Using GATK jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar
Running:
java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xmx60620M -XX:-UsePerfData -XX:ParallelGCThreads=2 -jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar MarkDuplicates --INPUT 659_buD-T1-TRNA-1_A23MVY2LT4_1.Aligned.sortedByCoord.out.bam --OUTPUT 659_buD-T1-TRNA-1_A23MVY2LT4_1.md.bam --METRICS_FILE 659_buD-T1-TRNA-1_A23MVY2LT4_1.md.bam.metrics --TMP_DIR . --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa -REMOVE_DUPLICATES false -VALIDATION_STRINGENCY LENIENT
08:46:37.176 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar!/com/intel/gkl/native/libgkl_compression.so
[Mon Jun 08 08:46:37 GMT 2026] MarkDuplicates --INPUT 659_buD-T1-TRNA-1_A23MVY2LT4_1.Aligned.sortedByCoord.out.bam --OUTPUT 659_buD-T1-TRNA-1_A23MVY2LT4_1.md.bam --METRICS_FILE 659_buD-T1-TRNA-1_A23MVY2LT4_1.md.bam.metrics --REMOVE_DUPLICATES false --TMP_DIR . --VALIDATION_STRINGENCY LENIENT --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --FLOW_MODE false --FLOW_QUALITY_SUM_STRATEGY false --USE_END_IN_UNPAIRED_READS false --USE_UNPAIRED_CLIPPED_END false --UNPAIRED_END_UNCERTAINTY 0 --FLOW_SKIP_FIRST_N_FLOWS 0 --FLOW_Q_IS_KNOWN_END false --FLOW_EFFECTIVE_QUALITY_THRESHOLD 15 --ADD_PG_TAG_TO_READS true --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX <optimized capture of last three ':' separated fields as numeric values> --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Mon Jun 08 08:46:37 GMT 2026] Executing as ?@nf-01806b9da7be3976fbf576ea153c6c12-fa879-2f9sv on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 17.0.3-internal+0-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:4.4.0.0
INFO 2026-06-08 08:46:37 MarkDuplicates Start of doWork freeMemory: 105828016; totalMemory: 134217728; maxMemory: 63585648640
INFO 2026-06-08 08:46:37 MarkDuplicates Reading input file and constructing read end information.
INFO 2026-06-08 08:46:37 MarkDuplicates Will retain up to 230382784 data points before spilling to disk.
INFO 2026-06-08 08:46:41 MarkDuplicates Read 1,000,000 records. Elapsed time: 00:00:02s. Time for last 1,000,000: 2s. Last read position: chr1:1,554,084
INFO 2026-06-08 08:46:41 MarkDuplicates Tracking 3826 as yet unmatched pairs. 459 records in RAM.
INFO 2026-06-08 08:46:44 MarkDuplicates Read 2,000,000 records. Elapsed time: 00:00:05s. Time for last 1,000,000: 2s. Last read position: chr1:6,785,512
INFO 2026-06-08 08:46:44 MarkDuplicates Tracking 7200 as yet unmatched pairs. 767 records in RAM.
INFO 2026-06-08 08:46:46 MarkDuplicates Read 3,000,000 records. Elapsed time: 00:00:07s. Time for last 1,000,000: 1s. Last read position: chr1:10,463,189
INFO 2026-06-08 08:46:46 MarkDuplicates Tracking 9305 as yet unmatched pairs. 213 records in RAM.
INFO 2026-06-08 08:46:49 MarkDuplicates Read 4,000,000 records. Elapsed time: 00:00:10s. Time for last 1,000,000: 2s. Last read position: chr1:12,293,635
INFO 2026-06-08 08:46:49 MarkDuplicates Tracking 12648 as yet unmatched pairs. 638 records in RAM.
INFO 2026-06-08 08:46:50 MarkDuplicates Read 5,000,000 records. Elapsed time: 00:00:12s. Time for last 1,000,000: 1s. Last read position: chr1:16,587,218
INFO 2026-06-08 08:46:50 MarkDuplicates Tracking 14767 as yet unmatched pairs. 438 records in RAM.
INFO 2026-06-08 08:46:52 MarkDuplicates Read 6,000,000 records. Elapsed time: 00:00:14s. Time for last 1,000,000: 2s. Last read position: chr1:19,219,372
INFO 2026-06-08 08:46:52 MarkDuplicates Tracking 17488 as yet unmatched pairs. 391 records in RAM.
INFO 2026-06-08 08:46:55 MarkDuplicates Read 7,000,000 records. Elapsed time: 00:00:16s. Time for last 1,000,000: 2s. Last read position: chr1:21,836,955
INFO 2026-06-08 08:46:55 MarkDuplicates Tracking 20522 as yet unmatched pairs. 730 records in RAM.
INFO 2026-06-08 08:46:58 MarkDuplicates Read 8,000,000 records. Elapsed time: 00:00:19s. Time for last 1,000,000: 2s. Last read position: chr1:22,639,401
INFO 2026-06-08 08:46:58 MarkDuplicates Tracking 26484 as yet unmatched pairs. 3602 records in RAM.
INFO 2026-06-08 08:47:00 MarkDuplicates Read 9,000,000 records. Elapsed time: 00:00:21s. Time for last 1,000,000: 2s. Last read position: chr1:24,645,984
INFO 2026-06-08 08:47:00 MarkDuplicates Tracking 25958 as yet unmatched pairs. 430 records in RAM.
INFO 2026-06-08 08:47:02 MarkDuplicates Read 10,000,000 records. Elapsed time: 00:00:23s. Time for last 1,000,000: 1s. Last read position: chr1:26,795,044
INFO 2026-06-08 08:47:02 MarkDuplicates Tracking 28255 as yet unmatched pairs. 171 records in RAM.
INFO 2026-06-08 08:47:04 MarkDuplicates Read 11,000,000 records. Elapsed time: 00:00:25s. Time for last 1,000,000: 2s. Last read position: chr1:28,237,836
INFO 2026-06-08 08:47:04 MarkDuplicates Tracking 31536 as yet unmatched pairs. 571 records in RAM.
INFO 2026-06-08 08:47:06 MarkDuplicates Read 12,000,000 records. Elapsed time: 00:00:28s. Time for last 1,000,000: 2s. Last read position: chr1:31,652,825
INFO 2026-06-08 08:47:06 MarkDuplicates Tracking 34325 as yet unmatched pairs. 668 records in RAM.
INFO 2026-06-08 08:47:09 MarkDuplicates Read 13,000,000 records. Elapsed time: 00:00:30s. Time for last 1,000,000: 2s. Last read position: chr1:32,772,076
INFO 2026-06-08 08:47:09 MarkDuplicates Tracking 37003 as yet unmatched pairs. 485 records in RAM.
INFO 2026-06-08 08:47:12 MarkDuplicates Read 14,000,000 records. Elapsed time: 00:00:33s. Time for last 1,000,000: 2s. Last read position: chr1:36,097,884
INFO 2026-06-08 08:47:12 MarkDuplicates Tracking 39483 as yet unmatched pairs. 156 records in RAM.
INFO 2026-06-08 08:47:14 MarkDuplicates Read 15,000,000 records. Elapsed time: 00:00:35s. Time for last 1,000,000: 1s. Last read position: chr1:39,357,573
INFO 2026-06-08 08:47:14 MarkDuplicates Tracking 42775 as yet unmatched pairs. 636 records in RAM.
INFO 2026-06-08 08:47:16 MarkDuplicates Read 16,000,000 records. Elapsed time: 00:00:37s. Time for last 1,000,000: 1s. Last read position: chr1:40,304,329
INFO 2026-06-08 08:47:16 MarkDuplicates Tracking 45244 as yet unmatched pairs. 453 records in RAM.
INFO 2026-06-08 08:47:19 MarkDuplicates Read 17,000,000 records. Elapsed time: 00:00:40s. Time for last 1,000,000: 2s. Last read position: chr1:43,432,737
INFO 2026-06-08 08:47:19 MarkDuplicates Tracking 47683 as yet unmatched pairs. 138 records in RAM.
INFO 2026-06-08 08:47:21 MarkDuplicates Read 18,000,000 records. Elapsed time: 00:00:42s. Time for last 1,000,000: 2s. Last read position: chr1:44,776,065
INFO 2026-06-08 08:47:21 MarkDuplicates Tracking 53752 as yet unmatched pairs. 3274 records in RAM.
INFO 2026-06-08 08:47:23 MarkDuplicates Read 19,000,000 records. Elapsed time: 00:00:44s. Time for last 1,000,000: 2s. Last read position: chr1:46,303,207
INFO 2026-06-08 08:47:23 MarkDuplicates Tracking 53175 as yet unmatched pairs. 62 records in RAM.
INFO 2026-06-08 08:47:25 MarkDuplicates Read 20,000,000 records. Elapsed time: 00:00:46s. Time for last 1,000,000: 2s. Last read position: chr1:52,857,087
INFO 2026-06-08 08:47:25 MarkDuplicates Tracking 56068 as yet unmatched pairs. 233 records in RAM.
INFO 2026-06-08 08:47:27 MarkDuplicates Read 21,000,000 records. Elapsed time: 00:00:48s. Time for last 1,000,000: 1s. Last read position: chr1:58,576,713
INFO 2026-06-08 08:47:27 MarkDuplicates Tracking 61034 as yet unmatched pairs. 2317 records in RAM.
INFO 2026-06-08 08:47:29 MarkDuplicates Read 22,000,000 records. Elapsed time: 00:00:51s. Time for last 1,000,000: 2s. Last read position: chr1:66,946,116
INFO 2026-06-08 08:47:29 MarkDuplicates Tracking 61818 as yet unmatched pairs. 346 records in RAM.
INFO 2026-06-08 08:47:32 MarkDuplicates Read 23,000,000 records. Elapsed time: 00:00:53s. Time for last 1,000,000: 2s. Last read position: chr1:85,580,992
INFO 2026-06-08 08:47:32 MarkDuplicates Tracking 65256 as yet unmatched pairs. 1165 records in RAM.
INFO 2026-06-08 08:47:34 MarkDuplicates Read 24,000,000 records. Elapsed time: 00:00:55s. Time for last 1,000,000: 2s. Last read position: chr1:92,840,630
INFO 2026-06-08 08:47:34 MarkDuplicates Tracking 67731 as yet unmatched pairs. 1023 records in RAM.
INFO 2026-06-08 08:47:36 MarkDuplicates Read 25,000,000 records. Elapsed time: 00:00:57s. Time for last 1,000,000: 1s. Last read position: chr1:100,896,652
INFO 2026-06-08 08:47:36 MarkDuplicates Tracking 69900 as yet unmatched pairs. 709 records in RAM.
INFO 2026-06-08 08:47:37 MarkDuplicates Read 26,000,000 records. Elapsed time: 00:00:59s. Time for last 1,000,000: 1s. Last read position: chr1:108,796,631
INFO 2026-06-08 08:47:37 MarkDuplicates Tracking 71272 as yet unmatched pairs. 608 records in RAM.
INFO 2026-06-08 08:47:39 MarkDuplicates Read 27,000,000 records. Elapsed time: 00:01:00s. Time for last 1,000,000: 1s. Last read position: chr1:110,232,758
INFO 2026-06-08 08:47:39 MarkDuplicates Tracking 73644 as yet unmatched pairs. 290 records in RAM.
INFO 2026-06-08 08:47:41 MarkDuplicates Read 28,000,000 records. Elapsed time: 00:01:02s. Time for last 1,000,000: 2s. Last read position: chr1:112,689,568
INFO 2026-06-08 08:47:41 MarkDuplicates Tracking 76280 as yet unmatched pairs. 459 records in RAM.
INFO 2026-06-08 08:47:44 MarkDuplicates Read 29,000,000 records. Elapsed time: 00:01:05s. Time for last 1,000,000: 2s. Last read position: chr1:114,726,363
INFO 2026-06-08 08:47:44 MarkDuplicates Tracking 79526 as yet unmatched pairs. 1179 records in RAM.
INFO 2026-06-08 08:47:46 MarkDuplicates Read 30,000,000 records. Elapsed time: 00:01:07s. Time for last 1,000,000: 1s. Last read position: chr1:119,915,257
INFO 2026-06-08 08:47:46 MarkDuplicates Tracking 83035 as yet unmatched pairs. 2095 records in RAM.
INFO 2026-06-08 08:47:47 MarkDuplicates Read 31,000,000 records. Elapsed time: 00:01:08s. Time for last 1,000,000: 1s. Last read position: chr1:119,926,555
INFO 2026-06-08 08:47:47 MarkDuplicates Tracking 88785 as yet unmatched pairs. 5330 records in RAM.
INFO 2026-06-08 08:47:49 MarkDuplicates Read 32,000,000 records. Elapsed time: 00:01:10s. Time for last 1,000,000: 1s. Last read position: chr1:119,987,017
INFO 2026-06-08 08:47:49 MarkDuplicates Tracking 91303 as yet unmatched pairs. 4920 records in RAM.
INFO 2026-06-08 08:47:50 MarkDuplicates Read 33,000,000 records. Elapsed time: 00:01:12s. Time for last 1,000,000: 1s. Last read position: chr1:121,324,578
INFO 2026-06-08 08:47:50 MarkDuplicates Tracking 88162 as yet unmatched pairs. 272 records in RAM.
INFO 2026-06-08 08:47:52 MarkDuplicates Read 34,000,000 records. Elapsed time: 00:01:13s. Time for last 1,000,000: 1s. Last read position: chr1:145,994,694
INFO 2026-06-08 08:47:52 MarkDuplicates Tracking 91545 as yet unmatched pairs. 2022 records in RAM.
INFO 2026-06-08 08:47:53 MarkDuplicates Read 35,000,000 records. Elapsed time: 00:01:14s. Time for last 1,000,000: 1s. Last read position: chr1:146,164,865
INFO 2026-06-08 08:47:53 MarkDuplicates Tracking 92173 as yet unmatched pairs. 1613 records in RAM.
INFO 2026-06-08 08:47:55 MarkDuplicates Read 36,000,000 records. Elapsed time: 00:01:16s. Time for last 1,000,000: 1s. Last read position: chr1:148,540,950
INFO 2026-06-08 08:47:55 MarkDuplicates Tracking 93526 as yet unmatched pairs. 1653 records in RAM.
INFO 2026-06-08 08:47:57 MarkDuplicates Read 37,000,000 records. Elapsed time: 00:01:18s. Time for last 1,000,000: 1s. Last read position: chr1:148,607,058
INFO 2026-06-08 08:47:57 MarkDuplicates Tracking 94354 as yet unmatched pairs. 1983 records in RAM.
INFO 2026-06-08 08:47:59 MarkDuplicates Read 38,000,000 records. Elapsed time: 00:01:20s. Time for last 1,000,000: 2s. Last read position: chr1:149,475,938
INFO 2026-06-08 08:47:59 MarkDuplicates Tracking 95005 as yet unmatched pairs. 1452 records in RAM.
INFO 2026-06-08 08:48:00 MarkDuplicates Read 39,000,000 records. Elapsed time: 00:01:21s. Time for last 1,000,000: 1s. Last read position: chr1:149,886,493
INFO 2026-06-08 08:48:00 MarkDuplicates Tracking 96347 as yet unmatched pairs. 1324 records in RAM.
INFO 2026-06-08 08:48:03 MarkDuplicates Read 40,000,000 records. Elapsed time: 00:01:24s. Time for last 1,000,000: 2s. Last read position: chr1:150,556,198
INFO 2026-06-08 08:48:03 MarkDuplicates Tracking 97859 as yet unmatched pairs. 254 records in RAM.
INFO 2026-06-08 08:48:04 MarkDuplicates Read 41,000,000 records. Elapsed time: 00:01:26s. Time for last 1,000,000: 1s. Last read position: chr1:150,966,536
INFO 2026-06-08 08:48:04 MarkDuplicates Tracking 101037 as yet unmatched pairs. 690 records in RAM.
INFO 2026-06-08 08:48:06 MarkDuplicates Read 42,000,000 records. Elapsed time: 00:01:27s. Time for last 1,000,000: 1s. Last read position: chr1:151,369,003
INFO 2026-06-08 08:48:06 MarkDuplicates Tracking 104428 as yet unmatched pairs. 1446 records in RAM.
INFO 2026-06-08 08:48:08 MarkDuplicates Read 43,000,000 records. Elapsed time: 00:01:29s. Time for last 1,000,000: 1s. Last read position: chr1:152,213,774
INFO 2026-06-08 08:48:08 MarkDuplicates Tracking 106131 as yet unmatched pairs. 442 records in RAM.
INFO 2026-06-08 08:48:09 MarkDuplicates Read 44,000,000 records. Elapsed time: 00:01:30s. Time for last 1,000,000: 1s. Last read position: chr1:153,662,488
INFO 2026-06-08 08:48:09 MarkDuplicates Tracking 109015 as yet unmatched pairs. 901 records in RAM.
INFO 2026-06-08 08:48:11 MarkDuplicates Read 45,000,000 records. Elapsed time: 00:01:33s. Time for last 1,000,000: 2s. Last read position: chr1:154,157,651
INFO 2026-06-08 08:48:11 MarkDuplicates Tracking 123450 as yet unmatched pairs. 12617 records in RAM.
INFO 2026-06-08 08:48:13 MarkDuplicates Read 46,000,000 records. Elapsed time: 00:01:34s. Time for last 1,000,000: 1s. Last read position: chr1:154,251,130
INFO 2026-06-08 08:48:13 MarkDuplicates Tracking 114717 as yet unmatched pairs. 1457 records in RAM.
INFO 2026-06-08 08:48:15 MarkDuplicates Read 47,000,000 records. Elapsed time: 00:01:37s. Time for last 1,000,000: 2s. Last read position: chr1:154,951,222
INFO 2026-06-08 08:48:15 MarkDuplicates Tracking 116949 as yet unmatched pairs. 1052 records in RAM.
INFO 2026-06-08 08:48:18 MarkDuplicates Read 48,000,000 records. Elapsed time: 00:01:39s. Time for last 1,000,000: 2s. Last read position: chr1:155,131,546
INFO 2026-06-08 08:48:18 MarkDuplicates Tracking 119701 as yet unmatched pairs. 839 records in RAM.
INFO 2026-06-08 08:48:20 MarkDuplicates Read 49,000,000 records. Elapsed time: 00:01:41s. Time for last 1,000,000: 2s. Last read position: chr1:155,347,754
INFO 2026-06-08 08:48:20 MarkDuplicates Tracking 121712 as yet unmatched pairs. 130 records in RAM.
INFO 2026-06-08 08:48:22 MarkDuplicates Read 50,000,000 records. Elapsed time: 00:01:43s. Time for last 1,000,000: 1s. Last read position: chr1:155,766,357
INFO 2026-06-08 08:48:22 MarkDuplicates Tracking 124670 as yet unmatched pairs. 921 records in RAM.
INFO 2026-06-08 08:48:24 MarkDuplicates Read 51,000,000 records. Elapsed time: 00:01:45s. Time for last 1,000,000: 1s. Last read position: chr1:156,130,637
INFO 2026-06-08 08:48:24 MarkDuplicates Tracking 137627 as yet unmatched pairs. 10877 records in RAM.
INFO 2026-06-08 08:48:25 MarkDuplicates Read 52,000,000 records. Elapsed time: 00:01:46s. Time for last 1,000,000: 1s. Last read position: chr1:156,137,672
INFO 2026-06-08 08:48:25 MarkDuplicates Tracking 139462 as yet unmatched pairs. 9212 records in RAM.
INFO 2026-06-08 08:48:27 MarkDuplicates Read 53,000,000 records. Elapsed time: 00:01:48s. Time for last 1,000,000: 1s. Last read position: chr1:156,479,717
INFO 2026-06-08 08:48:27 MarkDuplicates Tracking 134027 as yet unmatched pairs. 757 records in RAM.
INFO 2026-06-08 08:48:29 MarkDuplicates Read 54,000,000 records. Elapsed time: 00:01:50s. Time for last 1,000,000: 1s. Last read position: chr1:157,125,225
INFO 2026-06-08 08:48:29 MarkDuplicates Tracking 136224 as yet unmatched pairs. 303 records in RAM.
INFO 2026-06-08 08:48:31 MarkDuplicates Read 55,000,000 records. Elapsed time: 00:01:53s. Time for last 1,000,000: 2s. Last read position: chr1:160,292,582
INFO 2026-06-08 08:48:31 MarkDuplicates Tracking 142119 as yet unmatched pairs. 3407 records in RAM.
INFO 2026-06-08 08:48:33 MarkDuplicates Read 56,000,000 records. Elapsed time: 00:01:54s. Time for last 1,000,000: 1s. Last read position: chr1:161,038,521
INFO 2026-06-08 08:48:33 MarkDuplicates Tracking 142405 as yet unmatched pairs. 1131 records in RAM.
INFO 2026-06-08 08:48:35 MarkDuplicates Read 57,000,000 records. Elapsed time: 00:01:56s. Time for last 1,000,000: 1s. Last read position: chr1:161,542,735
INFO 2026-06-08 08:48:35 MarkDuplicates Tracking 147481 as yet unmatched pairs. 3376 records in RAM.
INFO 2026-06-08 08:48:37 MarkDuplicates Read 58,000,000 records. Elapsed time: 00:01:58s. Time for last 1,000,000: 1s. Last read position: chr1:165,662,994
INFO 2026-06-08 08:48:37 MarkDuplicates Tracking 147745 as yet unmatched pairs. 1246 records in RAM.
INFO 2026-06-08 08:48:39 MarkDuplicates Read 59,000,000 records. Elapsed time: 00:02:00s. Time for last 1,000,000: 1s. Last read position: chr1:169,127,398
INFO 2026-06-08 08:48:39 MarkDuplicates Tracking 152955 as yet unmatched pairs. 3901 records in RAM.
INFO 2026-06-08 08:48:40 MarkDuplicates Read 60,000,000 records. Elapsed time: 00:02:02s. Time for last 1,000,000: 1s. Last read position: chr1:172,585,056
INFO 2026-06-08 08:48:40 MarkDuplicates Tracking 152090 as yet unmatched pairs. 585 records in RAM.
INFO 2026-06-08 08:48:43 MarkDuplicates Read 61,000,000 records. Elapsed time: 00:02:04s. Time for last 1,000,000: 2s. Last read position: chr1:180,014,417
INFO 2026-06-08 08:48:43 MarkDuplicates Tracking 154690 as yet unmatched pairs. 667 records in RAM.
INFO 2026-06-08 08:48:45 MarkDuplicates Read 62,000,000 records. Elapsed time: 00:02:06s. Time for last 1,000,000: 1s. Last read position: chr1:183,108,387
INFO 2026-06-08 08:48:45 MarkDuplicates Tracking 157666 as yet unmatched pairs. 869 records in RAM.
INFO 2026-06-08 08:48:47 MarkDuplicates Read 63,000,000 records. Elapsed time: 00:02:08s. Time for last 1,000,000: 1s. Last read position: chr1:186,331,497
INFO 2026-06-08 08:48:47 MarkDuplicates Tracking 161146 as yet unmatched pairs. 1854 records in RAM.
INFO 2026-06-08 08:48:49 MarkDuplicates Read 64,000,000 records. Elapsed time: 00:02:10s. Time for last 1,000,000: 2s. Last read position: chr1:196,685,143
INFO 2026-06-08 08:48:49 MarkDuplicates Tracking 162001 as yet unmatched pairs. 222 records in RAM.
INFO 2026-06-08 08:48:51 MarkDuplicates Read 65,000,000 records. Elapsed time: 00:02:12s. Time for last 1,000,000: 2s. Last read position: chr1:201,874,291
INFO 2026-06-08 08:48:51 MarkDuplicates Tracking 164606 as yet unmatched pairs. 255 records in RAM.
INFO 2026-06-08 08:48:53 MarkDuplicates Read 66,000,000 records. Elapsed time: 00:02:14s. Time for last 1,000,000: 2s. Last read position: chr1:203,185,352
INFO 2026-06-08 08:48:53 MarkDuplicates Tracking 170458 as yet unmatched pairs. 3407 records in RAM.
INFO 2026-06-08 08:48:56 MarkDuplicates Read 67,000,000 records. Elapsed time: 00:02:17s. Time for last 1,000,000: 2s. Last read position: chr1:204,409,684
INFO 2026-06-08 08:48:56 MarkDuplicates Tracking 169699 as yet unmatched pairs. 160 records in RAM.
INFO 2026-06-08 08:48:57 MarkDuplicates Read 68,000,000 records. Elapsed time: 00:02:19s. Time for last 1,000,000: 1s. Last read position: chr1:206,557,626
INFO 2026-06-08 08:48:57 MarkDuplicates Tracking 172444 as yet unmatched pairs. 383 records in RAM.
INFO 2026-06-08 08:48:59 MarkDuplicates Read 69,000,000 records. Elapsed time: 00:02:20s. Time for last 1,000,000: 1s. Last read position: chr1:209,999,702
INFO 2026-06-08 08:48:59 MarkDuplicates Tracking 174573 as yet unmatched pairs. 20 records in RAM.
INFO 2026-06-08 08:49:01 MarkDuplicates Read 70,000,000 records. Elapsed time: 00:02:22s. Time for last 1,000,000: 1s. Last read position: chr1:220,100,608
INFO 2026-06-08 08:49:01 MarkDuplicates Tracking 177521 as yet unmatched pairs. 417 records in RAM.
INFO 2026-06-08 08:49:03 MarkDuplicates Read 71,000,000 records. Elapsed time: 00:02:24s. Time for last 1,000,000: 1s. Last read position: chr1:225,921,905
INFO 2026-06-08 08:49:03 MarkDuplicates Tracking 179892 as yet unmatched pairs. 202 records in RAM.
INFO 2026-06-08 08:49:04 MarkDuplicates Read 72,000,000 records. Elapsed time: 00:02:26s. Time for last 1,000,000: 1s. Last read position: chr1:229,540,712
INFO 2026-06-08 08:49:04 MarkDuplicates Tracking 182711 as yet unmatched pairs. 93 records in RAM.
INFO 2026-06-08 08:49:06 MarkDuplicates Read 73,000,000 records. Elapsed time: 00:02:27s. Time for last 1,000,000: 1s. Last read position: chr1:235,806,076
INFO 2026-06-08 08:49:06 MarkDuplicates Tracking 186250 as yet unmatched pairs. 666 records in RAM.
INFO 2026-06-08 08:49:08 MarkDuplicates Read 74,000,000 records. Elapsed time: 00:02:29s. Time for last 1,000,000: 1s. Last read position: chr1:245,602,662
INFO 2026-06-08 08:49:08 MarkDuplicates Tracking 188306 as yet unmatched pairs. 159 records in RAM.
INFO 2026-06-08 08:49:11 MarkDuplicates Read 75,000,000 records. Elapsed time: 00:02:33s. Time for last 1,000,000: 3s. Last read position: chr2:8,731,918
INFO 2026-06-08 08:49:11 MarkDuplicates Tracking 191792 as yet unmatched pairs. 190193 records in RAM.
INFO 2026-06-08 08:49:13 MarkDuplicates Read 76,000,000 records. Elapsed time: 00:02:34s. Time for last 1,000,000: 1s. Last read position: chr2:11,765,563
INFO 2026-06-08 08:49:13 MarkDuplicates Tracking 194644 as yet unmatched pairs. 193014 records in RAM.
INFO 2026-06-08 08:49:15 MarkDuplicates Read 77,000,000 records. Elapsed time: 00:02:36s. Time for last 1,000,000: 1s. Last read position: chr2:20,204,024
INFO 2026-06-08 08:49:15 MarkDuplicates Tracking 200005 as yet unmatched pairs. 198351 records in RAM.
INFO 2026-06-08 08:49:17 MarkDuplicates Read 78,000,000 records. Elapsed time: 00:02:38s. Time for last 1,000,000: 1s. Last read position: chr2:24,918,798
INFO 2026-06-08 08:49:17 MarkDuplicates Tracking 199364 as yet unmatched pairs. 197680 records in RAM.
INFO 2026-06-08 08:49:19 MarkDuplicates Read 79,000,000 records. Elapsed time: 00:02:40s. Time for last 1,000,000: 1s. Last read position: chr2:27,212,375
INFO 2026-06-08 08:49:19 MarkDuplicates Tracking 202296 as yet unmatched pairs. 200600 records in RAM.
INFO 2026-06-08 08:49:20 MarkDuplicates Read 80,000,000 records. Elapsed time: 00:02:41s. Time for last 1,000,000: 1s. Last read position: chr2:28,776,853
INFO 2026-06-08 08:49:20 MarkDuplicates Tracking 214593 as yet unmatched pairs. 212873 records in RAM.
