 2026-06-08 09:31:33 MarkDuplicates Read 533,000,000 records. Elapsed time: 00:19:58s. Time for last 1,000,000: 1s. Last read position: chr19:1,816,039
INFO 2026-06-08 09:31:33 MarkDuplicates Tracking 281551 as yet unmatched pairs. 114969 records in RAM.
INFO 2026-06-08 09:31:35 MarkDuplicates Read 534,000,000 records. Elapsed time: 00:19:59s. Time for last 1,000,000: 1s. Last read position: chr19:2,444,525
INFO 2026-06-08 09:31:35 MarkDuplicates Tracking 278031 as yet unmatched pairs. 111444 records in RAM.
INFO 2026-06-08 09:31:36 MarkDuplicates Read 535,000,000 records. Elapsed time: 00:20:01s. Time for last 1,000,000: 1s. Last read position: chr19:4,099,328
INFO 2026-06-08 09:31:36 MarkDuplicates Tracking 274954 as yet unmatched pairs. 108363 records in RAM.
INFO 2026-06-08 09:31:38 MarkDuplicates Read 536,000,000 records. Elapsed time: 00:20:03s. Time for last 1,000,000: 1s. Last read position: chr19:5,593,992
INFO 2026-06-08 09:31:38 MarkDuplicates Tracking 270846 as yet unmatched pairs. 104254 records in RAM.
INFO 2026-06-08 09:31:40 MarkDuplicates Read 537,000,000 records. Elapsed time: 00:20:04s. Time for last 1,000,000: 1s. Last read position: chr19:7,528,953
INFO 2026-06-08 09:31:40 MarkDuplicates Tracking 267209 as yet unmatched pairs. 100617 records in RAM.
INFO 2026-06-08 09:31:42 MarkDuplicates Read 538,000,000 records. Elapsed time: 00:20:07s. Time for last 1,000,000: 2s. Last read position: chr19:9,974,351
INFO 2026-06-08 09:31:42 MarkDuplicates Tracking 264125 as yet unmatched pairs. 97533 records in RAM.
INFO 2026-06-08 09:31:44 MarkDuplicates Read 539,000,000 records. Elapsed time: 00:20:09s. Time for last 1,000,000: 2s. Last read position: chr19:10,679,171
INFO 2026-06-08 09:31:44 MarkDuplicates Tracking 261981 as yet unmatched pairs. 95389 records in RAM.
INFO 2026-06-08 09:31:46 MarkDuplicates Read 540,000,000 records. Elapsed time: 00:20:11s. Time for last 1,000,000: 1s. Last read position: chr19:11,214,275
INFO 2026-06-08 09:31:46 MarkDuplicates Tracking 259636 as yet unmatched pairs. 93039 records in RAM.
INFO 2026-06-08 09:31:48 MarkDuplicates Read 541,000,000 records. Elapsed time: 00:20:12s. Time for last 1,000,000: 1s. Last read position: chr19:12,528,580
INFO 2026-06-08 09:31:48 MarkDuplicates Tracking 254836 as yet unmatched pairs. 88239 records in RAM.
INFO 2026-06-08 09:31:49 MarkDuplicates Read 542,000,000 records. Elapsed time: 00:20:14s. Time for last 1,000,000: 1s. Last read position: chr19:12,995,762
INFO 2026-06-08 09:31:49 MarkDuplicates Tracking 251887 as yet unmatched pairs. 85288 records in RAM.
INFO 2026-06-08 09:31:51 MarkDuplicates Read 543,000,000 records. Elapsed time: 00:20:16s. Time for last 1,000,000: 1s. Last read position: chr19:14,160,632
INFO 2026-06-08 09:31:51 MarkDuplicates Tracking 248618 as yet unmatched pairs. 82018 records in RAM.
INFO 2026-06-08 09:31:53 MarkDuplicates Read 544,000,000 records. Elapsed time: 00:20:18s. Time for last 1,000,000: 1s. Last read position: chr19:15,160,819
INFO 2026-06-08 09:31:53 MarkDuplicates Tracking 246649 as yet unmatched pairs. 80049 records in RAM.
INFO 2026-06-08 09:31:55 MarkDuplicates Read 545,000,000 records. Elapsed time: 00:20:20s. Time for last 1,000,000: 2s. Last read position: chr19:15,239,912
INFO 2026-06-08 09:31:55 MarkDuplicates Tracking 241611 as yet unmatched pairs. 75011 records in RAM.
INFO 2026-06-08 09:31:58 MarkDuplicates Read 546,000,000 records. Elapsed time: 00:20:22s. Time for last 1,000,000: 2s. Last read position: chr19:16,325,737
INFO 2026-06-08 09:31:58 MarkDuplicates Tracking 238058 as yet unmatched pairs. 71456 records in RAM.
INFO 2026-06-08 09:31:59 MarkDuplicates Read 547,000,000 records. Elapsed time: 00:20:24s. Time for last 1,000,000: 1s. Last read position: chr19:17,581,334
INFO 2026-06-08 09:31:59 MarkDuplicates Tracking 235220 as yet unmatched pairs. 68618 records in RAM.
INFO 2026-06-08 09:32:01 MarkDuplicates Read 548,000,000 records. Elapsed time: 00:20:26s. Time for last 1,000,000: 1s. Last read position: chr19:18,386,448
INFO 2026-06-08 09:32:01 MarkDuplicates Tracking 235287 as yet unmatched pairs. 68685 records in RAM.
INFO 2026-06-08 09:32:03 MarkDuplicates Read 549,000,000 records. Elapsed time: 00:20:27s. Time for last 1,000,000: 1s. Last read position: chr19:18,919,776
INFO 2026-06-08 09:32:03 MarkDuplicates Tracking 227174 as yet unmatched pairs. 60571 records in RAM.
INFO 2026-06-08 09:32:04 MarkDuplicates Read 550,000,000 records. Elapsed time: 00:20:29s. Time for last 1,000,000: 1s. Last read position: chr19:33,090,819
INFO 2026-06-08 09:32:04 MarkDuplicates Tracking 223998 as yet unmatched pairs. 57388 records in RAM.
INFO 2026-06-08 09:32:06 MarkDuplicates Read 551,000,000 records. Elapsed time: 00:20:31s. Time for last 1,000,000: 1s. Last read position: chr19:35,733,198
INFO 2026-06-08 09:32:06 MarkDuplicates Tracking 220410 as yet unmatched pairs. 53796 records in RAM.
INFO 2026-06-08 09:32:08 MarkDuplicates Read 552,000,000 records. Elapsed time: 00:20:32s. Time for last 1,000,000: 1s. Last read position: chr19:38,729,024
INFO 2026-06-08 09:32:08 MarkDuplicates Tracking 217810 as yet unmatched pairs. 51196 records in RAM.
INFO 2026-06-08 09:32:10 MarkDuplicates Read 553,000,000 records. Elapsed time: 00:20:34s. Time for last 1,000,000: 1s. Last read position: chr19:39,424,374
INFO 2026-06-08 09:32:10 MarkDuplicates Tracking 217628 as yet unmatched pairs. 51014 records in RAM.
INFO 2026-06-08 09:32:11 MarkDuplicates Read 554,000,000 records. Elapsed time: 00:20:36s. Time for last 1,000,000: 1s. Last read position: chr19:40,458,465
INFO 2026-06-08 09:32:11 MarkDuplicates Tracking 211569 as yet unmatched pairs. 44954 records in RAM.
INFO 2026-06-08 09:32:13 MarkDuplicates Read 555,000,000 records. Elapsed time: 00:20:38s. Time for last 1,000,000: 1s. Last read position: chr19:41,903,386
INFO 2026-06-08 09:32:13 MarkDuplicates Tracking 208241 as yet unmatched pairs. 41623 records in RAM.
