File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3b/9893c9525c2d41c6e60673cf7814b6/.command.log
Size
93.5 KB
Attempt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0d/08673ee12ee6a0211e830547e14205/659_bCu-T1-TRNA-1_A23MVY2LT4_1.Chimeric.out.junction
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/12/9e7d99434f98cb882688d235fee61f/659_bCu-T1-TRNA-1_A23MVY2LT4_1_2.fastp.fastq.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3b/9893c9525c2d41c6e60673cf7814b6/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/12/9e7d99434f98cb882688d235fee61f/659_bCu-T1-TRNA-1_A23MVY2LT4_1_1.fastp.fastq.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3b/9893c9525c2d41c6e60673cf7814b6/.command.run
==> STAGING COMPLETE (6 inputs)

-ctat genome lib [/tmp/nxf.yOP1RrduOk/ctat_genome_lib_build_dir] validates.
CMD: mkdir -p /tmp/nxf.yOP1RrduOk/./_starF_checkpoints
CMD: mkdir -p /tmp/nxf.yOP1RrduOk/./star-fusion.preliminary
-sample contains 241392050 rnaseq fragments
* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.map_chimeric_reads_to_genes  --genome_lib_dir /tmp/nxf.yOP1RrduOk/ctat_genome_lib_build_dir  -J /tmp/nxf.yOP1RrduOk/659_bCu-T1-TRNA-1_A23MVY2LT4_1.Chimeric.out.junction  -O /tmp/nxf.yOP1RrduOk/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt --CPU 4 
-parsing fusion evidence: /tmp/nxf.yOP1RrduOk/659_bCu-T1-TRNA-1_A23MVY2LT4_1.Chimeric.out.junction
-building interval tree based on /tmp/nxf.yOP1RrduOk/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.08 min).
-mapping reads to genes

[10000], rate=40000.00/min 
[20000], rate=60000.00/min 
[30000], rate=64285.71/min 
[40000], rate=45283.02/min 
[50000], rate=30000.00/min 
[60000], rate=24489.80/min 
[70000], rate=21538.46/min 
[80000], rate=19917.01/min 
[90000], rate=19081.27/min 
[100000], rate=18348.62/min 
[110000], rate=18487.39/min 
[120000], rate=18556.70/min 
[130000], rate=19259.26/min 
[140000], rate=19266.06/min 
[150000], rate=19189.77/min 
[160000], rate=19875.78/min 
[170000], rate=20689.66/min 
[180000], rate=21513.94/min 
[190000], rate=22352.94/min 
[200000], rate=23121.39/min 
[210000], rate=23908.92/min 
[220000], rate=24672.90/min 
[230000], rate=25321.10/min 
[240000], rate=25577.26/min 
[250000], rate=25728.99/min 
[260000], rate=26043.41/min 
[270000], rate=25632.91/min 
[280000], rate=25688.07/min 
[290000], rate=26008.97/min 
[300000], rate=26354.32/min 
[310000], rate=26420.45/min 
[320000], rate=25806.45/min 
[330000], rate=25950.20/min 
[340000], rate=26288.66/min 
[350000], rate=26250.00/min 
[360000], rate=26600.99/min 
[370000], rate=26909.09/min 
[380000], rate=26760.56/min 
[390000], rate=26989.62/min 
[400000], rate=27303.75/min 
[410000], rate=27609.43/min 
[420000], rate=27937.92/min 
[430000], rate=28289.47/min 
[440000], rate=28695.65/min 
[450000], rate=29032.26/min 
[460000], rate=29455.71/min 
[470000], rate=29841.27/min 
[480000], rate=30283.91/min 
[490000], rate=30688.94/min 
[500000], rate=30991.74/min 
[510000], rate=31352.46/min 
[520000], rate=31707.32/min 
[530000], rate=32056.45/min 
[540000], rate=32432.43/min 
[550000], rate=32770.61/min 
[560000], rate=33103.45/min 
[570000], rate=32947.98/min 
[580000], rate=33174.45/min 
[590000], rate=33554.50/min 
[600000], rate=33898.31/min 
[610000], rate=34269.66/min 
[620000], rate=34636.87/min 
[630000], rate=34967.62/min 
[640000], rate=35359.12/min 
[650000], rate=35714.29/min 
[660000], rate=36098.45/min 
[670000], rate=36086.18/min 
[680000], rate=36106.19/min 
[690000], rate=36125.65/min 
[700000], rate=36175.71/min 
[710000], rate=36224.49/min 
[720000], rate=36363.64/min 
[730000], rate=36378.74/min 
[740000], rate=36483.16/min 
[750000], rate=36555.65/min 
[760000], rate=36626.51/min 
[770000], rate=36695.79/min 
[780000], rate=36792.45/min 
[790000], rate=36887.16/min 
[800000], rate=36979.97/min 
[810000], rate=37042.68/min 
[820000], rate=37104.07/min 
[830000], rate=37191.93/min 
[840000], rate=37250.55/min 
[850000], rate=37307.97/min 
[860000], rate=37445.57/min 
[870000], rate=37553.96/min 
[880000], rate=37660.49/min 
[890000], rate=37765.21/min 
[900000], rate=37868.16/min 
[910000], rate=38022.28/min 
[920000], rate=38147.89/min 
[930000], rate=38297.87/min 
[940000], rate=38472.03/min 
[950000], rate=38644.07/min 
[960000], rate=38840.19/min 
[970000], rate=39112.90/min 
[980000], rate=39331.10/min 
[990000], rate=39520.96/min 
[1000000], rate=39735.10/min 
[1010000], rate=39947.26/min 
[1020000], rate=40183.85/min 
[1030000], rate=40392.16/min 
[1040000], rate=40598.57/min 
[1050000], rate=40829.55/min 
[1060000], rate=41058.75/min 
[1070000], rate=41286.17/min 
[1080000], rate=41326.53/min 
[1090000], rate=41157.96/min 
[1100000], rate=41019.27/min 
[1110000], rate=40808.82/min 
[1120000], rate=40702.60/min 
[1130000], rate=40671.87/min 
[1140000], rate=40665.87/min 
[1150000], rate=40659.99/min 
[1160000], rate=40677.97/min 
[1170000], rate=40719.26/min 
[1180000], rate=40759.93/min 
[1190000], rate=40823.33/min 
[1200000], rate=40909.09/min 
[1210000], rate=40970.65/min 
[1220000], rate=41008.40/min 
[1230000], rate=40931.78/min 
[1240000], rate=40969.16/min 
[1250000], rate=41028.45/min 
[1260000], rate=41109.30/min 
[1270000], rate=41189.19/min 
[1280000], rate=41268.14/min 
[1290000], rate=41280.00/min 
[1300000], rate=41335.45/min 
[1310000], rate=41412.01/min 
[1320000], rate=41552.99/min 
[1330000], rate=41649.27/min 
[1340000], rate=41787.94/min 
[1350000], rate=41925.47/min 
[1360000], rate=42040.19/min 
[1370000], rate=42175.47/min 
[1380000], rate=42309.66/min 
[1390000], rate=42464.36/min 
[1400000], rate=42574.76/min 
[1410000], rate=42684.16/min 
[1420000], rate=42814.07/min 
[1430000], rate=42964.45/min 
[1440000], rate=43113.77/min 
[1450000], rate=43240.56/min 
[1460000], rate=43430.84/min 
[1470000], rate=43577.08/min 
[1480000], rate=43743.84/min 
[1490000], rate=43909.63/min 
[1500000], rate=44096.03/min 
[1510000], rate=44238.28/min 
[1520000], rate=44401.17/min 
[1530000], rate=44584.75/min 
[1540000], rate=44680.85/min 
[1550000], rate=44604.32/min 
[1560000], rate=44613.92/min 
[1570000], rate=44623.40/min 
[1580000], rate=44590.78/min 
[1590000], rate=44621.14/min 
[1600000], rate=44609.67/min 
[1610000], rate=44618.94/min 
[1620000], rate=44669.12/min 
[1630000], rate=44718.79/min 
[1640000], rate=44747.61/min 
[1650000], rate=44796.38/min 
[1660000], rate=44844.66/min 
[1670000], rate=44892.47/min 
[1680000], rate=44979.92/min 
[1690000], rate=45066.67/min 
[1700000], rate=45132.74/min 
[1710000], rate=45238.10/min 
[1720000], rate=45322.79/min 
[1730000], rate=45466.49/min 
[1740000], rate=45569.62/min 
[1750000], rate=45691.91/min 
[1760000], rate=45833.33/min 
[1770000], rate=45993.94/min 
[1780000], rate=46133.91/min 
[1790000], rate=46273.16/min 
[1800000], rate=46451.61/min 
[1810000], rate=46589.45/min 
[1820000], rate=46746.58/min 
[1830000], rate=46883.01/min 
[1840000], rate=47038.77/min 
[1850000], rate=47173.82/min 
[1860000], rate=47288.14/min 
[1870000], rate=47301.85/min 
[1880000], rate=47335.29/min 
[1890000], rate=47348.64/min 
[1900000], rate=47381.55/min 
[1910000], rate=47394.54/min 
[1920000], rate=47446.46/min 
[1930000], rate=47536.95/min 
[1940000], rate=47646.34/min 
[1950000], rate=47696.70/min 
[1960000], rate=47766.04/min 
[1970000], rate=47834.88/min 
[1980000], rate=47922.55/min 
[1990000], rate=48028.96/min 
[2000000], rate=48115.48/min 
[2010000], rate=48220.71/min 
[2020000], rate=48344.64/min 
[2030000], rate=48448.69/min 
[2040000], rate=48552.16/min 
[2050000], rate=48674.32/min 
[2060000], rate=48757.40/min 
[2070000], rate=48878.39/min 
[2080000], rate=48979.59/min 
[2090000], rate=49080.23/min 
[2100000], rate=49199.53/min 
[2110000], rate=49337.49/min 
[2120000], rate=49552.01/min 
[2130000], rate=49708.28/min 
[2140000], rate=49825.38/min 
[2150000], rate=49961.27/min 
[2160000], rate=50077.28/min 
[2170000], rate=50192.75/min 
[2180000], rate=50327.05/min 
[2190000], rate=50441.46/min 
[2200000], rate=50555.34/min 
[2210000], rate=50688.07/min 
[2220000], rate=50704.23/min 
[2230000], rate=50739.48/min 
[2240000], rate=50793.65/min 
[2250000], rate=50847.46/min 
[2260000], rate=50920.02/min 
[2270000], rate=50973.05/min 
[2280000], rate=51025.74/min 
[2290000], rate=51097.06/min 
[2300000], rate=51186.94/min 
[2310000], rate=51257.40/min 
[2320000], rate=51346.37/min 
[2330000], rate=51415.96/min 
[2340000], rate=51522.94/min 
[2350000], rate=51610.54/min 
[2360000], rate=51716.58/min 
[2370000], rate=51841.05/min 
[2380000], rate=51946.16/min 
[2390000], rate=52050.82/min 
[2400000], rate=52192.82/min 
[2410000], rate=52353.37/min 
[2420000], rate=52475.61/min 
[2430000], rate=52578.43/min 
[2440000], rate=52680.82/min 
[2450000], rate=52820.70/min 
[2460000], rate=52941.18/min -building interval tree based on /tmp/nxf.yOP1RrduOk/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.08 min).
