Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0d/08673ee12ee6a0211e830547e14205/659_bCu-T1-TRNA-1_A23MVY2LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4c/4878c28d3bebd436e5dd9866541b2e/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4c/4878c28d3bebd436e5dd9866541b2e/.command.run
==> STAGING COMPLETE (3 inputs)

PAIRED_END_BAM_INPUT
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paired = 238003628
unpaired = 4896176
MERGED PAIRED END READS = 238003628
MATES PROCESSED = 480903432
TOTAL READS     = 242899804
DISTINCT READS  = 4.04088e+07
DISTINCT COUNTS = 914
MAX COUNT       = 1090381
COUNTS OF 1     = 9.34375e+06
MAX TERMS       = 100
OBSERVED COUNTS (1090382)
1	9343747
2	4844855
3	4028414
4	3543847
5	3092710
6	2657839
7	2243472
8	1867418
9	1538437
10	1258305
11	1020239
12	825396
13	668386
14	540625
15	438339
16	355493
17	292346
18	241157
19	200430
20	167391
21	141074
22	119029
23	102553
24	87878
25	76796
26	67181
27	59087
28	52198
29	46522
30	41317
31	36887
32	33104
33	29589
34	27176
35	23994
36	22029
37	20092
38	18110
39	16036
40	14916
41	13429
42	12211
43	11159
44	10243
45	9191
46	8500
47	7926
48	7065
49	6425
50	5959
51	5643
52	5205
53	4866
54	4427
55	4155
56	3748
57	3511
58	3347
59	3121
60	2973
61	2818
62	2560
63	2488
64	2380
65	2194
66	2110
67	1950
68	1885
69	1666
70	1644
71	1602
72	1586
73	1405
74	1434
75	1327
76	1211
77	1192
78	1212
79	1101
80	1010
81	1048
82	1025
83	949
84	923
85	886
86	839
87	778
88	787
89	765
90	730
91	687
92	663
93	630
94	578
95	619
96	587
97	585
98	533
99	480
100	475
101	494
102	473
103	438
104	443
105	418
106	433
107	409
108	385
109	407
110	356
111	354
112	348
113	308
114	360
115	306
116	301
117	308
118	295
119	301
120	268
121	255
122	253
123	259
124	269
125	248
126	250
127	215
128	223
129	230
130	220
131	221
132	211
133	181
134	195
135	192
136	177
137	186
138	172
139	153
140	149
141	138
142	156
143	169
144	144
145	142
146	152
147	157
148	148
149	132
150	118
151	128
152	121
153	123
154	115
155	122
156	108
157	98
158	102
159	103
160	90
161	96
162	108
163	109
164	93
165	90
166	87
167	96
168	88
169	91
170	63
171	88
172	80
173	98
174	87
175	74
176	72
177	73
178	81
179	66
180	82
181	58
182	73
183	55
184	66
185	65
186	52
187	64
188	72
189	61
190	57
191	55
192	56
193	58
194	65
195	47
196	64
197	54
198	63
199	42
200	56
201	54
202	45
203	60
204	46
205	43
206	50
207	38
208	46
209	41
210	46
211	35
212	40
213	54
214	28
215	36
216	39
217	35
218	47
219	38
220	49
221	40
222	32
223	41
224	44
225	34
226	36
227	26
228	36
229	32
230	46
231	28
232	47
233	34
234	28
235	42
236	40
237	28
238	30
239	31
240	29
241	31
242	24
243	22
244	28
245	20
246	31
247	26
248	30
249	28
250	28
251	16
252	24
253	19
254	21
255	26
256	25
257	26
258	28
259	22
260	27
261	19
262	18
263	27
264	28
265	27
266	21
267	24
268	18
269	28
270	16
271	21
272	18
273	19
274	20
275	26
276	19
277	18
278	12
279	16
280	7
281	15
282	14
283	18
284	13
285	19
286	8
287	14
288	21
289	15
290	12
291	15
292	13
293	21
294	20
295	8
296	19
297	7
298	15
299	11
300	18
301	16
302	19
303	14
304	15
305	20
306	20
307	17
308	7
309	16
310	14
311	14
312	14
313	8
314	22
315	17
316	15
317	8
318	15
319	8
320	12
321	8
322	8
323	9
324	17
325	16
326	13
327	12
328	9
329	12
330	7
331	13
332	8
333	9
334	8
335	12
336	12
337	15
338	5
339	21
340	12
341	18
342	7
343	3
344	8
345	11
346	13
347	11
348	8
349	10
350	13
351	14
352	5
353	10
354	11
355	12
356	7
357	12
358	9
359	10
360	8
361	7
362	9
363	4
364	6
365	6
366	9
367	9
368	8
369	7
370	10
371	9
372	8
373	4
374	5
375	6
376	10
377	11
378	6
379	6
380	5
381	6
382	3
383	7
384	9
385	10
386	6
387	6
388	9
389	7
390	7