INFO 2026-06-08 09:32:15 MarkDuplicates Read 556,000,000 records. Elapsed time: 00:20:40s. Time for last 1,000,000: 2s. Last read position: chr19:42,291,713
INFO 2026-06-08 09:32:15 MarkDuplicates Tracking 206712 as yet unmatched pairs. 40080 records in RAM.
INFO 2026-06-08 09:32:17 MarkDuplicates Read 557,000,000 records. Elapsed time: 00:20:41s. Time for last 1,000,000: 1s. Last read position: chr19:44,878,388
INFO 2026-06-08 09:32:17 MarkDuplicates Tracking 201621 as yet unmatched pairs. 34988 records in RAM.
INFO 2026-06-08 09:32:19 MarkDuplicates Read 558,000,000 records. Elapsed time: 00:20:43s. Time for last 1,000,000: 2s. Last read position: chr19:45,522,742
INFO 2026-06-08 09:32:19 MarkDuplicates Tracking 197727 as yet unmatched pairs. 31094 records in RAM.
INFO 2026-06-08 09:32:22 MarkDuplicates Read 559,000,000 records. Elapsed time: 00:20:46s. Time for last 1,000,000: 2s. Last read position: chr19:46,711,006
INFO 2026-06-08 09:32:22 MarkDuplicates Tracking 194336 as yet unmatched pairs. 27703 records in RAM.
INFO 2026-06-08 09:32:23 MarkDuplicates Read 560,000,000 records. Elapsed time: 00:20:48s. Time for last 1,000,000: 1s. Last read position: chr19:48,329,443
INFO 2026-06-08 09:32:23 MarkDuplicates Tracking 191475 as yet unmatched pairs. 24842 records in RAM.
INFO 2026-06-08 09:32:25 MarkDuplicates Read 561,000,000 records. Elapsed time: 00:20:50s. Time for last 1,000,000: 1s. Last read position: chr19:49,108,356
INFO 2026-06-08 09:32:25 MarkDuplicates Tracking 190639 as yet unmatched pairs. 24006 records in RAM.
INFO 2026-06-08 09:32:27 MarkDuplicates Read 562,000,000 records. Elapsed time: 00:20:51s. Time for last 1,000,000: 1s. Last read position: chr19:49,651,345
INFO 2026-06-08 09:32:27 MarkDuplicates Tracking 184710 as yet unmatched pairs. 18068 records in RAM.
INFO 2026-06-08 09:32:29 MarkDuplicates Read 563,000,000 records. Elapsed time: 00:20:53s. Time for last 1,000,000: 1s. Last read position: chr19:50,414,901
INFO 2026-06-08 09:32:29 MarkDuplicates Tracking 180611 as yet unmatched pairs. 13969 records in RAM.
INFO 2026-06-08 09:32:30 MarkDuplicates Read 564,000,000 records. Elapsed time: 00:20:55s. Time for last 1,000,000: 1s. Last read position: chr19:53,873,604
INFO 2026-06-08 09:32:30 MarkDuplicates Tracking 180895 as yet unmatched pairs. 14252 records in RAM.
INFO 2026-06-08 09:32:32 MarkDuplicates Read 565,000,000 records. Elapsed time: 00:20:56s. Time for last 1,000,000: 1s. Last read position: chr19:54,573,859
INFO 2026-06-08 09:32:32 MarkDuplicates Tracking 174201 as yet unmatched pairs. 7557 records in RAM.
INFO 2026-06-08 09:32:33 MarkDuplicates Read 566,000,000 records. Elapsed time: 00:20:58s. Time for last 1,000,000: 1s. Last read position: chr19:55,648,957
INFO 2026-06-08 09:32:33 MarkDuplicates Tracking 170871 as yet unmatched pairs. 4224 records in RAM.
INFO 2026-06-08 09:32:35 MarkDuplicates Read 567,000,000 records. Elapsed time: 00:21:00s. Time for last 1,000,000: 1s. Last read position: chr19:58,417,671
INFO 2026-06-08 09:32:35 MarkDuplicates Tracking 167756 as yet unmatched pairs. 1108 records in RAM.
INFO 2026-06-08 09:32:37 MarkDuplicates Read 568,000,000 records. Elapsed time: 00:21:02s. Time for last 1,000,000: 2s. Last read position: chr20:2,465,740
INFO 2026-06-08 09:32:37 MarkDuplicates Tracking 165000 as yet unmatched pairs. 45681 records in RAM.
INFO 2026-06-08 09:32:39 MarkDuplicates Read 569,000,000 records. Elapsed time: 00:21:04s. Time for last 1,000,000: 1s. Last read position: chr20:4,699,370
INFO 2026-06-08 09:32:39 MarkDuplicates Tracking 161342 as yet unmatched pairs. 42016 records in RAM.
INFO 2026-06-08 09:32:41 MarkDuplicates Read 570,000,000 records. Elapsed time: 00:21:05s. Time for last 1,000,000: 1s. Last read position: chr20:17,659,743
INFO 2026-06-08 09:32:41 MarkDuplicates Tracking 158751 as yet unmatched pairs. 39422 records in RAM.
INFO 2026-06-08 09:32:42 MarkDuplicates Read 571,000,000 records. Elapsed time: 00:21:07s. Time for last 1,000,000: 1s. Last read position: chr20:31,544,809
INFO 2026-06-08 09:32:42 MarkDuplicates Tracking 156520 as yet unmatched pairs. 37191 records in RAM.
INFO 2026-06-08 09:32:44 MarkDuplicates Read 572,000,000 records. Elapsed time: 00:21:09s. Time for last 1,000,000: 2s. Last read position: chr20:34,742,208
INFO 2026-06-08 09:32:44 MarkDuplicates Tracking 152615 as yet unmatched pairs. 33282 records in RAM.
INFO 2026-06-08 09:32:47 MarkDuplicates Read 573,000,000 records. Elapsed time: 00:21:12s. Time for last 1,000,000: 2s. Last read position: chr20:36,605,952
INFO 2026-06-08 09:32:47 MarkDuplicates Tracking 149781 as yet unmatched pairs. 30448 records in RAM.
INFO 2026-06-08 09:32:49 MarkDuplicates Read 574,000,000 records. Elapsed time: 00:21:13s. Time for last 1,000,000: 1s. Last read position: chr20:41,362,988
INFO 2026-06-08 09:32:49 MarkDuplicates Tracking 146446 as yet unmatched pairs. 27111 records in RAM.
INFO 2026-06-08 09:32:51 MarkDuplicates Read 575,000,000 records. Elapsed time: 00:21:15s. Time for last 1,000,000: 1s. Last read position: chr20:46,008,931
INFO 2026-06-08 09:32:51 MarkDuplicates Tracking 148100 as yet unmatched pairs. 28765 records in RAM.
INFO 2026-06-08 09:32:53 MarkDuplicates Read 576,000,000 records. Elapsed time: 00:21:17s. Time for last 1,000,000: 2s. Last read position: chr20:46,013,666
INFO 2026-06-08 09:32:53 MarkDuplicates Tracking 147836 as yet unmatched pairs. 28501 records in RAM.
INFO 2026-06-08 09:32:54 MarkDuplicates Read 577,000,000 records. Elapsed time: 00:21:19s. Time for last 1,000,000: 1s. Last read position: chr20:49,236,095
INFO 2026-06-08 09:32:54 MarkDuplicates Tracking 137459 as yet unmatched pairs. 18120 records in RAM.
INFO 2026-06-08 09:32:56 MarkDuplicates Read 578,000,000 records. Elapsed time: 00:21:21s. Time for last 1,000,000: 1s. Last read position: chr20:53,576,449
INFO 2026-06-08 09:32:56 MarkDuplicates Tracking 135636 as yet unmatched pairs. 16296 records in RAM.
