File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/aa/bd6cbbd5f28484d49df3b7a4150bb9/.command.log
Size
5.3 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (659_bNS-T1-TRNA-1_A23MVY2LT4_2)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6d/6376fe41d74b119e718c9299b548bc/659_bNS-T1-TRNA-1_A23MVY2LT4_2.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-bba2394f-ea06-4038-829e-f0bb41c45b0f/67/1d6e211d8f66f1c89f8ec9083ff96d/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/aa/bd6cbbd5f28484d49df3b7a4150bb9/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/aa/bd6cbbd5f28484d49df3b7a4150bb9/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/68/e6754737b12fb16637eb2f2c397c09/659_bNS-T1-TRNA-1_A23MVY2LT4_2.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
==> STAGING COMPLETE (6 inputs)

Running application...
EML4--ALK
starfusion
arriba
SNTB2--TANGO6
starfusion
arriba
TLK2P1--AC110079.1
starfusion
TLK2--AC240565.1
starfusion
PCDHGB2--PCDHGC4
arriba
PCDHGB2--PCDHGA8
arriba
PCDHGB2--PCDHGC5
arriba
PCDHGB2--PCDHGA10
arriba
PCDHGB2--PCDHGA11
arriba
PCDHGB2--PCDHGB6
arriba
PCDHGB2--PCDHGA12
arriba
PCDHGB2--PCDHGB7
arriba
PCDHGB2--PCDHGA9
arriba
PCDHGB2--PCDHGC3
arriba
IGFL1P2--HIF3A
arriba
TVP23C--CDRT4
arriba
PCDHA6--PCDHAC1
arriba
PCDHA6--PCDHAC2
arriba
PCDHA6--PCDHA13
arriba
MMP25--AC108134.3
arriba
KLRC4--KLRK1
arriba
CRYZL2P--SEC16B
arriba

  0%|          | 0/22 [00:00<?, ?it/s]
Processing EML4--ALK:   0%|          | 0/22 [00:00<?, ?it/s]
Processing EML4--ALK:   5%|▍         | 1/22 [00:00<00:02,  9.22it/s]
Processing SNTB2--TANGO6:   5%|▍         | 1/22 [00:00<00:02,  9.22it/s]
Processing SNTB2--TANGO6:   9%|▉         | 2/22 [00:00<00:02,  9.46it/s]
Processing TLK2P1--AC110079.1:   9%|▉         | 2/22 [00:00<00:02,  9.46it/s]
Processing TLK2P1--AC110079.1:  14%|█▎        | 3/22 [00:00<00:01,  9.55it/s]
Processing TLK2--AC240565.1:  14%|█▎        | 3/22 [00:00<00:01,  9.55it/s]  
Processing TLK2--AC240565.1:  18%|█▊        | 4/22 [00:00<00:01,  9.58it/s]
Processing PCDHGB2--PCDHGC4:  18%|█▊        | 4/22 [00:00<00:01,  9.58it/s]
Processing PCDHGB2--PCDHGC4:  23%|██▎       | 5/22 [00:00<00:01,  9.60it/s]
Processing PCDHGB2--PCDHGA8:  23%|██▎       | 5/22 [00:00<00:01,  9.60it/s]
Processing PCDHGB2--PCDHGA8:  27%|██▋       | 6/22 [00:00<00:01,  9.61it/s]
Processing PCDHGB2--PCDHGC5:  27%|██▋       | 6/22 [00:00<00:01,  9.61it/s]
Processing PCDHGB2--PCDHGC5:  32%|███▏      | 7/22 [00:00<00:01,  9.62it/s]
Processing PCDHGB2--PCDHGA10:  32%|███▏      | 7/22 [00:00<00:01,  9.62it/s]
Processing PCDHGB2--PCDHGA10:  36%|███▋      | 8/22 [00:00<00:01,  9.63it/s]
Processing PCDHGB2--PCDHGA11:  36%|███▋      | 8/22 [00:00<00:01,  9.63it/s]
Processing PCDHGB2--PCDHGA11:  41%|████      | 9/22 [00:00<00:01,  9.64it/s]
Processing PCDHGB2--PCDHGB6:  41%|████      | 9/22 [00:00<00:01,  9.64it/s] 
Processing PCDHGB2--PCDHGB6:  45%|████▌     | 10/22 [00:01<00:01,  9.64it/s]
Processing PCDHGB2--PCDHGA12:  45%|████▌     | 10/22 [00:01<00:01,  9.64it/s]
Processing PCDHGB2--PCDHGA12:  50%|█████     | 11/22 [00:01<00:01,  9.64it/s]
Processing PCDHGB2--PCDHGB7:  50%|█████     | 11/22 [00:01<00:01,  9.64it/s] 
Processing PCDHGB2--PCDHGB7:  55%|█████▍    | 12/22 [00:01<00:01,  9.64it/s]
Processing PCDHGB2--PCDHGA9:  55%|█████▍    | 12/22 [00:01<00:01,  9.64it/s]
Processing PCDHGB2--PCDHGA9:  59%|█████▉    | 13/22 [00:01<00:00,  9.64it/s]
Processing PCDHGB2--PCDHGC3:  59%|█████▉    | 13/22 [00:01<00:00,  9.64it/s]
Processing PCDHGB2--PCDHGC3:  64%|██████▎   | 14/22 [00:01<00:00,  9.64it/s]
Processing IGFL1P2--HIF3A:  64%|██████▎   | 14/22 [00:01<00:00,  9.64it/s]  
Processing IGFL1P2--HIF3A:  68%|██████▊   | 15/22 [00:01<00:00,  9.64it/s]
Processing TVP23C--CDRT4:  68%|██████▊   | 15/22 [00:01<00:00,  9.64it/s] 
Processing TVP23C--CDRT4:  73%|███████▎  | 16/22 [00:01<00:00,  9.65it/s]
Processing PCDHA6--PCDHAC1:  73%|███████▎  | 16/22 [00:01<00:00,  9.65it/s]
Processing PCDHA6--PCDHAC1:  77%|███████▋  | 17/22 [00:01<00:00,  9.65it/s]
Processing PCDHA6--PCDHAC2:  77%|███████▋  | 17/22 [00:01<00:00,  9.65it/s]
Processing PCDHA6--PCDHAC2:  82%|████████▏ | 18/22 [00:01<00:00,  9.64it/s]
Processing PCDHA6--PCDHA13:  82%|████████▏ | 18/22 [00:01<00:00,  9.64it/s]
Processing PCDHA6--PCDHA13:  86%|████████▋ | 19/22 [00:01<00:00,  9.64it/s]
Processing MMP25--AC108134.3:  86%|████████▋ | 19/22 [00:01<00:00,  9.64it/s]
Processing MMP25--AC108134.3:  91%|█████████ | 20/22 [00:02<00:00,  9.64it/s]
Processing KLRC4--KLRK1:  91%|█████████ | 20/22 [00:02<00:00,  9.64it/s]     
Processing KLRC4--KLRK1:  95%|█████████▌| 21/22 [00:02<00:00,  9.64it/s]
Processing CRYZL2P--SEC16B:  95%|█████████▌| 21/22 [00:02<00:00,  9.64it/s]
Processing CRYZL2P--SEC16B: 100%|██████████| 22/22 [00:02<00:00,  9.65it/s]
Processing CRYZL2P--SEC16B: 100%|██████████| 22/22 [00:02<00:00,  9.62it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory