[W::hts_idx_load3] The index file is older than the data file: 659_bhK-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	410280980
Known Splicing Events:	407035245
Partial Novel Splicing Events:	1714764
Novel Splicing Events:	1427458
Filtered Splicing Events:	103513

Total splicing  Junctions:	495558
Known Splicing Junctions:	263916
Partial Novel Splicing Junctions:	134633
Novel Splicing Junctions:	97009

===================================================================
Create BED file ...
Create Interact file ...