INFO 2026-06-08 08:49:22 MarkDuplicates Read 81,000,000 records. Elapsed time: 00:02:43s. Time for last 1,000,000: 1s. Last read position: chr2:31,403,129
INFO 2026-06-08 08:49:22 MarkDuplicates Tracking 207576 as yet unmatched pairs. 205823 records in RAM.
INFO 2026-06-08 08:49:25 MarkDuplicates Read 82,000,000 records. Elapsed time: 00:02:46s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,258
INFO 2026-06-08 08:49:25 MarkDuplicates Tracking 277864 as yet unmatched pairs. 200400 records in RAM.
INFO 2026-06-08 08:49:27 MarkDuplicates Read 83,000,000 records. Elapsed time: 00:02:48s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,264
INFO 2026-06-08 08:49:27 MarkDuplicates Tracking 679257 as yet unmatched pairs. 165411 records in RAM.
INFO 2026-06-08 08:49:29 MarkDuplicates Read 84,000,000 records. Elapsed time: 00:02:50s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,351
INFO 2026-06-08 08:49:29 MarkDuplicates Tracking 1268360 as yet unmatched pairs. 114102 records in RAM.
INFO 2026-06-08 08:49:31 MarkDuplicates Read 85,000,000 records. Elapsed time: 00:02:52s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,406
INFO 2026-06-08 08:49:31 MarkDuplicates Tracking 1358787 as yet unmatched pairs. 105958 records in RAM.
INFO 2026-06-08 08:49:32 MarkDuplicates Read 86,000,000 records. Elapsed time: 00:02:53s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,444
INFO 2026-06-08 08:49:32 MarkDuplicates Tracking 1430640 as yet unmatched pairs. 99942 records in RAM.
INFO 2026-06-08 08:49:34 MarkDuplicates Read 87,000,000 records. Elapsed time: 00:02:55s. Time for last 1,000,000: 1s. Last read position: chr2:38,564,223
INFO 2026-06-08 08:49:34 MarkDuplicates Tracking 1433056 as yet unmatched pairs. 97314 records in RAM.
INFO 2026-06-08 08:49:36 MarkDuplicates Read 88,000,000 records. Elapsed time: 00:02:57s. Time for last 1,000,000: 1s. Last read position: chr2:43,505,643
INFO 2026-06-08 08:49:36 MarkDuplicates Tracking 1431193 as yet unmatched pairs. 95428 records in RAM.
INFO 2026-06-08 08:49:37 MarkDuplicates Read 89,000,000 records. Elapsed time: 00:02:58s. Time for last 1,000,000: 1s. Last read position: chr2:47,373,492
INFO 2026-06-08 08:49:37 MarkDuplicates Tracking 1428036 as yet unmatched pairs. 92248 records in RAM.
INFO 2026-06-08 08:49:39 MarkDuplicates Read 90,000,000 records. Elapsed time: 00:03:00s. Time for last 1,000,000: 1s. Last read position: chr2:54,655,987
INFO 2026-06-08 08:49:39 MarkDuplicates Tracking 1425074 as yet unmatched pairs. 89230 records in RAM.
INFO 2026-06-08 08:49:41 MarkDuplicates Read 91,000,000 records. Elapsed time: 00:03:02s. Time for last 1,000,000: 1s. Last read position: chr2:61,214,371
INFO 2026-06-08 08:49:41 MarkDuplicates Tracking 1422929 as yet unmatched pairs. 87059 records in RAM.
INFO 2026-06-08 08:49:42 MarkDuplicates Read 92,000,000 records. Elapsed time: 00:03:03s. Time for last 1,000,000: 1s. Last read position: chr2:65,227,874
INFO 2026-06-08 08:49:42 MarkDuplicates Tracking 1420032 as yet unmatched pairs. 84146 records in RAM.
INFO 2026-06-08 08:49:44 MarkDuplicates Read 93,000,000 records. Elapsed time: 00:03:05s. Time for last 1,000,000: 1s. Last read position: chr2:71,349,589
INFO 2026-06-08 08:49:44 MarkDuplicates Tracking 1418478 as yet unmatched pairs. 82561 records in RAM.
INFO 2026-06-08 08:49:45 MarkDuplicates Read 94,000,000 records. Elapsed time: 00:03:07s. Time for last 1,000,000: 1s. Last read position: chr2:74,461,288
INFO 2026-06-08 08:49:45 MarkDuplicates Tracking 1415149 as yet unmatched pairs. 79220 records in RAM.
INFO 2026-06-08 08:49:47 MarkDuplicates Read 95,000,000 records. Elapsed time: 00:03:08s. Time for last 1,000,000: 1s. Last read position: chr2:85,560,802
INFO 2026-06-08 08:49:47 MarkDuplicates Tracking 1412284 as yet unmatched pairs. 76335 records in RAM.
INFO 2026-06-08 08:49:49 MarkDuplicates Read 96,000,000 records. Elapsed time: 00:03:10s. Time for last 1,000,000: 1s. Last read position: chr2:95,212,261
INFO 2026-06-08 08:49:49 MarkDuplicates Tracking 1409777 as yet unmatched pairs. 73801 records in RAM.
INFO 2026-06-08 08:49:50 MarkDuplicates Read 97,000,000 records. Elapsed time: 00:03:11s. Time for last 1,000,000: 1s. Last read position: chr2:97,083,709
INFO 2026-06-08 08:49:50 MarkDuplicates Tracking 1407672 as yet unmatched pairs. 71676 records in RAM.
INFO 2026-06-08 08:49:52 MarkDuplicates Read 98,000,000 records. Elapsed time: 00:03:13s. Time for last 1,000,000: 1s. Last read position: chr2:101,005,970
INFO 2026-06-08 08:49:52 MarkDuplicates Tracking 1413346 as yet unmatched pairs. 77331 records in RAM.
INFO 2026-06-08 08:49:54 MarkDuplicates Read 99,000,000 records. Elapsed time: 00:03:15s. Time for last 1,000,000: 2s. Last read position: chr2:108,751,407
INFO 2026-06-08 08:49:54 MarkDuplicates Tracking 1404013 as yet unmatched pairs. 67978 records in RAM.
INFO 2026-06-08 08:49:55 MarkDuplicates Read 100,000,000 records. Elapsed time: 00:03:16s. Time for last 1,000,000: 1s. Last read position: chr2:109,836,624
INFO 2026-06-08 08:49:55 MarkDuplicates Tracking 1401822 as yet unmatched pairs. 65775 records in RAM.
INFO 2026-06-08 08:49:57 MarkDuplicates Read 101,000,000 records. Elapsed time: 00:03:18s. Time for last 1,000,000: 1s. Last read position: chr2:112,391,003
INFO 2026-06-08 08:49:57 MarkDuplicates Tracking 1399921 as yet unmatched pairs. 63864 records in RAM.
INFO 2026-06-08 08:49:58 MarkDuplicates Read 102,000,000 records. Elapsed time: 00:03:19s. Time for last 1,000,000: 1s. Last read position: chr2:120,013,128
INFO 2026-06-08 08:49:58 MarkDuplicates Tracking 1397829 as yet unmatched pairs. 61749 records in RAM.
INFO 2026-06-08 08:50:01 MarkDuplicates Read 103,000,000 records. Elapsed time: 00:03:22s. Time for last 1,000,000: 2s. Last read position: chr2:131,724,028
INFO 2026-06-08 08:50:01 MarkDuplicates Tracking 1395088 as yet unmatched pairs. 58970 records in RAM.
INFO 2026-06-08 08:50:02 MarkDuplicates Read 104,000,000 records. Elapsed time: 00:03:24s. Time for last 1,000,000: 1s. Last read position: chr2:149,576,446
INFO 2026-06-08 08:50:02 MarkDuplicates Tracking 1393406 as yet unmatched pairs. 57251 records in RAM.
INFO 2026-06-08 08:50:05 MarkDuplicates Read 105,000,000 records. Elapsed time: 00:03:26s. Time for last 1,000,000: 2s. Last read position: chr2:159,853,275
INFO 2026-06-08 08:50:05 MarkDuplicates Tracking 1390582 as yet unmatched pairs. 54410 records in RAM.
INFO 2026-06-08 08:50:07 MarkDuplicates Read 106,000,000 records. Elapsed time: 00:03:28s. Time for last 1,000,000: 2s. Last read position: chr2:171,061,049
INFO 2026-06-08 08:50:07 MarkDuplicates Tracking 1387852 as yet unmatched pairs. 51659 records in RAM.
INFO 2026-06-08 08:50:08 MarkDuplicates Read 107,000,000 records. Elapsed time: 00:03:29s. Time for last 1,000,000: 1s. Last read position: chr2:177,216,510
INFO 2026-06-08 08:50:08 MarkDuplicates Tracking 1385560 as yet unmatched pairs. 49345 records in RAM.
INFO 2026-06-08 08:50:10 MarkDuplicates Read 108,000,000 records. Elapsed time: 00:03:31s. Time for last 1,000,000: 1s. Last read position: chr2:182,834,836
INFO 2026-06-08 08:50:10 MarkDuplicates Tracking 1384397 as yet unmatched pairs. 48167 records in RAM.
INFO 2026-06-08 08:50:12 MarkDuplicates Read 109,000,000 records. Elapsed time: 00:03:33s. Time for last 1,000,000: 1s. Last read position: chr2:188,988,118
INFO 2026-06-08 08:50:12 MarkDuplicates Tracking 1386534 as yet unmatched pairs. 50264 records in RAM.
INFO 2026-06-08 08:50:13 MarkDuplicates Read 110,000,000 records. Elapsed time: 00:03:34s. Time for last 1,000,000: 1s. Last read position: chr2:189,007,570
INFO 2026-06-08 08:50:13 MarkDuplicates Tracking 1382284 as yet unmatched pairs. 46002 records in RAM.
INFO 2026-06-08 08:50:15 MarkDuplicates Read 111,000,000 records. Elapsed time: 00:03:36s. Time for last 1,000,000: 1s. Last read position: chr2:190,437,135
INFO 2026-06-08 08:50:15 MarkDuplicates Tracking 1374584 as yet unmatched pairs. 38292 records in RAM.
INFO 2026-06-08 08:50:17 MarkDuplicates Read 112,000,000 records. Elapsed time: 00:03:38s. Time for last 1,000,000: 1s. Last read position: chr2:197,487,063
INFO 2026-06-08 08:50:17 MarkDuplicates Tracking 1371985 as yet unmatched pairs. 35677 records in RAM.
INFO 2026-06-08 08:50:18 MarkDuplicates Read 113,000,000 records. Elapsed time: 00:03:39s. Time for last 1,000,000: 1s. Last read position: chr2:203,135,958
INFO 2026-06-08 08:50:18 MarkDuplicates Tracking 1369314 as yet unmatched pairs. 32986 records in RAM.
INFO 2026-06-08 08:50:20 MarkDuplicates Read 114,000,000 records. Elapsed time: 00:03:41s. Time for last 1,000,000: 1s. Last read position: chr2:211,386,939
INFO 2026-06-08 08:50:20 MarkDuplicates Tracking 1366638 as yet unmatched pairs. 30280 records in RAM.
INFO 2026-06-08 08:50:21 MarkDuplicates Read 115,000,000 records. Elapsed time: 00:03:43s. Time for last 1,000,000: 1s. Last read position: chr2:215,372,152
INFO 2026-06-08 08:50:21 MarkDuplicates Tracking 1378021 as yet unmatched pairs. 41633 records in RAM.
INFO 2026-06-08 08:50:23 MarkDuplicates Read 116,000,000 records. Elapsed time: 00:03:44s. Time for last 1,000,000: 1s. Last read position: chr2:215,382,213
INFO 2026-06-08 08:50:23 MarkDuplicates Tracking 1372187 as yet unmatched pairs. 35792 records in RAM.
INFO 2026-06-08 08:50:25 MarkDuplicates Read 117,000,000 records. Elapsed time: 00:03:46s. Time for last 1,000,000: 1s. Last read position: chr2:215,399,325
INFO 2026-06-08 08:50:25 MarkDuplicates Tracking 1363462 as yet unmatched pairs. 27056 records in RAM.
INFO 2026-06-08 08:50:26 MarkDuplicates Read 118,000,000 records. Elapsed time: 00:03:48s. Time for last 1,000,000: 1s. Last read position: chr2:215,420,720
INFO 2026-06-08 08:50:26 MarkDuplicates Tracking 1361081 as yet unmatched pairs. 24662 records in RAM.
INFO 2026-06-08 08:50:29 MarkDuplicates Read 119,000,000 records. Elapsed time: 00:03:50s. Time for last 1,000,000: 2s. Last read position: chr2:216,190,225
INFO 2026-06-08 08:50:29 MarkDuplicates Tracking 1355701 as yet unmatched pairs. 19272 records in RAM.
INFO 2026-06-08 08:50:32 MarkDuplicates Read 120,000,000 records. Elapsed time: 00:03:53s. Time for last 1,000,000: 3s. Last read position: chr2:218,642,059
INFO 2026-06-08 08:50:32 MarkDuplicates Tracking 1351699 as yet unmatched pairs. 15254 records in RAM.
INFO 2026-06-08 08:50:34 MarkDuplicates Read 121,000,000 records. Elapsed time: 00:03:55s. Time for last 1,000,000: 1s. Last read position: chr2:219,541,928
INFO 2026-06-08 08:50:34 MarkDuplicates Tracking 1350124 as yet unmatched pairs. 13642 records in RAM.
INFO 2026-06-08 08:50:35 MarkDuplicates Read 122,000,000 records. Elapsed time: 00:03:56s. Time for last 1,000,000: 1s. Last read position: chr2:229,859,524
INFO 2026-06-08 08:50:35 MarkDuplicates Tracking 1346188 as yet unmatched pairs. 9677 records in RAM.
INFO 2026-06-08 08:50:37 MarkDuplicates Read 123,000,000 records. Elapsed time: 00:03:58s. Time for last 1,000,000: 1s. Last read position: chr2:233,533,638
INFO 2026-06-08 08:50:37 MarkDuplicates Tracking 1343403 as yet unmatched pairs. 6859 records in RAM.
INFO 2026-06-08 08:50:38 MarkDuplicates Read 124,000,000 records. Elapsed time: 00:04:00s. Time for last 1,000,000: 1s. Last read position: chr2:237,374,707
INFO 2026-06-08 08:50:38 MarkDuplicates Tracking 1341527 as yet unmatched pairs. 4969 records in RAM.
INFO 2026-06-08 08:50:40 MarkDuplicates Read 125,000,000 records. Elapsed time: 00:04:02s. Time for last 1,000,000: 1s. Last read position: chr2:241,253,393
INFO 2026-06-08 08:50:40 MarkDuplicates Tracking 1337871 as yet unmatched pairs. 1296 records in RAM.
INFO 2026-06-08 08:50:43 MarkDuplicates Read 126,000,000 records. Elapsed time: 00:04:04s. Time for last 1,000,000: 2s. Last read position: chr3:9,475,854
INFO 2026-06-08 08:50:43 MarkDuplicates Tracking 1335436 as yet unmatched pairs. 81706 records in RAM.
INFO 2026-06-08 08:50:45 MarkDuplicates Read 127,000,000 records. Elapsed time: 00:04:06s. Time for last 1,000,000: 2s. Last read position: chr3:11,564,815
INFO 2026-06-08 08:50:45 MarkDuplicates Tracking 1332943 as yet unmatched pairs. 79192 records in RAM.
INFO 2026-06-08 08:50:47 MarkDuplicates Read 128,000,000 records. Elapsed time: 00:04:08s. Time for last 1,000,000: 1s. Last read position: chr3:13,629,037
INFO 2026-06-08 08:50:47 MarkDuplicates Tracking 1329963 as yet unmatched pairs. 76189 records in RAM.
INFO 2026-06-08 08:50:48 MarkDuplicates Read 129,000,000 records. Elapsed time: 00:04:10s. Time for last 1,000,000: 1s. Last read position: chr3:24,165,052
INFO 2026-06-08 08:50:48 MarkDuplicates Tracking 1326909 as yet unmatched pairs. 73090 records in RAM.
INFO 2026-06-08 08:50:50 MarkDuplicates Read 130,000,000 records. Elapsed time: 00:04:11s. Time for last 1,000,000: 1s. Last read position: chr3:33,425,619
INFO 2026-06-08 08:50:50 MarkDuplicates Tracking 1324909 as yet unmatched pairs. 71066 records in RAM.
INFO 2026-06-08 08:50:52 MarkDuplicates Read 131,000,000 records. Elapsed time: 00:04:13s. Time for last 1,000,000: 1s. Last read position: chr3:39,084,238
INFO 2026-06-08 08:50:52 MarkDuplicates Tracking 1321945 as yet unmatched pairs. 68081 records in RAM.
INFO 2026-06-08 08:50:54 MarkDuplicates Read 132,000,000 records. Elapsed time: 00:04:15s. Time for last 1,000,000: 1s. Last read position: chr3:41,238,048
INFO 2026-06-08 08:50:54 MarkDuplicates Tracking 1319958 as yet unmatched pairs. 66072 records in RAM.
INFO 2026-06-08 08:50:56 MarkDuplicates Read 133,000,000 records. Elapsed time: 00:04:17s. Time for last 1,000,000: 1s. Last read position: chr3:45,947,800
INFO 2026-06-08 08:50:56 MarkDuplicates Tracking 1316685 as yet unmatched pairs. 62766 records in RAM.
INFO 2026-06-08 08:50:58 MarkDuplicates Read 134,000,000 records. Elapsed time: 00:04:19s. Time for last 1,000,000: 1s. Last read position: chr3:47,916,126
INFO 2026-06-08 08:50:58 MarkDuplicates Tracking 1314886 as yet unmatched pairs. 60948 records in RAM.
INFO 2026-06-08 08:51:00 MarkDuplicates Read 135,000,000 records. Elapsed time: 00:04:21s. Time for last 1,000,000: 1s. Last read position: chr3:49,119,035
INFO 2026-06-08 08:51:00 MarkDuplicates Tracking 1310799 as yet unmatched pairs. 56847 records in RAM.
INFO 2026-06-08 08:51:02 MarkDuplicates Read 136,000,000 records. Elapsed time: 00:04:23s. Time for last 1,000,000: 2s. Last read position: chr3:49,968,254
INFO 2026-06-08 08:51:02 MarkDuplicates Tracking 1308238 as yet unmatched pairs. 54277 records in RAM.
INFO 2026-06-08 08:51:03 MarkDuplicates Read 137,000,000 records. Elapsed time: 00:04:24s. Time for last 1,000,000: 1s. Last read position: chr3:52,358,581
INFO 2026-06-08 08:51:03 MarkDuplicates Tracking 1304969 as yet unmatched pairs. 50992 records in RAM.
INFO 2026-06-08 08:51:05 MarkDuplicates Read 138,000,000 records. Elapsed time: 00:04:26s. Time for last 1,000,000: 1s. Last read position: chr3:54,642,229
INFO 2026-06-08 08:51:05 MarkDuplicates Tracking 1302215 as yet unmatched pairs. 48215 records in RAM.
INFO 2026-06-08 08:51:07 MarkDuplicates Read 139,000,000 records. Elapsed time: 00:04:28s. Time for last 1,000,000: 1s. Last read position: chr3:65,391,143
INFO 2026-06-08 08:51:07 MarkDuplicates Tracking 1299736 as yet unmatched pairs. 45702 records in RAM.
INFO 2026-06-08 08:51:08 MarkDuplicates Read 140,000,000 records. Elapsed time: 00:04:30s. Time for last 1,000,000: 1s. Last read position: chr3:98,521,272
INFO 2026-06-08 08:51:08 MarkDuplicates Tracking 1297819 as yet unmatched pairs. 43732 records in RAM.
INFO 2026-06-08 08:51:10 MarkDuplicates Read 141,000,000 records. Elapsed time: 00:04:31s. Time for last 1,000,000: 1s. Last read position: chr3:105,367,466
INFO 2026-06-08 08:51:10 MarkDuplicates Tracking 1295622 as yet unmatched pairs. 41523 records in RAM.
INFO 2026-06-08 08:51:12 MarkDuplicates Read 142,000,000 records. Elapsed time: 00:04:33s. Time for last 1,000,000: 1s. Last read position: chr3:113,623,591
INFO 2026-06-08 08:51:12 MarkDuplicates Tracking 1292450 as yet unmatched pairs. 38330 records in RAM.
INFO 2026-06-08 08:51:14 MarkDuplicates Read 143,000,000 records. Elapsed time: 00:04:35s. Time for last 1,000,000: 2s. Last read position: chr3:121,714,860
INFO 2026-06-08 08:51:14 MarkDuplicates Tracking 1290403 as yet unmatched pairs. 36247 records in RAM.
INFO 2026-06-08 08:51:16 MarkDuplicates Read 144,000,000 records. Elapsed time: 00:04:37s. Time for last 1,000,000: 1s. Last read position: chr3:126,006,985
INFO 2026-06-08 08:51:16 MarkDuplicates Tracking 1287826 as yet unmatched pairs. 33656 records in RAM.
INFO 2026-06-08 08:51:18 MarkDuplicates Read 145,000,000 records. Elapsed time: 00:04:39s. Time for last 1,000,000: 1s. Last read position: chr3:129,278,868
INFO 2026-06-08 08:51:18 MarkDuplicates Tracking 1284660 as yet unmatched pairs. 30477 records in RAM.
INFO 2026-06-08 08:51:19 MarkDuplicates Read 146,000,000 records. Elapsed time: 00:04:40s. Time for last 1,000,000: 1s. Last read position: chr3:136,003,158
INFO 2026-06-08 08:51:19 MarkDuplicates Tracking 1282004 as yet unmatched pairs. 27787 records in RAM.
INFO 2026-06-08 08:51:21 MarkDuplicates Read 147,000,000 records. Elapsed time: 00:04:42s. Time for last 1,000,000: 1s. Last read position: chr3:141,540,573
INFO 2026-06-08 08:51:21 MarkDuplicates Tracking 1279379 as yet unmatched pairs. 25133 records in RAM.
INFO 2026-06-08 08:51:23 MarkDuplicates Read 148,000,000 records. Elapsed time: 00:04:44s. Time for last 1,000,000: 1s. Last read position: chr3:149,375,540
INFO 2026-06-08 08:51:23 MarkDuplicates Tracking 1282575 as yet unmatched pairs. 28302 records in RAM.
INFO 2026-06-08 08:51:25 MarkDuplicates Read 149,000,000 records. Elapsed time: 00:04:46s. Time for last 1,000,000: 1s. Last read position: chr3:154,122,081
INFO 2026-06-08 08:51:25 MarkDuplicates Tracking 1274290 as yet unmatched pairs. 19984 records in RAM.
INFO 2026-06-08 08:51:26 MarkDuplicates Read 150,000,000 records. Elapsed time: 00:04:47s. Time for last 1,000,000: 1s. Last read position: chr3:161,429,426
INFO 2026-06-08 08:51:26 MarkDuplicates Tracking 1271845 as yet unmatched pairs. 17527 records in RAM.
INFO 2026-06-08 08:51:28 MarkDuplicates Read 151,000,000 records. Elapsed time: 00:04:49s. Time for last 1,000,000: 1s. Last read position: chr3:179,201,298
INFO 2026-06-08 08:51:28 MarkDuplicates Tracking 1269781 as yet unmatched pairs. 15414 records in RAM.
INFO 2026-06-08 08:51:30 MarkDuplicates Read 152,000,000 records. Elapsed time: 00:04:51s. Time for last 1,000,000: 1s. Last read position: chr3:183,752,082
INFO 2026-06-08 08:51:30 MarkDuplicates Tracking 1267306 as yet unmatched pairs. 12924 records in RAM.
INFO 2026-06-08 08:51:32 MarkDuplicates Read 153,000,000 records. Elapsed time: 00:04:53s. Time for last 1,000,000: 2s. Last read position: chr3:184,322,832
INFO 2026-06-08 08:51:32 MarkDuplicates Tracking 1264966 as yet unmatched pairs. 10573 records in RAM.
INFO 2026-06-08 08:51:34 MarkDuplicates Read 154,000,000 records. Elapsed time: 00:04:55s. Time for last 1,000,000: 1s. Last read position: chr3:186,785,086
INFO 2026-06-08 08:51:34 MarkDuplicates Tracking 1263345 as yet unmatched pairs. 8932 records in RAM.
INFO 2026-06-08 08:51:35 MarkDuplicates Read 155,000,000 records. Elapsed time: 00:04:57s. Time for last 1,000,000: 1s. Last read position: chr3:193,319,094
INFO 2026-06-08 08:51:35 MarkDuplicates Tracking 1259255 as yet unmatched pairs. 4790 records in RAM.
INFO 2026-06-08 08:51:37 MarkDuplicates Read 156,000,000 records. Elapsed time: 00:04:58s. Time for last 1,000,000: 1s. Last read position: chr3:195,725,655
INFO 2026-06-08 08:51:37 MarkDuplicates Tracking 1258749 as yet unmatched pairs. 4259 records in RAM.
INFO 2026-06-08 08:51:39 MarkDuplicates Read 157,000,000 records. Elapsed time: 00:05:00s. Time for last 1,000,000: 1s. Last read position: chr3:197,875,712
INFO 2026-06-08 08:51:39 MarkDuplicates Tracking 1255094 as yet unmatched pairs. 556 records in RAM.
INFO 2026-06-08 08:51:40 MarkDuplicates Read 158,000,000 records. Elapsed time: 00:05:02s. Time for last 1,000,000: 1s. Last read position: chr4:1,939,706
INFO 2026-06-08 08:51:40 MarkDuplicates Tracking 1252057 as yet unmatched pairs. 42749 records in RAM.
INFO 2026-06-08 08:51:42 MarkDuplicates Read 159,000,000 records. Elapsed time: 00:05:03s. Time for last 1,000,000: 1s. Last read position: chr4:6,999,124
INFO 2026-06-08 08:51:42 MarkDuplicates Tracking 1249244 as yet unmatched pairs. 39916 records in RAM.
INFO 2026-06-08 08:51:44 MarkDuplicates Read 160,000,000 records. Elapsed time: 00:05:05s. Time for last 1,000,000: 1s. Last read position: chr4:22,388,122
INFO 2026-06-08 08:51:44 MarkDuplicates Tracking 1246650 as yet unmatched pairs. 37282 records in RAM.
INFO 2026-06-08 08:51:46 MarkDuplicates Read 161,000,000 records. Elapsed time: 00:05:07s. Time for last 1,000,000: 1s. Last read position: chr4:39,778,401
INFO 2026-06-08 08:51:46 MarkDuplicates Tracking 1244621 as yet unmatched pairs. 35218 records in RAM.
INFO 2026-06-08 08:51:48 MarkDuplicates Read 162,000,000 records. Elapsed time: 00:05:09s. Time for last 1,000,000: 1s. Last read position: chr4:54,263,709
INFO 2026-06-08 08:51:48 MarkDuplicates Tracking 1241864 as yet unmatched pairs. 32432 records in RAM.
INFO 2026-06-08 08:51:50 MarkDuplicates Read 163,000,000 records. Elapsed time: 00:05:11s. Time for last 1,000,000: 2s. Last read position: chr4:57,109,980
INFO 2026-06-08 08:51:50 MarkDuplicates Tracking 1239759 as yet unmatched pairs. 30320 records in RAM.
INFO 2026-06-08 08:51:52 MarkDuplicates Read 164,000,000 records. Elapsed time: 00:05:14s. Time for last 1,000,000: 2s. Last read position: chr4:76,002,700
INFO 2026-06-08 08:51:52 MarkDuplicates Tracking 1236169 as yet unmatched pairs. 26702 records in RAM.
INFO 2026-06-08 08:51:55 MarkDuplicates Read 165,000,000 records. Elapsed time: 00:05:16s. Time for last 1,000,000: 2s. Last read position: chr4:82,355,352
INFO 2026-06-08 08:51:55 MarkDuplicates Tracking 1234485 as yet unmatched pairs. 25000 records in RAM.
INFO 2026-06-08 08:51:56 MarkDuplicates Read 166,000,000 records. Elapsed time: 00:05:18s. Time for last 1,000,000: 1s. Last read position: chr4:87,047,029
INFO 2026-06-08 08:51:56 MarkDuplicates Tracking 1231487 as yet unmatched pairs. 21988 records in RAM.
