Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/aa/18fe20dd395ab631b4f57a91fcdb12/659_buD-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/90/e48f97b10a538eea2c2baf66e08c30/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/90/e48f97b10a538eea2c2baf66e08c30/.command.run
==> STAGING COMPLETE (3 inputs)

PAIRED_END_BAM_INPUT
Processed 1000000 records
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Processed 268000000 records
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Processed 277000000 records
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Processed 279000000 records
Processed 280000000 records
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Processed 285000000 records
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Processed 290000000 records
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Processed 340000000 records
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Processed 343000000 records
Processed 344000000 records
Processed 345000000 records
Processed 346000000 records
Processed 347000000 records
Processed 348000000 records
Processed 349000000 records
Processed 350000000 records
Processed 351000000 records
Processed 352000000 records
Processed 353000000 records
Processed 354000000 records
Processed 355000000 records
Processed 356000000 records
Processed 357000000 records
Processed 358000000 records
Processed 359000000 records
Processed 360000000 records
Processed 361000000 records
Processed 362000000 records
Processed 363000000 records
Processed 364000000 records
Processed 365000000 records
Processed 366000000 records
Processed 367000000 records
Processed 368000000 records
Processed 369000000 records
Processed 370000000 records
Processed 371000000 records
Processed 372000000 records
Processed 373000000 records
Processed 374000000 records
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Processed 376000000 records
Processed 377000000 records
Processed 378000000 records
Processed 379000000 records
Processed 380000000 records
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Processed 383000000 records
Processed 384000000 records
Processed 385000000 records
Processed 386000000 records
Processed 387000000 records
Processed 388000000 records
Processed 389000000 records
Processed 390000000 records
Processed 391000000 records
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Processed 396000000 records
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Processed 399000000 records
Processed 400000000 records
Processed 401000000 records
Processed 402000000 records
Processed 403000000 records
Processed 404000000 records
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Processed 419000000 records
Processed 420000000 records
Processed 421000000 records
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Processed 424000000 records
Processed 425000000 records
Processed 426000000 records
Processed 427000000 records
Processed 428000000 records
Processed 429000000 records
Processed 430000000 records
Processed 431000000 records
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Processed 433000000 records
Processed 434000000 records
Processed 435000000 records
Processed 436000000 records
Processed 437000000 records
Processed 438000000 records