-mapping reads to genes

[10000], rate=12244.90/min 
[20000], rate=13953.49/min 
[30000], rate=15000.00/min 
[40000], rate=16326.53/min 
[50000], rate=15384.62/min 
[60000], rate=15126.05/min 
[70000], rate=15053.76/min 
[80000], rate=15789.47/min 
[90000], rate=16119.40/min 
[100000], rate=16806.72/min 
[110000], rate=17741.94/min 
[120000], rate=18652.85/min 
[130000], rate=19402.99/min 
[140000], rate=20192.31/min 
[150000], rate=20930.23/min 
[160000], rate=21670.43/min 
[170000], rate=22319.47/min 
[180000], rate=22881.36/min 
[190000], rate=22983.87/min 
[200000], rate=23622.05/min 
[210000], rate=24277.46/min 
[220000], rate=24952.74/min 
[230000], rate=25508.32/min 
[240000], rate=26039.78/min 
[250000], rate=26548.67/min 
[260000], rate=27130.43/min 
[270000], rate=27882.96/min 
[280000], rate=28378.38/min 
[290000], rate=28903.65/min 
[300000], rate=29411.76/min 
[310000], rate=29523.81/min 
[320000], rate=28959.28/min 
[330000], rate=28489.21/min 
[340000], rate=29018.49/min 
[350000], rate=29619.18/min 
[360000], rate=29670.33/min 
[370000], rate=29919.14/min 
[380000], rate=30481.28/min 
[390000], rate=31158.46/min 
[400000], rate=31830.24/min 
[410000], rate=32368.42/min 
[420000], rate=32812.50/min 
[430000], rate=32782.72/min 
[440000], rate=32713.75/min 
[450000], rate=32687.65/min 
[460000], rate=32740.21/min 
[470000], rate=32790.70/min 
[480000], rate=32727.27/min 
[490000], rate=32885.91/min 
[500000], rate=33149.17/min 
[510000], rate=33515.88/min 
[520000], rate=33876.22/min 
[530000], rate=34193.55/min 
[540000], rate=34285.71/min 
[550000], rate=34232.37/min 
[560000], rate=33870.97/min 
[570000], rate=33861.39/min 
[580000], rate=33918.13/min 
[590000], rate=33650.19/min 
[600000], rate=33707.87/min 
[610000], rate=33732.72/min 
[620000], rate=33243.97/min 
[630000], rate=32586.21/min 
[640000], rate=31973.36/min 
[650000], rate=31477.00/min 
[660000], rate=31132.08/min 
[670000], rate=31235.43/min 
[680000], rate=31336.41/min 
[690000], rate=31411.23/min 
[700000], rate=31555.22/min 
[710000], rate=31602.37/min 
[720000], rate=31625.18/min 
[730000], rate=31716.15/min 
[740000], rate=31873.65/min 
[750000], rate=32028.47/min 
[760000], rate=32180.66/min 
[770000], rate=32330.30/min 
[780000], rate=32454.92/min 
[790000], rate=32599.72/min 
[800000], rate=32719.84/min 
[810000], rate=32904.54/min 
[820000], rate=33042.31/min 
[830000], rate=33244.33/min 
[840000], rate=33421.75/min 
[850000], rate=33596.84/min 
[860000], rate=33769.63/min 
[870000], rate=33962.26/min 
[880000], rate=34174.76/min 
[890000], rate=34407.22/min 
[900000], rate=34615.38/min 
[910000], rate=34843.65/min 
[920000], rate=35047.62/min 
[930000], rate=35271.81/min 
[940000], rate=35494.02/min 
[950000], rate=35714.29/min 
[960000], rate=35910.22/min 
[970000], rate=36126.63/min 
[980000], rate=36318.72/min 
[990000], rate=36531.37/min 
[1000000], rate=36742.19/min 
[1010000], rate=36973.76/min 
[1020000], rate=37181.04/min 
[1030000], rate=37386.57/min 
[1040000], rate=37613.02/min 
[1050000], rate=37724.55/min 
[1060000], rate=37812.13/min 
[1070000], rate=37898.47/min 
[1080000], rate=38028.17/min 
[1090000], rate=38156.36/min 
[1100000], rate=38305.28/min 
[1110000], rate=38452.66/min 
[1120000], rate=38598.51/min 
[1130000], rate=38742.86/min 
[1140000], rate=38929.99/min 
[1150000], rate=39093.48/min 
[1160000], rate=39277.65/min 
[1170000], rate=39438.20/min 
[1180000], rate=39619.47/min 
[1190000], rate=39821.53/min 
[1200000], rate=40000.00/min 
[1210000], rate=40177.09/min 
[1220000], rate=40375.07/min 
[1230000], rate=40571.74/min 
[1240000], rate=40744.80/min 
[1250000], rate=40916.53/min 
[1260000], rate=41221.37/min 
[1270000], rate=41368.08/min 
[1280000], rate=41603.47/min 
[1290000], rate=41905.79/min 
[1300000], rate=42230.64/min 
[1310000], rate=42532.47/min 
[1320000], rate=42833.96/min 
[1330000], rate=42995.69/min 
[1340000], rate=43272.34/min 
[1350000], rate=43524.99/min 
[1360000], rate=43753.35/min 
[1370000], rate=43933.73/min 
[1380000], rate=44112.95/min 
[1390000], rate=44267.52/min 
[1400000], rate=44420.94/min 
[1410000], rate=44549.76/min 
[1420000], rate=44818.52/min 
[1430000], rate=44968.55/min 
[1440000], rate=45211.93/min 
[1450000], rate=45454.55/min 
[1460000], rate=45672.58/min 
[1470000], rate=45937.50/min 
[1480000], rate=46058.09/min 
[1490000], rate=46345.26/min 
[1500000], rate=46656.30/min 
[1510000], rate=46943.01/min 
[1520000], rate=47253.89/min 
[1530000], rate=47417.36/min 
[1540000], rate=47678.02/min 
[1550000], rate=47888.77/min 
[1560000], rate=48098.66/min 
[1570000], rate=48258.20/min 
[1580000], rate=48466.26/min 
[1590000], rate=48748.08/min 
[1600000], rate=49029.62/min 
[1610000], rate=49135.30/min 
[1620000], rate=49265.08/min 
[1630000], rate=49393.94/min 
[1640000], rate=49621.79/min 
[1650000], rate=49748.74/min 
[1660000], rate=49874.81/min 
[1670000], rate=50074.96/min 
[1680000], rate=50224.22/min 
[1690000], rate=50372.58/min 
[1700000], rate=50545.09/min 
[1710000], rate=50716.76/min 
[1720000], rate=50912.68/min 
[1730000], rate=51007.37/min 
[1740000], rate=51126.35/min 
[1750000], rate=51269.53/min 
[1760000], rate=51386.86/min 
[1770000], rate=51503.39/min 
[1780000], rate=51644.10/min 
[1790000], rate=51808.97/min 
[1800000], rate=51948.05/min 
[1810000], rate=52161.38/min 
[1820000], rate=52298.85/min 
[1830000], rate=52435.53/min 
[1840000], rate=52571.43/min 
[1850000], rate=52656.55/min 
[1860000], rate=52691.22/min 
[1870000], rate=52750.35/min 
[1880000], rate=52808.99/min 
[1890000], rate=52916.47/min 
[1900000], rate=53023.26/min 
[1910000], rate=53104.73/min 
[1920000], rate=53234.75/min 
[1930000], rate=53339.47/min 
[1940000], rate=53468.08/min 
[1950000], rate=53571.43/min 
[1960000], rate=53649.64/min 
[1970000], rate=53751.71/min 
[1980000], rate=53877.55/min 
[1990000], rate=53978.30/min 
[2000000], rate=54078.41/min 
[2010000], rate=54177.90/min 
[2020000], rate=54276.76/min 
[2030000], rate=54375.00/min 
[2040000], rate=54472.63/min 
[2050000], rate=54569.65/min 
[2060000], rate=54690.27/min 
[2070000], rate=54810.24/min 
[2080000], rate=54593.18/min 
[2090000], rate=54191.88/min 
[2100000], rate=53915.28/min 
[2110000], rate=53666.81/min 
[2120000], rate=53512.83/min 
[2130000], rate=53316.65/min 
[2140000], rate=53123.71/min 
[2150000], rate=53108.28/min 
[2160000], rate=52984.46/min 
[2170000], rate=52840.91/min 
[2180000], rate=52741.94/min 
[2190000], rate=52623.15/min 
[2200000], rate=52339.41/min 
[2210000], rate=52143.14/min 
[2220000], rate=52031.25/min 
[2230000], rate=51920.84/min 
[2240000], rate=51911.94/min 
[2250000], rate=51883.17/min 
[2260000], rate=51775.49/min 
[2270000], rate=51747.72/min 
[2280000], rate=51720.23/min 
[2290000], rate=51712.46/min 
[2300000], rate=51762.94/min 
[2310000], rate=51793.72/min 
[2320000], rate=51785.71/min 
[2330000], rate=51816.16/min 
[2340000], rate=51827.24/min 
[2350000], rate=51857.30/min 
[2360000], rate=51906.16/min 
[2370000], rate=51973.68/min 
[2380000], rate=52059.79/min 
[2390000], rate=52107.56/min 
[2400000], rate=52155.02/min 
[2410000], rate=52202.17/min 
[2420000], rate=52286.64/min 
[2430000], rate=52351.89/min 
[2440000], rate=52435.53/min 
[2450000], rate=52537.53/min 
[2460000], rate=52639.09/min -building interval tree based on /tmp/nxf.yOP1RrduOk/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.08 min).
-mapping reads to genes

[10000], rate=13636.36/min 
[20000], rate=13793.10/min 
[30000], rate=14754.10/min 
[40000], rate=17021.28/min 
[50000], rate=16759.78/min 
[60000], rate=15929.20/min 
[70000], rate=15555.56/min 
[80000], rate=15238.10/min 
[90000], rate=16119.40/min 
[100000], rate=17094.02/min 
[110000], rate=18232.04/min 
[120000], rate=19302.95/min 
[130000], rate=20259.74/min 
[140000], rate=21052.63/min 
[150000], rate=22058.82/min 
[160000], rate=23076.92/min 
[170000], rate=23502.30/min 
[180000], rate=24434.39/min 
[190000], rate=25389.76/min 
[200000], rate=26315.79/min 
[210000], rate=26865.67/min 
[220000], rate=27615.06/min 
[230000], rate=28453.61/min 
[240000], rate=29447.85/min 
[250000], rate=30364.37/min 
[260000], rate=31262.53/min 
[270000], rate=32079.21/min 
[280000], rate=32941.18/min 
[290000], rate=33526.01/min 
[300000], rate=34155.60/min 
[310000], rate=34766.36/min 
[320000], rate=35359.12/min 
[330000], rate=36000.00/min 
[340000], rate=36690.65/min 
[350000], rate=37300.18/min 
[360000], rate=37961.34/min 
[370000], rate=38608.70/min 
[380000], rate=38709.68/min 
[390000], rate=37083.99/min 
[400000], rate=35874.44/min 
[410000], rate=34794.91/min 
[420000], rate=33825.50/min 
[430000], rate=33376.46/min 
[440000], rate=33587.79/min 
[450000], rate=33834.59/min 
[460000], rate=34200.74/min 
[470000], rate=34516.52/min 
[480000], rate=34866.83/min 
[490000], rate=35251.80/min 
[500000], rate=35419.13/min 
[510000], rate=35831.38/min 
[520000], rate=36194.90/min 
[530000], rate=36342.86/min 
[540000], rate=36693.09/min 
[550000], rate=36871.51/min 
[560000], rate=36641.22/min 
[570000], rate=36853.45/min 
[580000], rate=37219.25/min 
[590000], rate=37619.55/min 
[600000], rate=38135.59/min 
[610000], rate=38566.91/min 
[620000], rate=38993.71/min 
[630000], rate=39211.62/min 
[640000], rate=39183.67/min 
[650000], rate=39235.41/min 
[660000], rate=39363.82/min 
[670000], rate=39411.76/min 
[680000], rate=39534.88/min 
[690000], rate=39428.57/min 
[700000], rate=39325.84/min 
[710000], rate=39444.44/min 
[720000], rate=39488.12/min 
[730000], rate=39638.01/min 
[740000], rate=39820.63/min 
[750000], rate=39964.48/min 
[760000], rate=40140.85/min 
[770000], rate=40384.62/min 
[780000], rate=40589.77/min 
[790000], rate=40791.74/min 
[800000], rate=41060.74/min 
[810000], rate=41291.42/min 
[820000], rate=41554.05/min 
[830000], rate=41778.52/min 
[840000], rate=42070.12/min 
[850000], rate=42358.80/min 
[860000], rate=42750.62/min 
[870000], rate=43140.50/min 
[880000], rate=43385.37/min 
[890000], rate=43663.12/min 
[900000], rate=43938.16/min 
[910000], rate=44067.80/min 
[920000], rate=43740.10/min 
[930000], rate=43424.12/min 
[940000], rate=43086.33/min 
[950000], rate=42857.14/min 
[960000], rate=42729.97/min 
[970000], rate=42606.15/min 
[980000], rate=42670.54/min 
[990000], rate=42795.39/min 
[1000000], rate=42553.19/min 
[1010000], rate=42377.62/min 
[1020000], rate=42265.19/min 
[1030000], rate=42126.79/min 
[1040000], rate=42048.52/min 
[1050000], rate=42084.17/min 
[1060000], rate=42063.49/min 
[1070000], rate=42043.22/min 
[1080000], rate=42105.26/min 
[1090000], rate=42139.18/min 
[1100000], rate=42145.59/min 
[1110000], rate=41965.97/min 
[1120000], rate=41921.40/min 
[1130000], rate=41955.45/min 
[1140000], rate=41963.19/min 
[1150000], rate=41996.35/min 
[1160000], rate=42028.99/min 
[1170000], rate=42035.93/min 
[1180000], rate=42092.75/min 
[1190000], rate=42099.06/min 
[1200000], rate=42080.65/min 
[1210000], rate=42013.89/min 
[1220000], rate=42068.97/min 
[1230000], rate=42147.34/min 
[1240000], rate=42176.87/min 
[1250000], rate=42229.73/min 
[1260000], rate=42258.24/min 
[1270000], rate=42286.35/min 
[1280000], rate=42407.51/min 
[1290000], rate=42457.49/min 
[1300000], rate=42437.43/min 
[1310000], rate=42463.53/min 
[1320000], rate=42443.73/min 
[1330000], rate=42537.31/min 
[1340000], rate=42607.31/min 
[1350000], rate=42721.52/min 
[1360000], rate=42744.89/min 
[1370000], rate=42723.49/min 
[1380000], rate=42812.82/min 
[1390000], rate=42879.18/min 
[1400000], rate=42922.84/min 
[1410000], rate=42944.16/min 
[1420000], rate=42965.20/min 
[1430000], rate=43029.09/min 
[1440000], rate=43113.77/min 
[1450000], rate=43176.18/min 
[1460000], rate=43237.91/min 
[1470000], rate=43320.24/min 
[1480000], rate=43444.23/min 
[1490000], rate=43546.03/min 
[1500000], rate=43689.32/min 
[1510000], rate=43810.44/min 
[1520000], rate=43951.81/min 
[1530000], rate=44113.41/min 
[1540000], rate=44252.87/min 
[1550000], rate=44433.83/min 
[1560000], rate=44592.66/min 
[1570000], rate=44750.59/min 
[1580000], rate=44865.12/min 
[1590000], rate=44537.82/min 
[1600000], rate=44178.55/min 
[1610000], rate=43909.09/min 
[1620000], rate=43646.16/min 
[1630000], rate=43389.53/min 
[1640000], rate=43214.76/min 
[1650000], rate=43043.48/min 
[1660000], rate=42931.03/min 
[1670000], rate=42820.51/min 
[1680000], rate=42766.23/min 
[1690000], rate=42694.74/min 
[1700000], rate=42624.32/min 
[1710000], rate=42607.97/min 
[1720000], rate=42574.26/min 
[1730000], rate=42558.43/min 
[1740000], rate=42508.14/min 
[1750000], rate=42510.12/min 
[1760000], rate=42563.48/min 
[1770000], rate=42599.28/min 
[1780000], rate=42651.76/min 
[1790000], rate=42686.80/min 
[1800000], rate=42704.63/min 
[1810000], rate=42755.91/min 
[1820000], rate=42789.97/min 
[1830000], rate=42840.42/min 
[1840000], rate=42907.11/min 
[1850000], rate=42973.29/min 
[1860000], rate=43055.56/min 
[1870000], rate=43153.85/min 
[1880000], rate=43218.39/min 
[1890000], rate=43298.97/min 
[1900000], rate=43395.51/min 
[1910000], rate=43474.96/min 
[1920000], rate=43553.88/min 
[1930000], rate=43665.16/min 
[1940000], rate=43759.40/min 
[1950000], rate=43803.82/min 
[1960000], rate=43896.98/min 
[1970000], rate=43956.86/min 
[1980000], rate=44016.30/min 
[1990000], rate=44091.58/min 
[2000000], rate=44166.36/min 
[2010000], rate=44224.42/min 
[2020000], rate=44265.89/min 
[2030000], rate=44307.02/min 
[2040000], rate=44363.90/min 
[2050000], rate=44420.37/min 
[2060000], rate=44508.46/min 
[2070000], rate=44612.07/min 
[2080000], rate=44699.14/min 
[2090000], rate=44801.71/min 
[2100000], rate=44935.81/min 
[2110000], rate=45037.35/min 
[2120000], rate=45154.42/min 
[2130000], rate=45270.99/min 
[2140000], rate=45387.06/min 
[2150000], rate=45534.77/min 
[2160000], rate=45649.88/min 
[2170000], rate=45780.59/min 
[2180000], rate=45894.74/min 
[2190000], rate=45992.30/min 
[2200000], rate=46089.39/min 
[2210000], rate=46234.31/min 
[2220000], rate=46411.15/min 
[2230000], rate=46506.78/min 
[2240000], rate=46618.11/min 
[2250000], rate=46728.97/min 
[2260000], rate=46839.38/min 
[2270000], rate=46965.52/min 
[2280000], rate=47075.02/min 
[2290000], rate=47200.27/min 
[2300000], rate=47131.15/min 
[2310000], rate=47062.82/min 
[2320000], rate=47027.03/min 
[2330000], rate=47023.21/min 
[2340000], rate=46987.95/min 
[2350000], rate=46968.69/min 
[2360000], rate=46949.60/min 
[2370000], rate=46915.21/min 
[2380000], rate=46911.96/min 
[2390000], rate=46893.39/min 
[2400000], rate=46890.26/min 
[2410000], rate=46871.96/min 
[2420000], rate=46884.08/min 
[2430000], rate=46911.20/min 
[2440000], rate=46938.12/min 
[2450000], rate=46949.86/min -building interval tree based on /tmp/nxf.yOP1RrduOk/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.08 min).