INFO 2026-06-08 08:51:58 MarkDuplicates Read 167,000,000 records. Elapsed time: 00:05:19s. Time for last 1,000,000: 1s. Last read position: chr4:99,307,611
INFO 2026-06-08 08:51:58 MarkDuplicates Tracking 1229062 as yet unmatched pairs. 19545 records in RAM.
INFO 2026-06-08 08:52:00 MarkDuplicates Read 168,000,000 records. Elapsed time: 00:05:21s. Time for last 1,000,000: 1s. Last read position: chr4:107,989,908
INFO 2026-06-08 08:52:00 MarkDuplicates Tracking 1226551 as yet unmatched pairs. 17007 records in RAM.
INFO 2026-06-08 08:52:02 MarkDuplicates Read 169,000,000 records. Elapsed time: 00:05:23s. Time for last 1,000,000: 1s. Last read position: chr4:119,460,219
INFO 2026-06-08 08:52:02 MarkDuplicates Tracking 1223428 as yet unmatched pairs. 13853 records in RAM.
INFO 2026-06-08 08:52:03 MarkDuplicates Read 170,000,000 records. Elapsed time: 00:05:24s. Time for last 1,000,000: 1s. Last read position: chr4:128,862,026
INFO 2026-06-08 08:52:03 MarkDuplicates Tracking 1220985 as yet unmatched pairs. 11400 records in RAM.
INFO 2026-06-08 08:52:05 MarkDuplicates Read 171,000,000 records. Elapsed time: 00:05:26s. Time for last 1,000,000: 1s. Last read position: chr4:148,436,409
INFO 2026-06-08 08:52:05 MarkDuplicates Tracking 1218867 as yet unmatched pairs. 9247 records in RAM.
INFO 2026-06-08 08:52:07 MarkDuplicates Read 172,000,000 records. Elapsed time: 00:05:28s. Time for last 1,000,000: 1s. Last read position: chr4:153,620,834
INFO 2026-06-08 08:52:07 MarkDuplicates Tracking 1216299 as yet unmatched pairs. 6640 records in RAM.
INFO 2026-06-08 08:52:08 MarkDuplicates Read 173,000,000 records. Elapsed time: 00:05:29s. Time for last 1,000,000: 1s. Last read position: chr4:168,898,490
INFO 2026-06-08 08:52:08 MarkDuplicates Tracking 1214737 as yet unmatched pairs. 5053 records in RAM.
INFO 2026-06-08 08:52:10 MarkDuplicates Read 174,000,000 records. Elapsed time: 00:05:31s. Time for last 1,000,000: 1s. Last read position: chr4:185,429,318
INFO 2026-06-08 08:52:10 MarkDuplicates Tracking 1211156 as yet unmatched pairs. 1432 records in RAM.
INFO 2026-06-08 08:52:12 MarkDuplicates Read 175,000,000 records. Elapsed time: 00:05:34s. Time for last 1,000,000: 2s. Last read position: chr5:1,318,385
INFO 2026-06-08 08:52:12 MarkDuplicates Tracking 1209353 as yet unmatched pairs. 72627 records in RAM.
INFO 2026-06-08 08:52:14 MarkDuplicates Read 176,000,000 records. Elapsed time: 00:05:35s. Time for last 1,000,000: 1s. Last read position: chr5:14,286,913
INFO 2026-06-08 08:52:14 MarkDuplicates Tracking 1209026 as yet unmatched pairs. 72277 records in RAM.
INFO 2026-06-08 08:52:16 MarkDuplicates Read 177,000,000 records. Elapsed time: 00:05:37s. Time for last 1,000,000: 1s. Last read position: chr5:16,477,675
INFO 2026-06-08 08:52:16 MarkDuplicates Tracking 1203229 as yet unmatched pairs. 66468 records in RAM.
INFO 2026-06-08 08:52:17 MarkDuplicates Read 178,000,000 records. Elapsed time: 00:05:39s. Time for last 1,000,000: 1s. Last read position: chr5:36,171,693
INFO 2026-06-08 08:52:17 MarkDuplicates Tracking 1200890 as yet unmatched pairs. 64106 records in RAM.
INFO 2026-06-08 08:52:19 MarkDuplicates Read 179,000,000 records. Elapsed time: 00:05:40s. Time for last 1,000,000: 1s. Last read position: chr5:40,937,551
INFO 2026-06-08 08:52:19 MarkDuplicates Tracking 1199833 as yet unmatched pairs. 63029 records in RAM.
INFO 2026-06-08 08:52:21 MarkDuplicates Read 180,000,000 records. Elapsed time: 00:05:42s. Time for last 1,000,000: 2s. Last read position: chr5:55,951,526
INFO 2026-06-08 08:52:21 MarkDuplicates Tracking 1196246 as yet unmatched pairs. 59429 records in RAM.
INFO 2026-06-08 08:52:24 MarkDuplicates Read 181,000,000 records. Elapsed time: 00:05:45s. Time for last 1,000,000: 2s. Last read position: chr5:70,441,340
INFO 2026-06-08 08:52:24 MarkDuplicates Tracking 1194010 as yet unmatched pairs. 57168 records in RAM.
INFO 2026-06-08 08:52:26 MarkDuplicates Read 182,000,000 records. Elapsed time: 00:05:47s. Time for last 1,000,000: 1s. Last read position: chr5:75,360,043
INFO 2026-06-08 08:52:26 MarkDuplicates Tracking 1191380 as yet unmatched pairs. 54527 records in RAM.
INFO 2026-06-08 08:52:27 MarkDuplicates Read 183,000,000 records. Elapsed time: 00:05:48s. Time for last 1,000,000: 1s. Last read position: chr5:82,276,168
INFO 2026-06-08 08:52:27 MarkDuplicates Tracking 1195021 as yet unmatched pairs. 58124 records in RAM.
INFO 2026-06-08 08:52:29 MarkDuplicates Read 184,000,000 records. Elapsed time: 00:05:50s. Time for last 1,000,000: 1s. Last read position: chr5:93,683,132
INFO 2026-06-08 08:52:29 MarkDuplicates Tracking 1187068 as yet unmatched pairs. 50142 records in RAM.
INFO 2026-06-08 08:52:30 MarkDuplicates Read 185,000,000 records. Elapsed time: 00:05:52s. Time for last 1,000,000: 1s. Last read position: chr5:107,670,511
INFO 2026-06-08 08:52:30 MarkDuplicates Tracking 1184602 as yet unmatched pairs. 47637 records in RAM.
INFO 2026-06-08 08:52:32 MarkDuplicates Read 186,000,000 records. Elapsed time: 00:05:53s. Time for last 1,000,000: 1s. Last read position: chr5:123,412,441
INFO 2026-06-08 08:52:32 MarkDuplicates Tracking 1181826 as yet unmatched pairs. 44833 records in RAM.
INFO 2026-06-08 08:52:34 MarkDuplicates Read 187,000,000 records. Elapsed time: 00:05:55s. Time for last 1,000,000: 1s. Last read position: chr5:133,973,794
INFO 2026-06-08 08:52:34 MarkDuplicates Tracking 1179553 as yet unmatched pairs. 42523 records in RAM.
INFO 2026-06-08 08:52:36 MarkDuplicates Read 188,000,000 records. Elapsed time: 00:05:57s. Time for last 1,000,000: 1s. Last read position: chr5:138,466,054
INFO 2026-06-08 08:52:36 MarkDuplicates Tracking 1177281 as yet unmatched pairs. 40239 records in RAM.
INFO 2026-06-08 08:52:37 MarkDuplicates Read 189,000,000 records. Elapsed time: 00:05:58s. Time for last 1,000,000: 1s. Last read position: chr5:140,567,421
INFO 2026-06-08 08:52:37 MarkDuplicates Tracking 1174252 as yet unmatched pairs. 37170 records in RAM.
INFO 2026-06-08 08:52:39 MarkDuplicates Read 190,000,000 records. Elapsed time: 00:06:00s. Time for last 1,000,000: 1s. Last read position: chr5:141,189,276
INFO 2026-06-08 08:52:39 MarkDuplicates Tracking 1172350 as yet unmatched pairs. 35266 records in RAM.
INFO 2026-06-08 08:52:40 MarkDuplicates Read 191,000,000 records. Elapsed time: 00:06:01s. Time for last 1,000,000: 1s. Last read position: chr5:141,865,215
INFO 2026-06-08 08:52:40 MarkDuplicates Tracking 1169465 as yet unmatched pairs. 32372 records in RAM.
INFO 2026-06-08 08:52:42 MarkDuplicates Read 192,000,000 records. Elapsed time: 00:06:03s. Time for last 1,000,000: 1s. Last read position: chr5:150,080,056
INFO 2026-06-08 08:52:42 MarkDuplicates Tracking 1167123 as yet unmatched pairs. 30001 records in RAM.
INFO 2026-06-08 08:52:44 MarkDuplicates Read 193,000,000 records. Elapsed time: 00:06:05s. Time for last 1,000,000: 2s. Last read position: chr5:150,402,157
INFO 2026-06-08 08:52:44 MarkDuplicates Tracking 1190129 as yet unmatched pairs. 52998 records in RAM.
INFO 2026-06-08 08:52:45 MarkDuplicates Read 194,000,000 records. Elapsed time: 00:06:07s. Time for last 1,000,000: 1s. Last read position: chr5:150,403,253
INFO 2026-06-08 08:52:45 MarkDuplicates Tracking 1193644 as yet unmatched pairs. 56488 records in RAM.
INFO 2026-06-08 08:52:47 MarkDuplicates Read 195,000,000 records. Elapsed time: 00:06:09s. Time for last 1,000,000: 2s. Last read position: chr5:150,405,169
INFO 2026-06-08 08:52:47 MarkDuplicates Tracking 1203312 as yet unmatched pairs. 66147 records in RAM.
INFO 2026-06-08 08:52:50 MarkDuplicates Read 196,000,000 records. Elapsed time: 00:06:11s. Time for last 1,000,000: 2s. Last read position: chr5:150,444,295
INFO 2026-06-08 08:52:50 MarkDuplicates Tracking 1157369 as yet unmatched pairs. 20182 records in RAM.
INFO 2026-06-08 08:52:52 MarkDuplicates Read 197,000,000 records. Elapsed time: 00:06:13s. Time for last 1,000,000: 1s. Last read position: chr5:151,663,589
INFO 2026-06-08 08:52:52 MarkDuplicates Tracking 1155396 as yet unmatched pairs. 18202 records in RAM.
INFO 2026-06-08 08:52:53 MarkDuplicates Read 198,000,000 records. Elapsed time: 00:06:15s. Time for last 1,000,000: 1s. Last read position: chr5:163,512,002
INFO 2026-06-08 08:52:53 MarkDuplicates Tracking 1150491 as yet unmatched pairs. 13278 records in RAM.
INFO 2026-06-08 08:52:55 MarkDuplicates Read 199,000,000 records. Elapsed time: 00:06:16s. Time for last 1,000,000: 1s. Last read position: chr5:171,392,774
INFO 2026-06-08 08:52:55 MarkDuplicates Tracking 1159139 as yet unmatched pairs. 21901 records in RAM.
INFO 2026-06-08 08:52:57 MarkDuplicates Read 200,000,000 records. Elapsed time: 00:06:18s. Time for last 1,000,000: 1s. Last read position: chr5:176,968,704
INFO 2026-06-08 08:52:57 MarkDuplicates Tracking 1145138 as yet unmatched pairs. 7882 records in RAM.
INFO 2026-06-08 08:52:58 MarkDuplicates Read 201,000,000 records. Elapsed time: 00:06:19s. Time for last 1,000,000: 1s. Last read position: chr5:179,616,902
INFO 2026-06-08 08:52:58 MarkDuplicates Tracking 1144418 as yet unmatched pairs. 7141 records in RAM.
INFO 2026-06-08 08:53:00 MarkDuplicates Read 202,000,000 records. Elapsed time: 00:06:21s. Time for last 1,000,000: 1s. Last read position: chr5:179,836,603
INFO 2026-06-08 08:53:00 MarkDuplicates Tracking 1140622 as yet unmatched pairs. 3333 records in RAM.
INFO 2026-06-08 08:53:02 MarkDuplicates Read 203,000,000 records. Elapsed time: 00:06:24s. Time for last 1,000,000: 2s. Last read position: chr6:2,970,708
INFO 2026-06-08 08:53:02 MarkDuplicates Tracking 1136689 as yet unmatched pairs. 90806 records in RAM.
INFO 2026-06-08 08:53:04 MarkDuplicates Read 204,000,000 records. Elapsed time: 00:06:25s. Time for last 1,000,000: 1s. Last read position: chr6:7,579,310
INFO 2026-06-08 08:53:04 MarkDuplicates Tracking 1134854 as yet unmatched pairs. 88955 records in RAM.
INFO 2026-06-08 08:53:06 MarkDuplicates Read 205,000,000 records. Elapsed time: 00:06:27s. Time for last 1,000,000: 1s. Last read position: chr6:16,306,428
INFO 2026-06-08 08:53:06 MarkDuplicates Tracking 1131555 as yet unmatched pairs. 85646 records in RAM.
INFO 2026-06-08 08:53:07 MarkDuplicates Read 206,000,000 records. Elapsed time: 00:06:29s. Time for last 1,000,000: 1s. Last read position: chr6:26,027,108
INFO 2026-06-08 08:53:07 MarkDuplicates Tracking 1129064 as yet unmatched pairs. 83117 records in RAM.
INFO 2026-06-08 08:53:09 MarkDuplicates Read 207,000,000 records. Elapsed time: 00:06:30s. Time for last 1,000,000: 1s. Last read position: chr6:27,146,469
INFO 2026-06-08 08:53:09 MarkDuplicates Tracking 1129111 as yet unmatched pairs. 83151 records in RAM.
INFO 2026-06-08 08:53:11 MarkDuplicates Read 208,000,000 records. Elapsed time: 00:06:32s. Time for last 1,000,000: 1s. Last read position: chr6:29,944,289
INFO 2026-06-08 08:53:11 MarkDuplicates Tracking 1131536 as yet unmatched pairs. 85563 records in RAM.
INFO 2026-06-08 08:53:12 MarkDuplicates Read 209,000,000 records. Elapsed time: 00:06:33s. Time for last 1,000,000: 1s. Last read position: chr6:30,723,910
INFO 2026-06-08 08:53:12 MarkDuplicates Tracking 1121398 as yet unmatched pairs. 75416 records in RAM.
INFO 2026-06-08 08:53:14 MarkDuplicates Read 210,000,000 records. Elapsed time: 00:06:35s. Time for last 1,000,000: 2s. Last read position: chr6:31,354,253
INFO 2026-06-08 08:53:14 MarkDuplicates Tracking 1128299 as yet unmatched pairs. 82301 records in RAM.
INFO 2026-06-08 08:53:16 MarkDuplicates Read 211,000,000 records. Elapsed time: 00:06:37s. Time for last 1,000,000: 1s. Last read position: chr6:31,642,305
INFO 2026-06-08 08:53:16 MarkDuplicates Tracking 1116193 as yet unmatched pairs. 70186 records in RAM.
INFO 2026-06-08 08:53:18 MarkDuplicates Read 212,000,000 records. Elapsed time: 00:06:39s. Time for last 1,000,000: 1s. Last read position: chr6:31,829,082
INFO 2026-06-08 08:53:18 MarkDuplicates Tracking 1114918 as yet unmatched pairs. 68907 records in RAM.
INFO 2026-06-08 08:53:20 MarkDuplicates Read 213,000,000 records. Elapsed time: 00:06:41s. Time for last 1,000,000: 1s. Last read position: chr6:32,096,722
INFO 2026-06-08 08:53:20 MarkDuplicates Tracking 1111588 as yet unmatched pairs. 65564 records in RAM.
INFO 2026-06-08 08:53:22 MarkDuplicates Read 214,000,000 records. Elapsed time: 00:06:43s. Time for last 1,000,000: 1s. Last read position: chr6:32,666,501
INFO 2026-06-08 08:53:22 MarkDuplicates Tracking 1109465 as yet unmatched pairs. 63422 records in RAM.
INFO 2026-06-08 08:53:23 MarkDuplicates Read 215,000,000 records. Elapsed time: 00:06:44s. Time for last 1,000,000: 1s. Last read position: chr6:33,198,413
INFO 2026-06-08 08:53:23 MarkDuplicates Tracking 1106284 as yet unmatched pairs. 60233 records in RAM.
INFO 2026-06-08 08:53:25 MarkDuplicates Read 216,000,000 records. Elapsed time: 00:06:46s. Time for last 1,000,000: 1s. Last read position: chr6:33,415,954
INFO 2026-06-08 08:53:25 MarkDuplicates Tracking 1105468 as yet unmatched pairs. 59400 records in RAM.
INFO 2026-06-08 08:53:26 MarkDuplicates Read 217,000,000 records. Elapsed time: 00:06:48s. Time for last 1,000,000: 1s. Last read position: chr6:35,476,013
INFO 2026-06-08 08:53:26 MarkDuplicates Tracking 1100654 as yet unmatched pairs. 54568 records in RAM.
INFO 2026-06-08 08:53:28 MarkDuplicates Read 218,000,000 records. Elapsed time: 00:06:49s. Time for last 1,000,000: 1s. Last read position: chr6:39,913,427
INFO 2026-06-08 08:53:28 MarkDuplicates Tracking 1097947 as yet unmatched pairs. 51837 records in RAM.
INFO 2026-06-08 08:53:30 MarkDuplicates Read 219,000,000 records. Elapsed time: 00:06:51s. Time for last 1,000,000: 1s. Last read position: chr6:43,018,366
INFO 2026-06-08 08:53:30 MarkDuplicates Tracking 1095488 as yet unmatched pairs. 49342 records in RAM.
INFO 2026-06-08 08:53:31 MarkDuplicates Read 220,000,000 records. Elapsed time: 00:06:53s. Time for last 1,000,000: 1s. Last read position: chr6:43,597,703
INFO 2026-06-08 08:53:31 MarkDuplicates Tracking 1092156 as yet unmatched pairs. 45987 records in RAM.
INFO 2026-06-08 08:53:33 MarkDuplicates Read 221,000,000 records. Elapsed time: 00:06:54s. Time for last 1,000,000: 1s. Last read position: chr6:44,250,093
INFO 2026-06-08 08:53:33 MarkDuplicates Tracking 1090283 as yet unmatched pairs. 44102 records in RAM.
INFO 2026-06-08 08:53:35 MarkDuplicates Read 222,000,000 records. Elapsed time: 00:06:56s. Time for last 1,000,000: 1s. Last read position: chr6:52,403,546
INFO 2026-06-08 08:53:35 MarkDuplicates Tracking 1087021 as yet unmatched pairs. 40822 records in RAM.
INFO 2026-06-08 08:53:36 MarkDuplicates Read 223,000,000 records. Elapsed time: 00:06:58s. Time for last 1,000,000: 1s. Last read position: chr6:56,614,479
INFO 2026-06-08 08:53:36 MarkDuplicates Tracking 1085208 as yet unmatched pairs. 38922 records in RAM.
INFO 2026-06-08 08:53:39 MarkDuplicates Read 224,000,000 records. Elapsed time: 00:07:00s. Time for last 1,000,000: 2s. Last read position: chr6:71,301,571
INFO 2026-06-08 08:53:39 MarkDuplicates Tracking 1084552 as yet unmatched pairs. 38260 records in RAM.
INFO 2026-06-08 08:53:41 MarkDuplicates Read 225,000,000 records. Elapsed time: 00:07:02s. Time for last 1,000,000: 1s. Last read position: chr6:75,861,022
INFO 2026-06-08 08:53:41 MarkDuplicates Tracking 1080045 as yet unmatched pairs. 33724 records in RAM.
INFO 2026-06-08 08:53:42 MarkDuplicates Read 226,000,000 records. Elapsed time: 00:07:03s. Time for last 1,000,000: 1s. Last read position: chr6:85,640,262
INFO 2026-06-08 08:53:42 MarkDuplicates Tracking 1078292 as yet unmatched pairs. 31947 records in RAM.
INFO 2026-06-08 08:53:44 MarkDuplicates Read 227,000,000 records. Elapsed time: 00:07:06s. Time for last 1,000,000: 2s. Last read position: chr6:96,523,290
INFO 2026-06-08 08:53:44 MarkDuplicates Tracking 1074836 as yet unmatched pairs. 28465 records in RAM.
INFO 2026-06-08 08:53:46 MarkDuplicates Read 228,000,000 records. Elapsed time: 00:07:07s. Time for last 1,000,000: 1s. Last read position: chr6:107,459,095
INFO 2026-06-08 08:53:46 MarkDuplicates Tracking 1072194 as yet unmatched pairs. 25801 records in RAM.
INFO 2026-06-08 08:53:48 MarkDuplicates Read 229,000,000 records. Elapsed time: 00:07:09s. Time for last 1,000,000: 1s. Last read position: chr6:111,661,671
INFO 2026-06-08 08:53:48 MarkDuplicates Tracking 1069586 as yet unmatched pairs. 23170 records in RAM.
INFO 2026-06-08 08:53:50 MarkDuplicates Read 230,000,000 records. Elapsed time: 00:07:11s. Time for last 1,000,000: 1s. Last read position: chr6:122,458,617
INFO 2026-06-08 08:53:50 MarkDuplicates Tracking 1067412 as yet unmatched pairs. 20981 records in RAM.
INFO 2026-06-08 08:53:51 MarkDuplicates Read 231,000,000 records. Elapsed time: 00:07:13s. Time for last 1,000,000: 1s. Last read position: chr6:130,885,114
INFO 2026-06-08 08:53:51 MarkDuplicates Tracking 1064709 as yet unmatched pairs. 18251 records in RAM.
INFO 2026-06-08 08:53:53 MarkDuplicates Read 232,000,000 records. Elapsed time: 00:07:14s. Time for last 1,000,000: 1s. Last read position: chr6:136,414,905
INFO 2026-06-08 08:53:53 MarkDuplicates Tracking 1061957 as yet unmatched pairs. 15476 records in RAM.
INFO 2026-06-08 08:53:55 MarkDuplicates Read 233,000,000 records. Elapsed time: 00:07:16s. Time for last 1,000,000: 2s. Last read position: chr6:139,373,555
INFO 2026-06-08 08:53:55 MarkDuplicates Tracking 1059532 as yet unmatched pairs. 13041 records in RAM.
INFO 2026-06-08 08:53:58 MarkDuplicates Read 234,000,000 records. Elapsed time: 00:07:19s. Time for last 1,000,000: 2s. Last read position: chr6:149,572,304
INFO 2026-06-08 08:53:58 MarkDuplicates Tracking 1056812 as yet unmatched pairs. 10312 records in RAM.
INFO 2026-06-08 08:54:00 MarkDuplicates Read 235,000,000 records. Elapsed time: 00:07:21s. Time for last 1,000,000: 1s. Last read position: chr6:157,292,961
INFO 2026-06-08 08:54:00 MarkDuplicates Tracking 1054025 as yet unmatched pairs. 7509 records in RAM.
INFO 2026-06-08 08:54:01 MarkDuplicates Read 236,000,000 records. Elapsed time: 00:07:22s. Time for last 1,000,000: 1s. Last read position: chr6:159,780,504
INFO 2026-06-08 08:54:01 MarkDuplicates Tracking 1051868 as yet unmatched pairs. 5338 records in RAM.
INFO 2026-06-08 08:54:03 MarkDuplicates Read 237,000,000 records. Elapsed time: 00:07:24s. Time for last 1,000,000: 1s. Last read position: chr6:167,947,927
INFO 2026-06-08 08:54:03 MarkDuplicates Tracking 1049157 as yet unmatched pairs. 2604 records in RAM.
INFO 2026-06-08 08:54:05 MarkDuplicates Read 238,000,000 records. Elapsed time: 00:07:26s. Time for last 1,000,000: 2s. Last read position: chr7:1,158,077
INFO 2026-06-08 08:54:05 MarkDuplicates Tracking 1045838 as yet unmatched pairs. 87042 records in RAM.
INFO 2026-06-08 08:54:07 MarkDuplicates Read 239,000,000 records. Elapsed time: 00:07:28s. Time for last 1,000,000: 1s. Last read position: chr7:5,359,490
INFO 2026-06-08 08:54:07 MarkDuplicates Tracking 1042644 as yet unmatched pairs. 83829 records in RAM.
INFO 2026-06-08 08:54:09 MarkDuplicates Read 240,000,000 records. Elapsed time: 00:07:30s. Time for last 1,000,000: 1s. Last read position: chr7:5,528,422
INFO 2026-06-08 08:54:09 MarkDuplicates Tracking 1047643 as yet unmatched pairs. 88822 records in RAM.
INFO 2026-06-08 08:54:11 MarkDuplicates Read 241,000,000 records. Elapsed time: 00:07:32s. Time for last 1,000,000: 2s. Last read position: chr7:6,044,644
INFO 2026-06-08 08:54:11 MarkDuplicates Tracking 1037476 as yet unmatched pairs. 78642 records in RAM.
INFO 2026-06-08 08:54:13 MarkDuplicates Read 242,000,000 records. Elapsed time: 00:07:34s. Time for last 1,000,000: 1s. Last read position: chr7:20,381,839
INFO 2026-06-08 08:54:13 MarkDuplicates Tracking 1035115 as yet unmatched pairs. 76252 records in RAM.
INFO 2026-06-08 08:54:15 MarkDuplicates Read 243,000,000 records. Elapsed time: 00:07:36s. Time for last 1,000,000: 1s. Last read position: chr7:26,197,318
INFO 2026-06-08 08:54:15 MarkDuplicates Tracking 1034001 as yet unmatched pairs. 75119 records in RAM.
INFO 2026-06-08 08:54:17 MarkDuplicates Read 244,000,000 records. Elapsed time: 00:07:38s. Time for last 1,000,000: 1s. Last read position: chr7:34,973,603
INFO 2026-06-08 08:54:17 MarkDuplicates Tracking 1029480 as yet unmatched pairs. 70568 records in RAM.
INFO 2026-06-08 08:54:18 MarkDuplicates Read 245,000,000 records. Elapsed time: 00:07:39s. Time for last 1,000,000: 1s. Last read position: chr7:44,051,920
INFO 2026-06-08 08:54:18 MarkDuplicates Tracking 1027494 as yet unmatched pairs. 68565 records in RAM.
INFO 2026-06-08 08:54:20 MarkDuplicates Read 246,000,000 records. Elapsed time: 00:07:41s. Time for last 1,000,000: 1s. Last read position: chr7:44,799,820
INFO 2026-06-08 08:54:20 MarkDuplicates Tracking 1027918 as yet unmatched pairs. 68974 records in RAM.
INFO 2026-06-08 08:54:22 MarkDuplicates Read 247,000,000 records. Elapsed time: 00:07:43s. Time for last 1,000,000: 1s. Last read position: chr7:55,181,336
INFO 2026-06-08 08:54:22 MarkDuplicates Tracking 1021779 as yet unmatched pairs. 62812 records in RAM.
INFO 2026-06-08 08:55:28 MarkDuplicates Read 248,000,000 records. Elapsed time: 00:08:49s. Time for last 1,000,000: 66s. Last read position: chr7:72,869,117
INFO 2026-06-08 08:55:28 MarkDuplicates Tracking 1018851 as yet unmatched pairs. 59818 records in RAM.
INFO 2026-06-08 08:55:31 MarkDuplicates Read 249,000,000 records. Elapsed time: 00:08:52s. Time for last 1,000,000: 2s. Last read position: chr7:74,041,236
INFO 2026-06-08 08:55:31 MarkDuplicates Tracking 1018607 as yet unmatched pairs. 59567 records in RAM.
INFO 2026-06-08 08:55:32 MarkDuplicates Read 250,000,000 records. Elapsed time: 00:08:54s. Time for last 1,000,000: 1s. Last read position: chr7:75,213,490
INFO 2026-06-08 08:55:32 MarkDuplicates Tracking 1014742 as yet unmatched pairs. 55696 records in RAM.
INFO 2026-06-08 08:55:34 MarkDuplicates Read 251,000,000 records. Elapsed time: 00:08:55s. Time for last 1,000,000: 1s. Last read position: chr7:77,025,008
INFO 2026-06-08 08:55:34 MarkDuplicates Tracking 1012209 as yet unmatched pairs. 53157 records in RAM.
INFO 2026-06-08 08:55:37 MarkDuplicates Read 252,000,000 records. Elapsed time: 00:08:58s. Time for last 1,000,000: 2s. Last read position: chr7:92,031,513
INFO 2026-06-08 08:55:37 MarkDuplicates Tracking 1010857 as yet unmatched pairs. 51787 records in RAM.