391	3
392	9
393	3
394	5
395	8
396	4
397	5
398	4
399	7
400	10
401	6
402	8
403	7
404	6
405	7
406	4
407	6
408	7
409	4
410	6
411	3
412	8
413	7
414	2
415	5
416	4
417	3
418	4
419	4
420	5
421	5
422	6
423	2
424	5
425	5
426	2
427	3
428	2
429	3
430	6
431	5
432	9
433	7
434	9
435	1
436	1
437	2
438	6
439	5
440	1
441	5
442	2
443	6
444	1
445	5
446	3
447	7
448	7
449	4
450	3
451	3
452	2
453	2
454	6
455	4
456	4
457	7
458	2
459	2
460	3
461	4
462	2
463	4
464	4
465	5
466	5
467	4
468	1
469	3
470	4
471	3
472	4
473	1
474	2
475	5
476	4
477	6
478	5
479	5
480	1
481	6
482	3
483	1
484	5
485	2
486	1
487	4
488	3
489	3
490	1
491	1
492	4
493	2
494	3
495	3
496	1
497	4
498	5
499	7
500	3
501	3
502	3
503	4
504	2
505	2
506	3
507	2
508	3
509	3
511	2
512	2
513	2
514	5
515	2
516	4
517	3
518	1
519	1
520	4
521	2
523	1
524	1
525	1
526	2
527	3
528	4
529	3
530	3
531	3
532	1
533	5
534	2
535	1
536	2
538	1
539	1
540	1
541	1
542	3
546	4
547	1
548	5
549	3
550	1
551	1
552	1
553	3
554	2
555	1
556	1
557	5
558	1
560	5
562	5
563	3
564	1
565	4
566	2
567	1
568	1
569	3
570	5
571	3
572	5
573	1
574	3
575	2
576	2
577	1
578	1
579	3
580	2
581	1
582	4
585	3
586	3
587	1
588	4
590	2
591	2
595	3
596	3
598	1
599	3
601	3
602	3
603	3
604	2
605	2
606	1
607	2
608	1
609	1
610	4
611	1
612	2
613	2
614	1
615	3
617	1
618	4
621	1
622	3
623	1
624	4
625	3
626	2
627	1
629	1
632	5
634	1
635	1
636	3
638	3
639	1
641	2
643	1
645	1
646	3
648	1
649	1
650	2
651	1
652	4
655	2
656	3
658	1
659	1
661	3
662	2
663	1
664	1
665	1
666	1
667	4
670	1
673	3
674	1
675	1
676	3
680	1
683	1
684	1
685	1
688	3
689	1
691	2
692	3
694	1
698	1
700	2
702	3
703	1
704	2
705	2
706	1
708	2
709	1
710	1
711	1
714	2
715	1
716	1
720	1
722	2
725	2
728	2
729	1
730	1
731	1
732	1
737	1
738	2
739	2
742	2
744	1
748	5
750	1
753	1
756	1
758	1
759	1
760	1
763	1
764	1
770	2
772	1
777	1
778	2
779	1
780	1
784	1
785	1
787	1
788	1
790	1
793	1
795	2
797	2
799	1
800	1
804	1
807	1
808	1
813	1
815	1
817	1
818	1
821	2
827	3
828	1
831	1
832	1
833	1
834	2
835	1
836	1
841	1
844	2
846	2
847	2
848	1
850	1
851	1
852	2
856	1
860	1
862	2
864	2
865	1
867	1
868	1
870	1
871	1
872	1
874	1
876	1
878	1
883	1
884	2
885	1
887	1
891	1
892	1
894	1
897	2
898	2
899	1
909	1
914	1
917	1
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925	1
928	1
929	1
946	1
948	1
956	1
962	1
963	1
966	1
976	2
980	2
986	3
987	1
989	1
991	1
1002	1
1004	1
1010	2
1017	1
1021	1
1023	2
1032	1
1034	1
1036	1
1037	1
1041	1
1043	1
1070	1
1073	1
1075	1
1076	1
1086	1
1093	1
1094	1
1096	1
1108	1
1110	1
1113	1
1133	1
1138	1
1149	2
1150	1
1165	1
1169	1
1170	1
1179	1
1182	1
1189	1
1190	1
1196	1
1205	1
1214	1
1224	1
1226	1
1229	1
1243	1
1244	1
1264	1
1283	1
1284	1
1287	1
1293	2
1300	2
1312	1
1318	1
1327	1
1331	1
1335	1
1339	1
1349	2
1353	1
1359	1
1379	2
1381	1
1385	1
1393	1
1395	1
1401	1
1404	1
1411	1
1412	2
1425	2
1430	1
1446	3
1450	1
1460	1
1462	1
1502	1
1504	1
1505	1
1523	1
1539	2
1552	1
1557	1
1566	1
1601	1
1608	1
1609	1
1611	1
1620	1
1622	1
1630	1
1640	1
1648	1
1650	1
1655	1
1656	1
1667	1
1697	2
1717	1
1720	1
1730	1
1739	1
1754	1
1761	1
1796	1
1801	1
1815	1
1827	1
1947	1
1956	1
1963	1
1976	1
2006	1
2024	1
2077	1
2105	1
2106	1
2126	2
2140	1
2151	1
2275	1
2362	1
2368	1
2395	1
2405	2
2427	1
2445	1
2478	1
2496	1
2533	1
2546	1
2609	1
2616	1
2639	1
2641	1
2668	1
2685	1
2728	1
2775	1
2940	1
3056	1
3261	1
3627	1
3741	1
4462	1
5323	1
10627	1
10809	1
13027	1
37419	1
1090381	1

[ESTIMATING YIELD CURVE]
[BOOTSTRAPPING HISTOGRAM]
._._.._....__......__........_._.__._.._...._..........._.._.......__...
_......_._..._..._.._._......_..._._.._.._._....._._..._......
[COMPUTING CONFIDENCE INTERVALS]
[WRITING OUTPUT]