-mapping reads to genes

[10000], rate=42857.14/min 
[20000], rate=50000.00/min 
[30000], rate=60000.00/min 
[40000], rate=75000.00/min 
[50000], rate=78947.37/min 
[60000], rate=81818.18/min 
[70000], rate=91304.35/min 
[80000], rate=96000.00/min 
[90000], rate=100000.00/min 
[100000], rate=107142.86/min 
[110000], rate=117857.14/min 
[120000], rate=120000.00/min 
[130000], rate=120000.00/min 
[140000], rate=113513.51/min 
[150000], rate=107142.86/min 
[160000], rate=102127.66/min 
[170000], rate=91071.43/min 
[180000], rate=82442.75/min 
[190000], rate=83211.68/min 
[200000], rate=83916.08/min 
[210000], rate=86301.37/min 
[220000], rate=89795.92/min 
[230000], rate=93243.24/min 
[240000], rate=92307.69/min 
[250000], rate=93750.00/min 
[260000], rate=95705.52/min 
[270000], rate=96428.57/min 
[280000], rate=96000.00/min 
[290000], rate=98305.08/min 
[300000], rate=98901.10/min 
[310000], rate=100000.00/min 
[320000], rate=100000.00/min 
[330000], rate=101538.46/min 
[340000], rate=102512.56/min 
[350000], rate=103960.40/min 
[360000], rate=104854.37/min 
[370000], rate=106220.10/min 
[380000], rate=106542.06/min 
[390000], rate=106363.64/min 
[400000], rate=107142.86/min 
[410000], rate=107894.74/min 
[420000], rate=108154.51/min 
[430000], rate=108860.76/min 
[440000], rate=109543.57/min 
[450000], rate=110204.08/min 
[460000], rate=110843.37/min 
[470000], rate=112350.60/min 
[480000], rate=92307.69/min 
[490000], rate=75000.00/min 
[500000], rate=68181.82/min 
[510000], rate=61693.55/min 
[520000], rate=56624.32/min 
[530000], rate=52131.15/min 
[540000], rate=47024.67/min 
[550000], rate=45769.76/min 
[560000], rate=44152.43/min 
[570000], rate=40473.37/min 
[580000], rate=37339.06/min 
[590000], rate=35329.34/min 
[600000], rate=34416.83/min 
[610000], rate=33795.01/min 
[620000], rate=33184.66/min 
[630000], rate=32225.06/min 
[640000], rate=31788.08/min 
[650000], rate=31451.61/min 
[660000], rate=31034.48/min 
[670000], rate=30710.47/min 
[680000], rate=30312.04/min 
[690000], rate=30174.93/min 
[700000], rate=30129.12/min 
[710000], rate=30127.30/min 
[720000], rate=30041.72/min 
[730000], rate=30082.42/min 
[740000], rate=30040.60/min 
[750000], rate=30060.12/min 
[760000], rate=30118.89/min 
[770000], rate=30176.36/min 
[780000], rate=30330.52/min 
[790000], rate=30384.62/min 
[800000], rate=30398.99/min 
[810000], rate=30470.22/min 
[820000], rate=30597.01/min 
[830000], rate=30683.92/min 
[840000], rate=30806.85/min 
[850000], rate=30890.37/min 
[860000], rate=30861.24/min 
[870000], rate=30942.50/min 
[880000], rate=31040.56/min 
[890000], rate=31118.88/min 
[900000], rate=31177.83/min 
[910000], rate=31235.70/min 
[920000], rate=31310.27/min 
[930000], rate=31278.03/min 
[940000], rate=31333.33/min 
[950000], rate=31422.27/min 
[960000], rate=31475.41/min 
[970000], rate=31578.95/min 
[980000], rate=31646.93/min 
[990000], rate=31663.11/min 
[1000000], rate=31678.99/min 
[1010000], rate=31711.15/min 
[1020000], rate=31693.42/min 
[1030000], rate=31692.31/min 
[1040000], rate=31788.08/min 
[1050000], rate=31882.59/min 
[1060000], rate=32008.05/min 
[1070000], rate=32035.93/min 
[1080000], rate=32095.10/min 
[1090000], rate=32153.39/min 
[1100000], rate=32305.43/min 
[1110000], rate=32314.41/min 
[1120000], rate=32369.94/min 
[1130000], rate=32424.68/min 
[1140000], rate=32494.06/min 
[1150000], rate=32562.53/min 
[1160000], rate=32645.40/min 
[1170000], rate=32757.82/min 
[1180000], rate=32869.08/min 
[1190000], rate=32948.78/min 
[1200000], rate=33027.52/min 
[1210000], rate=33135.55/min 
[1220000], rate=33257.61/min 
[1230000], rate=33378.56/min 
[1240000], rate=33498.42/min 
[1250000], rate=33632.29/min 
[1260000], rate=33750.00/min 
[1270000], rate=33896.80/min 
[1280000], rate=34027.47/min 
[1290000], rate=34202.39/min 
[1300000], rate=34361.23/min 
[1310000], rate=34534.27/min 
[1320000], rate=34706.40/min 
[1330000], rate=34847.16/min 
[1340000], rate=35002.18/min 
[1350000], rate=35141.00/min 
[1360000], rate=35278.86/min 
[1370000], rate=35415.77/min 
[1380000], rate=35567.01/min 
[1390000], rate=35717.34/min 
[1400000], rate=35882.10/min 
[1410000], rate=36030.66/min 
[1420000], rate=36193.71/min 
[1430000], rate=36355.93/min 
[1440000], rate=36517.33/min 
[1450000], rate=36677.91/min 
[1460000], rate=36822.19/min 
[1470000], rate=36996.64/min 
[1480000], rate=37154.81/min 
[1490000], rate=37203.50/min 
[1500000], rate=37267.08/min 
[1510000], rate=37330.04/min 
[1520000], rate=37392.37/min 
[1530000], rate=37469.39/min 
[1540000], rate=37545.71/min 
[1550000], rate=37621.36/min 
[1560000], rate=37726.72/min 
[1570000], rate=37846.52/min 
[1580000], rate=37950.36/min 
[1590000], rate=38068.64/min 
[1600000], rate=38170.97/min 
[1610000], rate=38272.58/min 
[1620000], rate=38373.47/min 
[1630000], rate=38488.78/min 
[1640000], rate=38618.52/min 
[1650000], rate=38732.39/min 
[1660000], rate=38860.71/min 
[1670000], rate=39003.50/min 
[1680000], rate=39130.43/min 
[1690000], rate=39256.68/min 
[1700000], rate=39397.45/min 
[1710000], rate=39522.34/min 
[1720000], rate=39646.56/min 
[1730000], rate=39785.36/min 
[1740000], rate=39923.52/min 
[1750000], rate=40061.05/min 
[1760000], rate=40197.94/min 
[1770000], rate=40349.54/min 
[1780000], rate=40469.87/min 
[1790000], rate=40375.94/min 
[1800000], rate=40343.67/min 
[1810000], rate=40311.80/min 
[1820000], rate=40235.81/min 
[1830000], rate=40175.63/min 
[1840000], rate=40160.06/min 
[1850000], rate=40159.19/min 
[1860000], rate=40172.79/min 
[1870000], rate=40186.25/min 
[1880000], rate=40228.25/min 
[1890000], rate=40255.59/min 
[1900000], rate=40296.92/min 
[1910000], rate=40337.91/min 
[1920000], rate=40364.40/min 
[1930000], rate=40404.75/min 
[1940000], rate=40458.81/min 
[1950000], rate=40512.47/min 
[1960000], rate=40537.75/min 
[1970000], rate=40590.66/min 
[1980000], rate=40643.17/min 
[1990000], rate=40695.30/min 
[2000000], rate=40760.87/min 
[2010000], rate=40826.00/min 
[2020000], rate=40918.30/min 
[2030000], rate=40996.30/min 
[2040000], rate=41046.28/min 
[2050000], rate=41109.63/min 
[2060000], rate=41172.55/min 
[2070000], rate=41221.37/min 
[2080000], rate=41283.49/min 
[2090000], rate=41345.20/min 
[2100000], rate=41406.51/min 
[2110000], rate=41467.41/min 
[2120000], rate=41541.48/min 
[2130000], rate=41601.56/min 
[2140000], rate=41674.78/min 
[2150000], rate=41774.61/min 
[2160000], rate=41860.47/min 
[2170000], rate=41932.37/min 
[2180000], rate=42017.35/min 
[2190000], rate=42115.38/min 
[2200000], rate=42212.98/min 
[2210000], rate=42323.65/min 
[2220000], rate=42433.90/min 
[2230000], rate=42543.72/min 
[2240000], rate=42666.67/min 
[2250000], rate=42762.12/min 
[2260000], rate=42884.25/min 
[2270000], rate=42992.42/min 
[2280000], rate=43113.77/min 
[2290000], rate=43234.74/min 
[2300000], rate=43287.33/min 
[2310000], rate=43298.97/min 
[2320000], rate=43297.05/min 
[2330000], rate=43308.55/min 
[2340000], rate=43319.96/min 
[2350000], rate=43331.28/min 
[2360000], rate=43342.52/min 
[2370000], rate=43380.11/min 
[2380000], rate=43404.26/min 
[2390000], rate=43428.23/min 
[2400000], rate=43465.14/min 
[2410000], rate=43501.81/min 
[2420000], rate=43538.23/min 
[2430000], rate=43574.42/min 
[2440000], rate=43623.36/min 
[2450000], rate=43672.01/min * Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.handle_multimapping_reads  -J /tmp/nxf.yOP1RrduOk/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt  --genome_lib_dir /tmp/nxf.yOP1RrduOk/ctat_genome_lib_build_dir  --filt_file /tmp/nxf.yOP1RrduOk/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.fail  -M 50  > /tmp/nxf.yOP1RrduOk/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass 
-parsing /tmp/nxf.yOP1RrduOk/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt, organizing read mapping info.

 0.00 reads per min processed...  
 12000000.00 reads per min processed...  
 18000000.00 reads per min processed...  
 24000000.00 reads per min processed...  
 10000000.00 reads per min processed...  
 9000000.00 reads per min processed...  
 8400000.00 reads per min processed...  
 8000000.00 reads per min processed...  
 6750000.00 reads per min processed...  
 6666666.67 reads per min processed...  
 6600000.00 reads per min processed...  
 6545454.55 reads per min processed...  
 6500000.00 reads per min processed...  
 6461538.46 reads per min processed...  
 6428571.43 reads per min processed...  
 6000000.00 reads per min processed...  
 6000000.00 reads per min processed...  
 6000000.00 reads per min processed...  
 6000000.00 reads per min processed...  
 6000000.00 reads per min processed...  
 6000000.00 reads per min processed...  
 6000000.00 reads per min processed...  
 6000000.00 reads per min processed...  
 6000000.00 reads per min processed...  
 5769230.77 reads per min processed...  
 5777777.78 reads per min processed...  
 5785714.29 reads per min processed...  
 5793103.45 reads per min processed...  
 5612903.23 reads per min processed...  
 5625000.00 reads per min processed...  
 5636363.64 reads per min processed...  
 5485714.29 reads per min processed...  
 5500000.00 reads per min processed...  
 5513513.51 reads per min processed...  
 5526315.79 reads per min processed...  
 5538461.54 reads per min processed...  
 5550000.00 reads per min processed...  
 5560975.61 reads per min processed...  
 5571428.57 reads per min processed...  
 5581395.35 reads per min processed...  
 5466666.67 reads per min processed...  
 5478260.87 reads per min processed...  
 5489361.70 reads per min processed...  
 5500000.00 reads per min processed...  
 5510204.08 reads per min processed...  
 5520000.00 reads per min processed...  
 5529411.76 reads per min processed...  
 5538461.54 reads per min processed...  
 5547169.81 reads per min processed...  
 5555555.56 reads per min processed...  
 5666666.67 reads per min processed...  
 5672727.27 reads per min processed...  
 5781818.18 reads per min processed...  
 5785714.29 reads per min processed...  
 5789473.68 reads per min processed...  
 5694915.25 reads per min processed...  
 5700000.00 reads per min processed...  