INFO 2026-06-08 08:55:39 MarkDuplicates Read 253,000,000 records. Elapsed time: 00:09:00s. Time for last 1,000,000: 1s. Last read position: chr7:94,406,282
INFO 2026-06-08 08:55:39 MarkDuplicates Tracking 1010664 as yet unmatched pairs. 51586 records in RAM.
INFO 2026-06-08 08:55:40 MarkDuplicates Read 254,000,000 records. Elapsed time: 00:09:02s. Time for last 1,000,000: 1s. Last read position: chr7:94,429,221
INFO 2026-06-08 08:55:40 MarkDuplicates Tracking 1005286 as yet unmatched pairs. 46194 records in RAM.
INFO 2026-06-08 08:55:42 MarkDuplicates Read 255,000,000 records. Elapsed time: 00:09:03s. Time for last 1,000,000: 1s. Last read position: chr7:99,392,819
INFO 2026-06-08 08:55:42 MarkDuplicates Tracking 1002263 as yet unmatched pairs. 43155 records in RAM.
INFO 2026-06-08 08:55:44 MarkDuplicates Read 256,000,000 records. Elapsed time: 00:09:05s. Time for last 1,000,000: 1s. Last read position: chr7:100,181,913
INFO 2026-06-08 08:55:44 MarkDuplicates Tracking 998975 as yet unmatched pairs. 39866 records in RAM.
INFO 2026-06-08 08:55:46 MarkDuplicates Read 257,000,000 records. Elapsed time: 00:09:07s. Time for last 1,000,000: 1s. Last read position: chr7:100,888,084
INFO 2026-06-08 08:55:46 MarkDuplicates Tracking 996494 as yet unmatched pairs. 37373 records in RAM.
INFO 2026-06-08 08:55:47 MarkDuplicates Read 258,000,000 records. Elapsed time: 00:09:09s. Time for last 1,000,000: 1s. Last read position: chr7:102,652,362
INFO 2026-06-08 08:55:47 MarkDuplicates Tracking 995119 as yet unmatched pairs. 35995 records in RAM.
INFO 2026-06-08 08:55:50 MarkDuplicates Read 259,000,000 records. Elapsed time: 00:09:11s. Time for last 1,000,000: 2s. Last read position: chr7:107,902,323
INFO 2026-06-08 08:55:50 MarkDuplicates Tracking 992346 as yet unmatched pairs. 33211 records in RAM.
INFO 2026-06-08 08:55:52 MarkDuplicates Read 260,000,000 records. Elapsed time: 00:09:13s. Time for last 1,000,000: 1s. Last read position: chr7:117,320,695
INFO 2026-06-08 08:55:52 MarkDuplicates Tracking 989362 as yet unmatched pairs. 30203 records in RAM.
INFO 2026-06-08 08:55:54 MarkDuplicates Read 261,000,000 records. Elapsed time: 00:09:15s. Time for last 1,000,000: 1s. Last read position: chr7:122,040,929
INFO 2026-06-08 08:55:54 MarkDuplicates Tracking 990021 as yet unmatched pairs. 30845 records in RAM.
INFO 2026-06-08 08:55:56 MarkDuplicates Read 262,000,000 records. Elapsed time: 00:09:17s. Time for last 1,000,000: 1s. Last read position: chr7:127,704,846
INFO 2026-06-08 08:55:56 MarkDuplicates Tracking 988845 as yet unmatched pairs. 29649 records in RAM.
INFO 2026-06-08 08:55:57 MarkDuplicates Read 263,000,000 records. Elapsed time: 00:09:19s. Time for last 1,000,000: 1s. Last read position: chr7:128,769,070
INFO 2026-06-08 08:55:57 MarkDuplicates Tracking 983233 as yet unmatched pairs. 24030 records in RAM.
INFO 2026-06-08 08:56:01 MarkDuplicates Read 264,000,000 records. Elapsed time: 00:09:22s. Time for last 1,000,000: 3s. Last read position: chr7:135,186,166
INFO 2026-06-08 08:56:01 MarkDuplicates Tracking 979959 as yet unmatched pairs. 20718 records in RAM.
INFO 2026-06-08 08:56:02 MarkDuplicates Read 265,000,000 records. Elapsed time: 00:09:24s. Time for last 1,000,000: 1s. Last read position: chr7:138,570,831
INFO 2026-06-08 08:56:02 MarkDuplicates Tracking 977887 as yet unmatched pairs. 18633 records in RAM.
INFO 2026-06-08 08:56:04 MarkDuplicates Read 266,000,000 records. Elapsed time: 00:09:25s. Time for last 1,000,000: 1s. Last read position: chr7:140,704,882
INFO 2026-06-08 08:56:04 MarkDuplicates Tracking 974765 as yet unmatched pairs. 15500 records in RAM.
INFO 2026-06-08 08:56:06 MarkDuplicates Read 267,000,000 records. Elapsed time: 00:09:27s. Time for last 1,000,000: 1s. Last read position: chr7:143,382,418
INFO 2026-06-08 08:56:06 MarkDuplicates Tracking 972432 as yet unmatched pairs. 13147 records in RAM.
INFO 2026-06-08 08:56:07 MarkDuplicates Read 268,000,000 records. Elapsed time: 00:09:29s. Time for last 1,000,000: 1s. Last read position: chr7:144,273,977
INFO 2026-06-08 08:56:07 MarkDuplicates Tracking 970389 as yet unmatched pairs. 11100 records in RAM.
INFO 2026-06-08 08:56:09 MarkDuplicates Read 269,000,000 records. Elapsed time: 00:09:30s. Time for last 1,000,000: 1s. Last read position: chr7:149,455,852
INFO 2026-06-08 08:56:09 MarkDuplicates Tracking 968454 as yet unmatched pairs. 9143 records in RAM.
INFO 2026-06-08 08:56:11 MarkDuplicates Read 270,000,000 records. Elapsed time: 00:09:32s. Time for last 1,000,000: 1s. Last read position: chr7:151,214,665
INFO 2026-06-08 08:56:11 MarkDuplicates Tracking 965240 as yet unmatched pairs. 5911 records in RAM.
INFO 2026-06-08 08:56:12 MarkDuplicates Read 271,000,000 records. Elapsed time: 00:09:33s. Time for last 1,000,000: 1s. Last read position: chr7:152,202,896
INFO 2026-06-08 08:56:12 MarkDuplicates Tracking 964799 as yet unmatched pairs. 5445 records in RAM.
INFO 2026-06-08 08:56:15 MarkDuplicates Read 272,000,000 records. Elapsed time: 00:09:36s. Time for last 1,000,000: 2s. Last read position: chr7:158,748,237
INFO 2026-06-08 08:56:15 MarkDuplicates Tracking 960748 as yet unmatched pairs. 1382 records in RAM.
INFO 2026-06-08 08:56:18 MarkDuplicates Read 273,000,000 records. Elapsed time: 00:09:39s. Time for last 1,000,000: 2s. Last read position: chr8:11,847,802
INFO 2026-06-08 08:56:18 MarkDuplicates Tracking 960845 as yet unmatched pairs. 58981 records in RAM.
INFO 2026-06-08 08:56:19 MarkDuplicates Read 274,000,000 records. Elapsed time: 00:09:41s. Time for last 1,000,000: 1s. Last read position: chr8:22,100,888
INFO 2026-06-08 08:56:19 MarkDuplicates Tracking 954824 as yet unmatched pairs. 52951 records in RAM.
INFO 2026-06-08 08:56:21 MarkDuplicates Read 275,000,000 records. Elapsed time: 00:09:42s. Time for last 1,000,000: 1s. Last read position: chr8:26,634,816
INFO 2026-06-08 08:56:21 MarkDuplicates Tracking 952123 as yet unmatched pairs. 50238 records in RAM.
INFO 2026-06-08 08:56:23 MarkDuplicates Read 276,000,000 records. Elapsed time: 00:09:44s. Time for last 1,000,000: 1s. Last read position: chr8:31,096,781
INFO 2026-06-08 08:56:23 MarkDuplicates Tracking 949320 as yet unmatched pairs. 47402 records in RAM.
INFO 2026-06-08 08:56:26 MarkDuplicates Read 277,000,000 records. Elapsed time: 00:09:47s. Time for last 1,000,000: 2s. Last read position: chr8:38,347,927
INFO 2026-06-08 08:56:26 MarkDuplicates Tracking 948230 as yet unmatched pairs. 46294 records in RAM.
INFO 2026-06-08 08:56:28 MarkDuplicates Read 278,000,000 records. Elapsed time: 00:09:49s. Time for last 1,000,000: 1s. Last read position: chr8:41,265,393
INFO 2026-06-08 08:56:28 MarkDuplicates Tracking 948239 as yet unmatched pairs. 46281 records in RAM.
INFO 2026-06-08 08:56:29 MarkDuplicates Read 279,000,000 records. Elapsed time: 00:09:50s. Time for last 1,000,000: 1s. Last read position: chr8:47,807,152
INFO 2026-06-08 08:56:29 MarkDuplicates Tracking 941510 as yet unmatched pairs. 39531 records in RAM.
INFO 2026-06-08 08:56:31 MarkDuplicates Read 280,000,000 records. Elapsed time: 00:09:52s. Time for last 1,000,000: 1s. Last read position: chr8:56,073,174
INFO 2026-06-08 08:56:31 MarkDuplicates Tracking 946445 as yet unmatched pairs. 44451 records in RAM.
INFO 2026-06-08 08:56:33 MarkDuplicates Read 281,000,000 records. Elapsed time: 00:09:54s. Time for last 1,000,000: 1s. Last read position: chr8:66,573,382
INFO 2026-06-08 08:56:33 MarkDuplicates Tracking 936255 as yet unmatched pairs. 34237 records in RAM.
INFO 2026-06-08 08:56:35 MarkDuplicates Read 282,000,000 records. Elapsed time: 00:09:56s. Time for last 1,000,000: 1s. Last read position: chr8:70,586,988
INFO 2026-06-08 08:56:35 MarkDuplicates Tracking 936630 as yet unmatched pairs. 34588 records in RAM.
INFO 2026-06-08 08:56:38 MarkDuplicates Read 283,000,000 records. Elapsed time: 00:09:59s. Time for last 1,000,000: 2s. Last read position: chr8:86,448,262
INFO 2026-06-08 08:56:38 MarkDuplicates Tracking 931719 as yet unmatched pairs. 29654 records in RAM.
INFO 2026-06-08 08:56:39 MarkDuplicates Read 284,000,000 records. Elapsed time: 00:10:00s. Time for last 1,000,000: 1s. Last read position: chr8:96,494,218
INFO 2026-06-08 08:56:39 MarkDuplicates Tracking 929506 as yet unmatched pairs. 27432 records in RAM.
INFO 2026-06-08 08:56:41 MarkDuplicates Read 285,000,000 records. Elapsed time: 00:10:02s. Time for last 1,000,000: 1s. Last read position: chr8:100,703,330
INFO 2026-06-08 08:56:41 MarkDuplicates Tracking 936847 as yet unmatched pairs. 34751 records in RAM.
INFO 2026-06-08 08:56:43 MarkDuplicates Read 286,000,000 records. Elapsed time: 00:10:04s. Time for last 1,000,000: 1s. Last read position: chr8:100,936,799
INFO 2026-06-08 08:56:43 MarkDuplicates Tracking 925648 as yet unmatched pairs. 23546 records in RAM.
INFO 2026-06-08 08:56:44 MarkDuplicates Read 287,000,000 records. Elapsed time: 00:10:06s. Time for last 1,000,000: 1s. Last read position: chr8:108,479,012
INFO 2026-06-08 08:56:44 MarkDuplicates Tracking 921282 as yet unmatched pairs. 19139 records in RAM.
INFO 2026-06-08 08:56:46 MarkDuplicates Read 288,000,000 records. Elapsed time: 00:10:07s. Time for last 1,000,000: 1s. Last read position: chr8:120,315,571
INFO 2026-06-08 08:56:46 MarkDuplicates Tracking 919446 as yet unmatched pairs. 17292 records in RAM.
INFO 2026-06-08 08:56:49 MarkDuplicates Read 289,000,000 records. Elapsed time: 00:10:10s. Time for last 1,000,000: 2s. Last read position: chr8:127,738,669
INFO 2026-06-08 08:56:49 MarkDuplicates Tracking 918902 as yet unmatched pairs. 16740 records in RAM.
INFO 2026-06-08 08:56:50 MarkDuplicates Read 290,000,000 records. Elapsed time: 00:10:11s. Time for last 1,000,000: 1s. Last read position: chr8:140,890,582
INFO 2026-06-08 08:56:50 MarkDuplicates Tracking 913602 as yet unmatched pairs. 11413 records in RAM.
INFO 2026-06-08 08:56:52 MarkDuplicates Read 291,000,000 records. Elapsed time: 00:10:13s. Time for last 1,000,000: 1s. Last read position: chr8:143,859,116
INFO 2026-06-08 08:56:52 MarkDuplicates Tracking 910424 as yet unmatched pairs. 8228 records in RAM.
INFO 2026-06-08 08:56:53 MarkDuplicates Read 292,000,000 records. Elapsed time: 00:10:14s. Time for last 1,000,000: 1s. Last read position: chr8:143,921,005
INFO 2026-06-08 08:56:53 MarkDuplicates Tracking 908303 as yet unmatched pairs. 6101 records in RAM.
INFO 2026-06-08 08:56:55 MarkDuplicates Read 293,000,000 records. Elapsed time: 00:10:16s. Time for last 1,000,000: 2s. Last read position: chr8:144,309,533
INFO 2026-06-08 08:56:55 MarkDuplicates Tracking 904908 as yet unmatched pairs. 2699 records in RAM.
INFO 2026-06-08 08:56:58 MarkDuplicates Read 294,000,000 records. Elapsed time: 00:10:19s. Time for last 1,000,000: 2s. Last read position: chr9:711,238
INFO 2026-06-08 08:56:58 MarkDuplicates Tracking 903353 as yet unmatched pairs. 65857 records in RAM.
INFO 2026-06-08 08:56:59 MarkDuplicates Read 295,000,000 records. Elapsed time: 00:10:20s. Time for last 1,000,000: 1s. Last read position: chr9:9,442,140
INFO 2026-06-08 08:56:59 MarkDuplicates Tracking 899112 as yet unmatched pairs. 61589 records in RAM.
INFO 2026-06-08 08:57:01 MarkDuplicates Read 296,000,000 records. Elapsed time: 00:10:23s. Time for last 1,000,000: 2s. Last read position: chr9:14,307,108
INFO 2026-06-08 08:57:01 MarkDuplicates Tracking 912287 as yet unmatched pairs. 74740 records in RAM.
INFO 2026-06-08 08:57:04 MarkDuplicates Read 297,000,000 records. Elapsed time: 00:10:25s. Time for last 1,000,000: 2s. Last read position: chr9:20,933,039
INFO 2026-06-08 08:57:04 MarkDuplicates Tracking 894426 as yet unmatched pairs. 56860 records in RAM.
INFO 2026-06-08 08:57:06 MarkDuplicates Read 298,000,000 records. Elapsed time: 00:10:27s. Time for last 1,000,000: 1s. Last read position: chr9:34,372,753
INFO 2026-06-08 08:57:06 MarkDuplicates Tracking 891892 as yet unmatched pairs. 54304 records in RAM.
INFO 2026-06-08 08:57:08 MarkDuplicates Read 299,000,000 records. Elapsed time: 00:10:29s. Time for last 1,000,000: 1s. Last read position: chr9:35,609,100
INFO 2026-06-08 08:57:08 MarkDuplicates Tracking 889983 as yet unmatched pairs. 52382 records in RAM.
INFO 2026-06-08 08:57:09 MarkDuplicates Read 300,000,000 records. Elapsed time: 00:10:30s. Time for last 1,000,000: 1s. Last read position: chr9:36,583,670
INFO 2026-06-08 08:57:09 MarkDuplicates Tracking 886409 as yet unmatched pairs. 48787 records in RAM.
INFO 2026-06-08 08:57:11 MarkDuplicates Read 301,000,000 records. Elapsed time: 00:10:32s. Time for last 1,000,000: 1s. Last read position: chr9:70,264,247
INFO 2026-06-08 08:57:11 MarkDuplicates Tracking 885120 as yet unmatched pairs. 47472 records in RAM.
INFO 2026-06-08 08:57:12 MarkDuplicates Read 302,000,000 records. Elapsed time: 00:10:34s. Time for last 1,000,000: 1s. Last read position: chr9:83,973,347
INFO 2026-06-08 08:57:12 MarkDuplicates Tracking 883536 as yet unmatched pairs. 45856 records in RAM.
INFO 2026-06-08 08:57:15 MarkDuplicates Read 303,000,000 records. Elapsed time: 00:10:36s. Time for last 1,000,000: 2s. Last read position: chr9:92,080,929
INFO 2026-06-08 08:57:15 MarkDuplicates Tracking 879486 as yet unmatched pairs. 41779 records in RAM.
INFO 2026-06-08 08:57:16 MarkDuplicates Read 304,000,000 records. Elapsed time: 00:10:37s. Time for last 1,000,000: 1s. Last read position: chr9:97,983,520
INFO 2026-06-08 08:57:16 MarkDuplicates Tracking 877037 as yet unmatched pairs. 39318 records in RAM.
INFO 2026-06-08 08:57:18 MarkDuplicates Read 305,000,000 records. Elapsed time: 00:10:39s. Time for last 1,000,000: 1s. Last read position: chr9:106,926,633
INFO 2026-06-08 08:57:18 MarkDuplicates Tracking 874001 as yet unmatched pairs. 36273 records in RAM.
INFO 2026-06-08 08:57:20 MarkDuplicates Read 306,000,000 records. Elapsed time: 00:10:41s. Time for last 1,000,000: 2s. Last read position: chr9:113,166,109
INFO 2026-06-08 08:57:20 MarkDuplicates Tracking 871643 as yet unmatched pairs. 33901 records in RAM.
INFO 2026-06-08 08:57:23 MarkDuplicates Read 307,000,000 records. Elapsed time: 00:10:44s. Time for last 1,000,000: 2s. Last read position: chr9:117,708,613
INFO 2026-06-08 08:57:23 MarkDuplicates Tracking 868523 as yet unmatched pairs. 30771 records in RAM.
INFO 2026-06-08 08:57:24 MarkDuplicates Read 308,000,000 records. Elapsed time: 00:10:46s. Time for last 1,000,000: 1s. Last read position: chr9:122,553,751
INFO 2026-06-08 08:57:24 MarkDuplicates Tracking 865855 as yet unmatched pairs. 28093 records in RAM.
INFO 2026-06-08 08:57:26 MarkDuplicates Read 309,000,000 records. Elapsed time: 00:10:47s. Time for last 1,000,000: 1s. Last read position: chr9:127,108,538
INFO 2026-06-08 08:57:26 MarkDuplicates Tracking 863418 as yet unmatched pairs. 25636 records in RAM.
INFO 2026-06-08 08:57:28 MarkDuplicates Read 310,000,000 records. Elapsed time: 00:10:49s. Time for last 1,000,000: 1s. Last read position: chr9:128,179,095
INFO 2026-06-08 08:57:28 MarkDuplicates Tracking 860622 as yet unmatched pairs. 22821 records in RAM.
INFO 2026-06-08 08:57:30 MarkDuplicates Read 311,000,000 records. Elapsed time: 00:10:51s. Time for last 1,000,000: 1s. Last read position: chr9:128,805,994
INFO 2026-06-08 08:57:30 MarkDuplicates Tracking 857333 as yet unmatched pairs. 19522 records in RAM.
INFO 2026-06-08 08:57:31 MarkDuplicates Read 312,000,000 records. Elapsed time: 00:10:52s. Time for last 1,000,000: 1s. Last read position: chr9:130,872,963
INFO 2026-06-08 08:57:31 MarkDuplicates Tracking 855459 as yet unmatched pairs. 17640 records in RAM.
INFO 2026-06-08 08:57:33 MarkDuplicates Read 313,000,000 records. Elapsed time: 00:10:54s. Time for last 1,000,000: 1s. Last read position: chr9:132,328,026
INFO 2026-06-08 08:57:33 MarkDuplicates Tracking 852228 as yet unmatched pairs. 14405 records in RAM.
INFO 2026-06-08 08:57:35 MarkDuplicates Read 314,000,000 records. Elapsed time: 00:10:56s. Time for last 1,000,000: 1s. Last read position: chr9:134,436,498
INFO 2026-06-08 08:57:35 MarkDuplicates Tracking 849191 as yet unmatched pairs. 11352 records in RAM.
INFO 2026-06-08 08:57:37 MarkDuplicates Read 315,000,000 records. Elapsed time: 00:10:58s. Time for last 1,000,000: 1s. Last read position: chr9:136,474,090
INFO 2026-06-08 08:57:37 MarkDuplicates Tracking 846933 as yet unmatched pairs. 9070 records in RAM.
INFO 2026-06-08 08:57:38 MarkDuplicates Read 316,000,000 records. Elapsed time: 00:10:59s. Time for last 1,000,000: 1s. Last read position: chr9:136,839,712
INFO 2026-06-08 08:57:38 MarkDuplicates Tracking 843299 as yet unmatched pairs. 5427 records in RAM.
INFO 2026-06-08 08:57:40 MarkDuplicates Read 317,000,000 records. Elapsed time: 00:11:01s. Time for last 1,000,000: 1s. Last read position: chr9:137,236,160
INFO 2026-06-08 08:57:40 MarkDuplicates Tracking 839733 as yet unmatched pairs. 1853 records in RAM.
INFO 2026-06-08 08:57:42 MarkDuplicates Read 318,000,000 records. Elapsed time: 00:11:03s. Time for last 1,000,000: 2s. Last read position: chr10:3,113,398
INFO 2026-06-08 08:57:42 MarkDuplicates Tracking 836913 as yet unmatched pairs. 52611 records in RAM.
INFO 2026-06-08 08:57:45 MarkDuplicates Read 319,000,000 records. Elapsed time: 00:11:06s. Time for last 1,000,000: 3s. Last read position: chr10:5,747,666
INFO 2026-06-08 08:57:45 MarkDuplicates Tracking 834455 as yet unmatched pairs. 50145 records in RAM.
INFO 2026-06-08 08:57:47 MarkDuplicates Read 320,000,000 records. Elapsed time: 00:11:08s. Time for last 1,000,000: 1s. Last read position: chr10:12,167,718
INFO 2026-06-08 08:57:47 MarkDuplicates Tracking 832414 as yet unmatched pairs. 48089 records in RAM.
INFO 2026-06-08 08:57:49 MarkDuplicates Read 321,000,000 records. Elapsed time: 00:11:10s. Time for last 1,000,000: 1s. Last read position: chr10:17,234,729
INFO 2026-06-08 08:57:49 MarkDuplicates Tracking 830109 as yet unmatched pairs. 45775 records in RAM.
INFO 2026-06-08 08:57:50 MarkDuplicates Read 322,000,000 records. Elapsed time: 00:11:12s. Time for last 1,000,000: 1s. Last read position: chr10:24,591,232
INFO 2026-06-08 08:57:50 MarkDuplicates Tracking 826563 as yet unmatched pairs. 42208 records in RAM.
INFO 2026-06-08 08:57:52 MarkDuplicates Read 323,000,000 records. Elapsed time: 00:11:13s. Time for last 1,000,000: 1s. Last read position: chr10:29,529,796
INFO 2026-06-08 08:57:52 MarkDuplicates Tracking 824614 as yet unmatched pairs. 40250 records in RAM.
INFO 2026-06-08 08:57:54 MarkDuplicates Read 324,000,000 records. Elapsed time: 00:11:15s. Time for last 1,000,000: 1s. Last read position: chr10:32,037,593
INFO 2026-06-08 08:57:54 MarkDuplicates Tracking 828794 as yet unmatched pairs. 44425 records in RAM.
INFO 2026-06-08 08:57:56 MarkDuplicates Read 325,000,000 records. Elapsed time: 00:11:17s. Time for last 1,000,000: 1s. Last read position: chr10:35,553,062
INFO 2026-06-08 08:57:56 MarkDuplicates Tracking 819095 as yet unmatched pairs. 34717 records in RAM.
INFO 2026-06-08 08:57:57 MarkDuplicates Read 326,000,000 records. Elapsed time: 00:11:19s. Time for last 1,000,000: 1s. Last read position: chr10:46,003,200
INFO 2026-06-08 08:57:57 MarkDuplicates Tracking 816672 as yet unmatched pairs. 32276 records in RAM.
INFO 2026-06-08 08:57:59 MarkDuplicates Read 327,000,000 records. Elapsed time: 00:11:20s. Time for last 1,000,000: 1s. Last read position: chr10:49,922,653
INFO 2026-06-08 08:57:59 MarkDuplicates Tracking 814254 as yet unmatched pairs. 29847 records in RAM.
INFO 2026-06-08 08:58:01 MarkDuplicates Read 328,000,000 records. Elapsed time: 00:11:22s. Time for last 1,000,000: 2s. Last read position: chr10:63,209,182
INFO 2026-06-08 08:58:01 MarkDuplicates Tracking 811973 as yet unmatched pairs. 27562 records in RAM.
INFO 2026-06-08 08:58:03 MarkDuplicates Read 329,000,000 records. Elapsed time: 00:11:24s. Time for last 1,000,000: 1s. Last read position: chr10:71,645,923
INFO 2026-06-08 08:58:03 MarkDuplicates Tracking 809003 as yet unmatched pairs. 24575 records in RAM.
INFO 2026-06-08 08:58:05 MarkDuplicates Read 330,000,000 records. Elapsed time: 00:11:27s. Time for last 1,000,000: 2s. Last read position: chr10:73,916,419
INFO 2026-06-08 08:58:05 MarkDuplicates Tracking 806270 as yet unmatched pairs. 21813 records in RAM.
INFO 2026-06-08 08:58:07 MarkDuplicates Read 331,000,000 records. Elapsed time: 00:11:28s. Time for last 1,000,000: 1s. Last read position: chr10:80,157,743
INFO 2026-06-08 08:58:07 MarkDuplicates Tracking 804099 as yet unmatched pairs. 19625 records in RAM.
INFO 2026-06-08 08:58:09 MarkDuplicates Read 332,000,000 records. Elapsed time: 00:11:30s. Time for last 1,000,000: 1s. Last read position: chr10:88,941,810
INFO 2026-06-08 08:58:09 MarkDuplicates Tracking 802136 as yet unmatched pairs. 17655 records in RAM.
INFO 2026-06-08 08:58:11 MarkDuplicates Read 333,000,000 records. Elapsed time: 00:11:32s. Time for last 1,000,000: 1s. Last read position: chr10:95,434,666
INFO 2026-06-08 08:58:11 MarkDuplicates Tracking 798946 as yet unmatched pairs. 14453 records in RAM.
INFO 2026-06-08 08:58:12 MarkDuplicates Read 334,000,000 records. Elapsed time: 00:11:33s. Time for last 1,000,000: 1s. Last read position: chr10:100,354,606
INFO 2026-06-08 08:58:12 MarkDuplicates Tracking 796722 as yet unmatched pairs. 12211 records in RAM.
INFO 2026-06-08 08:58:14 MarkDuplicates Read 335,000,000 records. Elapsed time: 00:11:35s. Time for last 1,000,000: 1s. Last read position: chr10:102,813,153
INFO 2026-06-08 08:58:14 MarkDuplicates Tracking 793891 as yet unmatched pairs. 9359 records in RAM.
INFO 2026-06-08 08:58:16 MarkDuplicates Read 336,000,000 records. Elapsed time: 00:11:37s. Time for last 1,000,000: 1s. Last read position: chr10:114,444,119
INFO 2026-06-08 08:58:16 MarkDuplicates Tracking 790979 as yet unmatched pairs. 6428 records in RAM.
INFO 2026-06-08 08:58:18 MarkDuplicates Read 337,000,000 records. Elapsed time: 00:11:39s. Time for last 1,000,000: 1s. Last read position: chr10:122,086,793
INFO 2026-06-08 08:58:18 MarkDuplicates Tracking 788352 as yet unmatched pairs. 3792 records in RAM.
INFO 2026-06-08 08:58:19 MarkDuplicates Read 338,000,000 records. Elapsed time: 00:11:40s. Time for last 1,000,000: 1s. Last read position: chr10:130,166,563
INFO 2026-06-08 08:58:19 MarkDuplicates Tracking 785788 as yet unmatched pairs. 1207 records in RAM.