INFO 2026-06-08 09:32:58 MarkDuplicates Read 579,000,000 records. Elapsed time: 00:21:23s. Time for last 1,000,000: 1s. Last read position: chr20:58,895,670
INFO 2026-06-08 09:32:58 MarkDuplicates Tracking 140532 as yet unmatched pairs. 21192 records in RAM.
INFO 2026-06-08 09:33:00 MarkDuplicates Read 580,000,000 records. Elapsed time: 00:21:24s. Time for last 1,000,000: 1s. Last read position: chr20:59,301,449
INFO 2026-06-08 09:33:00 MarkDuplicates Tracking 138270 as yet unmatched pairs. 18930 records in RAM.
INFO 2026-06-08 09:33:02 MarkDuplicates Read 581,000,000 records. Elapsed time: 00:21:26s. Time for last 1,000,000: 1s. Last read position: chr20:62,879,413
INFO 2026-06-08 09:33:02 MarkDuplicates Tracking 124504 as yet unmatched pairs. 5162 records in RAM.
INFO 2026-06-08 09:33:03 MarkDuplicates Read 582,000,000 records. Elapsed time: 00:21:28s. Time for last 1,000,000: 1s. Last read position: chr20:63,775,809
INFO 2026-06-08 09:33:03 MarkDuplicates Tracking 122383 as yet unmatched pairs. 3041 records in RAM.
INFO 2026-06-08 09:33:05 MarkDuplicates Read 583,000,000 records. Elapsed time: 00:21:30s. Time for last 1,000,000: 1s. Last read position: chr21:8,217,339
INFO 2026-06-08 09:33:05 MarkDuplicates Tracking 118320 as yet unmatched pairs. 32107 records in RAM.
INFO 2026-06-08 09:33:06 MarkDuplicates Read 584,000,000 records. Elapsed time: 00:21:31s. Time for last 1,000,000: 1s. Last read position: chr21:25,724,650
INFO 2026-06-08 09:33:06 MarkDuplicates Tracking 117588 as yet unmatched pairs. 31375 records in RAM.
INFO 2026-06-08 09:33:08 MarkDuplicates Read 585,000,000 records. Elapsed time: 00:21:33s. Time for last 1,000,000: 1s. Last read position: chr21:33,551,519
INFO 2026-06-08 09:33:08 MarkDuplicates Tracking 114427 as yet unmatched pairs. 28214 records in RAM.
INFO 2026-06-08 09:33:11 MarkDuplicates Read 586,000,000 records. Elapsed time: 00:21:35s. Time for last 1,000,000: 2s. Last read position: chr21:39,196,792
INFO 2026-06-08 09:33:11 MarkDuplicates Tracking 111019 as yet unmatched pairs. 24805 records in RAM.
INFO 2026-06-08 09:33:13 MarkDuplicates Read 587,000,000 records. Elapsed time: 00:21:37s. Time for last 1,000,000: 2s. Last read position: chr21:44,771,275
INFO 2026-06-08 09:33:13 MarkDuplicates Tracking 107980 as yet unmatched pairs. 21766 records in RAM.
INFO 2026-06-08 09:33:15 MarkDuplicates Read 588,000,000 records. Elapsed time: 00:21:39s. Time for last 1,000,000: 1s. Last read position: chr21:45,987,031
INFO 2026-06-08 09:33:15 MarkDuplicates Tracking 108385 as yet unmatched pairs. 22170 records in RAM.
INFO 2026-06-08 09:33:17 MarkDuplicates Read 589,000,000 records. Elapsed time: 00:21:41s. Time for last 1,000,000: 1s. Last read position: chr21:45,992,774
INFO 2026-06-08 09:33:17 MarkDuplicates Tracking 115061 as yet unmatched pairs. 28846 records in RAM.
INFO 2026-06-08 09:33:19 MarkDuplicates Read 590,000,000 records. Elapsed time: 00:21:44s. Time for last 1,000,000: 2s. Last read position: chr21:46,003,415
INFO 2026-06-08 09:33:19 MarkDuplicates Tracking 102825 as yet unmatched pairs. 16610 records in RAM.
INFO 2026-06-08 09:33:21 MarkDuplicates Read 591,000,000 records. Elapsed time: 00:21:46s. Time for last 1,000,000: 1s. Last read position: chr21:46,114,062
INFO 2026-06-08 09:33:21 MarkDuplicates Tracking 100026 as yet unmatched pairs. 13811 records in RAM.
INFO 2026-06-08 09:33:23 MarkDuplicates Read 592,000,000 records. Elapsed time: 00:21:47s. Time for last 1,000,000: 1s. Last read position: chr21:46,122,104
INFO 2026-06-08 09:33:23 MarkDuplicates Tracking 100598 as yet unmatched pairs. 14383 records in RAM.
INFO 2026-06-08 09:33:25 MarkDuplicates Read 593,000,000 records. Elapsed time: 00:21:49s. Time for last 1,000,000: 1s. Last read position: chr21:46,132,262
INFO 2026-06-08 09:33:25 MarkDuplicates Tracking 95414 as yet unmatched pairs. 9199 records in RAM.
INFO 2026-06-08 09:33:27 MarkDuplicates Read 594,000,000 records. Elapsed time: 00:21:51s. Time for last 1,000,000: 1s. Last read position: chr22:20,141,212
INFO 2026-06-08 09:33:27 MarkDuplicates Tracking 84913 as yet unmatched pairs. 25632 records in RAM.
INFO 2026-06-08 09:33:29 MarkDuplicates Read 595,000,000 records. Elapsed time: 00:21:53s. Time for last 1,000,000: 2s. Last read position: chr22:23,894,460
INFO 2026-06-08 09:33:29 MarkDuplicates Tracking 82537 as yet unmatched pairs. 23256 records in RAM.
INFO 2026-06-08 09:33:30 MarkDuplicates Read 596,000,000 records. Elapsed time: 00:21:55s. Time for last 1,000,000: 1s. Last read position: chr22:29,298,802
INFO 2026-06-08 09:33:30 MarkDuplicates Tracking 80025 as yet unmatched pairs. 20744 records in RAM.
INFO 2026-06-08 09:33:32 MarkDuplicates Read 597,000,000 records. Elapsed time: 00:21:57s. Time for last 1,000,000: 1s. Last read position: chr22:32,484,100
INFO 2026-06-08 09:33:32 MarkDuplicates Tracking 75483 as yet unmatched pairs. 16202 records in RAM.
INFO 2026-06-08 09:33:34 MarkDuplicates Read 598,000,000 records. Elapsed time: 00:21:58s. Time for last 1,000,000: 1s. Last read position: chr22:37,642,966
INFO 2026-06-08 09:33:34 MarkDuplicates Tracking 72244 as yet unmatched pairs. 12963 records in RAM.
INFO 2026-06-08 09:33:36 MarkDuplicates Read 599,000,000 records. Elapsed time: 00:22:00s. Time for last 1,000,000: 1s. Last read position: chr22:39,224,554
INFO 2026-06-08 09:33:36 MarkDuplicates Tracking 69037 as yet unmatched pairs. 9755 records in RAM.
INFO 2026-06-08 09:33:37 MarkDuplicates Read 600,000,000 records. Elapsed time: 00:22:02s. Time for last 1,000,000: 1s. Last read position: chr22:42,077,891
INFO 2026-06-08 09:33:37 MarkDuplicates Tracking 66173 as yet unmatched pairs. 6891 records in RAM.
INFO 2026-06-08 09:33:40 MarkDuplicates Read 601,000,000 records. Elapsed time: 00:22:04s. Time for last 1,000,000: 2s. Last read position: chr22:50,275,648
INFO 2026-06-08 09:33:40 MarkDuplicates Tracking 63141 as yet unmatched pairs. 3857 records in RAM.
INFO 2026-06-08 09:33:42 MarkDuplicates Read 602,000,000 records. Elapsed time: 00:22:07s. Time for last 1,000,000: 2s. Last read position: chrX:1,386,700
INFO 2026-06-08 09:33:42 MarkDuplicates Tracking 59524 as yet unmatched pairs. 57086 records in RAM.