 5704918.03 reads per min processed...  
 5709677.42 reads per min processed...  
 5714285.71 reads per min processed...  
 5718750.00 reads per min processed...  
 5723076.92 reads per min processed...  
 5727272.73 reads per min processed...  
 5731343.28 reads per min processed...  
 5735294.12 reads per min processed...  
 5739130.43 reads per min processed...  
 5742857.14 reads per min processed...  
 5746478.87 reads per min processed...  
 5671232.88 reads per min processed...  
 5675675.68 reads per min processed...  
 5680000.00 reads per min processed...  
 5684210.53 reads per min processed...  
 5688311.69 reads per min processed...  
 5692307.69 reads per min processed...  
 5696202.53 reads per min processed...  
 5700000.00 reads per min processed...  
 5703703.70 reads per min processed...  
 5707317.07 reads per min processed...  
done.

* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.predict  -J /tmp/nxf.yOP1RrduOk/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass  -O /tmp/nxf.yOP1RrduOk/./star-fusion.preliminary/star-fusion 
-parsing fusion evidence: /tmp/nxf.yOP1RrduOk/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass
-outputting fusion candidates to file: /tmp/nxf.yOP1RrduOk/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary
* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.filter  --fusion_preds /tmp/nxf.yOP1RrduOk/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary  -J /tmp/nxf.yOP1RrduOk/659_bCu-T1-TRNA-1_A23MVY2LT4_1.Chimeric.out.junction  --tmpdir /tmp  --min_junction_reads 0  --min_sum_frags 1  --require_LDAS 0  --max_promiscuity 10  --min_pct_dom_promiscuity 20  --min_novel_junction_support 1  --min_alt_pct_junction 10  --aggregate_novel_junction_dist 5  --min_spanning_frags_only 1  --genome_lib_dir /tmp/nxf.yOP1RrduOk/ctat_genome_lib_build_dir  --out_prefix /tmp/nxf.yOP1RrduOk/./star-fusion.preliminary/star-fusion
CMD: mkdir -p /tmp/nxf.yOP1RrduOk/./star-fusion.preliminary/star-fusion.filter.intermediates_dir
EM: Starting log likelihood: -306025.685760
EM: Round [1] log likelihood: -305878.910216
EM: Round [2] log likelihood: -305821.153289
EM: Round [3] log likelihood: -305792.418768
EM: Round [4] log likelihood: -305776.813147
EM: Round [5] log likelihood: -305767.938047
EM: Round [6] log likelihood: -305762.686548
EM: Round [7] log likelihood: -305759.442075
EM: Round [8] log likelihood: -305757.343332
EM: Round [9] log likelihood: -305755.922857
EM: Round [10] log likelihood: -305754.920516
EM: Round [11] log likelihood: -305754.186870
EM: Round [12] log likelihood: -305753.632905
EM: Round [13] log likelihood: -305753.203549
EM: Round [14] log likelihood: -305752.863421
EM: Round [15] log likelihood: -305752.588975
EM: Round [16] log likelihood: -305752.364027
EM: Round [17] log likelihood: -305752.177134
EM: Round [18] log likelihood: -305752.020003
EM: Round [19] log likelihood: -305751.886494
EM: Round [20] log likelihood: -305751.771979
EM: Round [21] log likelihood: -305751.672911
EM: Round [22] log likelihood: -305751.586537
EM: Round [23] log likelihood: -305751.510689
EM: Round [24] log likelihood: -305751.443648
EM: Round [25] log likelihood: -305751.384029
EM: Round [26] log likelihood: -305751.330713
EM: Round [27] log likelihood: -305751.282785
EM: Round [28] log likelihood: -305751.239490
EM: Round [29] log likelihood: -305751.200206
EM: Round [30] log likelihood: -305751.164410
EM: Round [31] log likelihood: -305751.131664
EM: Round [32] log likelihood: -305751.101601
EM: Round [33] log likelihood: -305751.073905
EM: Round [34] log likelihood: -305751.048309
EM: Round [35] log likelihood: -305751.024584
EM: Round [36] log likelihood: -305751.002531
EM: Round [37] log likelihood: -305750.981980
EM: Round [38] log likelihood: -305750.962782
EM: Round [39] log likelihood: -305750.944808
EM: Round [40] log likelihood: -305750.927943
EM: Round [41] log likelihood: -305750.912089
EM: Round [42] log likelihood: -305750.897156
EM: Round [43] log likelihood: -305750.883066
EM: Round [44] log likelihood: -305750.869751
EM: Round [45] log likelihood: -305750.857149
EM: Round [46] log likelihood: -305750.845204
EM: Round [47] log likelihood: -305750.833867
EM: Round [48] log likelihood: -305750.823093
EM: Round [49] log likelihood: -305750.812841
EM: Round [50] log likelihood: -305750.803077
EM: Round [51] log likelihood: -305750.793765
EM: Round [52] log likelihood: -305750.784876
EM: Round [53] log likelihood: -305750.776384
EM: Round [54] log likelihood: -305750.768262
EM: Round [55] log likelihood: -305750.760488
EM: Round [56] log likelihood: -305750.753041
EM: Round [57] log likelihood: -305750.745901
EM: Round [58] log likelihood: -305750.739051
EM: Round [59] log likelihood: -305750.732473
EM: Round [60] log likelihood: -305750.726154
EM: Round [61] log likelihood: -305750.720078
EM: Round [62] log likelihood: -305750.714232
EM: Round [63] log likelihood: -305750.708605
EM: Round [64] log likelihood: -305750.703185
EM: Round [65] log likelihood: -305750.697961
EM: Round [66] log likelihood: -305750.692923
EM: Round [67] log likelihood: -305750.688063
EM: Round [68] log likelihood: -305750.683372
EM: Round [69] log likelihood: -305750.678841
EM: Round [70] log likelihood: -305750.674463
EM: Round [71] log likelihood: -305750.670231
EM: Round [72] log likelihood: -305750.666138
EM: Round [73] log likelihood: -305750.662178
EM: Round [74] log likelihood: -305750.658345
EM: Round [75] log likelihood: -305750.654633
EM: Round [76] log likelihood: -305750.651038
EM: Round [77] log likelihood: -305750.647553
EM: Round [78] log likelihood: -305750.644176
EM: Round [79] log likelihood: -305750.640900
EM: Round [80] log likelihood: -305750.637722
EM: Round [81] log likelihood: -305750.634638
EM: Round [82] log likelihood: -305750.631644
EM: Round [83] log likelihood: -305750.628737
EM: Round [84] log likelihood: -305750.625914
EM: Round [85] log likelihood: -305750.623170
EM: Round [86] log likelihood: -305750.620503
EM: Round [87] log likelihood: -305750.617911
EM: Round [88] log likelihood: -305750.615390
EM: Round [89] log likelihood: -305750.612937
EM: Round [90] log likelihood: -305750.610551
EM: Round [91] log likelihood: -305750.608229
EM: Round [92] log likelihood: -305750.605969
EM: Round [93] log likelihood: -305750.603768
EM: Round [94] log likelihood: -305750.601625
EM: Round [95] log likelihood: -305750.599537
EM: Round [96] log likelihood: -305750.597502
EM: Round [97] log likelihood: -305750.595520
EM: Round [98] log likelihood: -305750.593588
EM: Round [99] log likelihood: -305750.591704
EM: Round [100] log likelihood: -305750.589868
EM: Round [101] log likelihood: -305750.588077
EM: Round [102] log likelihood: -305750.586330
EM: Round [103] log likelihood: -305750.584625
EM: Round [104] log likelihood: -305750.582962
EM: Round [105] log likelihood: -305750.581339
EM: Round [106] log likelihood: -305750.579755
EM: Round [107] log likelihood: -305750.578209
EM: Round [108] log likelihood: -305750.576699
EM: Round [109] log likelihood: -305750.575225
EM: Round [110] log likelihood: -305750.573785
EM: Round [111] log likelihood: -305750.572379
EM: Round [112] log likelihood: -305750.571005
EM: Round [113] log likelihood: -305750.569663
EM: Round [114] log likelihood: -305750.568351
EM: Round [115] log likelihood: -305750.567070
EM: Round [116] log likelihood: -305750.565818
EM: Round [117] log likelihood: -305750.564593
EM: Round [118] log likelihood: -305750.563397
EM: Round [119] log likelihood: -305750.562227
EM: Round [120] log likelihood: -305750.561083
EM: Round [121] log likelihood: -305750.559965
EM: Round [122] log likelihood: -305750.558871
EM: Round [123] log likelihood: -305750.557802
EM: Round [124] log likelihood: -305750.556755
EM: Round [125] log likelihood: -305750.555732
EM: Round [126] log likelihood: -305750.554731
EM: Round [127] log likelihood: -305750.553752
EM: Round [128] log likelihood: -305750.552793
EM: Round [129] log likelihood: -305750.551856
EM: Round [130] log likelihood: -305750.550938
EM: Round [131] log likelihood: -305750.550040
EM: Round [132] log likelihood: -305750.549162
EM: Round [133] log likelihood: -305750.548302
EM: Round [134] log likelihood: -305750.547460
EM: Round [135] log likelihood: -305750.546636
EM: Round [136] log likelihood: -305750.545829
EM: Round [137] log likelihood: -305750.545039
EM: Round [138] log likelihood: -305750.544266
EM: Round [139] log likelihood: -305750.543509
EM: Round [140] log likelihood: -305750.542768
EM: Round [141] log likelihood: -305750.542042
EM: Round [142] log likelihood: -305750.541331
EM: Round [143] log likelihood: -305750.540635
EM: Round [144] log likelihood: -305750.539953
EM: Round [145] log likelihood: -305750.539286
EM: Round [146] log likelihood: -305750.538632
EM: Round [147] log likelihood: -305750.537991
EM: Round [148] log likelihood: -305750.537364
EM: Round [149] log likelihood: -305750.536750
EM: Round [150] log likelihood: -305750.536148
EM: Round [151] log likelihood: -305750.535558
EM: Round [152] log likelihood: -305750.534980
EM: Round [153] log likelihood: -305750.534414
EM: Round [154] log likelihood: -305750.533860
EM: Round [155] log likelihood: -305750.533316
EM: Round [156] log likelihood: -305750.532784
EM: Round [157] log likelihood: -305750.532262
EM: Round [158] log likelihood: -305750.531751
EM: Round [159] log likelihood: -305750.531250
EM: Round [160] log likelihood: -305750.530760
EM: Round [161] log likelihood: -305750.530279
EM: Round [162] log likelihood: -305750.529807
EM: Round [163] log likelihood: -305750.529345
EM: Round [164] log likelihood: -305750.528893
EM: Round [165] log likelihood: -305750.528449
EM: Round [166] log likelihood: -305750.528014
EM: Round [167] log likelihood: -305750.527588
EM: Round [168] log likelihood: -305750.527170
EM: Round [169] log likelihood: -305750.526761
EM: Round [170] log likelihood: -305750.526360
EM: Round [171] log likelihood: -305750.525966
EM: Round [172] log likelihood: -305750.525581
EM: Round [173] log likelihood: -305750.525203
EM: Round [174] log likelihood: -305750.524833
EM: Round [175] log likelihood: -305750.524469
EM: Round [176] log likelihood: -305750.524113
EM: Round [177] log likelihood: -305750.523764
EM: Round [178] log likelihood: -305750.523422
EM: Round [179] log likelihood: -305750.523087
EM: Round [180] log likelihood: -305750.522758
EM: Round [181] log likelihood: -305750.522436
EM: Round [182] log likelihood: -305750.522120
EM: Round [183] log likelihood: -305750.521810
EM: Round [184] log likelihood: -305750.521506
EM: Round [185] log likelihood: -305750.521208
EM: Round [186] log likelihood: -305750.520916
EM: Round [187] log likelihood: -305750.520630
EM: Round [188] log likelihood: -305750.520349
EM: Round [189] log likelihood: -305750.520074
EM: Round [190] log likelihood: -305750.519804
EM: Round [191] log likelihood: -305750.519539
EM: Round [192] log likelihood: -305750.519280
EM: Round [193] log likelihood: -305750.519025
EM: Round [194] log likelihood: -305750.518776
EM: Round [195] log likelihood: -305750.518531
EM: Round [196] log likelihood: -305750.518292
EM: Round [197] log likelihood: -305750.518056
EM: Round [198] log likelihood: -305750.517826
EM: Round [199] log likelihood: -305750.517599
EM: Round [200] log likelihood: -305750.517378
EM: Round [201] log likelihood: -305750.517160
EM: Round [202] log likelihood: -305750.516947
EM: Round [203] log likelihood: -305750.516738
EM: Round [204] log likelihood: -305750.516533
EM: Round [205] log likelihood: -305750.516332
EM: Round [206] log likelihood: -305750.516134
EM: Round [207] log likelihood: -305750.515941
EM: Round [208] log likelihood: -305750.515751
EM: Round [209] log likelihood: -305750.515565
EM: Round [210] log likelihood: -305750.515383
EM: Round [211] log likelihood: -305750.515204
EM: Round [212] log likelihood: -305750.515028
EM: Round [213] log likelihood: -305750.514856
EM: Round [214] log likelihood: -305750.514687
EM: Round [215] log likelihood: -305750.514522
EM: Round [216] log likelihood: -305750.514359
EM: Round [217] log likelihood: -305750.514200
EM: Round [218] log likelihood: -305750.514044
EM: Round [219] log likelihood: -305750.513891
EM: Round [220] log likelihood: -305750.513741
EM: Round [221] log likelihood: -305750.513593
EM: Round [222] log likelihood: -305750.513449
EM: Round [223] log likelihood: -305750.513307
EM: Round [224] log likelihood: -305750.513168
EM: Round [225] log likelihood: -305750.513032
EM: Round [226] log likelihood: -305750.512898
EM: Round [227] log likelihood: -305750.512767
EM: Round [228] log likelihood: -305750.512638
EM: Round [229] log likelihood: -305750.512512
EM: Round [230] log likelihood: -305750.512388
EM: Round [231] log likelihood: -305750.512267
EM: Round [232] log likelihood: -305750.512148
EM: Round [233] log likelihood: -305750.512031
EM: Round [234] log likelihood: -305750.511917
EM: Round [235] log likelihood: -305750.511804
EM: Round [236] log likelihood: -305750.511694
EM: Round [237] log likelihood: -305750.511586
EM: Round [238] log likelihood: -305750.511480
EM: Round [239] log likelihood: -305750.511376
EM: Round [240] log likelihood: -305750.511274
EM: Round [241] log likelihood: -305750.511174
EM: Round [242] log likelihood: -305750.511076
EM: Stopping iterations at round 242 due to insufficient improvement in likelihood.