INFO 2026-06-08 08:58:22 MarkDuplicates Read 339,000,000 records. Elapsed time: 00:11:43s. Time for last 1,000,000: 2s. Last read position: chr11:606,387
INFO 2026-06-08 08:58:22 MarkDuplicates Tracking 782870 as yet unmatched pairs. 89655 records in RAM.
INFO 2026-06-08 08:58:23 MarkDuplicates Read 340,000,000 records. Elapsed time: 00:11:45s. Time for last 1,000,000: 1s. Last read position: chr11:1,244,114
INFO 2026-06-08 08:58:23 MarkDuplicates Tracking 780132 as yet unmatched pairs. 86914 records in RAM.
INFO 2026-06-08 08:58:25 MarkDuplicates Read 341,000,000 records. Elapsed time: 00:11:46s. Time for last 1,000,000: 1s. Last read position: chr11:1,759,027
INFO 2026-06-08 08:58:25 MarkDuplicates Tracking 780822 as yet unmatched pairs. 87603 records in RAM.
INFO 2026-06-08 08:58:29 MarkDuplicates Read 342,000,000 records. Elapsed time: 00:11:51s. Time for last 1,000,000: 4s. Last read position: chr11:3,856,237
INFO 2026-06-08 08:58:29 MarkDuplicates Tracking 775118 as yet unmatched pairs. 81887 records in RAM.
INFO 2026-06-08 08:58:32 MarkDuplicates Read 343,000,000 records. Elapsed time: 00:11:53s. Time for last 1,000,000: 2s. Last read position: chr11:8,684,778
INFO 2026-06-08 08:58:32 MarkDuplicates Tracking 773678 as yet unmatched pairs. 80434 records in RAM.
INFO 2026-06-08 08:58:33 MarkDuplicates Read 344,000,000 records. Elapsed time: 00:11:55s. Time for last 1,000,000: 1s. Last read position: chr11:12,504,368
INFO 2026-06-08 08:58:33 MarkDuplicates Tracking 769728 as yet unmatched pairs. 76471 records in RAM.
INFO 2026-06-08 08:58:35 MarkDuplicates Read 345,000,000 records. Elapsed time: 00:11:56s. Time for last 1,000,000: 1s. Last read position: chr11:20,367,250
INFO 2026-06-08 08:58:35 MarkDuplicates Tracking 767276 as yet unmatched pairs. 74007 records in RAM.
INFO 2026-06-08 08:58:37 MarkDuplicates Read 346,000,000 records. Elapsed time: 00:11:58s. Time for last 1,000,000: 1s. Last read position: chr11:34,632,546
INFO 2026-06-08 08:58:37 MarkDuplicates Tracking 766473 as yet unmatched pairs. 73191 records in RAM.
INFO 2026-06-08 08:58:39 MarkDuplicates Read 347,000,000 records. Elapsed time: 00:12:00s. Time for last 1,000,000: 1s. Last read position: chr11:46,317,474
INFO 2026-06-08 08:58:39 MarkDuplicates Tracking 762534 as yet unmatched pairs. 69230 records in RAM.
INFO 2026-06-08 08:58:40 MarkDuplicates Read 348,000,000 records. Elapsed time: 00:12:02s. Time for last 1,000,000: 1s. Last read position: chr11:47,465,974
INFO 2026-06-08 08:58:40 MarkDuplicates Tracking 758971 as yet unmatched pairs. 65661 records in RAM.
INFO 2026-06-08 08:58:42 MarkDuplicates Read 349,000,000 records. Elapsed time: 00:12:03s. Time for last 1,000,000: 1s. Last read position: chr11:57,606,407
INFO 2026-06-08 08:58:42 MarkDuplicates Tracking 758262 as yet unmatched pairs. 64944 records in RAM.
INFO 2026-06-08 08:58:44 MarkDuplicates Read 350,000,000 records. Elapsed time: 00:12:05s. Time for last 1,000,000: 1s. Last read position: chr11:60,179,940
INFO 2026-06-08 08:58:44 MarkDuplicates Tracking 754583 as yet unmatched pairs. 61250 records in RAM.
INFO 2026-06-08 08:58:46 MarkDuplicates Read 351,000,000 records. Elapsed time: 00:12:07s. Time for last 1,000,000: 1s. Last read position: chr11:61,863,706
INFO 2026-06-08 08:58:46 MarkDuplicates Tracking 751244 as yet unmatched pairs. 57905 records in RAM.
INFO 2026-06-08 08:58:48 MarkDuplicates Read 352,000,000 records. Elapsed time: 00:12:09s. Time for last 1,000,000: 2s. Last read position: chr11:62,521,280
INFO 2026-06-08 08:58:48 MarkDuplicates Tracking 750117 as yet unmatched pairs. 56773 records in RAM.
INFO 2026-06-08 08:58:51 MarkDuplicates Read 353,000,000 records. Elapsed time: 00:12:12s. Time for last 1,000,000: 2s. Last read position: chr11:62,530,453
INFO 2026-06-08 08:58:51 MarkDuplicates Tracking 747796 as yet unmatched pairs. 54450 records in RAM.
INFO 2026-06-08 08:58:52 MarkDuplicates Read 354,000,000 records. Elapsed time: 00:12:14s. Time for last 1,000,000: 1s. Last read position: chr11:62,669,778
INFO 2026-06-08 08:58:52 MarkDuplicates Tracking 743867 as yet unmatched pairs. 50503 records in RAM.
INFO 2026-06-08 08:58:54 MarkDuplicates Read 355,000,000 records. Elapsed time: 00:12:15s. Time for last 1,000,000: 1s. Last read position: chr11:63,997,076
INFO 2026-06-08 08:58:54 MarkDuplicates Tracking 741318 as yet unmatched pairs. 47942 records in RAM.
INFO 2026-06-08 08:58:56 MarkDuplicates Read 356,000,000 records. Elapsed time: 00:12:17s. Time for last 1,000,000: 1s. Last read position: chr11:64,860,113
INFO 2026-06-08 08:58:56 MarkDuplicates Tracking 738320 as yet unmatched pairs. 44942 records in RAM.
INFO 2026-06-08 08:58:58 MarkDuplicates Read 357,000,000 records. Elapsed time: 00:12:19s. Time for last 1,000,000: 1s. Last read position: chr11:65,547,942
INFO 2026-06-08 08:58:58 MarkDuplicates Tracking 735459 as yet unmatched pairs. 42052 records in RAM.
INFO 2026-06-08 08:58:59 MarkDuplicates Read 358,000,000 records. Elapsed time: 00:12:21s. Time for last 1,000,000: 1s. Last read position: chr11:65,855,976
INFO 2026-06-08 08:58:59 MarkDuplicates Tracking 733200 as yet unmatched pairs. 39792 records in RAM.
INFO 2026-06-08 08:59:01 MarkDuplicates Read 359,000,000 records. Elapsed time: 00:12:22s. Time for last 1,000,000: 1s. Last read position: chr11:66,568,428
INFO 2026-06-08 08:59:01 MarkDuplicates Tracking 728586 as yet unmatched pairs. 35175 records in RAM.
INFO 2026-06-08 08:59:05 MarkDuplicates Read 360,000,000 records. Elapsed time: 00:12:26s. Time for last 1,000,000: 3s. Last read position: chr11:67,442,423
INFO 2026-06-08 08:59:05 MarkDuplicates Tracking 726166 as yet unmatched pairs. 32713 records in RAM.
INFO 2026-06-08 08:59:06 MarkDuplicates Read 361,000,000 records. Elapsed time: 00:12:27s. Time for last 1,000,000: 1s. Last read position: chr11:70,170,895
INFO 2026-06-08 08:59:06 MarkDuplicates Tracking 722772 as yet unmatched pairs. 29316 records in RAM.
INFO 2026-06-08 08:59:08 MarkDuplicates Read 362,000,000 records. Elapsed time: 00:12:29s. Time for last 1,000,000: 1s. Last read position: chr11:72,230,796
INFO 2026-06-08 08:59:08 MarkDuplicates Tracking 719970 as yet unmatched pairs. 26495 records in RAM.
INFO 2026-06-08 08:59:10 MarkDuplicates Read 363,000,000 records. Elapsed time: 00:12:31s. Time for last 1,000,000: 1s. Last read position: chr11:74,965,816
INFO 2026-06-08 08:59:10 MarkDuplicates Tracking 718189 as yet unmatched pairs. 24703 records in RAM.
INFO 2026-06-08 08:59:12 MarkDuplicates Read 364,000,000 records. Elapsed time: 00:12:33s. Time for last 1,000,000: 1s. Last read position: chr11:78,223,501
INFO 2026-06-08 08:59:12 MarkDuplicates Tracking 714575 as yet unmatched pairs. 21078 records in RAM.
INFO 2026-06-08 08:59:13 MarkDuplicates Read 365,000,000 records. Elapsed time: 00:12:34s. Time for last 1,000,000: 1s. Last read position: chr11:94,800,134
INFO 2026-06-08 08:59:13 MarkDuplicates Tracking 711782 as yet unmatched pairs. 18277 records in RAM.
INFO 2026-06-08 08:59:15 MarkDuplicates Read 366,000,000 records. Elapsed time: 00:12:36s. Time for last 1,000,000: 1s. Last read position: chr11:103,135,508
INFO 2026-06-08 08:59:15 MarkDuplicates Tracking 709030 as yet unmatched pairs. 15495 records in RAM.
INFO 2026-06-08 08:59:17 MarkDuplicates Read 367,000,000 records. Elapsed time: 00:12:38s. Time for last 1,000,000: 2s. Last read position: chr11:112,059,888
INFO 2026-06-08 08:59:17 MarkDuplicates Tracking 706814 as yet unmatched pairs. 13270 records in RAM.
INFO 2026-06-08 08:59:20 MarkDuplicates Read 368,000,000 records. Elapsed time: 00:12:41s. Time for last 1,000,000: 2s. Last read position: chr11:118,262,928
INFO 2026-06-08 08:59:20 MarkDuplicates Tracking 704044 as yet unmatched pairs. 10485 records in RAM.
INFO 2026-06-08 08:59:21 MarkDuplicates Read 369,000,000 records. Elapsed time: 00:12:42s. Time for last 1,000,000: 1s. Last read position: chr11:118,903,356
INFO 2026-06-08 08:59:21 MarkDuplicates Tracking 701585 as yet unmatched pairs. 8010 records in RAM.
INFO 2026-06-08 08:59:23 MarkDuplicates Read 370,000,000 records. Elapsed time: 00:12:44s. Time for last 1,000,000: 1s. Last read position: chr11:122,796,909
INFO 2026-06-08 08:59:23 MarkDuplicates Tracking 698735 as yet unmatched pairs. 5146 records in RAM.
INFO 2026-06-08 08:59:25 MarkDuplicates Read 371,000,000 records. Elapsed time: 00:12:46s. Time for last 1,000,000: 1s. Last read position: chr11:128,484,844
INFO 2026-06-08 08:59:25 MarkDuplicates Tracking 697153 as yet unmatched pairs. 3554 records in RAM.
INFO 2026-06-08 08:59:27 MarkDuplicates Read 372,000,000 records. Elapsed time: 00:12:48s. Time for last 1,000,000: 2s. Last read position: chr12:323,131
INFO 2026-06-08 08:59:27 MarkDuplicates Tracking 693711 as yet unmatched pairs. 82889 records in RAM.
INFO 2026-06-08 08:59:29 MarkDuplicates Read 373,000,000 records. Elapsed time: 00:12:50s. Time for last 1,000,000: 1s. Last read position: chr12:4,300,496
INFO 2026-06-08 08:59:29 MarkDuplicates Tracking 690853 as yet unmatched pairs. 80007 records in RAM.
INFO 2026-06-08 08:59:31 MarkDuplicates Read 374,000,000 records. Elapsed time: 00:12:52s. Time for last 1,000,000: 1s. Last read position: chr12:6,536,966
INFO 2026-06-08 08:59:31 MarkDuplicates Tracking 688997 as yet unmatched pairs. 78146 records in RAM.
INFO 2026-06-08 08:59:33 MarkDuplicates Read 375,000,000 records. Elapsed time: 00:12:54s. Time for last 1,000,000: 1s. Last read position: chr12:6,945,820
INFO 2026-06-08 08:59:33 MarkDuplicates Tracking 686795 as yet unmatched pairs. 75929 records in RAM.
INFO 2026-06-08 08:59:34 MarkDuplicates Read 376,000,000 records. Elapsed time: 00:12:55s. Time for last 1,000,000: 1s. Last read position: chr12:8,059,811
INFO 2026-06-08 08:59:34 MarkDuplicates Tracking 682788 as yet unmatched pairs. 71915 records in RAM.
INFO 2026-06-08 08:59:36 MarkDuplicates Read 377,000,000 records. Elapsed time: 00:12:57s. Time for last 1,000,000: 1s. Last read position: chr12:11,649,958
INFO 2026-06-08 08:59:36 MarkDuplicates Tracking 681126 as yet unmatched pairs. 70243 records in RAM.
INFO 2026-06-08 08:59:38 MarkDuplicates Read 378,000,000 records. Elapsed time: 00:12:59s. Time for last 1,000,000: 2s. Last read position: chr12:14,882,213
INFO 2026-06-08 08:59:38 MarkDuplicates Tracking 699222 as yet unmatched pairs. 88324 records in RAM.
INFO 2026-06-08 08:59:41 MarkDuplicates Read 379,000,000 records. Elapsed time: 00:13:02s. Time for last 1,000,000: 2s. Last read position: chr12:21,293,956
INFO 2026-06-08 08:59:41 MarkDuplicates Tracking 675249 as yet unmatched pairs. 64335 records in RAM.
INFO 2026-06-08 08:59:43 MarkDuplicates Read 380,000,000 records. Elapsed time: 00:13:04s. Time for last 1,000,000: 1s. Last read position: chr12:30,639,600
INFO 2026-06-08 08:59:43 MarkDuplicates Tracking 672873 as yet unmatched pairs. 61943 records in RAM.
INFO 2026-06-08 08:59:45 MarkDuplicates Read 381,000,000 records. Elapsed time: 00:13:06s. Time for last 1,000,000: 1s. Last read position: chr12:45,851,220
INFO 2026-06-08 08:59:45 MarkDuplicates Tracking 670678 as yet unmatched pairs. 59743 records in RAM.
INFO 2026-06-08 08:59:46 MarkDuplicates Read 382,000,000 records. Elapsed time: 00:13:08s. Time for last 1,000,000: 1s. Last read position: chr12:48,840,045
INFO 2026-06-08 08:59:46 MarkDuplicates Tracking 667612 as yet unmatched pairs. 56666 records in RAM.
INFO 2026-06-08 08:59:48 MarkDuplicates Read 383,000,000 records. Elapsed time: 00:13:09s. Time for last 1,000,000: 1s. Last read position: chr12:49,128,272
INFO 2026-06-08 08:59:48 MarkDuplicates Tracking 669683 as yet unmatched pairs. 58733 records in RAM.
INFO 2026-06-08 08:59:50 MarkDuplicates Read 384,000,000 records. Elapsed time: 00:13:11s. Time for last 1,000,000: 1s. Last read position: chr12:49,563,438
INFO 2026-06-08 08:59:50 MarkDuplicates Tracking 663254 as yet unmatched pairs. 52304 records in RAM.
INFO 2026-06-08 08:59:52 MarkDuplicates Read 385,000,000 records. Elapsed time: 00:13:13s. Time for last 1,000,000: 1s. Last read position: chr12:50,925,192
INFO 2026-06-08 08:59:52 MarkDuplicates Tracking 663197 as yet unmatched pairs. 52237 records in RAM.
INFO 2026-06-08 08:59:53 MarkDuplicates Read 386,000,000 records. Elapsed time: 00:13:14s. Time for last 1,000,000: 1s. Last read position: chr12:52,473,430
INFO 2026-06-08 08:59:53 MarkDuplicates Tracking 657661 as yet unmatched pairs. 46691 records in RAM.
INFO 2026-06-08 08:59:55 MarkDuplicates Read 387,000,000 records. Elapsed time: 00:13:16s. Time for last 1,000,000: 1s. Last read position: chr12:53,517,097
INFO 2026-06-08 08:59:55 MarkDuplicates Tracking 655466 as yet unmatched pairs. 44489 records in RAM.
INFO 2026-06-08 08:59:57 MarkDuplicates Read 388,000,000 records. Elapsed time: 00:13:19s. Time for last 1,000,000: 2s. Last read position: chr12:55,698,458
INFO 2026-06-08 08:59:57 MarkDuplicates Tracking 652650 as yet unmatched pairs. 41663 records in RAM.
INFO 2026-06-08 09:00:00 MarkDuplicates Read 389,000,000 records. Elapsed time: 00:13:21s. Time for last 1,000,000: 2s. Last read position: chr12:56,161,446
INFO 2026-06-08 09:00:00 MarkDuplicates Tracking 650022 as yet unmatched pairs. 39014 records in RAM.
INFO 2026-06-08 09:00:02 MarkDuplicates Read 390,000,000 records. Elapsed time: 00:13:23s. Time for last 1,000,000: 1s. Last read position: chr12:56,720,989
INFO 2026-06-08 09:00:02 MarkDuplicates Tracking 648078 as yet unmatched pairs. 37070 records in RAM.
INFO 2026-06-08 09:00:03 MarkDuplicates Read 391,000,000 records. Elapsed time: 00:13:25s. Time for last 1,000,000: 1s. Last read position: chr12:57,183,804
INFO 2026-06-08 09:00:03 MarkDuplicates Tracking 645572 as yet unmatched pairs. 34555 records in RAM.
INFO 2026-06-08 09:00:05 MarkDuplicates Read 392,000,000 records. Elapsed time: 00:13:26s. Time for last 1,000,000: 1s. Last read position: chr12:57,718,357
INFO 2026-06-08 09:00:05 MarkDuplicates Tracking 643145 as yet unmatched pairs. 32121 records in RAM.
INFO 2026-06-08 09:00:07 MarkDuplicates Read 393,000,000 records. Elapsed time: 00:13:28s. Time for last 1,000,000: 1s. Last read position: chr12:67,649,839
INFO 2026-06-08 09:00:07 MarkDuplicates Tracking 640451 as yet unmatched pairs. 29411 records in RAM.
INFO 2026-06-08 09:00:08 MarkDuplicates Read 394,000,000 records. Elapsed time: 00:13:30s. Time for last 1,000,000: 1s. Last read position: chr12:76,067,379
INFO 2026-06-08 09:00:08 MarkDuplicates Tracking 640265 as yet unmatched pairs. 29212 records in RAM.
INFO 2026-06-08 09:00:10 MarkDuplicates Read 395,000,000 records. Elapsed time: 00:13:31s. Time for last 1,000,000: 1s. Last read position: chr12:94,149,153
INFO 2026-06-08 09:00:10 MarkDuplicates Tracking 635023 as yet unmatched pairs. 23955 records in RAM.
INFO 2026-06-08 09:00:12 MarkDuplicates Read 396,000,000 records. Elapsed time: 00:13:33s. Time for last 1,000,000: 1s. Last read position: chr12:101,401,096
INFO 2026-06-08 09:00:12 MarkDuplicates Tracking 632347 as yet unmatched pairs. 21266 records in RAM.
INFO 2026-06-08 09:00:14 MarkDuplicates Read 397,000,000 records. Elapsed time: 00:13:35s. Time for last 1,000,000: 1s. Last read position: chr12:106,240,241
INFO 2026-06-08 09:00:14 MarkDuplicates Tracking 630141 as yet unmatched pairs. 19046 records in RAM.
INFO 2026-06-08 09:00:15 MarkDuplicates Read 398,000,000 records. Elapsed time: 00:13:37s. Time for last 1,000,000: 1s. Last read position: chr12:110,445,452
INFO 2026-06-08 09:00:15 MarkDuplicates Tracking 627556 as yet unmatched pairs. 16452 records in RAM.
INFO 2026-06-08 09:00:17 MarkDuplicates Read 399,000,000 records. Elapsed time: 00:13:38s. Time for last 1,000,000: 1s. Last read position: chr12:112,964,234
INFO 2026-06-08 09:00:17 MarkDuplicates Tracking 624615 as yet unmatched pairs. 13498 records in RAM.
INFO 2026-06-08 09:00:19 MarkDuplicates Read 400,000,000 records. Elapsed time: 00:13:40s. Time for last 1,000,000: 2s. Last read position: chr12:120,163,073
INFO 2026-06-08 09:00:19 MarkDuplicates Tracking 622261 as yet unmatched pairs. 11131 records in RAM.
INFO 2026-06-08 09:00:21 MarkDuplicates Read 401,000,000 records. Elapsed time: 00:13:43s. Time for last 1,000,000: 2s. Last read position: chr12:122,135,574
INFO 2026-06-08 09:00:21 MarkDuplicates Tracking 619661 as yet unmatched pairs. 8521 records in RAM.
INFO 2026-06-08 09:00:23 MarkDuplicates Read 402,000,000 records. Elapsed time: 00:13:44s. Time for last 1,000,000: 1s. Last read position: chr12:123,586,772
INFO 2026-06-08 09:00:23 MarkDuplicates Tracking 618118 as yet unmatched pairs. 6978 records in RAM.
INFO 2026-06-08 09:00:25 MarkDuplicates Read 403,000,000 records. Elapsed time: 00:13:46s. Time for last 1,000,000: 1s. Last read position: chr12:131,929,513
INFO 2026-06-08 09:00:25 MarkDuplicates Tracking 613480 as yet unmatched pairs. 2335 records in RAM.
INFO 2026-06-08 09:00:27 MarkDuplicates Read 404,000,000 records. Elapsed time: 00:13:48s. Time for last 1,000,000: 2s. Last read position: chr13:20,034,327
INFO 2026-06-08 09:00:27 MarkDuplicates Tracking 611731 as yet unmatched pairs. 21658 records in RAM.
INFO 2026-06-08 09:00:29 MarkDuplicates Read 405,000,000 records. Elapsed time: 00:13:50s. Time for last 1,000,000: 1s. Last read position: chr13:28,431,247
INFO 2026-06-08 09:00:29 MarkDuplicates Tracking 608313 as yet unmatched pairs. 18230 records in RAM.
INFO 2026-06-08 09:00:30 MarkDuplicates Read 406,000,000 records. Elapsed time: 00:13:52s. Time for last 1,000,000: 1s. Last read position: chr13:37,592,144
INFO 2026-06-08 09:00:30 MarkDuplicates Tracking 606747 as yet unmatched pairs. 16655 records in RAM.
INFO 2026-06-08 09:00:32 MarkDuplicates Read 407,000,000 records. Elapsed time: 00:13:53s. Time for last 1,000,000: 1s. Last read position: chr13:45,969,477
INFO 2026-06-08 09:00:32 MarkDuplicates Tracking 602938 as yet unmatched pairs. 12840 records in RAM.
INFO 2026-06-08 09:00:35 MarkDuplicates Read 408,000,000 records. Elapsed time: 00:13:56s. Time for last 1,000,000: 2s. Last read position: chr13:54,408,878
INFO 2026-06-08 09:00:35 MarkDuplicates Tracking 600384 as yet unmatched pairs. 10281 records in RAM.
INFO 2026-06-08 09:00:37 MarkDuplicates Read 409,000,000 records. Elapsed time: 00:13:58s. Time for last 1,000,000: 2s. Last read position: chr13:97,993,115
INFO 2026-06-08 09:00:37 MarkDuplicates Tracking 598608 as yet unmatched pairs. 8486 records in RAM.
INFO 2026-06-08 09:00:39 MarkDuplicates Read 410,000,000 records. Elapsed time: 00:14:00s. Time for last 1,000,000: 1s. Last read position: chr13:108,209,571
INFO 2026-06-08 09:00:39 MarkDuplicates Tracking 595271 as yet unmatched pairs. 5137 records in RAM.
INFO 2026-06-08 09:00:41 MarkDuplicates Read 411,000,000 records. Elapsed time: 00:14:02s. Time for last 1,000,000: 1s. Last read position: chr13:112,519,987
INFO 2026-06-08 09:00:41 MarkDuplicates Tracking 592247 as yet unmatched pairs. 2102 records in RAM.
INFO 2026-06-08 09:00:44 MarkDuplicates Read 412,000,000 records. Elapsed time: 00:14:05s. Time for last 1,000,000: 3s. Last read position: chr14:20,801,544
INFO 2026-06-08 09:00:44 MarkDuplicates Tracking 595468 as yet unmatched pairs. 51997 records in RAM.
INFO 2026-06-08 09:00:46 MarkDuplicates Read 413,000,000 records. Elapsed time: 00:14:07s. Time for last 1,000,000: 1s. Last read position: chr14:22,807,109
INFO 2026-06-08 09:00:46 MarkDuplicates Tracking 587064 as yet unmatched pairs. 43583 records in RAM.
INFO 2026-06-08 09:00:47 MarkDuplicates Read 414,000,000 records. Elapsed time: 00:14:09s. Time for last 1,000,000: 1s. Last read position: chr14:24,151,855
INFO 2026-06-08 09:00:47 MarkDuplicates Tracking 584228 as yet unmatched pairs. 40741 records in RAM.
INFO 2026-06-08 09:00:50 MarkDuplicates Read 415,000,000 records. Elapsed time: 00:14:11s. Time for last 1,000,000: 2s. Last read position: chr14:32,092,518
INFO 2026-06-08 09:00:50 MarkDuplicates Tracking 582348 as yet unmatched pairs. 38843 records in RAM.
INFO 2026-06-08 09:00:52 MarkDuplicates Read 416,000,000 records. Elapsed time: 00:14:13s. Time for last 1,000,000: 1s. Last read position: chr14:49,586,658
INFO 2026-06-08 09:00:52 MarkDuplicates Tracking 581760 as yet unmatched pairs. 38230 records in RAM.
INFO 2026-06-08 09:00:53 MarkDuplicates Read 417,000,000 records. Elapsed time: 00:14:14s. Time for last 1,000,000: 1s. Last read position: chr14:54,479,849
INFO 2026-06-08 09:00:53 MarkDuplicates Tracking 577047 as yet unmatched pairs. 33473 records in RAM.
INFO 2026-06-08 09:00:55 MarkDuplicates Read 418,000,000 records. Elapsed time: 00:14:16s. Time for last 1,000,000: 1s. Last read position: chr14:61,745,767
INFO 2026-06-08 09:00:55 MarkDuplicates Tracking 574278 as yet unmatched pairs. 30687 records in RAM.
INFO 2026-06-08 09:00:57 MarkDuplicates Read 419,000,000 records. Elapsed time: 00:14:18s. Time for last 1,000,000: 1s. Last read position: chr14:67,781,423
INFO 2026-06-08 09:00:57 MarkDuplicates Tracking 571977 as yet unmatched pairs. 28380 records in RAM.
INFO 2026-06-08 09:00:59 MarkDuplicates Read 420,000,000 records. Elapsed time: 00:14:20s. Time for last 1,000,000: 1s. Last read position: chr14:71,733,677
INFO 2026-06-08 09:00:59 MarkDuplicates Tracking 568817 as yet unmatched pairs. 25201 records in RAM.
INFO 2026-06-08 09:01:00 MarkDuplicates Read 421,000,000 records. Elapsed time: 00:14:21s. Time for last 1,000,000: 1s. Last read position: chr14:74,781,662
INFO 2026-06-08 09:01:00 MarkDuplicates Tracking 566442 as yet unmatched pairs. 22816 records in RAM.
INFO 2026-06-08 09:01:02 MarkDuplicates Read 422,000,000 records. Elapsed time: 00:14:23s. Time for last 1,000,000: 1s. Last read position: chr14:81,502,696
INFO 2026-06-08 09:01:02 MarkDuplicates Tracking 563445 as yet unmatched pairs. 19813 records in RAM.
INFO 2026-06-08 09:01:04 MarkDuplicates Read 423,000,000 records. Elapsed time: 00:14:25s. Time for last 1,000,000: 1s. Last read position: chr14:92,718,793
INFO 2026-06-08 09:01:04 MarkDuplicates Tracking 561792 as yet unmatched pairs. 18143 records in RAM.
INFO 2026-06-08 09:01:05 MarkDuplicates Read 424,000,000 records. Elapsed time: 00:14:27s. Time for last 1,000,000: 1s. Last read position: chr14:99,492,799
INFO 2026-06-08 09:01:05 MarkDuplicates Tracking 558293 as yet unmatched pairs. 14639 records in RAM.