INFO 2026-06-08 09:33:44 MarkDuplicates Read 603,000,000 records. Elapsed time: 00:22:08s. Time for last 1,000,000: 1s. Last read position: chrX:3,322,176
INFO 2026-06-08 09:33:44 MarkDuplicates Tracking 57067 as yet unmatched pairs. 54629 records in RAM.
INFO 2026-06-08 09:33:46 MarkDuplicates Read 604,000,000 records. Elapsed time: 00:22:10s. Time for last 1,000,000: 1s. Last read position: chrX:16,743,760
INFO 2026-06-08 09:33:46 MarkDuplicates Tracking 53625 as yet unmatched pairs. 51187 records in RAM.
INFO 2026-06-08 09:33:48 MarkDuplicates Read 605,000,000 records. Elapsed time: 00:22:12s. Time for last 1,000,000: 2s. Last read position: chrX:28,659,028
INFO 2026-06-08 09:33:48 MarkDuplicates Tracking 50596 as yet unmatched pairs. 48158 records in RAM.
INFO 2026-06-08 09:33:50 MarkDuplicates Read 606,000,000 records. Elapsed time: 00:22:14s. Time for last 1,000,000: 1s. Last read position: chrX:41,219,221
INFO 2026-06-08 09:33:50 MarkDuplicates Tracking 49094 as yet unmatched pairs. 46656 records in RAM.
INFO 2026-06-08 09:33:52 MarkDuplicates Read 607,000,000 records. Elapsed time: 00:22:17s. Time for last 1,000,000: 2s. Last read position: chrX:47,226,812
INFO 2026-06-08 09:33:52 MarkDuplicates Tracking 45949 as yet unmatched pairs. 43511 records in RAM.
INFO 2026-06-08 09:33:55 MarkDuplicates Read 608,000,000 records. Elapsed time: 00:22:19s. Time for last 1,000,000: 2s. Last read position: chrX:48,893,720
INFO 2026-06-08 09:33:55 MarkDuplicates Tracking 42140 as yet unmatched pairs. 39702 records in RAM.
INFO 2026-06-08 09:33:57 MarkDuplicates Read 609,000,000 records. Elapsed time: 00:22:21s. Time for last 1,000,000: 1s. Last read position: chrX:51,897,056
INFO 2026-06-08 09:33:57 MarkDuplicates Tracking 41367 as yet unmatched pairs. 38929 records in RAM.
INFO 2026-06-08 09:33:58 MarkDuplicates Read 610,000,000 records. Elapsed time: 00:22:23s. Time for last 1,000,000: 1s. Last read position: chrX:53,431,994
INFO 2026-06-08 09:33:58 MarkDuplicates Tracking 36359 as yet unmatched pairs. 33921 records in RAM.
INFO 2026-06-08 09:34:00 MarkDuplicates Read 611,000,000 records. Elapsed time: 00:22:25s. Time for last 1,000,000: 1s. Last read position: chrX:54,813,530
INFO 2026-06-08 09:34:00 MarkDuplicates Tracking 34744 as yet unmatched pairs. 32306 records in RAM.
INFO 2026-06-08 09:34:02 MarkDuplicates Read 612,000,000 records. Elapsed time: 00:22:27s. Time for last 1,000,000: 1s. Last read position: chrX:70,376,201
INFO 2026-06-08 09:34:02 MarkDuplicates Tracking 30384 as yet unmatched pairs. 27946 records in RAM.
INFO 2026-06-08 09:34:04 MarkDuplicates Read 613,000,000 records. Elapsed time: 00:22:28s. Time for last 1,000,000: 1s. Last read position: chrX:72,142,239
INFO 2026-06-08 09:34:04 MarkDuplicates Tracking 27749 as yet unmatched pairs. 25311 records in RAM.
INFO 2026-06-08 09:34:06 MarkDuplicates Read 614,000,000 records. Elapsed time: 00:22:30s. Time for last 1,000,000: 1s. Last read position: chrX:77,905,184
INFO 2026-06-08 09:34:06 MarkDuplicates Tracking 26473 as yet unmatched pairs. 24035 records in RAM.
INFO 2026-06-08 09:34:07 MarkDuplicates Read 615,000,000 records. Elapsed time: 00:22:32s. Time for last 1,000,000: 1s. Last read position: chrX:100,408,476
INFO 2026-06-08 09:34:07 MarkDuplicates Tracking 22453 as yet unmatched pairs. 20015 records in RAM.
INFO 2026-06-08 09:34:10 MarkDuplicates Read 616,000,000 records. Elapsed time: 00:22:35s. Time for last 1,000,000: 2s. Last read position: chrX:105,822,766
INFO 2026-06-08 09:34:10 MarkDuplicates Tracking 20038 as yet unmatched pairs. 17600 records in RAM.
INFO 2026-06-08 09:34:12 MarkDuplicates Read 617,000,000 records. Elapsed time: 00:22:37s. Time for last 1,000,000: 1s. Last read position: chrX:119,236,384
INFO 2026-06-08 09:34:12 MarkDuplicates Tracking 18350 as yet unmatched pairs. 15912 records in RAM.
INFO 2026-06-08 09:34:14 MarkDuplicates Read 618,000,000 records. Elapsed time: 00:22:38s. Time for last 1,000,000: 1s. Last read position: chrX:129,489,048
INFO 2026-06-08 09:34:14 MarkDuplicates Tracking 14926 as yet unmatched pairs. 12488 records in RAM.
INFO 2026-06-08 09:34:16 MarkDuplicates Read 619,000,000 records. Elapsed time: 00:22:41s. Time for last 1,000,000: 2s. Last read position: chrX:139,800,081
INFO 2026-06-08 09:34:16 MarkDuplicates Tracking 11716 as yet unmatched pairs. 9278 records in RAM.
INFO 2026-06-08 09:34:19 MarkDuplicates Read 620,000,000 records. Elapsed time: 00:22:44s. Time for last 1,000,000: 2s. Last read position: chrX:153,794,687
INFO 2026-06-08 09:34:19 MarkDuplicates Tracking 9246 as yet unmatched pairs. 6808 records in RAM.
INFO 2026-06-08 09:34:21 MarkDuplicates Read 621,000,000 records. Elapsed time: 00:22:45s. Time for last 1,000,000: 1s. Last read position: chrX:154,365,161
INFO 2026-06-08 09:34:21 MarkDuplicates Tracking 5916 as yet unmatched pairs. 3478 records in RAM.
INFO 2026-06-08 09:34:22 MarkDuplicates Read 622,000,000 records. Elapsed time: 00:22:47s. Time for last 1,000,000: 1s. Last read position: chrY:5,099,424
INFO 2026-06-08 09:34:22 MarkDuplicates Tracking 2451 as yet unmatched pairs. 50 records in RAM.
INFO 2026-06-08 09:34:24 MarkDuplicates Read 623,000,000 records. Elapsed time: 00:22:48s. Time for last 1,000,000: 1s. Last read position: KI270733.1:175,834
INFO 2026-06-08 09:34:24 MarkDuplicates Tracking 51 as yet unmatched pairs. 32 records in RAM.
INFO 2026-06-08 09:34:24 MarkDuplicates Read 623265689 records. 0 pairs never matched.
INFO 2026-06-08 09:35:17 MarkDuplicates After buildSortedReadEndLists freeMemory: 204142952; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:35:17 MarkDuplicates Will retain up to 1987051520 duplicate indices before spilling to disk.
INFO 2026-06-08 09:35:28 MarkDuplicates Traversing read pair information and detecting duplicates.