EM: Starting log likelihood: -304162.357314
EM: Round [1] log likelihood: -304037.731665
EM: Round [2] log likelihood: -303989.820064
EM: Round [3] log likelihood: -303966.550777
EM: Round [4] log likelihood: -303954.150390
EM: Round [5] log likelihood: -303947.209021
EM: Round [6] log likelihood: -303943.159415
EM: Round [7] log likelihood: -303940.689748
EM: Round [8] log likelihood: -303939.110585
EM: Round [9] log likelihood: -303938.051945
EM: Round [10] log likelihood: -303937.310142
EM: Round [11] log likelihood: -303936.769482
EM: Round [12] log likelihood: -303936.361881
EM: Round [13] log likelihood: -303936.045741
EM: Round [14] log likelihood: -303935.794664
EM: Round [15] log likelihood: -303935.591278
EM: Round [16] log likelihood: -303935.423755
EM: Round [17] log likelihood: -303935.283792
EM: Round [18] log likelihood: -303935.165406
EM: Round [19] log likelihood: -303935.064180
EM: Round [20] log likelihood: -303934.976789
EM: Round [21] log likelihood: -303934.900687
EM: Round [22] log likelihood: -303934.833895
EM: Round [23] log likelihood: -303934.774852
EM: Round [24] log likelihood: -303934.722315
EM: Round [25] log likelihood: -303934.675284
EM: Round [26] log likelihood: -303934.632946
EM: Round [27] log likelihood: -303934.594635
EM: Round [28] log likelihood: -303934.559800
EM: Round [29] log likelihood: -303934.527983
EM: Round [30] log likelihood: -303934.498803
EM: Round [31] log likelihood: -303934.471937
EM: Round [32] log likelihood: -303934.447112
EM: Round [33] log likelihood: -303934.424096
EM: Round [34] log likelihood: -303934.402692
EM: Round [35] log likelihood: -303934.382728
EM: Round [36] log likelihood: -303934.364057
EM: Round [37] log likelihood: -303934.346553
EM: Round [38] log likelihood: -303934.330103
EM: Round [39] log likelihood: -303934.314612
EM: Round [40] log likelihood: -303934.299994
EM: Round [41] log likelihood: -303934.286174
EM: Round [42] log likelihood: -303934.273086
EM: Round [43] log likelihood: -303934.260672
EM: Round [44] log likelihood: -303934.248879
EM: Round [45] log likelihood: -303934.237660
EM: Round [46] log likelihood: -303934.226975
EM: Round [47] log likelihood: -303934.216785
EM: Round [48] log likelihood: -303934.207055
EM: Round [49] log likelihood: -303934.197757
EM: Round [50] log likelihood: -303934.188861
EM: Round [51] log likelihood: -303934.180343
EM: Round [52] log likelihood: -303934.172180
EM: Round [53] log likelihood: -303934.164349
EM: Round [54] log likelihood: -303934.156832
EM: Round [55] log likelihood: -303934.149611
EM: Round [56] log likelihood: -303934.142670
EM: Round [57] log likelihood: -303934.135993
EM: Round [58] log likelihood: -303934.129566
EM: Round [59] log likelihood: -303934.123377
EM: Round [60] log likelihood: -303934.117412
EM: Round [61] log likelihood: -303934.111661
EM: Round [62] log likelihood: -303934.106114
EM: Round [63] log likelihood: -303934.100760
EM: Round [64] log likelihood: -303934.095590
EM: Round [65] log likelihood: -303934.090595
EM: Round [66] log likelihood: -303934.085768
EM: Round [67] log likelihood: -303934.081101
EM: Round [68] log likelihood: -303934.076586
EM: Round [69] log likelihood: -303934.072218
EM: Round [70] log likelihood: -303934.067989
EM: Round [71] log likelihood: -303934.063894
EM: Round [72] log likelihood: -303934.059927
EM: Round [73] log likelihood: -303934.056082
EM: Round [74] log likelihood: -303934.052355
EM: Round [75] log likelihood: -303934.048741
EM: Round [76] log likelihood: -303934.045235
EM: Round [77] log likelihood: -303934.041833
EM: Round [78] log likelihood: -303934.038531
EM: Round [79] log likelihood: -303934.035325
EM: Round [80] log likelihood: -303934.032211
EM: Round [81] log likelihood: -303934.029186
EM: Round [82] log likelihood: -303934.026247
EM: Round [83] log likelihood: -303934.023390
EM: Round [84] log likelihood: -303934.020612
EM: Round [85] log likelihood: -303934.017911
EM: Round [86] log likelihood: -303934.015284
EM: Round [87] log likelihood: -303934.012727
EM: Round [88] log likelihood: -303934.010240
EM: Round [89] log likelihood: -303934.007818
EM: Round [90] log likelihood: -303934.005461
EM: Round [91] log likelihood: -303934.003165
EM: Round [92] log likelihood: -303934.000929
EM: Round [93] log likelihood: -303933.998750
EM: Round [94] log likelihood: -303933.996628
EM: Round [95] log likelihood: -303933.994559
EM: Round [96] log likelihood: -303933.992543
EM: Round [97] log likelihood: -303933.990577
EM: Round [98] log likelihood: -303933.988660
EM: Round [99] log likelihood: -303933.986791
EM: Round [100] log likelihood: -303933.984968
EM: Round [101] log likelihood: -303933.983189
EM: Round [102] log likelihood: -303933.981453
EM: Round [103] log likelihood: -303933.979760
EM: Round [104] log likelihood: -303933.978106
EM: Round [105] log likelihood: -303933.976493
EM: Round [106] log likelihood: -303933.974917
EM: Round [107] log likelihood: -303933.973379
EM: Round [108] log likelihood: -303933.971877
EM: Round [109] log likelihood: -303933.970410
EM: Round [110] log likelihood: -303933.968977
EM: Round [111] log likelihood: -303933.967577
EM: Round [112] log likelihood: -303933.966209
EM: Round [113] log likelihood: -303933.964872
EM: Round [114] log likelihood: -303933.963566
EM: Round [115] log likelihood: -303933.962290
EM: Round [116] log likelihood: -303933.961042
EM: Round [117] log likelihood: -303933.959822
EM: Round [118] log likelihood: -303933.958630
EM: Round [119] log likelihood: -303933.957464
EM: Round [120] log likelihood: -303933.956323
EM: Round [121] log likelihood: -303933.955209
EM: Round [122] log likelihood: -303933.954118
EM: Round [123] log likelihood: -303933.953052
EM: Round [124] log likelihood: -303933.952008
EM: Round [125] log likelihood: -303933.950988
EM: Round [126] log likelihood: -303933.949990
EM: Round [127] log likelihood: -303933.949013
EM: Round [128] log likelihood: -303933.948057
EM: Round [129] log likelihood: -303933.947122
EM: Round [130] log likelihood: -303933.946206
EM: Round [131] log likelihood: -303933.945311
EM: Round [132] log likelihood: -303933.944434
EM: Round [133] log likelihood: -303933.943576
EM: Round [134] log likelihood: -303933.942736
EM: Round [135] log likelihood: -303933.941914
EM: Round [136] log likelihood: -303933.941109
EM: Round [137] log likelihood: -303933.940321
EM: Round [138] log likelihood: -303933.939549
EM: Round [139] log likelihood: -303933.938794
EM: Round [140] log likelihood: -303933.938054
EM: Round [141] log likelihood: -303933.937330
EM: Round [142] log likelihood: -303933.936620
EM: Round [143] log likelihood: -303933.935926
EM: Round [144] log likelihood: -303933.935245
EM: Round [145] log likelihood: -303933.934579
EM: Round [146] log likelihood: -303933.933926
EM: Round [147] log likelihood: -303933.933287
EM: Round [148] log likelihood: -303933.932661
EM: Round [149] log likelihood: -303933.932047
EM: Round [150] log likelihood: -303933.931446
EM: Round [151] log likelihood: -303933.930858
EM: Round [152] log likelihood: -303933.930281
EM: Round [153] log likelihood: -303933.929716
EM: Round [154] log likelihood: -303933.929162
EM: Round [155] log likelihood: -303933.928620
EM: Round [156] log likelihood: -303933.928088
EM: Round [157] log likelihood: -303933.927568
EM: Round [158] log likelihood: -303933.927057
EM: Round [159] log likelihood: -303933.926557
EM: Round [160] log likelihood: -303933.926067
EM: Round [161] log likelihood: -303933.925587
EM: Round [162] log likelihood: -303933.925117
EM: Round [163] log likelihood: -303933.924655
EM: Round [164] log likelihood: -303933.924204
EM: Round [165] log likelihood: -303933.923761
EM: Round [166] log likelihood: -303933.923326
EM: Round [167] log likelihood: -303933.922901
EM: Round [168] log likelihood: -303933.922484
EM: Round [169] log likelihood: -303933.922075
EM: Round [170] log likelihood: -303933.921674
EM: Round [171] log likelihood: -303933.921282
EM: Round [172] log likelihood: -303933.920897
EM: Round [173] log likelihood: -303933.920519
EM: Round [174] log likelihood: -303933.920149
EM: Round [175] log likelihood: -303933.919787
EM: Round [176] log likelihood: -303933.919431
EM: Round [177] log likelihood: -303933.919083
EM: Round [178] log likelihood: -303933.918741
EM: Round [179] log likelihood: -303933.918406
EM: Round [180] log likelihood: -303933.918078
EM: Round [181] log likelihood: -303933.917756
EM: Round [182] log likelihood: -303933.917441
EM: Round [183] log likelihood: -303933.917131
EM: Round [184] log likelihood: -303933.916828
EM: Round [185] log likelihood: -303933.916530
EM: Round [186] log likelihood: -303933.916239
EM: Round [187] log likelihood: -303933.915953
EM: Round [188] log likelihood: -303933.915672
EM: Round [189] log likelihood: -303933.915398
EM: Round [190] log likelihood: -303933.915128
EM: Round [191] log likelihood: -303933.914864
EM: Round [192] log likelihood: -303933.914605
EM: Round [193] log likelihood: -303933.914351
EM: Round [194] log likelihood: -303933.914102
EM: Round [195] log likelihood: -303933.913857
EM: Round [196] log likelihood: -303933.913618
EM: Round [197] log likelihood: -303933.913383
EM: Round [198] log likelihood: -303933.913152
EM: Round [199] log likelihood: -303933.912927
EM: Round [200] log likelihood: -303933.912705
EM: Round [201] log likelihood: -303933.912488
EM: Round [202] log likelihood: -303933.912275
EM: Round [203] log likelihood: -303933.912066
EM: Round [204] log likelihood: -303933.911861
EM: Round [205] log likelihood: -303933.911660
EM: Round [206] log likelihood: -303933.911463
EM: Round [207] log likelihood: -303933.911270
EM: Round [208] log likelihood: -303933.911081
EM: Round [209] log likelihood: -303933.910895
EM: Round [210] log likelihood: -303933.910712
EM: Round [211] log likelihood: -303933.910534
EM: Round [212] log likelihood: -303933.910359
EM: Round [213] log likelihood: -303933.910187
EM: Round [214] log likelihood: -303933.910018
EM: Round [215] log likelihood: -303933.909853
EM: Round [216] log likelihood: -303933.909691
EM: Round [217] log likelihood: -303933.909532
EM: Round [218] log likelihood: -303933.909376
EM: Round [219] log likelihood: -303933.909223
EM: Round [220] log likelihood: -303933.909073
EM: Round [221] log likelihood: -303933.908925
EM: Round [222] log likelihood: -303933.908781
EM: Round [223] log likelihood: -303933.908640
EM: Round [224] log likelihood: -303933.908501
EM: Round [225] log likelihood: -303933.908365
EM: Round [226] log likelihood: -303933.908231
EM: Round [227] log likelihood: -303933.908100
EM: Round [228] log likelihood: -303933.907971
EM: Round [229] log likelihood: -303933.907845
EM: Round [230] log likelihood: -303933.907722
EM: Round [231] log likelihood: -303933.907601
EM: Round [232] log likelihood: -303933.907482
EM: Round [233] log likelihood: -303933.907365
EM: Round [234] log likelihood: -303933.907251
EM: Round [235] log likelihood: -303933.907138
EM: Round [236] log likelihood: -303933.907028
EM: Round [237] log likelihood: -303933.906920
EM: Round [238] log likelihood: -303933.906815
EM: Round [239] log likelihood: -303933.906711
EM: Round [240] log likelihood: -303933.906609
EM: Round [241] log likelihood: -303933.906509
EM: Stopping iterations at round 241 due to insufficient improvement in likelihood.
