Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e9/0af5486f4dc6f9e76f0f56b6af1e8f/659_bNS-T1-TRNA-1_A23MVY2LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/78/48d9519820c7215969cb739f1ffe21/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/78/48d9519820c7215969cb739f1ffe21/.command.run
==> STAGING COMPLETE (3 inputs)

PAIRED_END_BAM_INPUT
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paired = 291294333
unpaired = 6274699
MERGED PAIRED END READS = 291294333
MATES PROCESSED = 588863365
TOTAL READS     = 297569032
DISTINCT READS  = 1.20105e+08
DISTINCT COUNTS = 1209
MAX COUNT       = 1401707
COUNTS OF 1     = 5.60111e+07
MAX TERMS       = 100
OBSERVED COUNTS (1401708)
1	56011109
2	28813438
3	15136829
4	8010271
5	4362096
6	2483222
7	1487637
8	942175
9	626592
10	435115
11	313305
12	233204
13	178687
14	140266
15	112189
16	92057
17	76183
18	63733
19	53833
20	46569
21	40313
22	35418
23	30901
24	27376
25	24340
26	21867
27	19568
28	17865
29	16011
30	14248
31	13054
32	12072
33	10975
34	10381
35	9406
36	8706
37	8077
38	7500
39	7017
40	6623
41	6114
42	5585
43	5266
44	4896
45	4672
46	4465
47	4199
48	3918
49	3647
50	3434
51	3278
52	3200
53	2970
54	2798
55	2631
56	2538
57	2429
58	2433
59	2194
60	2151
61	2078
62	1944
63	1888
64	1862
65	1668
66	1697
67	1568
68	1520
69	1443
70	1445
71	1315
72	1248
73	1176
74	1212
75	1216
76	1085
77	1093
78	1032
79	1048
80	1008
81	965
82	929
83	854
84	812
85	805
86	781
87	773
88	715
89	748
90	707
91	675
92	650
93	656
94	663
95	630
96	602
97	573
98	585
99	503
100	501
101	577
102	479
103	503
104	447
105	434
106	452
107	439
108	469
109	429
110	407
111	404
112	370
113	378
114	401
115	368
116	321
117	344
118	356
119	325
120	370
121	308
122	314
123	290
124	289
125	289
126	273
127	288
128	270
129	238
130	242
131	244
132	252
133	232
134	235
135	235
136	233
137	221
138	241
139	207
140	202
141	187
142	177
143	189
144	184
145	183
146	185
147	184
148	194
149	190
150	171
151	166
152	172
153	175
154	158
155	150
156	147
157	162
158	147
159	151
160	147
161	146
162	149
163	133
164	134
165	140
166	143
167	131
168	121
169	105
170	121
171	128
172	115
173	118
174	105
175	127
176	119
177	100
178	117
179	106
180	98
181	97
182	82
183	101
184	96
185	94
186	92
187	95
188	95
189	86
190	82
191	97
192	83
193	74
194	91
195	69
196	75
197	77
198	81
199	68
200	62
201	90
202	80
203	65
204	63
205	61
206	84
207	62
208	66
209	72
210	62
211	60
212	64
213	69
214	74
215	73
216	67
217	77
218	81
219	66
220	58
221	52
222	48
223	65
224	56
225	60
226	53
227	59
228	58
229	57
230	38
231	50
232	47
233	46
234	49
235	45
236	43
237	46
238	45
239	44
240	45
241	42
242	49
243	51
244	45
245	48
246	42
247	53
248	46
249	51
250	49
251	48
252	34
253	36
254	52
255	34
256	32
257	36
258	48
259	28
260	37
261	34
262	35
263	28
264	20
265	40
266	27
267	31
268	33
269	30
270	45
271	34
272	43
273	29
274	34
275	25
276	26
277	40
278	39
279	26
280	30
281	32
282	19
283	28
284	31
285	32
286	26
287	22
288	18
289	19
290	30
291	24
292	23
293	25
294	18
295	29
296	32
297	31
298	24
299	18
300	31
301	19
302	19
303	25
304	14
305	20