WARNING 2026-06-08 09:35:28 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 09:35:47 OpticalDuplicateFinder Large duplicate set. size = 1478
INFO 2026-06-08 09:35:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,145
INFO 2026-06-08 09:35:47 OpticalDuplicateFinder Large duplicate set. size = 1090
INFO 2026-06-08 09:35:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,278
INFO 2026-06-08 09:35:47 OpticalDuplicateFinder Large duplicate set. size = 1346
INFO 2026-06-08 09:35:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,326
INFO 2026-06-08 09:35:47 OpticalDuplicateFinder Large duplicate set. size = 1265
INFO 2026-06-08 09:35:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,646
INFO 2026-06-08 09:35:47 OpticalDuplicateFinder Large duplicate set. size = 1706
INFO 2026-06-08 09:35:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,379
INFO 2026-06-08 09:35:47 OpticalDuplicateFinder Large duplicate set. size = 1117
INFO 2026-06-08 09:35:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-13,658
INFO 2026-06-08 09:35:47 OpticalDuplicateFinder Large duplicate set. size = 1118
INFO 2026-06-08 09:35:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,194
INFO 2026-06-08 09:35:48 OpticalDuplicateFinder Large duplicate set. size = 1250
INFO 2026-06-08 09:35:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,932
INFO 2026-06-08 09:35:48 OpticalDuplicateFinder Large duplicate set. size = 1051
INFO 2026-06-08 09:35:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,137
INFO 2026-06-08 09:35:48 OpticalDuplicateFinder Large duplicate set. size = 1117
INFO 2026-06-08 09:35:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,230
INFO 2026-06-08 09:35:48 OpticalDuplicateFinder Large duplicate set. size = 1039
INFO 2026-06-08 09:35:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,722
INFO 2026-06-08 09:35:48 OpticalDuplicateFinder Large duplicate set. size = 1136
INFO 2026-06-08 09:35:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,189
INFO 2026-06-08 09:35:49 OpticalDuplicateFinder Large duplicate set. size = 1047
INFO 2026-06-08 09:35:49 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,189
INFO 2026-06-08 09:35:49 OpticalDuplicateFinder Large duplicate set. size = 1048
INFO 2026-06-08 09:35:49 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,855
INFO 2026-06-08 09:35:50 OpticalDuplicateFinder Large duplicate set. size = 1258
INFO 2026-06-08 09:35:50 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,293
INFO 2026-06-08 09:35:50 OpticalDuplicateFinder Large duplicate set. size = 1089
INFO 2026-06-08 09:35:50 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,610
INFO 2026-06-08 09:35:51 OpticalDuplicateFinder Large duplicate set. size = 1312
INFO 2026-06-08 09:35:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,852
INFO 2026-06-08 09:35:51 OpticalDuplicateFinder Large duplicate set. size = 1256
INFO 2026-06-08 09:35:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,325
INFO 2026-06-08 09:35:52 OpticalDuplicateFinder Large duplicate set. size = 1383
INFO 2026-06-08 09:35:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,061
INFO 2026-06-08 09:35:52 OpticalDuplicateFinder Large duplicate set. size = 1413
INFO 2026-06-08 09:35:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,888
INFO 2026-06-08 09:35:52 OpticalDuplicateFinder Large duplicate set. size = 1258
INFO 2026-06-08 09:35:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,146
INFO 2026-06-08 09:35:52 OpticalDuplicateFinder Large duplicate set. size = 1020
INFO 2026-06-08 09:35:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,519
INFO 2026-06-08 09:35:52 OpticalDuplicateFinder Large duplicate set. size = 1103
INFO 2026-06-08 09:35:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,360
INFO 2026-06-08 09:35:52 OpticalDuplicateFinder Large duplicate set. size = 1059
INFO 2026-06-08 09:35:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,602
INFO 2026-06-08 09:35:52 OpticalDuplicateFinder Large duplicate set. size = 1412
INFO 2026-06-08 09:35:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,084
INFO 2026-06-08 09:36:20 OpticalDuplicateFinder Large duplicate set. size = 1012
INFO 2026-06-08 09:36:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,442
INFO 2026-06-08 09:36:20 OpticalDuplicateFinder Large duplicate set. size = 1251
INFO 2026-06-08 09:36:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,537
INFO 2026-06-08 09:36:20 OpticalDuplicateFinder Large duplicate set. size = 1033
INFO 2026-06-08 09:36:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,519
INFO 2026-06-08 09:36:20 OpticalDuplicateFinder Large duplicate set. size = 1008
INFO 2026-06-08 09:36:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,220
INFO 2026-06-08 09:36:20 OpticalDuplicateFinder Large duplicate set. size = 1235
INFO 2026-06-08 09:36:20 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,091
INFO 2026-06-08 09:36:59 OpticalDuplicateFinder Large duplicate set. size = 1045
INFO 2026-06-08 09:36:59 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,058
INFO 2026-06-08 09:36:59 OpticalDuplicateFinder Large duplicate set. size = 1521
INFO 2026-06-08 09:36:59 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-13,448
INFO 2026-06-08 09:36:59 OpticalDuplicateFinder Large duplicate set. size = 1219
INFO 2026-06-08 09:36:59 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,812
INFO 2026-06-08 09:36:59 OpticalDuplicateFinder Large duplicate set. size = 1310
INFO 2026-06-08 09:36:59 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-13,828
INFO 2026-06-08 09:37:00 OpticalDuplicateFinder Large duplicate set. size = 1155
INFO 2026-06-08 09:37:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,082
INFO 2026-06-08 09:37:00 OpticalDuplicateFinder Large duplicate set. size = 1643
INFO 2026-06-08 09:37:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,351
INFO 2026-06-08 09:37:00 OpticalDuplicateFinder Large duplicate set. size = 1721
INFO 2026-06-08 09:37:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,696
INFO 2026-06-08 09:37:00 OpticalDuplicateFinder Large duplicate set. size = 1134
INFO 2026-06-08 09:37:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,177
INFO 2026-06-08 09:37:00 OpticalDuplicateFinder Large duplicate set. size = 1013
INFO 2026-06-08 09:37:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,911
INFO 2026-06-08 09:37:00 OpticalDuplicateFinder Large duplicate set. size = 1059
INFO 2026-06-08 09:37:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,371
INFO 2026-06-08 09:37:00 OpticalDuplicateFinder Large duplicate set. size = 1662
INFO 2026-06-08 09:37:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,394
INFO 2026-06-08 09:37:00 OpticalDuplicateFinder Large duplicate set. size = 1174
INFO 2026-06-08 09:37:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,533
INFO 2026-06-08 09:37:01 OpticalDuplicateFinder Large duplicate set. size = 1135
INFO 2026-06-08 09:37:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,417
INFO 2026-06-08 09:37:01 OpticalDuplicateFinder Large duplicate set. size = 1057
INFO 2026-06-08 09:37:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,808
INFO 2026-06-08 09:37:01 OpticalDuplicateFinder Large duplicate set. size = 1248
INFO 2026-06-08 09:37:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,963
INFO 2026-06-08 09:37:01 OpticalDuplicateFinder Large duplicate set. size = 1174
INFO 2026-06-08 09:37:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,856
INFO 2026-06-08 09:37:01 OpticalDuplicateFinder Large duplicate set. size = 1393
INFO 2026-06-08 09:37:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,649
INFO 2026-06-08 09:37:01 OpticalDuplicateFinder Large duplicate set. size = 1028
INFO 2026-06-08 09:37:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,001
INFO 2026-06-08 09:37:01 OpticalDuplicateFinder Large duplicate set. size = 1349
INFO 2026-06-08 09:37:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,679
INFO 2026-06-08 09:37:01 OpticalDuplicateFinder Large duplicate set. size = 1180
INFO 2026-06-08 09:37:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,417
INFO 2026-06-08 09:37:01 OpticalDuplicateFinder Large duplicate set. size = 1250
INFO 2026-06-08 09:37:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,906
INFO 2026-06-08 09:37:01 OpticalDuplicateFinder Large duplicate set. size = 1352
INFO 2026-06-08 09:37:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,122
INFO 2026-06-08 09:37:01 OpticalDuplicateFinder Large duplicate set. size = 1121
INFO 2026-06-08 09:37:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,760
INFO 2026-06-08 09:37:01 OpticalDuplicateFinder Large duplicate set. size = 1267
INFO 2026-06-08 09:37:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,585
INFO 2026-06-08 09:37:01 OpticalDuplicateFinder Large duplicate set. size = 1853
INFO 2026-06-08 09:37:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,577
INFO 2026-06-08 09:37:01 OpticalDuplicateFinder Large duplicate set. size = 1377
INFO 2026-06-08 09:37:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,452
INFO 2026-06-08 09:37:02 OpticalDuplicateFinder Large duplicate set. size = 1291
INFO 2026-06-08 09:37:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,680