CMD: /usr/local/src/STAR-Fusion/util/../FusionFilter/blast_and_promiscuity_filter.pl --out_prefix /tmp/nxf.yOP1RrduOk/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion --max_promiscuity 10 --min_pct_dom_promiscuity 20  --fusion_preds /tmp/nxf.yOP1RrduOk/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter --genome_lib_dir /tmp/nxf.yOP1RrduOk/ctat_genome_lib_build_dir 
CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/blast_filter.pl --fusion_preds /tmp/nxf.yOP1RrduOk/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter --genome_lib_dir /tmp/nxf.yOP1RrduOk/ctat_genome_lib_build_dir
CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/promiscuity_filter.pl --fusion_preds /tmp/nxf.yOP1RrduOk/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter.post_blast_filter  --genome_lib_dir /tmp/nxf.yOP1RrduOk/ctat_genome_lib_build_dir  --max_promiscuity 10  --min_pct_dom_promiscuity 20 
CMD: cp /tmp/nxf.yOP1RrduOk/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter.post_blast_filter.post_promisc_filter /tmp/nxf.yOP1RrduOk/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter
CMD: /usr/local/src/STAR-Fusion/util/column_exclusions.pl /tmp/nxf.yOP1RrduOk/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter JunctionReads,SpanningFrags > /tmp/nxf.yOP1RrduOk/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter.abridged
CMD: ln -sf /tmp/nxf.yOP1RrduOk/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter /tmp/nxf.yOP1RrduOk/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered
* Running CMD: /usr/local/src/STAR-Fusion/util/incorporate_FFPM_into_final_report.pl /tmp/nxf.yOP1RrduOk/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered 241392050 > /tmp/nxf.yOP1RrduOk/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered.FFPM
* Running CMD: /usr/local/src/STAR-Fusion/util/append_breakpoint_junction_info.pl /tmp/nxf.yOP1RrduOk/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered.FFPM /tmp/nxf.yOP1RrduOk/ctat_genome_lib_build_dir > /tmp/nxf.yOP1RrduOk/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo
* Running CMD: /usr/local/src/STAR-Fusion/FusionAnnotator/FusionAnnotator --genome_lib_dir /tmp/nxf.yOP1RrduOk/ctat_genome_lib_build_dir --annotate /tmp/nxf.yOP1RrduOk/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo > /tmp/nxf.yOP1RrduOk/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot
* Running CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/filter_by_annotation_rules.pl --fusions /tmp/nxf.yOP1RrduOk/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot --genome_lib_dir /tmp/nxf.yOP1RrduOk/ctat_genome_lib_build_dir
-done, see /tmp/nxf.yOP1RrduOk/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass
* Running CMD: /usr/local/src/STAR-Fusion/util/filter_likely_RT_artifacts.pl --fusions /tmp/nxf.yOP1RrduOk/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass --genome_lib_dir /tmp/nxf.yOP1RrduOk/ctat_genome_lib_build_dir
-filter_likely_RT_artifacts: (pass: 1899, filtered: 9977)
* Running CMD: /usr/local/src/STAR-Fusion/util/filter_by_min_FFPM.pl /tmp/nxf.yOP1RrduOk/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass.RTartifact.pass 0.00001
* Running CMD: cp /tmp/nxf.yOP1RrduOk/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass.RTartifact.pass.minFFPM.0.00001.pass star-fusion.fusion_predictions.tsv
* Running CMD: /usr/local/src/STAR-Fusion/util/column_exclusions.pl star-fusion.fusion_predictions.tsv JunctionReads,SpanningFrags > star-fusion.fusion_predictions.abridged.tsv
* Running CMD: /usr/local/src/STAR-Fusion/FusionAnnotator/util/fusion_to_coding_region_effect.pl  --fusions star-fusion.fusion_predictions.abridged.tsv --genome_lib_dir /tmp/nxf.yOP1RrduOk/ctat_genome_lib_build_dir > star-fusion.fusion_predictions.abridged.coding_effect.tsv
WARNING, no entry stored in dbm for [ENSG00000182048.11]
WARNING, no entry stored in dbm for [ENSG00000180747.15]
WARNING, no entry stored in dbm for [ENSG00000282458.1]
WARNING, no entry stored in dbm for [IGH-.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000226312.7]
WARNING, no entry stored in dbm for [ENSG00000232063.2]
WARNING, no entry stored in dbm for [ENSG00000259683.1]
WARNING, no entry stored in dbm for [ENSG00000234715.2]
WARNING, no entry stored in dbm for [ENSG00000254485.5]
WARNING, no entry stored in dbm for [ENSG00000288543.1]
WARNING, no entry stored in dbm for [ENSG00000239268.3]
WARNING, no entry stored in dbm for [ENSG00000225292.2]
WARNING, no entry stored in dbm for [ENSG00000230490.3]
WARNING, no entry stored in dbm for [ENSG00000272848.2]
WARNING, no entry stored in dbm for [ENSG00000226049.3]
WARNING, no entry stored in dbm for [ENSG00000260404.3]
WARNING, no entry stored in dbm for [ENSG00000226823.1]
WARNING, no entry stored in dbm for [IGH-.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000230423.3]
WARNING, no entry stored in dbm for [ENSG00000287411.1]
WARNING, no entry stored in dbm for [ENSG00000223508.5]
WARNING, no entry stored in dbm for [ENSG00000172965.17]
WARNING, no entry stored in dbm for [ENSG00000234231.4]
WARNING, no entry stored in dbm for [ENSG00000215483.11]
WARNING, no entry stored in dbm for [ENSG00000237579.3]
WARNING, no entry stored in dbm for [ENSG00000237773.7]
WARNING, no entry stored in dbm for [ENSG00000227220.1]
WARNING, no entry stored in dbm for [ENSG00000236166.1]
WARNING, no entry stored in dbm for [ENSG00000276548.1]
WARNING, no entry stored in dbm for [ENSG00000189149.12]
WARNING, no entry stored in dbm for [ENSG00000257403.2]
WARNING, no entry stored in dbm for [ENSG00000189149.12]
WARNING, no entry stored in dbm for [ENSG00000234911.2]
WARNING, no entry stored in dbm for [ENSG00000197301.7]
WARNING, no entry stored in dbm for [ENSG00000184139.8]
WARNING, no entry stored in dbm for [ENSG00000215869.4]
WARNING, no entry stored in dbm for [ENSG00000175147.13]
WARNING, no entry stored in dbm for [ENSG00000275374.1]
WARNING, no entry stored in dbm for [ENSG00000227945.1]
WARNING, no entry stored in dbm for [ENSG00000257621.8]
WARNING, no entry stored in dbm for [ENSG00000203739.4]
WARNING, no entry stored in dbm for [ENSG00000257634.1]
WARNING, no entry stored in dbm for [ENSG00000235531.11]
WARNING, no entry stored in dbm for [ENSG00000226453.2]
WARNING, no entry stored in dbm for [ENSG00000249669.10]
WARNING, no entry stored in dbm for [ENSG00000224110.3]
WARNING, no entry stored in dbm for [ENSG00000283698.1]
WARNING, no entry stored in dbm for [ENSG00000214110.3]
WARNING, no entry stored in dbm for [ENSG00000254645.2]
WARNING, no entry stored in dbm for [ENSG00000254645.2]
WARNING, no entry stored in dbm for [ENSG00000237978.6]
WARNING, no entry stored in dbm for [ENSG00000237978.6]
WARNING, no entry stored in dbm for [ENSG00000259673.6]
WARNING, no entry stored in dbm for [IGH-.g@-ext]
WARNING, no entry stored in dbm for [IGH-.g@-ext]
WARNING, no entry stored in dbm for [IGH-.g@-ext]
WARNING, no entry stored in dbm for [IGH-.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000204623.9]
WARNING, no entry stored in dbm for [ENSG00000234840.2]
WARNING, no entry stored in dbm for [ENSG00000254275.6]
WARNING, no entry stored in dbm for [ENSG00000271162.1]
WARNING, no entry stored in dbm for [ENSG00000267774.2]
WARNING, no entry stored in dbm for [ENSG00000283541.1]
WARNING, no entry stored in dbm for [ENSG00000255234.6]
WARNING, no entry stored in dbm for [ENSG00000272817.1]
WARNING, no entry stored in dbm for [ENSG00000230490.3]
WARNING, no entry stored in dbm for [ENSG00000287562.1]
WARNING, no entry stored in dbm for [ENSG00000288543.1]
WARNING, no entry stored in dbm for [ENSG00000203825.4]
WARNING, no entry stored in dbm for [ENSG00000272150.5]
WARNING, no entry stored in dbm for [ENSG00000277125.1]
WARNING, no entry stored in dbm for [ENSG00000229930.1]
WARNING, no entry stored in dbm for [ENSG00000250256.1]
WARNING, no entry stored in dbm for [ENSG00000251314.2]
WARNING, no entry stored in dbm for [ENSG00000259418.1]
WARNING, no entry stored in dbm for [ENSG00000257403.2]
WARNING, no entry stored in dbm for [ENSG00000189149.12]
WARNING, no entry stored in dbm for [ENSG00000230305.2]
WARNING, no entry stored in dbm for [ENSG00000283544.1]
WARNING, no entry stored in dbm for [ENSG00000223745.8]
WARNING, no entry stored in dbm for [ENSG00000204623.9]
WARNING, no entry stored in dbm for [ENSG00000228812.7]
WARNING, no entry stored in dbm for [ENSG00000277977.1]
WARNING, no entry stored in dbm for [ENSG00000225594.1]
WARNING, no entry stored in dbm for [ENSG00000228303.1]
WARNING, no entry stored in dbm for [ENSG00000267419.2]
WARNING, no entry stored in dbm for [ENSG00000240280.7]
WARNING, no entry stored in dbm for [ENSG00000204666.3]
WARNING, no entry stored in dbm for [ENSG00000179818.14]
WARNING, no entry stored in dbm for [ENSG00000240225.10]
WARNING, no entry stored in dbm for [ENSG00000257267.3]
WARNING, no entry stored in dbm for [ENSG00000196922.10]
WARNING, no entry stored in dbm for [ENSG00000260105.6]
WARNING, no entry stored in dbm for [ENSG00000254946.2]
WARNING, no entry stored in dbm for [ENSG00000254946.2]
WARNING, no entry stored in dbm for [ENSG00000230773.9]
WARNING, no entry stored in dbm for [ENSG00000261801.6]
WARNING, no entry stored in dbm for [ENSG00000251003.9]
WARNING, no entry stored in dbm for [ENSG00000237036.5]
WARNING, no entry stored in dbm for [ENSG00000250802.7]
WARNING, no entry stored in dbm for [ENSG00000277270.2]
WARNING, no entry stored in dbm for [ENSG00000228293.1]
WARNING, no entry stored in dbm for [ENSG00000255282.6]
WARNING, no entry stored in dbm for [ENSG00000272848.2]
WARNING, no entry stored in dbm for [ENSG00000285887.1]
WARNING, no entry stored in dbm for [ENSG00000282458.1]
WARNING, no entry stored in dbm for [ENSG00000185596.16]
WARNING, no entry stored in dbm for [ENSG00000225292.2]
WARNING, no entry stored in dbm for [ENSG00000225292.2]
WARNING, no entry stored in dbm for [ENSG00000218902.3]
WARNING, no entry stored in dbm for [ENSG00000229625.3]
WARNING, no entry stored in dbm for [ENSG00000265802.2]
WARNING, no entry stored in dbm for [ENSG00000236404.10]
WARNING, no entry stored in dbm for [ENSG00000269609.6]
WARNING, no entry stored in dbm for [ENSG00000259393.2]
WARNING, no entry stored in dbm for [ENSG00000275139.1]
WARNING, no entry stored in dbm for [ENSG00000230373.8]
WARNING, no entry stored in dbm for [ENSG00000261656.6]
WARNING, no entry stored in dbm for [ENSG00000285080.1]
WARNING, no entry stored in dbm for [ENSG00000263563.6]
WARNING, no entry stored in dbm for [ENSG00000279249.3]
WARNING, no entry stored in dbm for [ENSG00000131002.12]
WARNING, no entry stored in dbm for [ENSG00000214391.3]
WARNING, no entry stored in dbm for [ENSG00000227619.3]
WARNING, no entry stored in dbm for [ENSG00000247131.6]
WARNING, no entry stored in dbm for [ENSG00000236130.2]
WARNING, no entry stored in dbm for [ENSG00000259498.1]
WARNING, no entry stored in dbm for [ENSG00000232600.3]
WARNING, no entry stored in dbm for [ENSG00000231770.6]
WARNING, no entry stored in dbm for [ENSG00000257210.1]
WARNING, no entry stored in dbm for [ENSG00000231840.2]
WARNING, no entry stored in dbm for [ENSG00000231840.2]
WARNING, no entry stored in dbm for [ENSG00000250891.2]
WARNING, no entry stored in dbm for [ENSG00000225470.8]
WARNING, no entry stored in dbm for [ENSG00000225282.1]
WARNING, no entry stored in dbm for [ENSG00000280384.1]
WARNING, no entry stored in dbm for [ENSG00000286187.1]
WARNING, no entry stored in dbm for [ENSG00000170919.16]
WARNING, no entry stored in dbm for [ENSG00000197568.14]
WARNING, no entry stored in dbm for [ENSG00000250896.1]
WARNING, no entry stored in dbm for [ENSG00000224597.10]
WARNING, no entry stored in dbm for [ENSG00000276868.1]
WARNING, no entry stored in dbm for [ENSG00000267646.1]
WARNING, no entry stored in dbm for [ENSG00000205583.13]
WARNING, no entry stored in dbm for [ENSG00000288543.1]
WARNING, no entry stored in dbm for [ENSG00000235303.1]
WARNING, no entry stored in dbm for [ENSG00000233340.1]
