[W::hts_idx_load3] The index file is older than the data file: 659_bGc-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	343364441
Known Splicing Events:	339299500
Partial Novel Splicing Events:	1977834
Novel Splicing Events:	1944075
Filtered Splicing Events:	143032

Total splicing  Junctions:	476930
Known Splicing Junctions:	256145
Partial Novel Splicing Junctions:	119467
Novel Splicing Junctions:	101318

===================================================================
Create BED file ...
Create Interact file ...