INFO 2026-06-08 09:37:02 OpticalDuplicateFinder Large duplicate set. size = 1081
INFO 2026-06-08 09:37:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,110
INFO 2026-06-08 09:37:02 OpticalDuplicateFinder Large duplicate set. size = 1091
INFO 2026-06-08 09:37:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,782
INFO 2026-06-08 09:37:02 OpticalDuplicateFinder Large duplicate set. size = 1225
INFO 2026-06-08 09:37:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,646
INFO 2026-06-08 09:37:02 OpticalDuplicateFinder Large duplicate set. size = 1040
INFO 2026-06-08 09:37:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,563
INFO 2026-06-08 09:37:02 OpticalDuplicateFinder Large duplicate set. size = 1850
INFO 2026-06-08 09:37:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,996
INFO 2026-06-08 09:37:02 OpticalDuplicateFinder Large duplicate set. size = 1143
INFO 2026-06-08 09:37:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,472
INFO 2026-06-08 09:37:02 OpticalDuplicateFinder Large duplicate set. size = 1101
INFO 2026-06-08 09:37:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,521
INFO 2026-06-08 09:37:02 OpticalDuplicateFinder Large duplicate set. size = 1217
INFO 2026-06-08 09:37:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,346
INFO 2026-06-08 09:37:02 OpticalDuplicateFinder Large duplicate set. size = 1451
INFO 2026-06-08 09:37:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,681
INFO 2026-06-08 09:37:02 OpticalDuplicateFinder Large duplicate set. size = 1492
INFO 2026-06-08 09:37:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,580
INFO 2026-06-08 09:37:02 OpticalDuplicateFinder Large duplicate set. size = 1079
INFO 2026-06-08 09:37:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,333
INFO 2026-06-08 09:37:02 OpticalDuplicateFinder Large duplicate set. size = 1509
INFO 2026-06-08 09:37:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,264
INFO 2026-06-08 09:37:02 OpticalDuplicateFinder Large duplicate set. size = 1010
INFO 2026-06-08 09:37:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,226
INFO 2026-06-08 09:37:02 OpticalDuplicateFinder Large duplicate set. size = 1442
INFO 2026-06-08 09:37:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,749
INFO 2026-06-08 09:37:02 OpticalDuplicateFinder Large duplicate set. size = 1030
INFO 2026-06-08 09:37:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,771
INFO 2026-06-08 09:37:02 OpticalDuplicateFinder Large duplicate set. size = 1016
INFO 2026-06-08 09:37:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,002
INFO 2026-06-08 09:37:02 OpticalDuplicateFinder Large duplicate set. size = 1090
INFO 2026-06-08 09:37:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,404
INFO 2026-06-08 09:37:02 OpticalDuplicateFinder Large duplicate set. size = 1426
INFO 2026-06-08 09:37:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,145
INFO 2026-06-08 09:37:02 OpticalDuplicateFinder Large duplicate set. size = 1818
INFO 2026-06-08 09:37:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,837
INFO 2026-06-08 09:37:02 OpticalDuplicateFinder Large duplicate set. size = 1949
INFO 2026-06-08 09:37:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,662
INFO 2026-06-08 09:37:03 OpticalDuplicateFinder Large duplicate set. size = 1782
INFO 2026-06-08 09:37:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,291
INFO 2026-06-08 09:37:03 OpticalDuplicateFinder Large duplicate set. size = 1703
INFO 2026-06-08 09:37:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,606
INFO 2026-06-08 09:37:03 OpticalDuplicateFinder Large duplicate set. size = 2523
INFO 2026-06-08 09:37:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,523
INFO 2026-06-08 09:37:03 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,173
INFO 2026-06-08 09:37:03 OpticalDuplicateFinder Large duplicate set. size = 1091
INFO 2026-06-08 09:37:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,799
INFO 2026-06-08 09:37:03 OpticalDuplicateFinder Large duplicate set. size = 1189
INFO 2026-06-08 09:37:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,857
INFO 2026-06-08 09:37:04 OpticalDuplicateFinder Large duplicate set. size = 1419
INFO 2026-06-08 09:37:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,269
INFO 2026-06-08 09:37:04 OpticalDuplicateFinder Large duplicate set. size = 1384
INFO 2026-06-08 09:37:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,736
INFO 2026-06-08 09:37:04 OpticalDuplicateFinder Large duplicate set. size = 1657
INFO 2026-06-08 09:37:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,306
INFO 2026-06-08 09:37:04 OpticalDuplicateFinder Large duplicate set. size = 1774
INFO 2026-06-08 09:37:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,267
INFO 2026-06-08 09:37:04 OpticalDuplicateFinder Large duplicate set. size = 2686
INFO 2026-06-08 09:37:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,681
INFO 2026-06-08 09:37:04 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,684
INFO 2026-06-08 09:37:04 OpticalDuplicateFinder Large duplicate set. size = 1513
INFO 2026-06-08 09:37:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,204
INFO 2026-06-08 09:37:04 OpticalDuplicateFinder Large duplicate set. size = 1571
INFO 2026-06-08 09:37:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,342
INFO 2026-06-08 09:37:04 OpticalDuplicateFinder Large duplicate set. size = 1365
INFO 2026-06-08 09:37:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,045
INFO 2026-06-08 09:37:04 OpticalDuplicateFinder Large duplicate set. size = 1013
INFO 2026-06-08 09:37:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,767
INFO 2026-06-08 09:37:04 OpticalDuplicateFinder Large duplicate set. size = 1039
INFO 2026-06-08 09:37:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,354
INFO 2026-06-08 09:37:04 OpticalDuplicateFinder Large duplicate set. size = 1440
INFO 2026-06-08 09:37:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,961
INFO 2026-06-08 09:37:04 OpticalDuplicateFinder Large duplicate set. size = 2459
INFO 2026-06-08 09:37:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,689
INFO 2026-06-08 09:37:04 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,897
INFO 2026-06-08 09:37:04 OpticalDuplicateFinder Large duplicate set. size = 1369
INFO 2026-06-08 09:37:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,359
INFO 2026-06-08 09:37:04 OpticalDuplicateFinder Large duplicate set. size = 1129
INFO 2026-06-08 09:37:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,672
INFO 2026-06-08 09:37:04 OpticalDuplicateFinder Large duplicate set. size = 1206
INFO 2026-06-08 09:37:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,349
INFO 2026-06-08 09:37:04 OpticalDuplicateFinder Large duplicate set. size = 1065
INFO 2026-06-08 09:37:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,683
INFO 2026-06-08 09:37:04 OpticalDuplicateFinder Large duplicate set. size = 1195
INFO 2026-06-08 09:37:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,311
INFO 2026-06-08 09:37:04 OpticalDuplicateFinder Large duplicate set. size = 1513
INFO 2026-06-08 09:37:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,308
INFO 2026-06-08 09:37:04 OpticalDuplicateFinder Large duplicate set. size = 1018
INFO 2026-06-08 09:37:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,222
INFO 2026-06-08 09:37:04 OpticalDuplicateFinder Large duplicate set. size = 1040
INFO 2026-06-08 09:37:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,680
INFO 2026-06-08 09:37:04 OpticalDuplicateFinder Large duplicate set. size = 1373
INFO 2026-06-08 09:37:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,102
INFO 2026-06-08 09:37:04 OpticalDuplicateFinder Large duplicate set. size = 1159
INFO 2026-06-08 09:37:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,607
INFO 2026-06-08 09:37:04 OpticalDuplicateFinder Large duplicate set. size = 1201
INFO 2026-06-08 09:37:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,023
INFO 2026-06-08 09:37:04 OpticalDuplicateFinder Large duplicate set. size = 1076
INFO 2026-06-08 09:37:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,329
INFO 2026-06-08 09:37:04 OpticalDuplicateFinder Large duplicate set. size = 2258
INFO 2026-06-08 09:37:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,794
INFO 2026-06-08 09:37:04 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,945
INFO 2026-06-08 09:37:04 OpticalDuplicateFinder Large duplicate set. size = 1378
INFO 2026-06-08 09:37:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,997
INFO 2026-06-08 09:37:04 OpticalDuplicateFinder Large duplicate set. size = 1156
INFO 2026-06-08 09:37:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,321
INFO 2026-06-08 09:37:04 OpticalDuplicateFinder Large duplicate set. size = 1364
INFO 2026-06-08 09:37:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,156
INFO 2026-06-08 09:37:05 OpticalDuplicateFinder Large duplicate set. size = 1105
INFO 2026-06-08 09:37:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,676
INFO 2026-06-08 09:37:05 OpticalDuplicateFinder Large duplicate set. size = 1352
INFO 2026-06-08 09:37:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,594
INFO 2026-06-08 09:37:19 MarkDuplicates Traversing fragment information and detecting duplicates.
