Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cf/d56d1bbbfc3f92de49f69d36167906/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cf/d56d1bbbfc3f92de49f69d36167906/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/80/94f87efce0c9ea1070184b2035b932/659_6i-T1-TRNA-1_A23MVY2LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5c/0a873d9884b3f2d94f5fca36ab3aa5/659_6i-T1-TRNA-1_A23MVY2LT4_1.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (4 inputs)

[W::hts_idx_load3] The index file is older than the data file: 659_6i-T1-TRNA-1_A23MVY2LT4_1.Aligned.sortedByCoord.out.bam.bai
Load BAM file ...  Done
report duplicte rate based on sequence ...
report duplicte rate based on mapping  ...
generate R script ...
null device 
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