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Processed 440000000 records
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Processed 443000000 records
Processed 444000000 records
Processed 445000000 records
Processed 446000000 records
paired = 220994950
unpaired = 4639732
MERGED PAIRED END READS = 220994950
MATES PROCESSED = 446629632
TOTAL READS     = 225634682
DISTINCT READS  = 9.35477e+07
DISTINCT COUNTS = 874
MAX COUNT       = 1043081
COUNTS OF 1     = 4.26605e+07
MAX TERMS       = 100
OBSERVED COUNTS (1043082)
1	42660458
2	22773314
3	12249707
4	6541254
5	3545640
6	1989800
7	1170209
8	721085
9	466969
10	316575
11	221490
12	160761
13	119126
14	90738
15	71185
16	56982
17	46278
18	37889
19	31685
20	27236
21	22957
22	19496
23	17089
24	15076
25	13244
26	11577
27	10410
28	9336
29	8388
30	7624
31	6781
32	6339
33	5674
34	5185
35	4724
36	4452
37	4054
38	3684
39	3392
40	3314
41	2954
42	2793
43	2632
44	2464
45	2247
46	2136
47	1968
48	1913
49	1906
50	1616
51	1632
52	1479
53	1361
54	1310
55	1277
56	1144
57	1103
58	1108
59	1075
60	994
61	848
62	961
63	826
64	809
65	738
66	763
67	757
68	682
69	671
70	630
71	638
72	594
73	575
74	531
75	488
76	460
77	526
78	419
79	450
80	413
81	428
82	437
83	359
84	423
85	366
86	368
87	347
88	314
89	321
90	306
91	323
92	321
93	289
94	304
95	267
96	273
97	231
98	267
99	245
100	202
101	215
102	211
103	216
104	213
105	195
106	204
107	203
108	193
109	185
110	163
111	190
112	163
113	166
114	166
115	158
116	158
117	130
118	136
119	132
120	156
121	131
122	125
123	137
124	132
125	122
126	115
127	111
128	111
129	109
130	123
131	100
132	92
133	109
134	119
135	105
136	111
137	100
138	85
139	91
140	104
141	102
142	89
143	74
144	67
145	90
146	71
147	56
148	83
149	77
150	72
151	74
152	74
153	63
154	71
155	66
156	64
157	63
158	60
159	64
160	55
161	63
162	60
163	48
164	53
165	64
166	42
167	49
168	50
169	53
170	66
171	57
172	47
173	54
174	53
175	55
176	48
177	53
178	49
179	53
180	33
181	42
182	35
183	40
184	33
185	24
186	34
187	44
188	45
189	41
190	27
191	37
192	49
193	36
194	36
195	31
196	33
197	33
198	34
199	36
200	37
201	27
202	23
203	28
204	28
205	28
206	26
207	35
208	24
209	29
210	26
211	22
212	21
213	22
214	20
215	23
216	33
217	32
218	26
219	27
220	23
221	22
222	23
223	22
224	21
225	17
226	16
227	24
228	27
229	21
230	28
231	27
232	22
233	16
234	26
235	23
236	17
237	16
238	26
239	19
240	20
241	15
242	14
243	17
244	16
245	25
246	7
247	10
248	18
249	17
250	11
251	15
252	18
253	21
254	10
255	13
256	18
257	20
258	25
259	14
260	12
261	16
262	10
263	11
264	27
265	18
266	14
267	18
268	14
269	12
270	19
271	8
272	10
273	16
274	13
275	13
276	17
277	13
278	15
279	7
280	13
281	8
282	12
283	10
284	5
285	10
286	9
287	15
288	6
289	8
290	11
291	9
292	12
293	16
294	12
295	7
296	14
297	13
298	10
299	14
300	20
301	18
302	7
303	16
304	9
305	9
306	9
307	9
308	14
309	8
310	10
311	7
312	6
313	8
314	13
315	6
316	10
317	11
318	2
319	9
320	14
321	15
322	10
323	9
324	5
325	6
326	4
327	7
328	6
329	8
330	9
331	7
332	4
333	10
334	11
335	5
336	7
337	8
338	8
339	9
340	3
341	6
342	5
343	7
344	8
345	6
346	8
347	3
348	9
349	14
350	2
351	7
352	4
353	8
354	5
355	5
356	7
357	6
358	4
359	4
360	6
361	5
362	4
363	4
364	10
365	4
366	2
367	6
368	5
369	4
370	5
371	5
372	6
373	6
374	5
375	6
376	7
377	5
378	3
379	4
380	4
381	6
382	4
383	3
384	6
385	1
386	5