306	20
307	25
308	25
309	16
310	25
311	25
312	19
313	19
314	18
315	20
316	21
317	18
318	16
319	26
320	21
321	19
322	20
323	21
324	19
325	19
326	20
327	18
328	8
329	18
330	20
331	22
332	18
333	17
334	13
335	18
336	15
337	18
338	19
339	23
340	15
341	14
342	22
343	15
344	13
345	24
346	17
347	19
348	17
349	15
350	20
351	18
352	14
353	14
354	17
355	15
356	19
357	12
358	15
359	16
360	19
361	19
362	15
363	11
364	13
365	16
366	8
367	15
368	12
369	7
370	19
371	13
372	11
373	9
374	16
375	17
376	13
377	14
378	9
379	7
380	13
381	14
382	16
383	11
384	13
385	18
386	10
387	14
388	13
389	7
390	8
391	11
392	6
393	17
394	10
395	10
396	8
397	12
398	10
399	7
400	7
401	16
402	9
403	10
404	9
405	10
406	8
407	8
408	12
409	6
410	5
411	12
412	9
413	15
414	10
415	10
416	15
417	11
418	9
419	10
420	13
421	12
422	12
423	10
424	12
425	11
426	7
427	5
428	7
429	10
430	4
431	12
432	14
433	16
434	8
435	4
436	8
437	11
438	6
439	10
440	18
441	7
442	10
443	5
444	9
445	9
446	8
447	9
448	3
449	9
450	6
451	2
452	10
453	8
454	5
455	6
456	10
457	7
458	4
459	8
460	6
461	9
462	5
463	7
464	4
465	7
466	6
467	5
468	1
469	4
470	7
471	11
472	7
473	6
474	8
475	6
476	3
477	10
478	9
479	4
480	6
481	12
482	8
483	10
484	4
485	3
486	6
487	6
488	7
489	9
490	5
491	7
492	5
493	7
494	3
495	3
496	6
497	5
498	6
499	5
500	6
501	4
502	7
503	5
504	2
505	4
506	4
507	4
508	7
509	4
510	6
511	3
512	5
513	5
514	4
515	6
516	6
517	5
518	7
519	7
520	5
521	2
522	8
523	6
524	6
525	5
526	4
527	5
528	3
529	7
530	6
532	4
533	1
534	6
535	5
536	4
537	4
538	6
539	5
540	2
541	4
542	3
543	4
544	3
545	3
546	1
547	4
548	4
549	4
550	2
551	4
552	4
553	2
554	2
555	5
556	2
557	3
558	3
559	3
560	5
561	5
562	7
563	5
564	6
565	1
566	6
567	6
568	5
569	3
570	4
571	1
572	3
573	1
574	3
575	3
576	2
577	3
578	4
579	3
580	4
581	5
582	6
583	8
584	3
585	1
586	3
587	1
588	2
589	5
590	2
591	4
592	2
593	4
594	1
595	6
596	4
597	1
598	1
599	1
600	9
601	2
602	1
603	5
604	3
605	3
606	2
607	5
608	1
609	4
610	3
611	4
612	4
613	2
614	3
616	1
617	3
618	3
619	3
620	2
621	1
622	5
623	2
624	3
625	2
626	2
627	4
628	3
629	1
630	1
631	4
632	7
633	2
634	3
635	2
636	5
637	5
638	2
639	3
640	2
643	3
644	3
645	2
646	1
647	6
648	2
649	2
650	1
651	1
652	3
653	4
654	2
655	3
658	3
661	3
662	4
663	2
664	2
665	1
666	2
667	4
668	2
669	2
670	1
673	3
675	4
676	1
677	2
678	1
680	5
681	4
683	2
684	3
685	3
686	2
688	2
689	3
690	2
691	1
692	2
693	4
695	5
696	2
697	1
698	3
699	3
700	1
701	3
702	2
703	3
704	5
706	3
707	3
708	2
710	4
711	2
712	2
713	2
714	1
715	3
716	2
717	1
720	1
721	2
722	3
723	2
724	2
725	1
726	2
727	1
728	3
729	4
730	1
731	1
733	4
734	4
736	4
737	4
738	2
739	3
740	1
741	3
742	6
743	1
745	2
746	1
747	2
748	2
749	3
750	5
751	4
752	2
753	2
754	1
755	3
756	1
757	2
758	1
759	1
761	1
762	1
763	2
764	6
765	1
768	2
769	1
770	4
772	3
773	2
775	2
776	1
777	1
778	1
781	1
782	1
783	1
785	1
786	1
788	1
789	1
790	5
791	2
792	2
793	3
794	1
795	1
796	2
797	1
798	4
799	1
800	3
802	1
804	2
805	2
807	1
810	1
811	2
812	1
813	1
814	2
815	1
817	1
818	1
821	1
822	1
823	3
824	1
825	1
826	3
827	2
828	1
829	1
832	2
833	1