WARNING, no entry stored in dbm for [ENSG00000275465.7]
WARNING, no entry stored in dbm for [ENSG00000287367.1]
WARNING, no entry stored in dbm for [ENSG00000207008.1]
WARNING, no entry stored in dbm for [ENSG00000203875.13]
WARNING, no entry stored in dbm for [ENSG00000197989.14]
WARNING, no entry stored in dbm for [ENSG00000255717.7]
WARNING, no entry stored in dbm for [ENSG00000288563.1]
WARNING, no entry stored in dbm for [ENSG00000258573.6]
WARNING, no entry stored in dbm for [ENSG00000247157.7]
WARNING, no entry stored in dbm for [ENSG00000180747.15]
WARNING, no entry stored in dbm for [ENSG00000180747.15]
WARNING, no entry stored in dbm for [ENSG00000225689.2]
WARNING, no entry stored in dbm for [ENSG00000286630.1]
WARNING, no entry stored in dbm for [ENSG00000237296.9]
WARNING, no entry stored in dbm for [ENSG00000267383.7]
WARNING, no entry stored in dbm for [ENSG00000226419.8]
WARNING, no entry stored in dbm for [ENSG00000286818.1]
WARNING, no entry stored in dbm for [ENSG00000224523.1]
WARNING, no entry stored in dbm for [ENSG00000234899.11]
WARNING, no entry stored in dbm for [ENSG00000232328.3]
WARNING, no entry stored in dbm for [ENSG00000230423.3]
WARNING, no entry stored in dbm for [ENSG00000248445.5]
WARNING, no entry stored in dbm for [ENSG00000285269.2]
WARNING, no entry stored in dbm for [ENSG00000218175.2]
WARNING, no entry stored in dbm for [ENSG00000252481.1]
WARNING, no entry stored in dbm for [ENSG00000240137.6]
WARNING, no entry stored in dbm for [ENSG00000231894.2]
WARNING, no entry stored in dbm for [ENSG00000125804.14]
WARNING, no entry stored in dbm for [ENSG00000227681.5]
WARNING, no entry stored in dbm for [ENSG00000230711.2]
WARNING, no entry stored in dbm for [ENSG00000272030.1]
WARNING, no entry stored in dbm for [ENSG00000254480.2]
WARNING, no entry stored in dbm for [ENSG00000242607.1]
WARNING, no entry stored in dbm for [ENSG00000214184.3]
WARNING, no entry stored in dbm for [ENSG00000244134.1]
WARNING, no entry stored in dbm for [ENSG00000218565.2]
WARNING, no entry stored in dbm for [ENSG00000214485.6]
WARNING, no entry stored in dbm for [ENSG00000223508.5]
WARNING, no entry stored in dbm for [ENSG00000229152.2]
WARNING, no entry stored in dbm for [ENSG00000233445.1]
WARNING, no entry stored in dbm for [ENSG00000207205.1]
WARNING, no entry stored in dbm for [ENSG00000222414.1]
WARNING, no entry stored in dbm for [ENSG00000199402.1]
WARNING, no entry stored in dbm for [ENSG00000243954.3]
WARNING, no entry stored in dbm for [ENSG00000240490.3]
WARNING, no entry stored in dbm for [ENSG00000244230.3]
WARNING, no entry stored in dbm for [ENSG00000269900.3]
WARNING, no entry stored in dbm for [ENSG00000231259.5]
WARNING, no entry stored in dbm for [ENSG00000232283.1]
WARNING, no entry stored in dbm for [ENSG00000213963.6]
WARNING, no entry stored in dbm for [ENSG00000154608.14]
WARNING, no entry stored in dbm for [ENSG00000233237.8]
WARNING, no entry stored in dbm for [ENSG00000285835.1]
WARNING, no entry stored in dbm for [ENSG00000254422.1]
WARNING, no entry stored in dbm for [ENSG00000267122.1]
WARNING, no entry stored in dbm for [ENSG00000258739.1]
WARNING, no entry stored in dbm for [ENSG00000213553.4]
WARNING, no entry stored in dbm for [ENSG00000228031.4]
WARNING, no entry stored in dbm for [ENSG00000269907.1]
WARNING, no entry stored in dbm for [ENSG00000230487.8]
WARNING, no entry stored in dbm for [ENSG00000204261.9]
WARNING, no entry stored in dbm for [ENSG00000257621.8]
WARNING, no entry stored in dbm for [ENSG00000258609.3]
WARNING, no entry stored in dbm for [ENSG00000262879.6]
WARNING, no entry stored in dbm for [ENSG00000259205.2]
WARNING, no entry stored in dbm for [ENSG00000236714.3]
WARNING, no entry stored in dbm for [ENSG00000250842.1]
WARNING, no entry stored in dbm for [ENSG00000229739.4]
WARNING, no entry stored in dbm for [ENSG00000233532.6]
WARNING, no entry stored in dbm for [ENSG00000228940.1]
WARNING, no entry stored in dbm for [ENSG00000261143.1]
WARNING, no entry stored in dbm for [ENSG00000267432.6]
WARNING, no entry stored in dbm for [ENSG00000287739.1]
WARNING, no entry stored in dbm for [ENSG00000244257.5]
WARNING, no entry stored in dbm for [ENSG00000206573.9]
WARNING, no entry stored in dbm for [ENSG00000213277.3]
WARNING, no entry stored in dbm for [ENSG00000233437.1]
WARNING, no entry stored in dbm for [ENSG00000185485.14]
WARNING, no entry stored in dbm for [ENSG00000238040.1]
WARNING, no entry stored in dbm for [ENSG00000239883.8]
WARNING, no entry stored in dbm for [ENSG00000234577.1]
WARNING, no entry stored in dbm for [ENSG00000244479.7]
WARNING, no entry stored in dbm for [ENSG00000272595.2]
WARNING, no entry stored in dbm for [ENSG00000223482.8]
WARNING, no entry stored in dbm for [ENSG00000223482.8]
WARNING, no entry stored in dbm for [ENSG00000232230.1]
WARNING, no entry stored in dbm for [ENSG00000258479.6]
WARNING, no entry stored in dbm for [ENSG00000249619.1]
WARNING, no entry stored in dbm for [ENSG00000271204.1]
WARNING, no entry stored in dbm for [ENSG00000255226.2]
WARNING, no entry stored in dbm for [ENSG00000262248.1]
WARNING, no entry stored in dbm for [ENSG00000237296.9]
WARNING, no entry stored in dbm for [ENSG00000265489.1]
WARNING, no entry stored in dbm for [ENSG00000198496.12]
WARNING, no entry stored in dbm for [ENSG00000270231.4]
WARNING, no entry stored in dbm for [ENSG00000205449.11]
WARNING, no entry stored in dbm for [ENSG00000227001.3]
WARNING, no entry stored in dbm for [ENSG00000179978.11]
WARNING, no entry stored in dbm for [ENSG00000254701.3]
WARNING, no entry stored in dbm for [ENSG00000228224.3]
WARNING, no entry stored in dbm for [ENSG00000232855.7]
WARNING, no entry stored in dbm for [ENSG00000236051.7]
WARNING, no entry stored in dbm for [ENSG00000239649.3]
WARNING, no entry stored in dbm for [ENSG00000225872.4]
WARNING, no entry stored in dbm for [ENSG00000283426.1]
WARNING, no entry stored in dbm for [ENSG00000230082.1]
WARNING, no entry stored in dbm for [ENSG00000285106.2]
WARNING, no entry stored in dbm for [ENSG00000237336.1]
WARNING, no entry stored in dbm for [ENSG00000214955.5]
WARNING, no entry stored in dbm for [ENSG00000231154.1]
WARNING, no entry stored in dbm for [ENSG00000245832.7]
WARNING, no entry stored in dbm for [ENSG00000233006.8]
WARNING, no entry stored in dbm for [ENSG00000228526.7]
WARNING, no entry stored in dbm for [ENSG00000186594.14]
WARNING, no entry stored in dbm for [ENSG00000270069.1]
WARNING, no entry stored in dbm for [ENSG00000255248.9]
WARNING, no entry stored in dbm for [ENSG00000257279.1]
WARNING, no entry stored in dbm for [ENSG00000274775.2]
WARNING, no entry stored in dbm for [ENSG00000228109.1]
WARNING, no entry stored in dbm for [ENSG00000286787.1]
WARNING, no entry stored in dbm for [ENSG00000275194.1]
WARNING, no entry stored in dbm for [ENSG00000237296.9]
WARNING, no entry stored in dbm for [ENSG00000242529.1]
WARNING, no entry stored in dbm for [ENSG00000229088.1]
WARNING, no entry stored in dbm for [ENSG00000247675.7]
WARNING, no entry stored in dbm for [ENSG00000232527.8]
WARNING, no entry stored in dbm for [ENSG00000272779.1]
WARNING, no entry stored in dbm for [ENSG00000285737.1]
WARNING, no entry stored in dbm for [ENSG00000215244.3]
WARNING, no entry stored in dbm for [ENSG00000241288.8]
WARNING, no entry stored in dbm for [ENSG00000251129.2]
WARNING, no entry stored in dbm for [ENSG00000248238.2]
WARNING, no entry stored in dbm for [ENSG00000238042.5]
WARNING, no entry stored in dbm for [ENSG00000238042.5]
WARNING, no entry stored in dbm for [ENSG00000261175.6]
WARNING, no entry stored in dbm for [ENSG00000223382.5]
WARNING, no entry stored in dbm for [ENSG00000232679.2]
WARNING, no entry stored in dbm for [ENSG00000230202.1]
WARNING, no entry stored in dbm for [ENSG00000253161.5]
WARNING, no entry stored in dbm for [ENSG00000232560.7]
WARNING, no entry stored in dbm for [ENSG00000255171.7]
WARNING, no entry stored in dbm for [ENSG00000237491.10]
WARNING, no entry stored in dbm for [ENSG00000236204.6]
WARNING, no entry stored in dbm for [ENSG00000215866.8]
WARNING, no entry stored in dbm for [ENSG00000223823.1]
WARNING, no entry stored in dbm for [ENSG00000228262.10]
WARNING, no entry stored in dbm for [ENSG00000236751.2]
WARNING, no entry stored in dbm for [ENSG00000231689.2]
WARNING, no entry stored in dbm for [ENSG00000242516.2]
WARNING, no entry stored in dbm for [ENSG00000188825.14]
WARNING, no entry stored in dbm for [ENSG00000225269.3]
WARNING, no entry stored in dbm for [ENSG00000231419.6]
WARNING, no entry stored in dbm for [ENSG00000215483.11]
WARNING, no entry stored in dbm for [ENSG00000215483.11]
WARNING, no entry stored in dbm for [ENSG00000153363.13]
WARNING, no entry stored in dbm for [ENSG00000231721.7]
WARNING, no entry stored in dbm for [ENSG00000203809.7]
WARNING, no entry stored in dbm for [ENSG00000277268.2]
WARNING, no entry stored in dbm for [ENSG00000267040.6]
WARNING, no entry stored in dbm for [ENSG00000197536.11]
WARNING, no entry stored in dbm for [ENSG00000233930.4]
WARNING, no entry stored in dbm for [ENSG00000286948.1]
WARNING, no entry stored in dbm for [ENSG00000250686.2]
WARNING, no entry stored in dbm for [ENSG00000269821.1]
WARNING, no entry stored in dbm for [ENSG00000237978.6]
WARNING, no entry stored in dbm for [ENSG00000237978.6]
WARNING, no entry stored in dbm for [ENSG00000257752.1]
WARNING, no entry stored in dbm for [ENSG00000225470.8]
WARNING, no entry stored in dbm for [ENSG00000205682.2]
WARNING, no entry stored in dbm for [ENSG00000271943.2]
WARNING, no entry stored in dbm for [ENSG00000235934.2]
WARNING, no entry stored in dbm for [ENSG00000223503.1]
WARNING, no entry stored in dbm for [ENSG00000244627.5]
WARNING, no entry stored in dbm for [ENSG00000279207.1]
WARNING, no entry stored in dbm for [ENSG00000227733.10]
WARNING, no entry stored in dbm for [ENSG00000264964.2]
WARNING, no entry stored in dbm for [ENSG00000288663.1]
WARNING, no entry stored in dbm for [ENSG00000224078.15]
WARNING, no entry stored in dbm for [ENSG00000213924.3]
WARNING, no entry stored in dbm for [ENSG00000229391.7]
WARNING, no entry stored in dbm for [ENSG00000226030.1]
WARNING, no entry stored in dbm for [ENSG00000253557.6]
WARNING, no entry stored in dbm for [ENSG00000234801.3]
WARNING, no entry stored in dbm for [ENSG00000253816.3]
WARNING, no entry stored in dbm for [ENSG00000244383.2]
WARNING, no entry stored in dbm for [ENSG00000198237.8]
WARNING, no entry stored in dbm for [ENSG00000224458.3]
WARNING, no entry stored in dbm for [ENSG00000234945.8]
WARNING, no entry stored in dbm for [ENSG00000234945.8]
WARNING, no entry stored in dbm for [ENSG00000227038.3]
WARNING, no entry stored in dbm for [ENSG00000230189.7]
WARNING, no entry stored in dbm for [ENSG00000259683.1]
WARNING, no entry stored in dbm for [ENSG00000214433.4]
WARNING, no entry stored in dbm for [ENSG00000229608.1]
WARNING, no entry stored in dbm for [ENSG00000254349.6]
WARNING, no entry stored in dbm for [ENSG00000259605.3]
WARNING, no entry stored in dbm for [ENSG00000254681.6]
WARNING, no entry stored in dbm for [ENSG00000254398.1]
WARNING, no entry stored in dbm for [ENSG00000149531.15]
WARNING, no entry stored in dbm for [ENSG00000287055.1]
WARNING, no entry stored in dbm for [ENSG00000215483.11]
WARNING, no entry stored in dbm for [ENSG00000215483.11]
WARNING, no entry stored in dbm for [ENSG00000234983.1]
WARNING, no entry stored in dbm for [ENSG00000237296.9]
WARNING, no entry stored in dbm for [ENSG00000197847.12]
WARNING, no entry stored in dbm for [ENSG00000232702.3]
WARNING, no entry stored in dbm for [ENSG00000176236.6]
WARNING, no entry stored in dbm for [ENSG00000266179.2]
WARNING, no entry stored in dbm for [ENSG00000206623.1]
WARNING, no entry stored in dbm for [ENSG00000244383.2]
WARNING, no entry stored in dbm for [ENSG00000231528.3]
WARNING, no entry stored in dbm for [ENSG00000236438.7]
WARNING, no entry stored in dbm for [ENSG00000244380.1]
WARNING, no entry stored in dbm for [ENSG00000170919.16]
WARNING, no entry stored in dbm for [ENSG00000256995.8]
