Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c6/83e50495b73c306a8b5644ba3f097e/659_bhK-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1a/f73a0e22861201cc7c5cccf07ed1b4/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/32/3c6ac9683db876ee99879f5d70d45c/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/32/3c6ac9683db876ee99879f5d70d45c/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2b/0c7cad2d417e61895abda76f57b0a5/659_bhK-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 410280980
[W::hts_idx_load3] The index file is older than the data file: 659_bhK-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	410280980
Known Splicing Events:	407035245
Partial Novel Splicing Events:	1714764
Novel Splicing Events:	1427458
Filtered Splicing Events:	103513

Total splicing  Junctions:	495558
Known Splicing Junctions:	263916
Partial Novel Splicing Junctions:	134633
Novel Splicing Junctions:	97009

===================================================================
Create BED file ...
Create Interact file ...