INFO 2026-06-08 09:01:07 MarkDuplicates Read 425,000,000 records. Elapsed time: 00:14:28s. Time for last 1,000,000: 1s. Last read position: chr14:102,032,421
INFO 2026-06-08 09:01:07 MarkDuplicates Tracking 555848 as yet unmatched pairs. 12193 records in RAM.
INFO 2026-06-08 09:01:09 MarkDuplicates Read 426,000,000 records. Elapsed time: 00:14:30s. Time for last 1,000,000: 2s. Last read position: chr14:103,133,408
INFO 2026-06-08 09:01:09 MarkDuplicates Tracking 552906 as yet unmatched pairs. 9244 records in RAM.
INFO 2026-06-08 09:01:11 MarkDuplicates Read 427,000,000 records. Elapsed time: 00:14:32s. Time for last 1,000,000: 1s. Last read position: chr14:104,938,094
INFO 2026-06-08 09:01:11 MarkDuplicates Tracking 549499 as yet unmatched pairs. 5830 records in RAM.
INFO 2026-06-08 09:01:12 MarkDuplicates Read 428,000,000 records. Elapsed time: 00:14:33s. Time for last 1,000,000: 1s. Last read position: chr14:105,625,856
INFO 2026-06-08 09:01:12 MarkDuplicates Tracking 547332 as yet unmatched pairs. 3660 records in RAM.
INFO 2026-06-08 09:01:14 MarkDuplicates Read 429,000,000 records. Elapsed time: 00:14:35s. Time for last 1,000,000: 1s. Last read position: chr14:105,742,161
INFO 2026-06-08 09:01:14 MarkDuplicates Tracking 549383 as yet unmatched pairs. 5709 records in RAM.
INFO 2026-06-08 09:01:16 MarkDuplicates Read 430,000,000 records. Elapsed time: 00:14:37s. Time for last 1,000,000: 2s. Last read position: chr15:22,933,851
INFO 2026-06-08 09:01:16 MarkDuplicates Tracking 543635 as yet unmatched pairs. 44806 records in RAM.
INFO 2026-06-08 09:01:17 MarkDuplicates Read 431,000,000 records. Elapsed time: 00:14:39s. Time for last 1,000,000: 1s. Last read position: chr15:30,561,776
INFO 2026-06-08 09:01:17 MarkDuplicates Tracking 540659 as yet unmatched pairs. 41822 records in RAM.
INFO 2026-06-08 09:01:19 MarkDuplicates Read 432,000,000 records. Elapsed time: 00:14:40s. Time for last 1,000,000: 1s. Last read position: chr15:39,583,643
INFO 2026-06-08 09:01:19 MarkDuplicates Tracking 538924 as yet unmatched pairs. 40084 records in RAM.
INFO 2026-06-08 09:01:21 MarkDuplicates Read 433,000,000 records. Elapsed time: 00:14:42s. Time for last 1,000,000: 1s. Last read position: chr15:41,059,912
INFO 2026-06-08 09:01:21 MarkDuplicates Tracking 535847 as yet unmatched pairs. 37007 records in RAM.
INFO 2026-06-08 09:01:22 MarkDuplicates Read 434,000,000 records. Elapsed time: 00:14:44s. Time for last 1,000,000: 1s. Last read position: chr15:41,815,622
INFO 2026-06-08 09:01:22 MarkDuplicates Tracking 533187 as yet unmatched pairs. 34347 records in RAM.
INFO 2026-06-08 09:01:24 MarkDuplicates Read 435,000,000 records. Elapsed time: 00:14:45s. Time for last 1,000,000: 1s. Last read position: chr15:43,793,666
INFO 2026-06-08 09:01:24 MarkDuplicates Tracking 534435 as yet unmatched pairs. 35587 records in RAM.
INFO 2026-06-08 09:01:26 MarkDuplicates Read 436,000,000 records. Elapsed time: 00:14:47s. Time for last 1,000,000: 1s. Last read position: chr15:48,855,953
INFO 2026-06-08 09:01:26 MarkDuplicates Tracking 527890 as yet unmatched pairs. 29037 records in RAM.
INFO 2026-06-08 09:01:28 MarkDuplicates Read 437,000,000 records. Elapsed time: 00:14:49s. Time for last 1,000,000: 1s. Last read position: chr15:57,234,098
INFO 2026-06-08 09:01:28 MarkDuplicates Tracking 526883 as yet unmatched pairs. 28018 records in RAM.
INFO 2026-06-08 09:01:29 MarkDuplicates Read 438,000,000 records. Elapsed time: 00:14:51s. Time for last 1,000,000: 1s. Last read position: chr15:63,059,636
INFO 2026-06-08 09:01:29 MarkDuplicates Tracking 523187 as yet unmatched pairs. 24312 records in RAM.
INFO 2026-06-08 09:01:31 MarkDuplicates Read 439,000,000 records. Elapsed time: 00:14:52s. Time for last 1,000,000: 1s. Last read position: chr15:65,201,934
INFO 2026-06-08 09:01:31 MarkDuplicates Tracking 520104 as yet unmatched pairs. 21222 records in RAM.
INFO 2026-06-08 09:01:33 MarkDuplicates Read 440,000,000 records. Elapsed time: 00:14:54s. Time for last 1,000,000: 1s. Last read position: chr15:70,679,650
INFO 2026-06-08 09:01:33 MarkDuplicates Tracking 518011 as yet unmatched pairs. 19124 records in RAM.
INFO 2026-06-08 09:01:36 MarkDuplicates Read 441,000,000 records. Elapsed time: 00:14:57s. Time for last 1,000,000: 3s. Last read position: chr15:74,033,292
INFO 2026-06-08 09:01:36 MarkDuplicates Tracking 516277 as yet unmatched pairs. 17386 records in RAM.
INFO 2026-06-08 09:01:38 MarkDuplicates Read 442,000,000 records. Elapsed time: 00:14:59s. Time for last 1,000,000: 1s. Last read position: chr15:75,677,775
INFO 2026-06-08 09:01:38 MarkDuplicates Tracking 511795 as yet unmatched pairs. 12901 records in RAM.
INFO 2026-06-08 09:01:40 MarkDuplicates Read 443,000,000 records. Elapsed time: 00:15:01s. Time for last 1,000,000: 1s. Last read position: chr15:81,002,751
INFO 2026-06-08 09:01:40 MarkDuplicates Tracking 509218 as yet unmatched pairs. 10318 records in RAM.
INFO 2026-06-08 09:01:41 MarkDuplicates Read 444,000,000 records. Elapsed time: 00:15:03s. Time for last 1,000,000: 1s. Last read position: chr15:87,933,029
INFO 2026-06-08 09:01:41 MarkDuplicates Tracking 506990 as yet unmatched pairs. 8084 records in RAM.
INFO 2026-06-08 09:01:43 MarkDuplicates Read 445,000,000 records. Elapsed time: 00:15:04s. Time for last 1,000,000: 1s. Last read position: chr15:89,792,456
INFO 2026-06-08 09:01:43 MarkDuplicates Tracking 504318 as yet unmatched pairs. 5408 records in RAM.
INFO 2026-06-08 09:01:45 MarkDuplicates Read 446,000,000 records. Elapsed time: 00:15:06s. Time for last 1,000,000: 1s. Last read position: chr15:96,332,076
INFO 2026-06-08 09:01:45 MarkDuplicates Tracking 501833 as yet unmatched pairs. 2918 records in RAM.
INFO 2026-06-08 09:01:47 MarkDuplicates Read 447,000,000 records. Elapsed time: 00:15:08s. Time for last 1,000,000: 2s. Last read position: chr16:62,866
INFO 2026-06-08 09:01:47 MarkDuplicates Tracking 499095 as yet unmatched pairs. 79267 records in RAM.
INFO 2026-06-08 09:01:49 MarkDuplicates Read 448,000,000 records. Elapsed time: 00:15:10s. Time for last 1,000,000: 1s. Last read position: chr16:1,349,912
INFO 2026-06-08 09:01:49 MarkDuplicates Tracking 495699 as yet unmatched pairs. 75863 records in RAM.
INFO 2026-06-08 09:01:51 MarkDuplicates Read 449,000,000 records. Elapsed time: 00:15:12s. Time for last 1,000,000: 1s. Last read position: chr16:2,091,173
INFO 2026-06-08 09:01:51 MarkDuplicates Tracking 492413 as yet unmatched pairs. 72567 records in RAM.
INFO 2026-06-08 09:01:53 MarkDuplicates Read 450,000,000 records. Elapsed time: 00:15:14s. Time for last 1,000,000: 1s. Last read position: chr16:2,761,623
INFO 2026-06-08 09:01:53 MarkDuplicates Tracking 490768 as yet unmatched pairs. 70916 records in RAM.
INFO 2026-06-08 09:01:54 MarkDuplicates Read 451,000,000 records. Elapsed time: 00:15:15s. Time for last 1,000,000: 1s. Last read position: chr16:2,830,793
INFO 2026-06-08 09:01:54 MarkDuplicates Tracking 495438 as yet unmatched pairs. 75580 records in RAM.
INFO 2026-06-08 09:01:56 MarkDuplicates Read 452,000,000 records. Elapsed time: 00:15:17s. Time for last 1,000,000: 1s. Last read position: chr16:3,757,937
INFO 2026-06-08 09:01:56 MarkDuplicates Tracking 483926 as yet unmatched pairs. 64062 records in RAM.
INFO 2026-06-08 09:01:58 MarkDuplicates Read 453,000,000 records. Elapsed time: 00:15:19s. Time for last 1,000,000: 1s. Last read position: chr16:8,894,587
INFO 2026-06-08 09:01:58 MarkDuplicates Tracking 480923 as yet unmatched pairs. 61055 records in RAM.
INFO 2026-06-08 09:01:59 MarkDuplicates Read 454,000,000 records. Elapsed time: 00:15:20s. Time for last 1,000,000: 1s. Last read position: chr16:14,249,005
INFO 2026-06-08 09:01:59 MarkDuplicates Tracking 479076 as yet unmatched pairs. 59202 records in RAM.
INFO 2026-06-08 09:02:01 MarkDuplicates Read 455,000,000 records. Elapsed time: 00:15:22s. Time for last 1,000,000: 1s. Last read position: chr16:15,031,737
INFO 2026-06-08 09:02:01 MarkDuplicates Tracking 477120 as yet unmatched pairs. 57245 records in RAM.
INFO 2026-06-08 09:02:02 MarkDuplicates Read 456,000,000 records. Elapsed time: 00:15:24s. Time for last 1,000,000: 1s. Last read position: chr16:16,321,171
INFO 2026-06-08 09:02:02 MarkDuplicates Tracking 475388 as yet unmatched pairs. 55507 records in RAM.
INFO 2026-06-08 09:02:04 MarkDuplicates Read 457,000,000 records. Elapsed time: 00:15:25s. Time for last 1,000,000: 1s. Last read position: chr16:18,361,265
INFO 2026-06-08 09:02:04 MarkDuplicates Tracking 474880 as yet unmatched pairs. 54999 records in RAM.
INFO 2026-06-08 09:02:06 MarkDuplicates Read 458,000,000 records. Elapsed time: 00:15:27s. Time for last 1,000,000: 1s. Last read position: chr16:18,870,610
INFO 2026-06-08 09:02:06 MarkDuplicates Tracking 472992 as yet unmatched pairs. 53110 records in RAM.
INFO 2026-06-08 09:02:07 MarkDuplicates Read 459,000,000 records. Elapsed time: 00:15:28s. Time for last 1,000,000: 1s. Last read position: chr16:21,520,020
INFO 2026-06-08 09:02:07 MarkDuplicates Tracking 471927 as yet unmatched pairs. 52030 records in RAM.
INFO 2026-06-08 09:02:08 MarkDuplicates Read 460,000,000 records. Elapsed time: 00:15:30s. Time for last 1,000,000: 1s. Last read position: chr16:22,513,783
INFO 2026-06-08 09:02:08 MarkDuplicates Tracking 470370 as yet unmatched pairs. 50470 records in RAM.
INFO 2026-06-08 09:02:10 MarkDuplicates Read 461,000,000 records. Elapsed time: 00:15:31s. Time for last 1,000,000: 1s. Last read position: chr16:27,225,190
INFO 2026-06-08 09:02:10 MarkDuplicates Tracking 468737 as yet unmatched pairs. 48832 records in RAM.
INFO 2026-06-08 09:02:14 MarkDuplicates Read 462,000,000 records. Elapsed time: 00:15:35s. Time for last 1,000,000: 3s. Last read position: chr16:28,836,461
INFO 2026-06-08 09:02:14 MarkDuplicates Tracking 466708 as yet unmatched pairs. 46796 records in RAM.
INFO 2026-06-08 09:02:15 MarkDuplicates Read 463,000,000 records. Elapsed time: 00:15:36s. Time for last 1,000,000: 1s. Last read position: chr16:29,491,609
INFO 2026-06-08 09:02:15 MarkDuplicates Tracking 465836 as yet unmatched pairs. 45923 records in RAM.
INFO 2026-06-08 09:02:17 MarkDuplicates Read 464,000,000 records. Elapsed time: 00:15:38s. Time for last 1,000,000: 1s. Last read position: chr16:30,118,439
INFO 2026-06-08 09:02:17 MarkDuplicates Tracking 462929 as yet unmatched pairs. 43016 records in RAM.
INFO 2026-06-08 09:02:18 MarkDuplicates Read 465,000,000 records. Elapsed time: 00:15:39s. Time for last 1,000,000: 1s. Last read position: chr16:30,720,912
INFO 2026-06-08 09:02:18 MarkDuplicates Tracking 460981 as yet unmatched pairs. 41064 records in RAM.
INFO 2026-06-08 09:02:20 MarkDuplicates Read 466,000,000 records. Elapsed time: 00:15:41s. Time for last 1,000,000: 1s. Last read position: chr16:31,189,199
INFO 2026-06-08 09:02:20 MarkDuplicates Tracking 462450 as yet unmatched pairs. 42530 records in RAM.
INFO 2026-06-08 09:02:22 MarkDuplicates Read 467,000,000 records. Elapsed time: 00:15:43s. Time for last 1,000,000: 1s. Last read position: chr16:47,155,746
INFO 2026-06-08 09:02:22 MarkDuplicates Tracking 456917 as yet unmatched pairs. 36984 records in RAM.
INFO 2026-06-08 09:02:23 MarkDuplicates Read 468,000,000 records. Elapsed time: 00:15:45s. Time for last 1,000,000: 1s. Last read position: chr16:53,156,222
INFO 2026-06-08 09:02:23 MarkDuplicates Tracking 456636 as yet unmatched pairs. 36701 records in RAM.
INFO 2026-06-08 09:02:25 MarkDuplicates Read 469,000,000 records. Elapsed time: 00:15:46s. Time for last 1,000,000: 1s. Last read position: chr16:54,931,386
INFO 2026-06-08 09:02:25 MarkDuplicates Tracking 450059 as yet unmatched pairs. 30113 records in RAM.
INFO 2026-06-08 09:02:27 MarkDuplicates Read 470,000,000 records. Elapsed time: 00:15:48s. Time for last 1,000,000: 1s. Last read position: chr16:57,429,214
INFO 2026-06-08 09:02:27 MarkDuplicates Tracking 447247 as yet unmatched pairs. 27295 records in RAM.
INFO 2026-06-08 09:02:29 MarkDuplicates Read 471,000,000 records. Elapsed time: 00:15:50s. Time for last 1,000,000: 1s. Last read position: chr16:67,154,565
INFO 2026-06-08 09:02:29 MarkDuplicates Tracking 444315 as yet unmatched pairs. 24359 records in RAM.
INFO 2026-06-08 09:02:30 MarkDuplicates Read 472,000,000 records. Elapsed time: 00:15:52s. Time for last 1,000,000: 1s. Last read position: chr16:68,785,006
INFO 2026-06-08 09:02:30 MarkDuplicates Tracking 441842 as yet unmatched pairs. 21875 records in RAM.
INFO 2026-06-08 09:02:32 MarkDuplicates Read 473,000,000 records. Elapsed time: 00:15:53s. Time for last 1,000,000: 1s. Last read position: chr16:70,528,952
INFO 2026-06-08 09:02:32 MarkDuplicates Tracking 439324 as yet unmatched pairs. 19352 records in RAM.
INFO 2026-06-08 09:02:34 MarkDuplicates Read 474,000,000 records. Elapsed time: 00:15:55s. Time for last 1,000,000: 1s. Last read position: chr16:72,795,529
INFO 2026-06-08 09:02:34 MarkDuplicates Tracking 436378 as yet unmatched pairs. 16400 records in RAM.
INFO 2026-06-08 09:02:36 MarkDuplicates Read 475,000,000 records. Elapsed time: 00:15:57s. Time for last 1,000,000: 1s. Last read position: chr16:81,670,148
INFO 2026-06-08 09:02:36 MarkDuplicates Tracking 433719 as yet unmatched pairs. 13732 records in RAM.
INFO 2026-06-08 09:02:38 MarkDuplicates Read 476,000,000 records. Elapsed time: 00:15:59s. Time for last 1,000,000: 2s. Last read position: chr16:86,568,421
INFO 2026-06-08 09:02:38 MarkDuplicates Tracking 430604 as yet unmatched pairs. 10609 records in RAM.
INFO 2026-06-08 09:02:41 MarkDuplicates Read 477,000,000 records. Elapsed time: 00:16:02s. Time for last 1,000,000: 2s. Last read position: chr16:88,643,294
INFO 2026-06-08 09:02:41 MarkDuplicates Tracking 428732 as yet unmatched pairs. 8737 records in RAM.
INFO 2026-06-08 09:02:42 MarkDuplicates Read 478,000,000 records. Elapsed time: 00:16:03s. Time for last 1,000,000: 1s. Last read position: chr16:89,270,887
INFO 2026-06-08 09:02:42 MarkDuplicates Tracking 424817 as yet unmatched pairs. 4807 records in RAM.
INFO 2026-06-08 09:02:44 MarkDuplicates Read 479,000,000 records. Elapsed time: 00:16:05s. Time for last 1,000,000: 1s. Last read position: chr16:89,870,086
INFO 2026-06-08 09:02:44 MarkDuplicates Tracking 421374 as yet unmatched pairs. 1355 records in RAM.
INFO 2026-06-08 09:02:47 MarkDuplicates Read 480,000,000 records. Elapsed time: 00:16:08s. Time for last 1,000,000: 2s. Last read position: chr17:1,364,941
INFO 2026-06-08 09:02:47 MarkDuplicates Tracking 427278 as yet unmatched pairs. 149643 records in RAM.
INFO 2026-06-08 09:02:49 MarkDuplicates Read 481,000,000 records. Elapsed time: 00:16:10s. Time for last 1,000,000: 1s. Last read position: chr17:2,058,694
INFO 2026-06-08 09:02:49 MarkDuplicates Tracking 415742 as yet unmatched pairs. 138101 records in RAM.
INFO 2026-06-08 09:02:50 MarkDuplicates Read 482,000,000 records. Elapsed time: 00:16:12s. Time for last 1,000,000: 1s. Last read position: chr17:4,735,369
INFO 2026-06-08 09:02:50 MarkDuplicates Tracking 414041 as yet unmatched pairs. 136397 records in RAM.
INFO 2026-06-08 09:02:52 MarkDuplicates Read 483,000,000 records. Elapsed time: 00:16:13s. Time for last 1,000,000: 1s. Last read position: chr17:7,000,345
INFO 2026-06-08 09:02:52 MarkDuplicates Tracking 410083 as yet unmatched pairs. 132422 records in RAM.
INFO 2026-06-08 09:02:54 MarkDuplicates Read 484,000,000 records. Elapsed time: 00:16:16s. Time for last 1,000,000: 2s. Last read position: chr17:7,509,037
INFO 2026-06-08 09:02:54 MarkDuplicates Tracking 407380 as yet unmatched pairs. 129714 records in RAM.
INFO 2026-06-08 09:02:57 MarkDuplicates Read 485,000,000 records. Elapsed time: 00:16:18s. Time for last 1,000,000: 2s. Last read position: chr17:7,905,886
INFO 2026-06-08 09:02:57 MarkDuplicates Tracking 404944 as yet unmatched pairs. 127270 records in RAM.
INFO 2026-06-08 09:02:58 MarkDuplicates Read 486,000,000 records. Elapsed time: 00:16:19s. Time for last 1,000,000: 1s. Last read position: chr17:16,086,359
INFO 2026-06-08 09:02:58 MarkDuplicates Tracking 402248 as yet unmatched pairs. 124570 records in RAM.
INFO 2026-06-08 09:03:00 MarkDuplicates Read 487,000,000 records. Elapsed time: 00:16:21s. Time for last 1,000,000: 1s. Last read position: chr17:18,347,612
INFO 2026-06-08 09:03:00 MarkDuplicates Tracking 399301 as yet unmatched pairs. 121621 records in RAM.
INFO 2026-06-08 09:03:02 MarkDuplicates Read 488,000,000 records. Elapsed time: 00:16:23s. Time for last 1,000,000: 1s. Last read position: chr17:28,634,914
INFO 2026-06-08 09:03:02 MarkDuplicates Tracking 397479 as yet unmatched pairs. 119796 records in RAM.
INFO 2026-06-08 09:03:03 MarkDuplicates Read 489,000,000 records. Elapsed time: 00:16:25s. Time for last 1,000,000: 1s. Last read position: chr17:30,766,559
INFO 2026-06-08 09:03:03 MarkDuplicates Tracking 394926 as yet unmatched pairs. 117240 records in RAM.
INFO 2026-06-08 09:03:05 MarkDuplicates Read 490,000,000 records. Elapsed time: 00:16:26s. Time for last 1,000,000: 1s. Last read position: chr17:35,363,078
INFO 2026-06-08 09:03:05 MarkDuplicates Tracking 392179 as yet unmatched pairs. 114493 records in RAM.
INFO 2026-06-08 09:03:07 MarkDuplicates Read 491,000,000 records. Elapsed time: 00:16:28s. Time for last 1,000,000: 1s. Last read position: chr17:37,542,021
INFO 2026-06-08 09:03:07 MarkDuplicates Tracking 389764 as yet unmatched pairs. 112076 records in RAM.
INFO 2026-06-08 09:03:09 MarkDuplicates Read 492,000,000 records. Elapsed time: 00:16:30s. Time for last 1,000,000: 2s. Last read position: chr17:38,853,038
INFO 2026-06-08 09:03:09 MarkDuplicates Tracking 387414 as yet unmatched pairs. 109726 records in RAM.
INFO 2026-06-08 09:03:11 MarkDuplicates Read 493,000,000 records. Elapsed time: 00:16:32s. Time for last 1,000,000: 1s. Last read position: chr17:39,715,792
INFO 2026-06-08 09:03:11 MarkDuplicates Tracking 385697 as yet unmatched pairs. 108007 records in RAM.
INFO 2026-06-08 09:03:13 MarkDuplicates Read 494,000,000 records. Elapsed time: 00:16:35s. Time for last 1,000,000: 2s. Last read position: chr17:40,289,571
INFO 2026-06-08 09:03:13 MarkDuplicates Tracking 381644 as yet unmatched pairs. 103954 records in RAM.
INFO 2026-06-08 09:03:15 MarkDuplicates Read 495,000,000 records. Elapsed time: 00:16:36s. Time for last 1,000,000: 1s. Last read position: chr17:41,755,209
INFO 2026-06-08 09:03:15 MarkDuplicates Tracking 378671 as yet unmatched pairs. 100980 records in RAM.
INFO 2026-06-08 09:05:26 MarkDuplicates Read 496,000,000 records. Elapsed time: 00:18:48s. Time for last 1,000,000: 131s. Last read position: chr17:42,543,645
INFO 2026-06-08 09:05:26 MarkDuplicates Tracking 376118 as yet unmatched pairs. 98427 records in RAM.
INFO 2026-06-08 09:05:29 MarkDuplicates Read 497,000,000 records. Elapsed time: 00:18:50s. Time for last 1,000,000: 2s. Last read position: chr17:44,189,134
INFO 2026-06-08 09:05:29 MarkDuplicates Tracking 373458 as yet unmatched pairs. 95764 records in RAM.
INFO 2026-06-08 09:05:30 MarkDuplicates Read 498,000,000 records. Elapsed time: 00:18:52s. Time for last 1,000,000: 1s. Last read position: chr17:45,429,476
INFO 2026-06-08 09:05:30 MarkDuplicates Tracking 370159 as yet unmatched pairs. 92463 records in RAM.
INFO 2026-06-08 09:05:32 MarkDuplicates Read 499,000,000 records. Elapsed time: 00:18:53s. Time for last 1,000,000: 1s. Last read position: chr17:47,828,548
INFO 2026-06-08 09:05:32 MarkDuplicates Tracking 368140 as yet unmatched pairs. 90440 records in RAM.
INFO 2026-06-08 09:05:34 MarkDuplicates Read 500,000,000 records. Elapsed time: 00:18:55s. Time for last 1,000,000: 1s. Last read position: chr17:50,185,619
INFO 2026-06-08 09:05:34 MarkDuplicates Tracking 377132 as yet unmatched pairs. 99429 records in RAM.
INFO 2026-06-08 09:05:35 MarkDuplicates Read 501,000,000 records. Elapsed time: 00:18:57s. Time for last 1,000,000: 1s. Last read position: chr17:50,186,830
INFO 2026-06-08 09:05:35 MarkDuplicates Tracking 378109 as yet unmatched pairs. 100402 records in RAM.
INFO 2026-06-08 09:05:37 MarkDuplicates Read 502,000,000 records. Elapsed time: 00:18:58s. Time for last 1,000,000: 1s. Last read position: chr17:50,187,877
INFO 2026-06-08 09:05:37 MarkDuplicates Tracking 417277 as yet unmatched pairs. 139570 records in RAM.
INFO 2026-06-08 09:05:39 MarkDuplicates Read 503,000,000 records. Elapsed time: 00:19:00s. Time for last 1,000,000: 1s. Last read position: chr17:50,188,572
INFO 2026-06-08 09:05:39 MarkDuplicates Tracking 399808 as yet unmatched pairs. 122097 records in RAM.
INFO 2026-06-08 09:05:41 MarkDuplicates Read 504,000,000 records. Elapsed time: 00:19:02s. Time for last 1,000,000: 1s. Last read position: chr17:50,189,174
INFO 2026-06-08 09:05:41 MarkDuplicates Tracking 397798 as yet unmatched pairs. 120083 records in RAM.
INFO 2026-06-08 09:05:43 MarkDuplicates Read 505,000,000 records. Elapsed time: 00:19:05s. Time for last 1,000,000: 2s. Last read position: chr17:50,189,682
INFO 2026-06-08 09:05:43 MarkDuplicates Tracking 404880 as yet unmatched pairs. 127161 records in RAM.
INFO 2026-06-08 09:05:46 MarkDuplicates Read 506,000,000 records. Elapsed time: 00:19:07s. Time for last 1,000,000: 2s. Last read position: chr17:50,190,333
INFO 2026-06-08 09:05:46 MarkDuplicates Tracking 412583 as yet unmatched pairs. 134862 records in RAM.
INFO 2026-06-08 09:05:47 MarkDuplicates Read 507,000,000 records. Elapsed time: 00:19:08s. Time for last 1,000,000: 1s. Last read position: chr17:50,191,476
INFO 2026-06-08 09:05:47 MarkDuplicates Tracking 380315 as yet unmatched pairs. 102589 records in RAM.
INFO 2026-06-08 09:05:49 MarkDuplicates Read 508,000,000 records. Elapsed time: 00:19:10s. Time for last 1,000,000: 1s. Last read position: chr17:50,192,659
INFO 2026-06-08 09:05:49 MarkDuplicates Tracking 394218 as yet unmatched pairs. 116490 records in RAM.
INFO 2026-06-08 09:05:51 MarkDuplicates Read 509,000,000 records. Elapsed time: 00:19:12s. Time for last 1,000,000: 1s. Last read position: chr17:50,193,970
INFO 2026-06-08 09:05:51 MarkDuplicates Tracking 402267 as yet unmatched pairs. 124535 records in RAM.
INFO 2026-06-08 09:05:53 MarkDuplicates Read 510,000,000 records. Elapsed time: 00:19:14s. Time for last 1,000,000: 1s. Last read position: chr17:50,194,411
INFO 2026-06-08 09:05:53 MarkDuplicates Tracking 385993 as yet unmatched pairs. 108258 records in RAM.