WARNING, no entry stored in dbm for [ENSG00000235558.3]
WARNING, no entry stored in dbm for [ENSG00000262899.1]
WARNING, no entry stored in dbm for [ENSG00000264044.1]
WARNING, no entry stored in dbm for [ENSG00000288545.1]
WARNING, no entry stored in dbm for [ENSG00000254842.6]
WARNING, no entry stored in dbm for [ENSG00000226472.8]
WARNING, no entry stored in dbm for [ENSG00000270111.3]
WARNING, no entry stored in dbm for [ENSG00000257303.2]
WARNING, no entry stored in dbm for [ENSG00000244306.11]
WARNING, no entry stored in dbm for [ENSG00000232679.2]
WARNING, no entry stored in dbm for [ENSG00000227591.5]
WARNING, no entry stored in dbm for [ENSG00000199735.1]
WARNING, no entry stored in dbm for [ENSG00000243508.1]
WARNING, no entry stored in dbm for [ENSG00000234577.1]
WARNING, no entry stored in dbm for [ENSG00000226101.2]
WARNING, no entry stored in dbm for [ENSG00000260261.2]
WARNING, no entry stored in dbm for [ENSG00000235908.1]
WARNING, no entry stored in dbm for [ENSG00000242338.6]
WARNING, no entry stored in dbm for [ENSG00000280145.3]
WARNING, no entry stored in dbm for [ENSG00000271029.1]
WARNING, no entry stored in dbm for [ENSG00000227684.2]
WARNING, no entry stored in dbm for [ENSG00000246695.8]
WARNING, no entry stored in dbm for [ENSG00000279539.1]
WARNING, no entry stored in dbm for [ENSG00000245651.3]
WARNING, no entry stored in dbm for [ENSG00000168405.17]
WARNING, no entry stored in dbm for [ENSG00000281903.2]
WARNING, no entry stored in dbm for [ENSG00000227617.9]
WARNING, no entry stored in dbm for [ENSG00000227676.4]
WARNING, no entry stored in dbm for [ENSG00000277599.1]
WARNING, no entry stored in dbm for [ENSG00000237214.3]
WARNING, no entry stored in dbm for [ENSG00000286277.1]
WARNING, no entry stored in dbm for [ENSG00000154874.15]
WARNING, no entry stored in dbm for [ENSG00000154874.15]
WARNING, no entry stored in dbm for [ENSG00000200064.1]
WARNING, no entry stored in dbm for [ENSG00000252316.1]
WARNING, no entry stored in dbm for [ENSG00000234945.8]
WARNING, no entry stored in dbm for [ENSG00000249375.8]
WARNING, no entry stored in dbm for [ENSG00000280166.1]
WARNING, no entry stored in dbm for [ENSG00000288596.2]
WARNING, no entry stored in dbm for [ENSG00000231698.2]
WARNING, no entry stored in dbm for [ENSG00000188511.12]
WARNING, no entry stored in dbm for [ENSG00000205885.7]
WARNING, no entry stored in dbm for [ENSG00000280424.1]
WARNING, no entry stored in dbm for [ENSG00000216657.1]
WARNING, no entry stored in dbm for [ENSG00000228355.1]
WARNING, no entry stored in dbm for [ENSG00000287952.1]
WARNING, no entry stored in dbm for [ENSG00000245954.8]
WARNING, no entry stored in dbm for [ENSG00000286156.1]
WARNING, no entry stored in dbm for [ENSG00000237238.3]
WARNING, no entry stored in dbm for [ENSG00000233967.7]
WARNING, no entry stored in dbm for [ENSG00000178977.3]
WARNING, no entry stored in dbm for [ENSG00000283317.1]
WARNING, no entry stored in dbm for [ENSG00000283360.1]
WARNING, no entry stored in dbm for [ENSG00000263934.5]
WARNING, no entry stored in dbm for [ENSG00000260896.6]
WARNING, no entry stored in dbm for [ENSG00000228782.7]
WARNING, no entry stored in dbm for [ENSG00000251250.3]
WARNING, no entry stored in dbm for [ENSG00000235437.8]
WARNING, no entry stored in dbm for [ENSG00000250519.7]
WARNING, no entry stored in dbm for [ENSG00000226043.2]
WARNING, no entry stored in dbm for [ENSG00000255028.5]
WARNING, no entry stored in dbm for [ENSG00000179362.14]
WARNING, no entry stored in dbm for [ENSG00000236375.3]
WARNING, no entry stored in dbm for [ENSG00000259763.2]
WARNING, no entry stored in dbm for [ENSG00000230596.3]
WARNING, no entry stored in dbm for [ENSG00000203999.9]
WARNING, no entry stored in dbm for [ENSG00000248671.8]
WARNING, no entry stored in dbm for [ENSG00000245025.3]
WARNING, no entry stored in dbm for [ENSG00000237094.12]
WARNING, no entry stored in dbm for [ENSG00000282572.2]
WARNING, no entry stored in dbm for [ENSG00000225532.1]
WARNING, no entry stored in dbm for [ENSG00000270094.1]
WARNING, no entry stored in dbm for [ENSG00000225233.2]
WARNING, no entry stored in dbm for [ENSG00000218418.2]
WARNING, no entry stored in dbm for [ENSG00000285570.1]
WARNING, no entry stored in dbm for [ENSG00000225096.3]
WARNING, no entry stored in dbm for [ENSG00000225096.3]
WARNING, no entry stored in dbm for [ENSG00000260404.3]
WARNING, no entry stored in dbm for [ENSG00000224635.2]
WARNING, no entry stored in dbm for [ENSG00000286215.1]
WARNING, no entry stored in dbm for [ENSG00000231616.9]
WARNING, no entry stored in dbm for [ENSG00000286811.1]
WARNING, no entry stored in dbm for [ENSG00000243155.1]
WARNING, no entry stored in dbm for [ENSG00000230779.1]
WARNING, no entry stored in dbm for [ENSG00000226842.1]
WARNING, no entry stored in dbm for [ENSG00000226987.1]
WARNING, no entry stored in dbm for [ENSG00000228436.3]
WARNING, no entry stored in dbm for [ENSG00000286871.1]
WARNING, no entry stored in dbm for [ENSG00000277358.1]
WARNING, no entry stored in dbm for [ENSG00000244471.6]
WARNING, no entry stored in dbm for [ENSG00000286417.1]
WARNING, no entry stored in dbm for [ENSG00000287569.1]
WARNING, no entry stored in dbm for [ENSG00000236173.1]
WARNING, no entry stored in dbm for [ENSG00000247317.3]
WARNING, no entry stored in dbm for [ENSG00000287920.1]
WARNING, no entry stored in dbm for [ENSG00000230912.1]
WARNING, no entry stored in dbm for [ENSG00000267312.1]
WARNING, no entry stored in dbm for [ENSG00000237296.9]
WARNING, no entry stored in dbm for [ENSG00000230869.1]
WARNING, no entry stored in dbm for [ENSG00000272140.2]
WARNING, no entry stored in dbm for [ENSG00000272620.2]
WARNING, no entry stored in dbm for [ENSG00000253500.6]
WARNING, no entry stored in dbm for [ENSG00000230606.11]
WARNING, no entry stored in dbm for [ENSG00000284671.1]
WARNING, no entry stored in dbm for [ENSG00000264876.2]
WARNING, no entry stored in dbm for [ENSG00000266931.2]
WARNING, no entry stored in dbm for [ENSG00000237017.1]
WARNING, no entry stored in dbm for [ENSG00000276216.1]
WARNING, no entry stored in dbm for [ENSG00000285184.3]
WARNING, no entry stored in dbm for [ENSG00000284964.1]
WARNING, no entry stored in dbm for [ENSG00000280136.2]
WARNING, no entry stored in dbm for [ENSG00000228463.10]
WARNING, no entry stored in dbm for [ENSG00000280136.2]
WARNING, no entry stored in dbm for [ENSG00000280828.1]
WARNING, no entry stored in dbm for [ENSG00000277702.1]
WARNING, no entry stored in dbm for [ENSG00000203825.4]
WARNING, no entry stored in dbm for [ENSG00000280114.1]
WARNING, no entry stored in dbm for [ENSG00000260157.3]
WARNING, no entry stored in dbm for [ENSG00000236698.1]
WARNING, no entry stored in dbm for [ENSG00000277125.1]
WARNING, no entry stored in dbm for [ENSG00000277125.1]
WARNING, no entry stored in dbm for [ENSG00000277125.1]
WARNING, no entry stored in dbm for [ENSG00000277125.1]
WARNING, no entry stored in dbm for [ENSG00000242073.2]
WARNING, no entry stored in dbm for [ENSG00000242073.2]
WARNING, no entry stored in dbm for [ENSG00000230305.2]
WARNING, no entry stored in dbm for [ENSG00000286710.1]
WARNING, no entry stored in dbm for [ENSG00000249592.6]
WARNING, no entry stored in dbm for [ENSG00000262049.1]
WARNING, no entry stored in dbm for [ENSG00000272219.1]
WARNING, no entry stored in dbm for [ENSG00000250909.1]
WARNING, no entry stored in dbm for [ENSG00000233597.3]
WARNING, no entry stored in dbm for [ENSG00000232172.1]
WARNING, no entry stored in dbm for [ENSG00000287567.1]
WARNING, no entry stored in dbm for [ENSG00000260756.1]
WARNING, no entry stored in dbm for [ENSG00000245281.8]
WARNING, no entry stored in dbm for [ENSG00000223503.1]
WARNING, no entry stored in dbm for [ENSG00000284675.1]
WARNING, no entry stored in dbm for [ENSG00000235421.1]
WARNING, no entry stored in dbm for [ENSG00000173209.23]
WARNING, no entry stored in dbm for [ENSG00000254186.3]
WARNING, no entry stored in dbm for [ENSG00000244675.2]
WARNING, no entry stored in dbm for [ENSG00000261302.6]
WARNING, no entry stored in dbm for [ENSG00000260144.1]
WARNING, no entry stored in dbm for [ENSG00000241593.5]
WARNING, no entry stored in dbm for [ENSG00000277096.1]
WARNING, no entry stored in dbm for [ENSG00000242622.2]
WARNING, no entry stored in dbm for [ENSG00000256625.1]
WARNING, no entry stored in dbm for [ENSG00000225209.2]
WARNING, no entry stored in dbm for [ENSG00000268362.6]
WARNING, no entry stored in dbm for [ENSG00000261471.1]
WARNING, no entry stored in dbm for [ENSG00000283849.1]
WARNING, no entry stored in dbm for [ENSG00000285035.1]
WARNING, no entry stored in dbm for [ENSG00000257239.1]
WARNING, no entry stored in dbm for [ENSG00000280828.1]
WARNING, no entry stored in dbm for [ENSG00000280828.1]
WARNING, no entry stored in dbm for [ENSG00000250869.2]
WARNING, no entry stored in dbm for [ENSG00000284698.1]
WARNING, no entry stored in dbm for [ENSG00000270228.1]
WARNING, no entry stored in dbm for [ENSG00000287022.1]
WARNING, no entry stored in dbm for [ENSG00000261501.1]
WARNING, no entry stored in dbm for [ENSG00000228031.4]
WARNING, no entry stored in dbm for [ENSG00000259605.3]
WARNING, no entry stored in dbm for [ENSG00000234129.8]
WARNING, no entry stored in dbm for [ENSG00000234129.8]
WARNING, no entry stored in dbm for [ENSG00000239985.2]
WARNING, no entry stored in dbm for [ENSG00000239985.2]
WARNING, no entry stored in dbm for [ENSG00000286466.1]
WARNING, no entry stored in dbm for [ENSG00000253619.1]
WARNING, no entry stored in dbm for [ENSG00000259299.1]
WARNING, no entry stored in dbm for [ENSG00000267002.4]
WARNING, no entry stored in dbm for [ENSG00000250220.1]
WARNING, no entry stored in dbm for [ENSG00000261837.1]
WARNING, no entry stored in dbm for [ENSG00000262903.1]
WARNING, no entry stored in dbm for [ENSG00000242880.2]
WARNING, no entry stored in dbm for [ENSG00000267277.1]
WARNING, no entry stored in dbm for [ENSG00000285600.1]
WARNING, no entry stored in dbm for [ENSG00000254031.6]
WARNING, no entry stored in dbm for [ENSG00000286752.1]
WARNING, no entry stored in dbm for [ENSG00000268093.1]
WARNING, no entry stored in dbm for [ENSG00000273007.2]
WARNING, no entry stored in dbm for [ENSG00000269982.1]
WARNING, no entry stored in dbm for [ENSG00000270964.1]
WARNING, no entry stored in dbm for [ENSG00000232386.9]
WARNING, no entry stored in dbm for [ENSG00000282863.1]
WARNING, no entry stored in dbm for [ENSG00000203327.2]
WARNING, no entry stored in dbm for [ENSG00000262732.1]
WARNING, no entry stored in dbm for [ENSG00000260788.6]
WARNING, no entry stored in dbm for [ENSG00000257403.2]
WARNING, no entry stored in dbm for [ENSG00000257403.2]
WARNING, no entry stored in dbm for [ENSG00000189149.12]
WARNING, no entry stored in dbm for [ENSG00000223536.6]
WARNING, no entry stored in dbm for [ENSG00000280007.1]
WARNING, no entry stored in dbm for [ENSG00000225790.2]
WARNING, no entry stored in dbm for [ENSG00000248015.7]
WARNING, no entry stored in dbm for [ENSG00000230305.2]
WARNING, no entry stored in dbm for [ENSG00000214243.3]
WARNING, no entry stored in dbm for [ENSG00000205485.13]
WARNING, no entry stored in dbm for [ENSG00000241057.2]
WARNING, no entry stored in dbm for [ENSG00000241057.2]
WARNING, no entry stored in dbm for [ENSG00000239556.4]
WARNING, no entry stored in dbm for [ENSG00000254610.3]
WARNING, no entry stored in dbm for [ENSG00000254610.3]
WARNING, no entry stored in dbm for [ENSG00000249188.1]
WARNING, no entry stored in dbm for [ENSG00000254610.3]
WARNING, no entry stored in dbm for [ENSG00000255367.3]
WARNING, no entry stored in dbm for [ENSG00000228204.2]
WARNING, no entry stored in dbm for [ENSG00000239556.4]
WARNING, no entry stored in dbm for [ENSG00000257433.6]
WARNING, no entry stored in dbm for [ENSG00000228113.7]
WARNING, no entry stored in dbm for [ENSG00000267328.1]
WARNING, no entry stored in dbm for [ENSG00000119440.8]


	* STAR-Fusion complete.  See output: /tmp/nxf.yOP1RrduOk/./star-fusion.fusion_predictions.tsv (or .abridged.tsv version)