835	2
837	2
838	1
839	2
841	1
842	1
843	1
844	1
845	2
848	1
849	2
850	1
853	2
854	2
855	1
856	1
857	2
858	1
860	2
863	2
864	3
865	2
868	1
870	2
873	1
874	1
876	2
878	1
879	1
881	3
883	1
884	4
887	1
889	2
890	1
891	1
892	1
893	2
894	1
895	2
896	1
897	1
898	1
900	1
901	2
902	1
904	1
906	2
907	1
908	1
909	1
911	1
914	1
915	1
916	1
917	2
921	1
922	2
926	3
929	1
930	1
931	1
932	2
934	1
941	3
942	1
944	1
946	1
950	1
951	1
956	1
957	1
958	1
960	1
964	1
965	3
967	1
968	3
969	1
972	1
973	1
974	1
975	1
976	2
977	2
978	2
982	1
983	1
984	1
985	1
988	2
991	1
997	1
1000	1
1001	4
1003	1
1006	1
1009	1
1010	1
1013	1
1015	1
1017	1
1019	1
1021	1
1022	2
1024	3
1026	2
1028	1
1031	1
1032	1
1033	1
1038	1
1039	1
1044	1
1046	1
1049	2
1050	1
1052	1
1057	1
1058	1
1059	2
1066	1
1070	1
1071	1
1072	1
1073	2
1075	1
1077	1
1080	1
1081	1
1086	3
1088	1
1094	1
1100	1
1101	2
1105	1
1106	1
1112	1
1115	1
1117	1
1121	1
1126	2
1129	1
1130	1
1134	1
1135	2
1137	2
1142	1
1143	1
1145	1
1147	3
1148	2
1149	1
1159	1
1174	1
1176	1
1180	1
1183	1
1187	1
1192	1
1195	1
1196	1
1201	1
1202	3
1209	1
1210	1
1211	1
1216	1
1220	1
1226	1
1227	1
1229	1
1230	3
1231	2
1235	1
1241	1
1253	1
1254	1
1259	2
1264	1
1266	1
1271	1
1272	1
1276	1
1278	1
1279	1
1281	3
1285	1
1288	1
1289	1
1292	2
1298	1
1299	1
1302	1
1308	1
1312	1
1313	1
1315	1
1318	1
1319	2
1320	1
1323	1
1324	1
1337	1
1338	1
1341	1
1344	2
1348	1
1350	1
1358	1
1368	2
1374	1
1382	1
1384	1
1385	1
1391	1
1395	1
1400	1
1403	1
1413	1
1419	1
1427	1
1434	1
1437	1
1440	1
1444	1
1448	1
1456	2
1458	1
1460	1
1462	1
1470	1
1471	1
1479	1
1482	1
1489	1
1490	2
1496	1
1502	1
1507	1
1509	1
1522	1
1525	1
1544	1
1549	1
1553	1
1557	1
1563	1
1569	1
1579	1
1581	1
1586	1
1596	1
1602	1
1605	1
1606	1
1611	1
1614	1
1621	1
1622	1
1639	1
1643	1
1652	1
1654	1
1668	1
1675	1
1676	1
1694	1
1695	1
1710	1
1729	1
1732	1
1738	1
1747	1
1752	1
1761	1
1765	1
1774	1
1777	1
1781	1
1795	1
1800	1
1806	1
1807	1
1810	1
1829	1
1834	1
1840	1
1842	1
1851	1
1853	1
1856	1
1866	1
1874	1
1889	1
1925	2
1927	1
1932	1
1956	1
1961	1
1965	1
1968	1
1969	1
1974	1
1982	1
1998	1
2007	1
2010	1
2020	1
2021	1
2034	1
2035	1
2037	1
2044	1
2046	1
2086	1
2090	2
2104	1
2120	1
2121	1
2124	1
2130	1
2139	2
2144	1
2148	1
2161	1
2170	1
2171	1
2175	1
2178	1
2191	1
2194	1
2198	1
2211	1
2213	1
2215	1
2216	1
2242	1
2256	1
2270	1
2308	1
2312	1
2318	2
2329	1
2390	1
2392	1
2397	1
2398	1
2407	1
2411	1
2426	1
2429	1
2434	1
2452	1
2456	1
2475	1
2481	1
2505	1
2575	1
2582	1
2583	1
2584	1
2585	1
2626	1
2698	1
2714	1
2752	1
2763	1
2779	1
2803	1
2808	1
2815	1
2826	1
2828	1
2834	1
2857	1
2938	1
2956	1
2978	1
3010	1
3070	1
3080	1
3082	1
3155	1
3162	1
3165	1
3193	1
3234	1
3243	1
3316	1
3403	1
3442	1
3498	1
3574	1
3714	1
3766	1
3863	1
3975	1
4179	1
4192	1
4342	1
4665	1
4877	1
4884	1
4924	1
5559	1
5941	1
6669	1
6750	1
7312	1
7473	1
8452	1
9491	1
15162	1
15612	1
58682	1
1401707	1

[ESTIMATING YIELD CURVE]
[BOOTSTRAPPING HISTOGRAM]
..._...._...........................__..................................
................................
[COMPUTING CONFIDENCE INTERVALS]
[WRITING OUTPUT]