INFO 2026-06-08 09:05:55 MarkDuplicates Read 511,000,000 records. Elapsed time: 00:19:16s. Time for last 1,000,000: 1s. Last read position: chr17:50,195,090
INFO 2026-06-08 09:05:55 MarkDuplicates Tracking 374656 as yet unmatched pairs. 96920 records in RAM.
INFO 2026-06-08 09:05:56 MarkDuplicates Read 512,000,000 records. Elapsed time: 00:19:18s. Time for last 1,000,000: 1s. Last read position: chr17:50,195,654
INFO 2026-06-08 09:05:56 MarkDuplicates Tracking 379124 as yet unmatched pairs. 101385 records in RAM.
INFO 2026-06-08 09:05:58 MarkDuplicates Read 513,000,000 records. Elapsed time: 00:19:20s. Time for last 1,000,000: 2s. Last read position: chr17:50,196,487
INFO 2026-06-08 09:05:58 MarkDuplicates Tracking 370133 as yet unmatched pairs. 92389 records in RAM.
INFO 2026-06-08 09:06:00 MarkDuplicates Read 514,000,000 records. Elapsed time: 00:19:21s. Time for last 1,000,000: 1s. Last read position: chr17:50,197,217
INFO 2026-06-08 09:06:00 MarkDuplicates Tracking 398130 as yet unmatched pairs. 120385 records in RAM.
INFO 2026-06-08 09:06:02 MarkDuplicates Read 515,000,000 records. Elapsed time: 00:19:23s. Time for last 1,000,000: 1s. Last read position: chr17:50,198,486
INFO 2026-06-08 09:06:02 MarkDuplicates Tracking 362989 as yet unmatched pairs. 85241 records in RAM.
INFO 2026-06-08 09:06:04 MarkDuplicates Read 516,000,000 records. Elapsed time: 00:19:25s. Time for last 1,000,000: 1s. Last read position: chr17:50,199,770
INFO 2026-06-08 09:06:04 MarkDuplicates Tracking 344499 as yet unmatched pairs. 66751 records in RAM.
INFO 2026-06-08 09:06:06 MarkDuplicates Read 517,000,000 records. Elapsed time: 00:19:27s. Time for last 1,000,000: 1s. Last read position: chr17:55,773,868
INFO 2026-06-08 09:06:06 MarkDuplicates Tracking 313985 as yet unmatched pairs. 36230 records in RAM.
INFO 2026-06-08 09:06:07 MarkDuplicates Read 518,000,000 records. Elapsed time: 00:19:29s. Time for last 1,000,000: 1s. Last read position: chr17:59,661,407
INFO 2026-06-08 09:06:07 MarkDuplicates Tracking 314315 as yet unmatched pairs. 36560 records in RAM.
INFO 2026-06-08 09:06:09 MarkDuplicates Read 519,000,000 records. Elapsed time: 00:19:30s. Time for last 1,000,000: 1s. Last read position: chr17:59,690,635
INFO 2026-06-08 09:06:09 MarkDuplicates Tracking 312672 as yet unmatched pairs. 34917 records in RAM.
INFO 2026-06-08 09:06:11 MarkDuplicates Read 520,000,000 records. Elapsed time: 00:19:32s. Time for last 1,000,000: 1s. Last read position: chr17:63,751,939
INFO 2026-06-08 09:06:11 MarkDuplicates Tracking 306188 as yet unmatched pairs. 28432 records in RAM.
INFO 2026-06-08 09:06:13 MarkDuplicates Read 521,000,000 records. Elapsed time: 00:19:34s. Time for last 1,000,000: 1s. Last read position: chr17:64,824,817
INFO 2026-06-08 09:06:13 MarkDuplicates Tracking 303934 as yet unmatched pairs. 26174 records in RAM.
INFO 2026-06-08 09:06:14 MarkDuplicates Read 522,000,000 records. Elapsed time: 00:19:35s. Time for last 1,000,000: 1s. Last read position: chr17:68,525,833
INFO 2026-06-08 09:06:14 MarkDuplicates Tracking 303222 as yet unmatched pairs. 25461 records in RAM.
INFO 2026-06-08 09:06:16 MarkDuplicates Read 523,000,000 records. Elapsed time: 00:19:37s. Time for last 1,000,000: 2s. Last read position: chr17:75,003,323
INFO 2026-06-08 09:06:16 MarkDuplicates Tracking 298372 as yet unmatched pairs. 20607 records in RAM.
INFO 2026-06-08 09:06:18 MarkDuplicates Read 524,000,000 records. Elapsed time: 00:19:40s. Time for last 1,000,000: 2s. Last read position: chr17:75,756,468
INFO 2026-06-08 09:06:18 MarkDuplicates Tracking 295757 as yet unmatched pairs. 17990 records in RAM.
INFO 2026-06-08 09:06:20 MarkDuplicates Read 525,000,000 records. Elapsed time: 00:19:41s. Time for last 1,000,000: 1s. Last read position: chr17:76,680,795
INFO 2026-06-08 09:06:20 MarkDuplicates Tracking 292583 as yet unmatched pairs. 14808 records in RAM.
INFO 2026-06-08 09:06:22 MarkDuplicates Read 526,000,000 records. Elapsed time: 00:19:43s. Time for last 1,000,000: 1s. Last read position: chr17:78,973,089
INFO 2026-06-08 09:06:22 MarkDuplicates Tracking 289875 as yet unmatched pairs. 12088 records in RAM.
INFO 2026-06-08 09:06:24 MarkDuplicates Read 527,000,000 records. Elapsed time: 00:19:45s. Time for last 1,000,000: 2s. Last read position: chr17:80,346,927
INFO 2026-06-08 09:06:24 MarkDuplicates Tracking 287004 as yet unmatched pairs. 9208 records in RAM.
INFO 2026-06-08 09:06:26 MarkDuplicates Read 528,000,000 records. Elapsed time: 00:19:47s. Time for last 1,000,000: 1s. Last read position: chr17:81,608,738
INFO 2026-06-08 09:06:26 MarkDuplicates Tracking 283918 as yet unmatched pairs. 6114 records in RAM.
INFO 2026-06-08 09:06:27 MarkDuplicates Read 529,000,000 records. Elapsed time: 00:19:48s. Time for last 1,000,000: 1s. Last read position: chr17:82,056,495
INFO 2026-06-08 09:06:27 MarkDuplicates Tracking 281066 as yet unmatched pairs. 3242 records in RAM.
INFO 2026-06-08 09:06:29 MarkDuplicates Read 530,000,000 records. Elapsed time: 00:19:50s. Time for last 1,000,000: 1s. Last read position: chr18:747,975
INFO 2026-06-08 09:06:29 MarkDuplicates Tracking 277505 as yet unmatched pairs. 17399 records in RAM.
INFO 2026-06-08 09:06:31 MarkDuplicates Read 531,000,000 records. Elapsed time: 00:19:52s. Time for last 1,000,000: 1s. Last read position: chr18:12,358,821
INFO 2026-06-08 09:06:31 MarkDuplicates Tracking 275115 as yet unmatched pairs. 14996 records in RAM.
INFO 2026-06-08 09:06:32 MarkDuplicates Read 532,000,000 records. Elapsed time: 00:19:53s. Time for last 1,000,000: 1s. Last read position: chr18:25,226,795
INFO 2026-06-08 09:06:32 MarkDuplicates Tracking 272876 as yet unmatched pairs. 12747 records in RAM.
INFO 2026-06-08 09:06:34 MarkDuplicates Read 533,000,000 records. Elapsed time: 00:19:55s. Time for last 1,000,000: 1s. Last read position: chr18:31,546,294
INFO 2026-06-08 09:06:34 MarkDuplicates Tracking 270695 as yet unmatched pairs. 10562 records in RAM.
INFO 2026-06-08 09:06:36 MarkDuplicates Read 534,000,000 records. Elapsed time: 00:19:57s. Time for last 1,000,000: 1s. Last read position: chr18:46,086,086
INFO 2026-06-08 09:06:36 MarkDuplicates Tracking 268558 as yet unmatched pairs. 8421 records in RAM.
INFO 2026-06-08 09:06:37 MarkDuplicates Read 535,000,000 records. Elapsed time: 00:19:58s. Time for last 1,000,000: 1s. Last read position: chr18:55,585,324
INFO 2026-06-08 09:06:37 MarkDuplicates Tracking 265268 as yet unmatched pairs. 5129 records in RAM.
INFO 2026-06-08 09:06:39 MarkDuplicates Read 536,000,000 records. Elapsed time: 00:20:00s. Time for last 1,000,000: 1s. Last read position: chr18:63,484,437
INFO 2026-06-08 09:06:39 MarkDuplicates Tracking 262199 as yet unmatched pairs. 2055 records in RAM.
INFO 2026-06-08 09:06:41 MarkDuplicates Read 537,000,000 records. Elapsed time: 00:20:03s. Time for last 1,000,000: 2s. Last read position: chr19:804,417
INFO 2026-06-08 09:06:41 MarkDuplicates Tracking 260042 as yet unmatched pairs. 114776 records in RAM.
INFO 2026-06-08 09:06:43 MarkDuplicates Read 538,000,000 records. Elapsed time: 00:20:05s. Time for last 1,000,000: 2s. Last read position: chr19:1,440,111
INFO 2026-06-08 09:06:43 MarkDuplicates Tracking 258680 as yet unmatched pairs. 113413 records in RAM.
INFO 2026-06-08 09:06:46 MarkDuplicates Read 539,000,000 records. Elapsed time: 00:20:07s. Time for last 1,000,000: 2s. Last read position: chr19:3,008,909
INFO 2026-06-08 09:06:46 MarkDuplicates Tracking 252661 as yet unmatched pairs. 107393 records in RAM.
INFO 2026-06-08 09:06:48 MarkDuplicates Read 540,000,000 records. Elapsed time: 00:20:09s. Time for last 1,000,000: 2s. Last read position: chr19:4,409,575
INFO 2026-06-08 09:06:48 MarkDuplicates Tracking 249206 as yet unmatched pairs. 103932 records in RAM.
INFO 2026-06-08 09:06:50 MarkDuplicates Read 541,000,000 records. Elapsed time: 00:20:11s. Time for last 1,000,000: 1s. Last read position: chr19:5,654,438
INFO 2026-06-08 09:06:50 MarkDuplicates Tracking 246229 as yet unmatched pairs. 100953 records in RAM.
INFO 2026-06-08 09:06:51 MarkDuplicates Read 542,000,000 records. Elapsed time: 00:20:12s. Time for last 1,000,000: 1s. Last read position: chr19:6,709,728
INFO 2026-06-08 09:06:51 MarkDuplicates Tracking 244668 as yet unmatched pairs. 99391 records in RAM.
INFO 2026-06-08 09:06:53 MarkDuplicates Read 543,000,000 records. Elapsed time: 00:20:14s. Time for last 1,000,000: 1s. Last read position: chr19:7,853,307
INFO 2026-06-08 09:06:53 MarkDuplicates Tracking 240121 as yet unmatched pairs. 94844 records in RAM.
INFO 2026-06-08 09:06:55 MarkDuplicates Read 544,000,000 records. Elapsed time: 00:20:16s. Time for last 1,000,000: 1s. Last read position: chr19:8,943,574
INFO 2026-06-08 09:06:55 MarkDuplicates Tracking 237317 as yet unmatched pairs. 92038 records in RAM.
INFO 2026-06-08 09:06:57 MarkDuplicates Read 545,000,000 records. Elapsed time: 00:20:18s. Time for last 1,000,000: 2s. Last read position: chr19:10,143,968
INFO 2026-06-08 09:06:57 MarkDuplicates Tracking 234857 as yet unmatched pairs. 89577 records in RAM.
INFO 2026-06-08 09:06:59 MarkDuplicates Read 546,000,000 records. Elapsed time: 00:20:20s. Time for last 1,000,000: 1s. Last read position: chr19:10,920,560
INFO 2026-06-08 09:06:59 MarkDuplicates Tracking 231969 as yet unmatched pairs. 86686 records in RAM.
INFO 2026-06-08 09:07:00 MarkDuplicates Read 547,000,000 records. Elapsed time: 00:20:21s. Time for last 1,000,000: 1s. Last read position: chr19:11,832,292
INFO 2026-06-08 09:07:00 MarkDuplicates Tracking 229280 as yet unmatched pairs. 83997 records in RAM.
INFO 2026-06-08 09:07:02 MarkDuplicates Read 548,000,000 records. Elapsed time: 00:20:23s. Time for last 1,000,000: 1s. Last read position: chr19:12,873,369
INFO 2026-06-08 09:07:02 MarkDuplicates Tracking 226108 as yet unmatched pairs. 80815 records in RAM.
INFO 2026-06-08 09:07:03 MarkDuplicates Read 549,000,000 records. Elapsed time: 00:20:25s. Time for last 1,000,000: 1s. Last read position: chr19:13,090,348
INFO 2026-06-08 09:07:03 MarkDuplicates Tracking 225961 as yet unmatched pairs. 80667 records in RAM.
INFO 2026-06-08 09:07:06 MarkDuplicates Read 550,000,000 records. Elapsed time: 00:20:27s. Time for last 1,000,000: 2s. Last read position: chr19:14,102,899
INFO 2026-06-08 09:07:06 MarkDuplicates Tracking 223021 as yet unmatched pairs. 77725 records in RAM.
INFO 2026-06-08 09:07:08 MarkDuplicates Read 551,000,000 records. Elapsed time: 00:20:30s. Time for last 1,000,000: 2s. Last read position: chr19:14,751,461
INFO 2026-06-08 09:07:08 MarkDuplicates Tracking 217350 as yet unmatched pairs. 72051 records in RAM.
INFO 2026-06-08 09:07:10 MarkDuplicates Read 552,000,000 records. Elapsed time: 00:20:31s. Time for last 1,000,000: 1s. Last read position: chr19:15,256,199
INFO 2026-06-08 09:07:10 MarkDuplicates Tracking 215136 as yet unmatched pairs. 69831 records in RAM.
INFO 2026-06-08 09:07:12 MarkDuplicates Read 553,000,000 records. Elapsed time: 00:20:33s. Time for last 1,000,000: 1s. Last read position: chr19:16,434,479
INFO 2026-06-08 09:07:12 MarkDuplicates Tracking 211936 as yet unmatched pairs. 66631 records in RAM.
INFO 2026-06-08 09:07:13 MarkDuplicates Read 554,000,000 records. Elapsed time: 00:20:34s. Time for last 1,000,000: 1s. Last read position: chr19:17,226,993
INFO 2026-06-08 09:07:13 MarkDuplicates Tracking 208174 as yet unmatched pairs. 62862 records in RAM.
INFO 2026-06-08 09:07:15 MarkDuplicates Read 555,000,000 records. Elapsed time: 00:20:36s. Time for last 1,000,000: 1s. Last read position: chr19:17,862,932
INFO 2026-06-08 09:07:15 MarkDuplicates Tracking 211051 as yet unmatched pairs. 65737 records in RAM.
INFO 2026-06-08 09:07:17 MarkDuplicates Read 556,000,000 records. Elapsed time: 00:20:38s. Time for last 1,000,000: 1s. Last read position: chr19:18,541,832
INFO 2026-06-08 09:07:17 MarkDuplicates Tracking 202833 as yet unmatched pairs. 57519 records in RAM.
INFO 2026-06-08 09:07:18 MarkDuplicates Read 557,000,000 records. Elapsed time: 00:20:39s. Time for last 1,000,000: 1s. Last read position: chr19:19,026,040
INFO 2026-06-08 09:07:18 MarkDuplicates Tracking 199982 as yet unmatched pairs. 54666 records in RAM.
INFO 2026-06-08 09:07:20 MarkDuplicates Read 558,000,000 records. Elapsed time: 00:20:41s. Time for last 1,000,000: 1s. Last read position: chr19:23,745,193
INFO 2026-06-08 09:07:20 MarkDuplicates Tracking 195878 as yet unmatched pairs. 50560 records in RAM.
INFO 2026-06-08 09:07:21 MarkDuplicates Read 559,000,000 records. Elapsed time: 00:20:43s. Time for last 1,000,000: 1s. Last read position: chr19:35,116,334
INFO 2026-06-08 09:07:21 MarkDuplicates Tracking 195256 as yet unmatched pairs. 49932 records in RAM.
INFO 2026-06-08 09:07:23 MarkDuplicates Read 560,000,000 records. Elapsed time: 00:20:44s. Time for last 1,000,000: 1s. Last read position: chr19:35,720,658
INFO 2026-06-08 09:07:23 MarkDuplicates Tracking 190741 as yet unmatched pairs. 45413 records in RAM.
INFO 2026-06-08 09:07:25 MarkDuplicates Read 561,000,000 records. Elapsed time: 00:20:46s. Time for last 1,000,000: 1s. Last read position: chr19:38,088,691
INFO 2026-06-08 09:07:25 MarkDuplicates Tracking 186864 as yet unmatched pairs. 41536 records in RAM.
INFO 2026-06-08 09:07:26 MarkDuplicates Read 562,000,000 records. Elapsed time: 00:20:47s. Time for last 1,000,000: 1s. Last read position: chr19:38,881,099
INFO 2026-06-08 09:07:26 MarkDuplicates Tracking 184814 as yet unmatched pairs. 39485 records in RAM.
INFO 2026-06-08 09:07:29 MarkDuplicates Read 563,000,000 records. Elapsed time: 00:20:50s. Time for last 1,000,000: 2s. Last read position: chr19:39,894,145
INFO 2026-06-08 09:07:29 MarkDuplicates Tracking 181501 as yet unmatched pairs. 36172 records in RAM.
INFO 2026-06-08 09:07:31 MarkDuplicates Read 564,000,000 records. Elapsed time: 00:20:52s. Time for last 1,000,000: 2s. Last read position: chr19:40,703,739
INFO 2026-06-08 09:07:31 MarkDuplicates Tracking 178381 as yet unmatched pairs. 33047 records in RAM.
INFO 2026-06-08 09:07:33 MarkDuplicates Read 565,000,000 records. Elapsed time: 00:20:54s. Time for last 1,000,000: 2s. Last read position: chr19:42,089,188
INFO 2026-06-08 09:07:33 MarkDuplicates Tracking 175595 as yet unmatched pairs. 30259 records in RAM.
INFO 2026-06-08 09:07:35 MarkDuplicates Read 566,000,000 records. Elapsed time: 00:20:56s. Time for last 1,000,000: 1s. Last read position: chr19:43,927,895
INFO 2026-06-08 09:07:35 MarkDuplicates Tracking 172406 as yet unmatched pairs. 27068 records in RAM.
INFO 2026-06-08 09:07:36 MarkDuplicates Read 567,000,000 records. Elapsed time: 00:20:57s. Time for last 1,000,000: 1s. Last read position: chr19:45,138,513
INFO 2026-06-08 09:07:36 MarkDuplicates Tracking 168807 as yet unmatched pairs. 23469 records in RAM.
INFO 2026-06-08 09:07:38 MarkDuplicates Read 568,000,000 records. Elapsed time: 00:20:59s. Time for last 1,000,000: 1s. Last read position: chr19:46,756,765
INFO 2026-06-08 09:07:38 MarkDuplicates Tracking 165629 as yet unmatched pairs. 20291 records in RAM.
INFO 2026-06-08 09:07:40 MarkDuplicates Read 569,000,000 records. Elapsed time: 00:21:01s. Time for last 1,000,000: 1s. Last read position: chr19:48,617,349
INFO 2026-06-08 09:07:40 MarkDuplicates Tracking 164098 as yet unmatched pairs. 18758 records in RAM.
INFO 2026-06-08 09:07:41 MarkDuplicates Read 570,000,000 records. Elapsed time: 00:21:02s. Time for last 1,000,000: 1s. Last read position: chr19:49,496,459
INFO 2026-06-08 09:07:41 MarkDuplicates Tracking 160871 as yet unmatched pairs. 15531 records in RAM.
INFO 2026-06-08 09:07:43 MarkDuplicates Read 571,000,000 records. Elapsed time: 00:21:04s. Time for last 1,000,000: 1s. Last read position: chr19:50,286,612
INFO 2026-06-08 09:07:43 MarkDuplicates Tracking 156683 as yet unmatched pairs. 11342 records in RAM.
INFO 2026-06-08 09:07:45 MarkDuplicates Read 572,000,000 records. Elapsed time: 00:21:06s. Time for last 1,000,000: 1s. Last read position: chr19:52,369,957
INFO 2026-06-08 09:07:45 MarkDuplicates Tracking 154045 as yet unmatched pairs. 8704 records in RAM.
INFO 2026-06-08 09:07:46 MarkDuplicates Read 573,000,000 records. Elapsed time: 00:21:07s. Time for last 1,000,000: 1s. Last read position: chr19:54,462,590
INFO 2026-06-08 09:07:46 MarkDuplicates Tracking 151247 as yet unmatched pairs. 5906 records in RAM.
INFO 2026-06-08 09:07:48 MarkDuplicates Read 574,000,000 records. Elapsed time: 00:21:09s. Time for last 1,000,000: 1s. Last read position: chr19:57,212,251
INFO 2026-06-08 09:07:48 MarkDuplicates Tracking 148422 as yet unmatched pairs. 3078 records in RAM.
INFO 2026-06-08 09:07:49 MarkDuplicates Read 575,000,000 records. Elapsed time: 00:21:10s. Time for last 1,000,000: 1s. Last read position: chr19:58,556,171
INFO 2026-06-08 09:07:49 MarkDuplicates Tracking 145684 as yet unmatched pairs. 340 records in RAM.
INFO 2026-06-08 09:07:52 MarkDuplicates Read 576,000,000 records. Elapsed time: 00:21:13s. Time for last 1,000,000: 2s. Last read position: chr20:3,576,911
INFO 2026-06-08 09:07:52 MarkDuplicates Tracking 142943 as yet unmatched pairs. 32409 records in RAM.
INFO 2026-06-08 09:07:54 MarkDuplicates Read 577,000,000 records. Elapsed time: 00:21:15s. Time for last 1,000,000: 2s. Last read position: chr20:17,604,554
INFO 2026-06-08 09:07:54 MarkDuplicates Tracking 141436 as yet unmatched pairs. 30898 records in RAM.
INFO 2026-06-08 09:07:56 MarkDuplicates Read 578,000,000 records. Elapsed time: 00:21:18s. Time for last 1,000,000: 2s. Last read position: chr20:25,218,578
INFO 2026-06-08 09:07:56 MarkDuplicates Tracking 137290 as yet unmatched pairs. 26750 records in RAM.
INFO 2026-06-08 09:07:59 MarkDuplicates Read 579,000,000 records. Elapsed time: 00:21:20s. Time for last 1,000,000: 2s. Last read position: chr20:34,534,698
INFO 2026-06-08 09:07:59 MarkDuplicates Tracking 136640 as yet unmatched pairs. 26100 records in RAM.
INFO 2026-06-08 09:08:01 MarkDuplicates Read 580,000,000 records. Elapsed time: 00:21:22s. Time for last 1,000,000: 2s. Last read position: chr20:35,954,119
INFO 2026-06-08 09:08:01 MarkDuplicates Tracking 132555 as yet unmatched pairs. 22013 records in RAM.
INFO 2026-06-08 09:08:02 MarkDuplicates Read 581,000,000 records. Elapsed time: 00:21:24s. Time for last 1,000,000: 1s. Last read position: chr20:38,535,133
INFO 2026-06-08 09:08:02 MarkDuplicates Tracking 129289 as yet unmatched pairs. 18746 records in RAM.
INFO 2026-06-08 09:08:04 MarkDuplicates Read 582,000,000 records. Elapsed time: 00:21:26s. Time for last 1,000,000: 2s. Last read position: chr20:45,327,318
INFO 2026-06-08 09:08:04 MarkDuplicates Tracking 130766 as yet unmatched pairs. 20222 records in RAM.
INFO 2026-06-08 09:08:07 MarkDuplicates Read 583,000,000 records. Elapsed time: 00:21:28s. Time for last 1,000,000: 2s. Last read position: chr20:47,290,248
INFO 2026-06-08 09:08:07 MarkDuplicates Tracking 123709 as yet unmatched pairs. 13161 records in RAM.
INFO 2026-06-08 09:08:08 MarkDuplicates Read 584,000,000 records. Elapsed time: 00:21:29s. Time for last 1,000,000: 1s. Last read position: chr20:50,942,055
INFO 2026-06-08 09:08:08 MarkDuplicates Tracking 121084 as yet unmatched pairs. 10536 records in RAM.
INFO 2026-06-08 09:08:11 MarkDuplicates Read 585,000,000 records. Elapsed time: 00:21:32s. Time for last 1,000,000: 2s. Last read position: chr20:58,903,532
INFO 2026-06-08 09:08:11 MarkDuplicates Tracking 120748 as yet unmatched pairs. 10198 records in RAM.
INFO 2026-06-08 09:08:13 MarkDuplicates Read 586,000,000 records. Elapsed time: 00:21:34s. Time for last 1,000,000: 1s. Last read position: chr20:62,387,661
INFO 2026-06-08 09:08:13 MarkDuplicates Tracking 118964 as yet unmatched pairs. 8412 records in RAM.
INFO 2026-06-08 09:08:15 MarkDuplicates Read 587,000,000 records. Elapsed time: 00:21:36s. Time for last 1,000,000: 2s. Last read position: chr20:63,789,836
INFO 2026-06-08 09:08:15 MarkDuplicates Tracking 111672 as yet unmatched pairs. 1114 records in RAM.
INFO 2026-06-08 09:08:17 MarkDuplicates Read 588,000,000 records. Elapsed time: 00:21:38s. Time for last 1,000,000: 1s. Last read position: chr21:8,258,918
INFO 2026-06-08 09:08:17 MarkDuplicates Tracking 109027 as yet unmatched pairs. 21709 records in RAM.
INFO 2026-06-08 09:08:19 MarkDuplicates Read 589,000,000 records. Elapsed time: 00:21:40s. Time for last 1,000,000: 1s. Last read position: chr21:25,911,780
INFO 2026-06-08 09:08:19 MarkDuplicates Tracking 108814 as yet unmatched pairs. 21493 records in RAM.
INFO 2026-06-08 09:08:21 MarkDuplicates Read 590,000,000 records. Elapsed time: 00:21:42s. Time for last 1,000,000: 1s. Last read position: chr21:32,678,598
INFO 2026-06-08 09:08:21 MarkDuplicates Tracking 104681 as yet unmatched pairs. 17360 records in RAM.
INFO 2026-06-08 09:08:22 MarkDuplicates Read 591,000,000 records. Elapsed time: 00:21:43s. Time for last 1,000,000: 1s. Last read position: chr21:36,214,103
INFO 2026-06-08 09:08:22 MarkDuplicates Tracking 102419 as yet unmatched pairs. 15096 records in RAM.
INFO 2026-06-08 09:08:24 MarkDuplicates Read 592,000,000 records. Elapsed time: 00:21:45s. Time for last 1,000,000: 1s. Last read position: chr21:39,345,196
INFO 2026-06-08 09:08:24 MarkDuplicates Tracking 99859 as yet unmatched pairs. 12536 records in RAM.
INFO 2026-06-08 09:08:26 MarkDuplicates Read 593,000,000 records. Elapsed time: 00:21:47s. Time for last 1,000,000: 2s. Last read position: chr21:43,967,992
INFO 2026-06-08 09:08:26 MarkDuplicates Tracking 97066 as yet unmatched pairs. 9743 records in RAM.
INFO 2026-06-08 09:08:28 MarkDuplicates Read 594,000,000 records. Elapsed time: 00:21:49s. Time for last 1,000,000: 2s. Last read position: chr21:45,468,436
INFO 2026-06-08 09:08:28 MarkDuplicates Tracking 95058 as yet unmatched pairs. 7734 records in RAM.
INFO 2026-06-08 09:08:30 MarkDuplicates Read 595,000,000 records. Elapsed time: 00:21:51s. Time for last 1,000,000: 2s. Last read position: chr21:46,112,547
INFO 2026-06-08 09:08:30 MarkDuplicates Tracking 92415 as yet unmatched pairs. 5091 records in RAM.
INFO 2026-06-08 09:08:32 MarkDuplicates Read 596,000,000 records. Elapsed time: 00:21:53s. Time for last 1,000,000: 1s. Last read position: chr21:46,444,748
INFO 2026-06-08 09:08:32 MarkDuplicates Tracking 88122 as yet unmatched pairs. 796 records in RAM.