WARNING 2026-06-08 09:37:19 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 09:38:19 MarkDuplicates Sorting list of duplicate records.
INFO 2026-06-08 09:38:26 MarkDuplicates After generateDuplicateIndexes freeMemory: 203900800; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:38:26 MarkDuplicates Marking 398434394 records as duplicates.
INFO 2026-06-08 09:38:26 MarkDuplicates Found 14394686 optical duplicate clusters.
INFO 2026-06-08 09:38:26 MarkDuplicates Reads are assumed to be ordered by: coordinate
INFO 2026-06-08 09:38:46 MarkDuplicates Written 10,000,000 records. Elapsed time: 00:00:19s. Time for last 10,000,000: 19s. Last read position: chr1:21,721,607
INFO 2026-06-08 09:39:02 MarkDuplicates Written 20,000,000 records. Elapsed time: 00:00:35s. Time for last 10,000,000: 15s. Last read position: chr1:40,749,617
INFO 2026-06-08 09:39:18 MarkDuplicates Written 30,000,000 records. Elapsed time: 00:00:51s. Time for last 10,000,000: 16s. Last read position: chr1:109,488,440
INFO 2026-06-08 09:39:35 MarkDuplicates Written 40,000,000 records. Elapsed time: 00:01:08s. Time for last 10,000,000: 16s. Last read position: chr1:150,266,548
INFO 2026-06-08 09:39:52 MarkDuplicates Written 50,000,000 records. Elapsed time: 00:01:25s. Time for last 10,000,000: 17s. Last read position: chr1:156,874,963
INFO 2026-06-08 09:40:12 MarkDuplicates Written 60,000,000 records. Elapsed time: 00:01:45s. Time for last 10,000,000: 19s. Last read position: chr1:186,338,046
INFO 2026-06-08 09:40:34 MarkDuplicates Written 70,000,000 records. Elapsed time: 00:02:07s. Time for last 10,000,000: 21s. Last read position: chr1:243,165,151
INFO 2026-06-08 09:40:52 MarkDuplicates Written 80,000,000 records. Elapsed time: 00:02:25s. Time for last 10,000,000: 18s. Last read position: chr2:32,916,406
INFO 2026-06-08 09:41:11 MarkDuplicates Written 90,000,000 records. Elapsed time: 00:02:44s. Time for last 10,000,000: 18s. Last read position: chr2:101,885,231
INFO 2026-06-08 09:41:26 MarkDuplicates Written 100,000,000 records. Elapsed time: 00:02:59s. Time for last 10,000,000: 15s. Last read position: chr2:187,503,700
INFO 2026-06-08 09:41:41 MarkDuplicates Written 110,000,000 records. Elapsed time: 00:03:14s. Time for last 10,000,000: 15s. Last read position: chr2:215,367,901
INFO 2026-06-08 09:41:57 MarkDuplicates Written 120,000,000 records. Elapsed time: 00:03:30s. Time for last 10,000,000: 15s. Last read position: chr2:215,404,650
INFO 2026-06-08 09:42:12 MarkDuplicates Written 130,000,000 records. Elapsed time: 00:03:45s. Time for last 10,000,000: 15s. Last read position: chr2:219,182,410
INFO 2026-06-08 09:42:27 MarkDuplicates Written 140,000,000 records. Elapsed time: 00:04:00s. Time for last 10,000,000: 15s. Last read position: chr3:5,170,506
INFO 2026-06-08 09:42:43 MarkDuplicates Written 150,000,000 records. Elapsed time: 00:04:16s. Time for last 10,000,000: 15s. Last read position: chr3:52,520,032
INFO 2026-06-08 09:42:58 MarkDuplicates Written 160,000,000 records. Elapsed time: 00:04:31s. Time for last 10,000,000: 15s. Last read position: chr3:132,721,996
INFO 2026-06-08 09:43:13 MarkDuplicates Written 170,000,000 records. Elapsed time: 00:04:46s. Time for last 10,000,000: 15s. Last read position: chr4:13,600,065
INFO 2026-06-08 09:43:29 MarkDuplicates Written 180,000,000 records. Elapsed time: 00:05:02s. Time for last 10,000,000: 15s. Last read position: chr4:168,285,393
INFO 2026-06-08 09:43:45 MarkDuplicates Written 190,000,000 records. Elapsed time: 00:05:18s. Time for last 10,000,000: 15s. Last read position: chr5:80,076,855
INFO 2026-06-08 09:44:00 MarkDuplicates Written 200,000,000 records. Elapsed time: 00:05:33s. Time for last 10,000,000: 15s. Last read position: chr5:150,117,733
INFO 2026-06-08 09:44:16 MarkDuplicates Written 210,000,000 records. Elapsed time: 00:05:49s. Time for last 10,000,000: 15s. Last read position: chr5:179,833,073
INFO 2026-06-08 09:44:31 MarkDuplicates Written 220,000,000 records. Elapsed time: 00:06:04s. Time for last 10,000,000: 15s. Last read position: chr6:31,828,820
INFO 2026-06-08 09:44:46 MarkDuplicates Written 230,000,000 records. Elapsed time: 00:06:19s. Time for last 10,000,000: 15s. Last read position: chr6:85,572,187
INFO 2026-06-08 09:45:01 MarkDuplicates Written 240,000,000 records. Elapsed time: 00:06:34s. Time for last 10,000,000: 15s. Last read position: chr7:20,874
INFO 2026-06-08 09:45:17 MarkDuplicates Written 250,000,000 records. Elapsed time: 00:06:50s. Time for last 10,000,000: 15s. Last read position: chr7:44,003,787
INFO 2026-06-08 09:45:32 MarkDuplicates Written 260,000,000 records. Elapsed time: 00:07:05s. Time for last 10,000,000: 15s. Last read position: chr7:94,430,264
INFO 2026-06-08 09:45:47 MarkDuplicates Written 270,000,000 records. Elapsed time: 00:07:20s. Time for last 10,000,000: 15s. Last read position: chr7:149,250,467
INFO 2026-06-08 09:46:02 MarkDuplicates Written 280,000,000 records. Elapsed time: 00:07:35s. Time for last 10,000,000: 15s. Last read position: chr8:47,927,297
INFO 2026-06-08 09:46:18 MarkDuplicates Written 290,000,000 records. Elapsed time: 00:07:51s. Time for last 10,000,000: 15s. Last read position: chr8:143,991,975
INFO 2026-06-08 09:46:34 MarkDuplicates Written 300,000,000 records. Elapsed time: 00:08:07s. Time for last 10,000,000: 16s. Last read position: chr9:121,356,053
INFO 2026-06-08 09:46:54 MarkDuplicates Written 310,000,000 records. Elapsed time: 00:08:27s. Time for last 10,000,000: 19s. Last read position: chr10:27,077,345
INFO 2026-06-08 09:47:11 MarkDuplicates Written 320,000,000 records. Elapsed time: 00:08:44s. Time for last 10,000,000: 16s. Last read position: chr10:125,725,399