387	3
388	3
389	2
390	6
391	3
392	4
393	5
394	4
395	7
396	6
397	3
398	3
399	4
400	6
401	1
402	8
403	6
404	6
405	3
406	8
407	8
408	3
409	2
410	3
411	2
412	4
413	5
414	9
415	4
416	3
417	3
418	6
419	3
420	3
421	5
422	1
423	5
424	4
425	4
426	4
427	5
428	5
429	3
430	2
431	5
432	2
433	1
434	1
435	2
436	1
437	2
438	4
439	4
440	7
441	3
442	2
443	1
444	2
445	2
446	3
447	1
448	1
449	2
450	1
451	7
452	2
453	6
454	2
455	4
456	3
458	2
459	4
460	5
461	3
462	3
463	4
464	2
465	3
467	2
468	4
469	3
470	5
471	1
472	1
473	1
474	4
475	2
476	2
477	3
478	4
479	3
480	1
481	1
483	1
484	1
485	1
486	4
487	1
488	3
489	7
490	2
491	4
492	4
493	1
494	6
495	3
496	4
497	5
498	4
499	4
501	1
502	3
503	1
504	2
505	3
507	3
510	1
512	4
513	1
514	1
515	1
516	1
517	1
518	1
519	2
521	3
522	1
523	1
525	3
526	2
528	4
529	3
530	3
531	3
533	2
534	2
535	1
537	4
538	2
539	1
540	3
542	3
543	3
544	1
546	2
547	1
549	2
550	1
551	1
552	2
554	1
555	4
556	2
557	1
559	1
560	2
561	1
562	2
564	1
565	2
569	2
571	4
572	1
573	2
574	2
576	1
577	2
579	2
580	2
581	1
582	1
583	1
584	1
585	1
586	2
589	3
591	1
593	1
594	2
595	3
596	3
597	2
598	3
600	3
605	2
606	2
609	3
610	1
612	1
613	1
615	1
616	2
618	1
619	2
623	1
625	3
626	1
627	2
628	1
629	1
631	2
632	1
633	1
634	2
635	1
636	2
637	2
638	2
642	1
643	1
645	3
646	1
647	1
648	1
649	2
651	1
652	3
654	2
655	1
656	5
658	1
659	2
660	1
661	1
664	1
665	1
666	2
667	3
670	1
673	2
674	1
677	1
679	1
680	1
681	3
686	1
688	2
689	1
690	2
693	1
695	1
696	1
697	2
698	1
699	2
703	1
705	2
708	1
711	1
712	1
713	1
714	3
716	1
718	1
719	1
721	1
722	2
724	1
727	1
728	2
733	2
734	1
736	1
737	2
738	1
739	2
742	1
743	1
744	2
749	1
750	1
754	2
755	3
756	1
757	2
760	2
769	1
773	2
774	1
781	1
783	1
784	1
790	1
793	1
794	2
795	1
799	1
803	1
805	1
806	1
807	2
808	1
810	1
811	1
813	1
814	2
817	1
823	1
826	1
829	1
831	2
834	1
836	1
838	1
843	1
848	3
849	1
850	1
854	3
858	2
860	1
863	1
867	2
868	1
885	1
890	1
893	1
894	1
898	1
899	2
901	1
903	1
906	1
907	1
911	1
912	1
913	1
915	1
922	1
928	1
932	1
933	1
936	1
937	1
946	2
949	2
956	1
959	1
962	1
964	1
969	1
972	1
973	2
974	2
977	1
981	1
984	1
985	1
987	1
992	1
999	1
1000	1
1014	1
1018	1
1028	1
1031	1
1035	1
1043	1
1046	1
1057	1
1058	1
1088	1
1096	2
1101	1
1123	1
1125	1
1138	1
1142	1
1155	2
1161	1
1164	1
1170	1
1179	1
1188	2
1209	1
1219	1
1226	2
1229	1
1232	1
1233	2
1237	1
1242	1
1254	1
1272	1
1275	1
1287	2
1290	1
1291	1
1300	1
1308	1
1310	1
1312	1
1314	1
1315	1
1317	1
1320	1
1323	1
1325	1
1329	1
1330	1
1334	1
1338	1
1342	1
1346	1
1355	1
1358	1
1369	1
1378	1
1386	1
1393	2
1403	1
1409	1
1419	1
1435	1
1441	1
1447	1
1451	1
1462	1
1470	1
1474	1
1475	1
1484	1
1496	1
1497	1
1506	1
1535	1
1549	1
1560	1
1572	1
1575	1
1586	1
1590	1
1596	1
1599	1
1603	1
1613	1
1620	1
1627	1
1628	1
1637	1
1644	1
1668	1
1670	1
1676	1
1683	1
1707	1
1729	1
1771	1
1789	1
1793	1
1807	1
1817	1
1839	1
1871	1
1908	1
1933	1
1958	1
2019	1
2028	1
2039	1
2087	1
2102	1
2199	1
2204	1
2205	1
2241	1
2244	1
2262	1
2300	1
2328	1
2381	1
2426	1
2434	1
2496	1
2740	1
2810	1
2842	1
2985	1
3262	1
3433	1
3452	1
5443	1
5509	1
5748	1
10102	1
12237	1
49867	1
1043081	1

[ESTIMATING YIELD CURVE]
[BOOTSTRAPPING HISTOGRAM]
.........................._.............................................
.............................
[COMPUTING CONFIDENCE INTERVALS]
[WRITING OUTPUT]