INFO 2026-06-08 09:08:34 MarkDuplicates Read 597,000,000 records. Elapsed time: 00:21:56s. Time for last 1,000,000: 2s. Last read position: chr22:20,241,703
INFO 2026-06-08 09:08:34 MarkDuplicates Tracking 85043 as yet unmatched pairs. 38073 records in RAM.
INFO 2026-06-08 09:08:36 MarkDuplicates Read 598,000,000 records. Elapsed time: 00:21:57s. Time for last 1,000,000: 1s. Last read position: chr22:23,287,220
INFO 2026-06-08 09:08:36 MarkDuplicates Tracking 83727 as yet unmatched pairs. 36757 records in RAM.
INFO 2026-06-08 09:08:38 MarkDuplicates Read 599,000,000 records. Elapsed time: 00:22:00s. Time for last 1,000,000: 2s. Last read position: chr22:24,555,747
INFO 2026-06-08 09:08:38 MarkDuplicates Tracking 79010 as yet unmatched pairs. 32040 records in RAM.
INFO 2026-06-08 09:08:40 MarkDuplicates Read 600,000,000 records. Elapsed time: 00:22:01s. Time for last 1,000,000: 1s. Last read position: chr22:29,296,261
INFO 2026-06-08 09:08:40 MarkDuplicates Tracking 78970 as yet unmatched pairs. 32000 records in RAM.
INFO 2026-06-08 09:08:42 MarkDuplicates Read 601,000,000 records. Elapsed time: 00:22:04s. Time for last 1,000,000: 2s. Last read position: chr22:31,085,159
INFO 2026-06-08 09:08:42 MarkDuplicates Tracking 74074 as yet unmatched pairs. 27099 records in RAM.
INFO 2026-06-08 09:08:44 MarkDuplicates Read 602,000,000 records. Elapsed time: 00:22:05s. Time for last 1,000,000: 1s. Last read position: chr22:35,393,530
INFO 2026-06-08 09:08:44 MarkDuplicates Tracking 71346 as yet unmatched pairs. 24367 records in RAM.
INFO 2026-06-08 09:08:46 MarkDuplicates Read 603,000,000 records. Elapsed time: 00:22:07s. Time for last 1,000,000: 1s. Last read position: chr22:36,349,129
INFO 2026-06-08 09:08:46 MarkDuplicates Tracking 68633 as yet unmatched pairs. 21654 records in RAM.
INFO 2026-06-08 09:08:48 MarkDuplicates Read 604,000,000 records. Elapsed time: 00:22:09s. Time for last 1,000,000: 1s. Last read position: chr22:37,944,460
INFO 2026-06-08 09:08:48 MarkDuplicates Tracking 65159 as yet unmatched pairs. 18177 records in RAM.
INFO 2026-06-08 09:08:50 MarkDuplicates Read 605,000,000 records. Elapsed time: 00:22:11s. Time for last 1,000,000: 2s. Last read position: chr22:39,014,336
INFO 2026-06-08 09:08:50 MarkDuplicates Tracking 62280 as yet unmatched pairs. 15295 records in RAM.
INFO 2026-06-08 09:08:52 MarkDuplicates Read 606,000,000 records. Elapsed time: 00:22:13s. Time for last 1,000,000: 1s. Last read position: chr22:41,157,152
INFO 2026-06-08 09:08:52 MarkDuplicates Tracking 59762 as yet unmatched pairs. 12776 records in RAM.
INFO 2026-06-08 09:08:55 MarkDuplicates Read 607,000,000 records. Elapsed time: 00:22:16s. Time for last 1,000,000: 2s. Last read position: chr22:42,213,565
INFO 2026-06-08 09:08:55 MarkDuplicates Tracking 56848 as yet unmatched pairs. 9862 records in RAM.
INFO 2026-06-08 09:08:57 MarkDuplicates Read 608,000,000 records. Elapsed time: 00:22:18s. Time for last 1,000,000: 2s. Last read position: chr22:45,574,552
INFO 2026-06-08 09:08:57 MarkDuplicates Tracking 54071 as yet unmatched pairs. 7085 records in RAM.
INFO 2026-06-08 09:08:59 MarkDuplicates Read 609,000,000 records. Elapsed time: 00:22:20s. Time for last 1,000,000: 2s. Last read position: chr22:50,284,645
INFO 2026-06-08 09:08:59 MarkDuplicates Tracking 51562 as yet unmatched pairs. 4575 records in RAM.
INFO 2026-06-08 09:09:01 MarkDuplicates Read 610,000,000 records. Elapsed time: 00:22:22s. Time for last 1,000,000: 1s. Last read position: chr22:50,721,911
INFO 2026-06-08 09:09:01 MarkDuplicates Tracking 47474 as yet unmatched pairs. 484 records in RAM.
INFO 2026-06-08 09:09:03 MarkDuplicates Read 611,000,000 records. Elapsed time: 00:22:25s. Time for last 1,000,000: 2s. Last read position: chrX:12,976,277
INFO 2026-06-08 09:09:03 MarkDuplicates Tracking 49968 as yet unmatched pairs. 47799 records in RAM.
INFO 2026-06-08 09:09:05 MarkDuplicates Read 612,000,000 records. Elapsed time: 00:22:26s. Time for last 1,000,000: 1s. Last read position: chrX:26,427,908
INFO 2026-06-08 09:09:05 MarkDuplicates Tracking 41805 as yet unmatched pairs. 39636 records in RAM.
INFO 2026-06-08 09:09:07 MarkDuplicates Read 613,000,000 records. Elapsed time: 00:22:28s. Time for last 1,000,000: 1s. Last read position: chrX:41,578,445
INFO 2026-06-08 09:09:07 MarkDuplicates Tracking 39587 as yet unmatched pairs. 37417 records in RAM.
INFO 2026-06-08 09:09:09 MarkDuplicates Read 614,000,000 records. Elapsed time: 00:22:30s. Time for last 1,000,000: 2s. Last read position: chrX:47,584,958
INFO 2026-06-08 09:09:09 MarkDuplicates Tracking 38053 as yet unmatched pairs. 35883 records in RAM.
INFO 2026-06-08 09:09:11 MarkDuplicates Read 615,000,000 records. Elapsed time: 00:22:32s. Time for last 1,000,000: 1s. Last read position: chrX:49,039,218
INFO 2026-06-08 09:09:11 MarkDuplicates Tracking 34740 as yet unmatched pairs. 32570 records in RAM.
INFO 2026-06-08 09:09:13 MarkDuplicates Read 616,000,000 records. Elapsed time: 00:22:34s. Time for last 1,000,000: 1s. Last read position: chrX:53,432,355
INFO 2026-06-08 09:09:13 MarkDuplicates Tracking 31626 as yet unmatched pairs. 29456 records in RAM.
INFO 2026-06-08 09:09:15 MarkDuplicates Read 617,000,000 records. Elapsed time: 00:22:36s. Time for last 1,000,000: 1s. Last read position: chrX:57,136,480
INFO 2026-06-08 09:09:15 MarkDuplicates Tracking 28580 as yet unmatched pairs. 26410 records in RAM.
INFO 2026-06-08 09:09:16 MarkDuplicates Read 618,000,000 records. Elapsed time: 00:22:38s. Time for last 1,000,000: 1s. Last read position: chrX:71,250,496
INFO 2026-06-08 09:09:16 MarkDuplicates Tracking 25766 as yet unmatched pairs. 23595 records in RAM.
INFO 2026-06-08 09:09:19 MarkDuplicates Read 619,000,000 records. Elapsed time: 00:22:40s. Time for last 1,000,000: 2s. Last read position: chrX:74,521,024
INFO 2026-06-08 09:09:19 MarkDuplicates Tracking 23313 as yet unmatched pairs. 21142 records in RAM.
INFO 2026-06-08 09:09:21 MarkDuplicates Read 620,000,000 records. Elapsed time: 00:22:42s. Time for last 1,000,000: 1s. Last read position: chrX:80,735,134
INFO 2026-06-08 09:09:21 MarkDuplicates Tracking 20940 as yet unmatched pairs. 18769 records in RAM.
INFO 2026-06-08 09:09:23 MarkDuplicates Read 621,000,000 records. Elapsed time: 00:22:44s. Time for last 1,000,000: 2s. Last read position: chrX:106,985,100
INFO 2026-06-08 09:09:23 MarkDuplicates Tracking 18353 as yet unmatched pairs. 16182 records in RAM.
INFO 2026-06-08 09:09:25 MarkDuplicates Read 622,000,000 records. Elapsed time: 00:22:46s. Time for last 1,000,000: 2s. Last read position: chrX:119,633,407
INFO 2026-06-08 09:09:25 MarkDuplicates Tracking 15632 as yet unmatched pairs. 13461 records in RAM.
INFO 2026-06-08 09:09:27 MarkDuplicates Read 623,000,000 records. Elapsed time: 00:22:48s. Time for last 1,000,000: 1s. Last read position: chrX:130,147,552
INFO 2026-06-08 09:09:27 MarkDuplicates Tracking 13365 as yet unmatched pairs. 11194 records in RAM.
INFO 2026-06-08 09:09:28 MarkDuplicates Read 624,000,000 records. Elapsed time: 00:22:50s. Time for last 1,000,000: 1s. Last read position: chrX:149,776,520
INFO 2026-06-08 09:09:28 MarkDuplicates Tracking 10623 as yet unmatched pairs. 8452 records in RAM.
INFO 2026-06-08 09:09:30 MarkDuplicates Read 625,000,000 records. Elapsed time: 00:22:51s. Time for last 1,000,000: 1s. Last read position: chrX:153,953,607
INFO 2026-06-08 09:09:30 MarkDuplicates Tracking 8118 as yet unmatched pairs. 5947 records in RAM.
INFO 2026-06-08 09:09:32 MarkDuplicates Read 626,000,000 records. Elapsed time: 00:22:53s. Time for last 1,000,000: 1s. Last read position: chrX:154,399,381
INFO 2026-06-08 09:09:32 MarkDuplicates Tracking 7868 as yet unmatched pairs. 5697 records in RAM.
INFO 2026-06-08 09:09:34 MarkDuplicates Read 627,000,000 records. Elapsed time: 00:22:55s. Time for last 1,000,000: 1s. Last read position: chrY:18,992,495
INFO 2026-06-08 09:09:34 MarkDuplicates Tracking 2267 as yet unmatched pairs. 176 records in RAM.
INFO 2026-06-08 09:09:35 MarkDuplicates Read 628,000,000 records. Elapsed time: 00:22:56s. Time for last 1,000,000: 1s. Last read position: KI270733.1:131,374
INFO 2026-06-08 09:09:35 MarkDuplicates Tracking 666 as yet unmatched pairs. 639 records in RAM.
INFO 2026-06-08 09:09:36 MarkDuplicates Read 628486629 records. 0 pairs never matched.
INFO 2026-06-08 09:10:25 MarkDuplicates After buildSortedReadEndLists freeMemory: 204141336; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:10:25 MarkDuplicates Will retain up to 1987051520 duplicate indices before spilling to disk.
INFO 2026-06-08 09:10:31 MarkDuplicates Traversing read pair information and detecting duplicates.
WARNING 2026-06-08 09:10:31 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 09:10:54 OpticalDuplicateFinder Large duplicate set. size = 1186
INFO 2026-06-08 09:10:54 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,861
INFO 2026-06-08 09:10:54 OpticalDuplicateFinder Large duplicate set. size = 2172
INFO 2026-06-08 09:10:54 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,318
INFO 2026-06-08 09:10:54 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,673
INFO 2026-06-08 09:10:54 OpticalDuplicateFinder Large duplicate set. size = 1341
INFO 2026-06-08 09:10:54 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-13,868
INFO 2026-06-08 09:10:54 OpticalDuplicateFinder Large duplicate set. size = 1056
INFO 2026-06-08 09:10:54 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,580
INFO 2026-06-08 09:10:54 OpticalDuplicateFinder Large duplicate set. size = 1070
INFO 2026-06-08 09:10:54 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,472
INFO 2026-06-08 09:11:22 OpticalDuplicateFinder Large duplicate set. size = 1002
INFO 2026-06-08 09:11:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,799
INFO 2026-06-08 09:11:28 OpticalDuplicateFinder Large duplicate set. size = 1267
INFO 2026-06-08 09:11:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,898
INFO 2026-06-08 09:11:28 OpticalDuplicateFinder Large duplicate set. size = 1201
INFO 2026-06-08 09:11:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,386
INFO 2026-06-08 09:11:29 OpticalDuplicateFinder Large duplicate set. size = 1121
INFO 2026-06-08 09:11:29 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,957
INFO 2026-06-08 09:11:29 OpticalDuplicateFinder Large duplicate set. size = 1030
INFO 2026-06-08 09:11:29 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,748
INFO 2026-06-08 09:11:29 OpticalDuplicateFinder Large duplicate set. size = 1033
INFO 2026-06-08 09:11:29 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,432
INFO 2026-06-08 09:11:29 OpticalDuplicateFinder Large duplicate set. size = 1219
INFO 2026-06-08 09:11:29 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,822
INFO 2026-06-08 09:11:29 OpticalDuplicateFinder Large duplicate set. size = 1205
INFO 2026-06-08 09:11:29 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,513
INFO 2026-06-08 09:11:29 OpticalDuplicateFinder Large duplicate set. size = 1617
INFO 2026-06-08 09:11:29 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,563
INFO 2026-06-08 09:11:30 OpticalDuplicateFinder Large duplicate set. size = 1536
INFO 2026-06-08 09:11:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,466
INFO 2026-06-08 09:11:30 OpticalDuplicateFinder Large duplicate set. size = 1828
INFO 2026-06-08 09:11:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,176
INFO 2026-06-08 09:11:30 OpticalDuplicateFinder Large duplicate set. size = 1037
INFO 2026-06-08 09:11:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,966
INFO 2026-06-08 09:11:30 OpticalDuplicateFinder Large duplicate set. size = 1049
INFO 2026-06-08 09:11:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,286
INFO 2026-06-08 09:11:30 OpticalDuplicateFinder Large duplicate set. size = 1365
INFO 2026-06-08 09:11:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,175
INFO 2026-06-08 09:11:30 OpticalDuplicateFinder Large duplicate set. size = 1020
INFO 2026-06-08 09:11:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,205
INFO 2026-06-08 09:11:30 OpticalDuplicateFinder Large duplicate set. size = 1188
INFO 2026-06-08 09:11:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,843
INFO 2026-06-08 09:11:30 OpticalDuplicateFinder Large duplicate set. size = 1108
INFO 2026-06-08 09:11:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,776
INFO 2026-06-08 09:11:31 OpticalDuplicateFinder Large duplicate set. size = 1185
INFO 2026-06-08 09:11:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,423
INFO 2026-06-08 09:11:31 OpticalDuplicateFinder Large duplicate set. size = 1008
INFO 2026-06-08 09:11:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,514
INFO 2026-06-08 09:12:00 MarkDuplicates Traversing fragment information and detecting duplicates.
WARNING 2026-06-08 09:12:00 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 09:13:07 MarkDuplicates Sorting list of duplicate records.
INFO 2026-06-08 09:13:09 MarkDuplicates After generateDuplicateIndexes freeMemory: 203959616; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:13:09 MarkDuplicates Marking 306096746 records as duplicates.
INFO 2026-06-08 09:13:09 MarkDuplicates Found 14282736 optical duplicate clusters.
INFO 2026-06-08 09:13:09 MarkDuplicates Reads are assumed to be ordered by: coordinate
INFO 2026-06-08 09:13:26 MarkDuplicates Written 10,000,000 records. Elapsed time: 00:00:17s. Time for last 10,000,000: 17s. Last read position: chr1:26,795,044
INFO 2026-06-08 09:13:43 MarkDuplicates Written 20,000,000 records. Elapsed time: 00:00:33s. Time for last 10,000,000: 16s. Last read position: chr1:52,857,087
INFO 2026-06-08 09:13:59 MarkDuplicates Written 30,000,000 records. Elapsed time: 00:00:50s. Time for last 10,000,000: 16s. Last read position: chr1:119,915,257
INFO 2026-06-08 09:14:16 MarkDuplicates Written 40,000,000 records. Elapsed time: 00:01:07s. Time for last 10,000,000: 17s. Last read position: chr1:150,556,198
INFO 2026-06-08 09:14:33 MarkDuplicates Written 50,000,000 records. Elapsed time: 00:01:24s. Time for last 10,000,000: 16s. Last read position: chr1:155,766,357
INFO 2026-06-08 09:14:50 MarkDuplicates Written 60,000,000 records. Elapsed time: 00:01:40s. Time for last 10,000,000: 16s. Last read position: chr1:172,585,056
INFO 2026-06-08 09:15:07 MarkDuplicates Written 70,000,000 records. Elapsed time: 00:01:57s. Time for last 10,000,000: 17s. Last read position: chr1:220,100,608
INFO 2026-06-08 09:15:25 MarkDuplicates Written 80,000,000 records. Elapsed time: 00:02:15s. Time for last 10,000,000: 17s. Last read position: chr2:28,776,853
INFO 2026-06-08 09:15:40 MarkDuplicates Written 90,000,000 records. Elapsed time: 00:02:31s. Time for last 10,000,000: 15s. Last read position: chr2:54,655,987
INFO 2026-06-08 09:15:57 MarkDuplicates Written 100,000,000 records. Elapsed time: 00:02:47s. Time for last 10,000,000: 16s. Last read position: chr2:109,836,624
INFO 2026-06-08 09:16:13 MarkDuplicates Written 110,000,000 records. Elapsed time: 00:03:03s. Time for last 10,000,000: 16s. Last read position: chr2:189,007,570
INFO 2026-06-08 09:16:29 MarkDuplicates Written 120,000,000 records. Elapsed time: 00:03:19s. Time for last 10,000,000: 15s. Last read position: chr2:218,642,059
INFO 2026-06-08 09:16:44 MarkDuplicates Written 130,000,000 records. Elapsed time: 00:03:35s. Time for last 10,000,000: 15s. Last read position: chr3:33,425,619
INFO 2026-06-08 09:17:00 MarkDuplicates Written 140,000,000 records. Elapsed time: 00:03:50s. Time for last 10,000,000: 15s. Last read position: chr3:98,521,272
INFO 2026-06-08 09:17:15 MarkDuplicates Written 150,000,000 records. Elapsed time: 00:04:05s. Time for last 10,000,000: 14s. Last read position: chr3:161,429,426
INFO 2026-06-08 09:17:30 MarkDuplicates Written 160,000,000 records. Elapsed time: 00:04:21s. Time for last 10,000,000: 15s. Last read position: chr4:22,388,122
INFO 2026-06-08 09:17:47 MarkDuplicates Written 170,000,000 records. Elapsed time: 00:04:37s. Time for last 10,000,000: 16s. Last read position: chr4:128,862,026
INFO 2026-06-08 09:18:02 MarkDuplicates Written 180,000,000 records. Elapsed time: 00:04:52s. Time for last 10,000,000: 15s. Last read position: chr5:55,951,526
INFO 2026-06-08 09:18:18 MarkDuplicates Written 190,000,000 records. Elapsed time: 00:05:08s. Time for last 10,000,000: 15s. Last read position: chr5:141,189,276
INFO 2026-06-08 09:18:33 MarkDuplicates Written 200,000,000 records. Elapsed time: 00:05:23s. Time for last 10,000,000: 14s. Last read position: chr5:176,968,704
INFO 2026-06-08 09:18:48 MarkDuplicates Written 210,000,000 records. Elapsed time: 00:05:38s. Time for last 10,000,000: 15s. Last read position: chr6:31,354,253
INFO 2026-06-08 09:19:03 MarkDuplicates Written 220,000,000 records. Elapsed time: 00:05:53s. Time for last 10,000,000: 15s. Last read position: chr6:43,597,703
INFO 2026-06-08 09:19:18 MarkDuplicates Written 230,000,000 records. Elapsed time: 00:06:08s. Time for last 10,000,000: 15s. Last read position: chr6:122,458,617
INFO 2026-06-08 09:19:33 MarkDuplicates Written 240,000,000 records. Elapsed time: 00:06:23s. Time for last 10,000,000: 15s. Last read position: chr7:5,528,422
INFO 2026-06-08 09:19:48 MarkDuplicates Written 250,000,000 records. Elapsed time: 00:06:39s. Time for last 10,000,000: 15s. Last read position: chr7:75,213,490
INFO 2026-06-08 09:20:04 MarkDuplicates Written 260,000,000 records. Elapsed time: 00:06:54s. Time for last 10,000,000: 15s. Last read position: chr7:117,320,695
INFO 2026-06-08 09:20:19 MarkDuplicates Written 270,000,000 records. Elapsed time: 00:07:09s. Time for last 10,000,000: 14s. Last read position: chr7:151,214,665
INFO 2026-06-08 09:20:34 MarkDuplicates Written 280,000,000 records. Elapsed time: 00:07:24s. Time for last 10,000,000: 14s. Last read position: chr8:56,073,174
INFO 2026-06-08 09:20:48 MarkDuplicates Written 290,000,000 records. Elapsed time: 00:07:39s. Time for last 10,000,000: 14s. Last read position: chr8:140,890,582
INFO 2026-06-08 09:21:03 MarkDuplicates Written 300,000,000 records. Elapsed time: 00:07:53s. Time for last 10,000,000: 14s. Last read position: chr9:36,583,670
INFO 2026-06-08 09:21:18 MarkDuplicates Written 310,000,000 records. Elapsed time: 00:08:08s. Time for last 10,000,000: 15s. Last read position: chr9:128,179,095
INFO 2026-06-08 09:21:34 MarkDuplicates Written 320,000,000 records. Elapsed time: 00:08:24s. Time for last 10,000,000: 16s. Last read position: chr10:12,167,718
INFO 2026-06-08 09:21:49 MarkDuplicates Written 330,000,000 records. Elapsed time: 00:08:39s. Time for last 10,000,000: 14s. Last read position: chr10:73,916,419
INFO 2026-06-08 09:22:04 MarkDuplicates Written 340,000,000 records. Elapsed time: 00:08:54s. Time for last 10,000,000: 14s. Last read position: chr11:1,244,114
INFO 2026-06-08 09:22:18 MarkDuplicates Written 350,000,000 records. Elapsed time: 00:09:09s. Time for last 10,000,000: 14s. Last read position: chr11:60,179,940
INFO 2026-06-08 09:22:33 MarkDuplicates Written 360,000,000 records. Elapsed time: 00:09:23s. Time for last 10,000,000: 14s. Last read position: chr11:67,442,423
INFO 2026-06-08 09:22:48 MarkDuplicates Written 370,000,000 records. Elapsed time: 00:09:38s. Time for last 10,000,000: 14s. Last read position: chr11:122,796,909
INFO 2026-06-08 09:23:02 MarkDuplicates Written 380,000,000 records. Elapsed time: 00:09:53s. Time for last 10,000,000: 14s. Last read position: chr12:30,639,600
INFO 2026-06-08 09:23:17 MarkDuplicates Written 390,000,000 records. Elapsed time: 00:10:07s. Time for last 10,000,000: 14s. Last read position: chr12:56,720,989
INFO 2026-06-08 09:23:31 MarkDuplicates Written 400,000,000 records. Elapsed time: 00:10:22s. Time for last 10,000,000: 14s. Last read position: chr12:120,163,073
INFO 2026-06-08 09:23:46 MarkDuplicates Written 410,000,000 records. Elapsed time: 00:10:36s. Time for last 10,000,000: 14s. Last read position: chr13:108,209,571
INFO 2026-06-08 09:24:00 MarkDuplicates Written 420,000,000 records. Elapsed time: 00:10:51s. Time for last 10,000,000: 14s. Last read position: chr14:71,733,677
INFO 2026-06-08 09:24:15 MarkDuplicates Written 430,000,000 records. Elapsed time: 00:11:05s. Time for last 10,000,000: 14s. Last read position: chr15:22,933,851
INFO 2026-06-08 09:24:30 MarkDuplicates Written 440,000,000 records. Elapsed time: 00:11:20s. Time for last 10,000,000: 14s. Last read position: chr15:70,679,650
INFO 2026-06-08 09:24:45 MarkDuplicates Written 450,000,000 records. Elapsed time: 00:11:35s. Time for last 10,000,000: 14s. Last read position: chr16:2,761,623
INFO 2026-06-08 09:24:59 MarkDuplicates Written 460,000,000 records. Elapsed time: 00:11:49s. Time for last 10,000,000: 14s. Last read position: chr16:22,513,783
INFO 2026-06-08 09:25:14 MarkDuplicates Written 470,000,000 records. Elapsed time: 00:12:04s. Time for last 10,000,000: 14s. Last read position: chr16:57,429,214
INFO 2026-06-08 09:25:29 MarkDuplicates Written 480,000,000 records. Elapsed time: 00:12:19s. Time for last 10,000,000: 14s. Last read position: chr17:1,364,941
INFO 2026-06-08 09:25:44 MarkDuplicates Written 490,000,000 records. Elapsed time: 00:12:34s. Time for last 10,000,000: 14s. Last read position: chr17:35,363,078
INFO 2026-06-08 09:25:58 MarkDuplicates Written 500,000,000 records. Elapsed time: 00:12:48s. Time for last 10,000,000: 14s. Last read position: chr17:50,185,619
INFO 2026-06-08 09:26:13 MarkDuplicates Written 510,000,000 records. Elapsed time: 00:13:03s. Time for last 10,000,000: 14s. Last read position: chr17:50,194,411
INFO 2026-06-08 09:26:27 MarkDuplicates Written 520,000,000 records. Elapsed time: 00:13:17s. Time for last 10,000,000: 14s. Last read position: chr17:63,751,939
INFO 2026-06-08 09:26:42 MarkDuplicates Written 530,000,000 records. Elapsed time: 00:13:32s. Time for last 10,000,000: 14s. Last read position: chr18:747,975
INFO 2026-06-08 09:26:57 MarkDuplicates Written 540,000,000 records. Elapsed time: 00:13:47s. Time for last 10,000,000: 14s. Last read position: chr19:4,409,575
INFO 2026-06-08 09:27:12 MarkDuplicates Written 550,000,000 records. Elapsed time: 00:14:02s. Time for last 10,000,000: 14s. Last read position: chr19:14,102,899
INFO 2026-06-08 09:27:26 MarkDuplicates Written 560,000,000 records. Elapsed time: 00:14:16s. Time for last 10,000,000: 14s. Last read position: chr19:35,720,658
INFO 2026-06-08 09:27:41 MarkDuplicates Written 570,000,000 records. Elapsed time: 00:14:31s. Time for last 10,000,000: 14s. Last read position: chr19:49,496,459
INFO 2026-06-08 09:27:56 MarkDuplicates Written 580,000,000 records. Elapsed time: 00:14:46s. Time for last 10,000,000: 14s. Last read position: chr20:35,954,119
INFO 2026-06-08 09:28:10 MarkDuplicates Written 590,000,000 records. Elapsed time: 00:15:01s. Time for last 10,000,000: 14s. Last read position: chr21:32,678,598
INFO 2026-06-08 09:28:25 MarkDuplicates Written 600,000,000 records. Elapsed time: 00:15:15s. Time for last 10,000,000: 14s. Last read position: chr22:29,296,261
INFO 2026-06-08 09:28:40 MarkDuplicates Written 610,000,000 records. Elapsed time: 00:15:30s. Time for last 10,000,000: 14s. Last read position: chr22:50,721,911
INFO 2026-06-08 09:28:54 MarkDuplicates Written 620,000,000 records. Elapsed time: 00:15:45s. Time for last 10,000,000: 14s. Last read position: chrX:80,735,134
INFO 2026-06-08 09:29:10 MarkDuplicates Written 630,000,000 records. Elapsed time: 00:16:01s. Time for last 10,000,000: 15s. Last read position: */*
INFO 2026-06-08 09:29:16 MarkDuplicates Writing complete. Closing input iterator.
INFO 2026-06-08 09:29:16 MarkDuplicates Duplicate Index cleanup.
INFO 2026-06-08 09:29:16 MarkDuplicates Getting Memory Stats.
INFO 2026-06-08 09:29:16 MarkDuplicates Before output close freeMemory: 203937824; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:29:16 MarkDuplicates Closed outputs. Getting more Memory Stats.
INFO 2026-06-08 09:29:16 MarkDuplicates After output close freeMemory: 104171408; totalMemory: 134217728; maxMemory: 63585648640
[Mon Jun 08 09:29:16 GMT 2026] picard.sam.markduplicates.MarkDuplicates done. Elapsed time: 42.65 minutes.
Runtime.totalMemory()=134217728
ls: *cram: No such file or directory
ls: *.crai: No such file or directory