INFO 2026-06-08 09:47:32 MarkDuplicates Written 330,000,000 records. Elapsed time: 00:09:05s. Time for last 10,000,000: 21s. Last read position: chr11:34,076,394
INFO 2026-06-08 09:47:51 MarkDuplicates Written 340,000,000 records. Elapsed time: 00:09:24s. Time for last 10,000,000: 18s. Last read position: chr11:66,315,686
INFO 2026-06-08 09:48:06 MarkDuplicates Written 350,000,000 records. Elapsed time: 00:09:39s. Time for last 10,000,000: 14s. Last read position: chr11:119,051,570
INFO 2026-06-08 09:48:20 MarkDuplicates Written 360,000,000 records. Elapsed time: 00:09:53s. Time for last 10,000,000: 14s. Last read position: chr12:20,449,832
INFO 2026-06-08 09:48:35 MarkDuplicates Written 370,000,000 records. Elapsed time: 00:10:08s. Time for last 10,000,000: 14s. Last read position: chr12:55,725,586
INFO 2026-06-08 09:48:50 MarkDuplicates Written 380,000,000 records. Elapsed time: 00:10:23s. Time for last 10,000,000: 14s. Last read position: chr12:89,350,790
INFO 2026-06-08 09:49:05 MarkDuplicates Written 390,000,000 records. Elapsed time: 00:10:38s. Time for last 10,000,000: 15s. Last read position: chr12:124,346,758
INFO 2026-06-08 09:49:20 MarkDuplicates Written 400,000,000 records. Elapsed time: 00:10:53s. Time for last 10,000,000: 15s. Last read position: chr13:77,098,756
INFO 2026-06-08 09:49:35 MarkDuplicates Written 410,000,000 records. Elapsed time: 00:11:08s. Time for last 10,000,000: 15s. Last read position: chr14:50,419,957
INFO 2026-06-08 09:49:50 MarkDuplicates Written 420,000,000 records. Elapsed time: 00:11:23s. Time for last 10,000,000: 14s. Last read position: chr15:40,471,649
INFO 2026-06-08 09:50:05 MarkDuplicates Written 430,000,000 records. Elapsed time: 00:11:38s. Time for last 10,000,000: 14s. Last read position: chr15:74,035,637
INFO 2026-06-08 09:50:20 MarkDuplicates Written 440,000,000 records. Elapsed time: 00:11:53s. Time for last 10,000,000: 14s. Last read position: chr16:2,763,711
INFO 2026-06-08 09:50:37 MarkDuplicates Written 450,000,000 records. Elapsed time: 00:12:10s. Time for last 10,000,000: 17s. Last read position: chr16:28,713,703
INFO 2026-06-08 09:50:58 MarkDuplicates Written 460,000,000 records. Elapsed time: 00:12:31s. Time for last 10,000,000: 21s. Last read position: chr16:72,089,091
INFO 2026-06-08 09:51:13 MarkDuplicates Written 470,000,000 records. Elapsed time: 00:12:46s. Time for last 10,000,000: 15s. Last read position: chr17:7,894,934
INFO 2026-06-08 09:51:29 MarkDuplicates Written 480,000,000 records. Elapsed time: 00:13:02s. Time for last 10,000,000: 15s. Last read position: chr17:41,893,075
INFO 2026-06-08 09:51:44 MarkDuplicates Written 490,000,000 records. Elapsed time: 00:13:17s. Time for last 10,000,000: 15s. Last read position: chr17:50,188,542
INFO 2026-06-08 09:51:59 MarkDuplicates Written 500,000,000 records. Elapsed time: 00:13:32s. Time for last 10,000,000: 15s. Last read position: chr17:50,194,004
INFO 2026-06-08 09:52:14 MarkDuplicates Written 510,000,000 records. Elapsed time: 00:13:47s. Time for last 10,000,000: 15s. Last read position: chr17:50,199,290
INFO 2026-06-08 09:52:29 MarkDuplicates Written 520,000,000 records. Elapsed time: 00:14:02s. Time for last 10,000,000: 15s. Last read position: chr17:77,200,498
INFO 2026-06-08 09:52:44 MarkDuplicates Written 530,000,000 records. Elapsed time: 00:14:17s. Time for last 10,000,000: 15s. Last read position: chr18:62,291,577
INFO 2026-06-08 09:52:59 MarkDuplicates Written 540,000,000 records. Elapsed time: 00:14:32s. Time for last 10,000,000: 14s. Last read position: chr19:11,214,275
INFO 2026-06-08 09:53:14 MarkDuplicates Written 550,000,000 records. Elapsed time: 00:14:47s. Time for last 10,000,000: 15s. Last read position: chr19:33,090,819
INFO 2026-06-08 09:53:29 MarkDuplicates Written 560,000,000 records. Elapsed time: 00:15:02s. Time for last 10,000,000: 14s. Last read position: chr19:48,329,443
INFO 2026-06-08 09:53:44 MarkDuplicates Written 570,000,000 records. Elapsed time: 00:15:17s. Time for last 10,000,000: 14s. Last read position: chr20:17,659,743
INFO 2026-06-08 09:53:59 MarkDuplicates Written 580,000,000 records. Elapsed time: 00:15:32s. Time for last 10,000,000: 15s. Last read position: chr20:59,301,449
INFO 2026-06-08 09:54:14 MarkDuplicates Written 590,000,000 records. Elapsed time: 00:15:47s. Time for last 10,000,000: 14s. Last read position: chr21:46,003,415
INFO 2026-06-08 09:54:29 MarkDuplicates Written 600,000,000 records. Elapsed time: 00:16:02s. Time for last 10,000,000: 14s. Last read position: chr22:42,077,891
INFO 2026-06-08 09:54:44 MarkDuplicates Written 610,000,000 records. Elapsed time: 00:16:17s. Time for last 10,000,000: 15s. Last read position: chrX:53,431,994
INFO 2026-06-08 09:54:59 MarkDuplicates Written 620,000,000 records. Elapsed time: 00:16:32s. Time for last 10,000,000: 15s. Last read position: chrX:153,794,687
INFO 2026-06-08 09:55:12 MarkDuplicates Writing complete. Closing input iterator.
INFO 2026-06-08 09:55:12 MarkDuplicates Duplicate Index cleanup.
INFO 2026-06-08 09:55:12 MarkDuplicates Getting Memory Stats.
INFO 2026-06-08 09:55:12 MarkDuplicates Before output close freeMemory: 203840360; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:55:12 MarkDuplicates Closed outputs. Getting more Memory Stats.
INFO 2026-06-08 09:55:12 MarkDuplicates After output close freeMemory: 104095880; totalMemory: 134217728; maxMemory: 63585648640
[Mon Jun 08 09:55:12 GMT 2026] picard.sam.markduplicates.MarkDuplicates done. Elapsed time: 43.65 minutes.
Runtime.totalMemory()=134217728
ls: *cram: No such file or directory
ls: *.crai: No such file or directory