File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/63/05c6cb6130a12f0264d6c9d52fc02b/.command.log
Size
3.4 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (659_bhK-T1-TRNA-1_A23MVY2LT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c9/a9087b88d2c70bfacdcaf7c1fe4934/659_bhK-T1-TRNA-1_A23MVY2LT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bd/599826b39fe16d0d2ee589bf85db26/659_bhK-T1-TRNA-1_A23MVY2LT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-bba2394f-ea06-4038-829e-f0bb41c45b0f/67/1d6e211d8f66f1c89f8ec9083ff96d/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/63/05c6cb6130a12f0264d6c9d52fc02b/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/63/05c6cb6130a12f0264d6c9d52fc02b/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
==> STAGING COMPLETE (6 inputs)

Running application...
CCDC6--RET
starfusion
arriba
TLK2--AC240565.1
starfusion
TLK2P1--AC110079.1
starfusion
DNAJC1--C10orf143
starfusion
arriba
NEBL--CDK1
starfusion
arriba
ECHS1--NEBL
starfusion
arriba
PMS2P6--CCDC146
starfusion
STX16--NPEPL1
arriba
TVP23C--CDRT4
arriba
AC092807.3--DDAH1
arriba
KLRC4--KLRK1
arriba
TLK2--FAM157A
arriba

  0%|          | 0/12 [00:00<?, ?it/s]
Processing CCDC6--RET:   0%|          | 0/12 [00:00<?, ?it/s]
Processing CCDC6--RET:   8%|▊         | 1/12 [00:00<00:01,  9.24it/s]
Processing TLK2--AC240565.1:   8%|▊         | 1/12 [00:00<00:01,  9.24it/s]
Processing TLK2--AC240565.1:  17%|█▋        | 2/12 [00:00<00:01,  9.47it/s]
Processing TLK2P1--AC110079.1:  17%|█▋        | 2/12 [00:00<00:01,  9.47it/s]
Processing TLK2P1--AC110079.1:  25%|██▌       | 3/12 [00:00<00:00,  9.55it/s]
Processing DNAJC1--C10orf143:  25%|██▌       | 3/12 [00:00<00:00,  9.55it/s] 
Processing DNAJC1--C10orf143:  33%|███▎      | 4/12 [00:00<00:00,  9.59it/s]
Processing NEBL--CDK1:  33%|███▎      | 4/12 [00:00<00:00,  9.59it/s]       
Processing NEBL--CDK1:  42%|████▏     | 5/12 [00:00<00:00,  9.61it/s]
Processing ECHS1--NEBL:  42%|████▏     | 5/12 [00:00<00:00,  9.61it/s]
Processing ECHS1--NEBL:  50%|█████     | 6/12 [00:00<00:00,  9.62it/s]
Processing PMS2P6--CCDC146:  50%|█████     | 6/12 [00:00<00:00,  9.62it/s]
Processing PMS2P6--CCDC146:  58%|█████▊    | 7/12 [00:00<00:00,  9.63it/s]
Processing STX16--NPEPL1:  58%|█████▊    | 7/12 [00:00<00:00,  9.63it/s]  
Processing STX16--NPEPL1:  67%|██████▋   | 8/12 [00:00<00:00,  9.63it/s]
Processing TVP23C--CDRT4:  67%|██████▋   | 8/12 [00:00<00:00,  9.63it/s]
Processing TVP23C--CDRT4:  75%|███████▌  | 9/12 [00:00<00:00,  9.64it/s]
Processing AC092807.3--DDAH1:  75%|███████▌  | 9/12 [00:00<00:00,  9.64it/s]
Processing AC092807.3--DDAH1:  83%|████████▎ | 10/12 [00:01<00:00,  9.64it/s]
Processing KLRC4--KLRK1:  83%|████████▎ | 10/12 [00:01<00:00,  9.64it/s]     
Processing KLRC4--KLRK1:  92%|█████████▏| 11/12 [00:01<00:00,  9.64it/s]
Processing TLK2--FAM157A:  92%|█████████▏| 11/12 [00:01<00:00,  9.64it/s]
Processing TLK2--FAM157A: 100%|██████████| 12/12 [00:01<00:00,  9.64it/s]
Processing TLK2--FAM157A: 100%|██████████| 12/12 [00:01<00:00,  9.61it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory