Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/90/e378e5dd83a5f6c3771cce04403126/659_bNS-T1-TRNA-1_A23MVY2LT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-bba2394f-ea06-4038-829e-f0bb41c45b0f/67/1d6e211d8f66f1c89f8ec9083ff96d/dummy_file_fusioncatcher.txt
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7d/9355c6f60bed62f1ab22b2880ef958/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7d/9355c6f60bed62f1ab22b2880ef958/.command.run
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/01/523eff72ca351049c894d2f4244515/659_bNS-T1-TRNA-1_A23MVY2LT4_1.arriba.fusions.filtered_pass_only.tsv
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
==> STAGING COMPLETE (6 inputs)
[32mRunning application...[0m
0%| | 0/22 [00:00<?, ?it/s]EML4--ALK
starfusion
arriba
SNTB2--TANGO6
starfusion
arriba
TLK2P1--AC110079.1
starfusion
HSD17B4--MT-RNR2
starfusion
MRPS18A--ESCO1
starfusion
TMEM120B--ORAI1
starfusion
MTO1--C17orf50
starfusion
PCDHGB2--PCDHGB6
arriba
PCDHGB2--PCDHGA10
arriba
PCDHGB2--PCDHGC4
arriba
PCDHGB2--PCDHGC5
arriba
PCDHGB2--PCDHGA11
arriba
PCDHGB2--PCDHGA8
arriba
PCDHGB2--PCDHGA9
arriba
PCDHGB2--PCDHGB7
arriba
PCDHGB2--PCDHGA12
arriba
PCDHGB2--PCDHGC3
arriba
IGFL1P2--HIF3A
arriba
TVP23C--CDRT4
arriba
PCDHA6--PCDHA13
arriba
PCDHA6--PCDHAC1
arriba
PCDHA6--PCDHAC2
arriba
Processing EML4--ALK: 0%| | 0/22 [00:00<?, ?it/s]
Processing EML4--ALK: 5%|▍ | 1/22 [00:00<00:02, 9.22it/s]
Processing SNTB2--TANGO6: 5%|▍ | 1/22 [00:00<00:02, 9.22it/s]
Processing SNTB2--TANGO6: 9%|▉ | 2/22 [00:00<00:02, 9.45it/s]
Processing TLK2P1--AC110079.1: 9%|▉ | 2/22 [00:00<00:02, 9.45it/s]
Processing TLK2P1--AC110079.1: 14%|█▎ | 3/22 [00:00<00:01, 9.53it/s]
Processing HSD17B4--MT-RNR2: 14%|█▎ | 3/22 [00:00<00:01, 9.53it/s]
Processing HSD17B4--MT-RNR2: 18%|█▊ | 4/22 [00:00<00:01, 9.57it/s]
Processing MRPS18A--ESCO1: 18%|█▊ | 4/22 [00:00<00:01, 9.57it/s]
Processing MRPS18A--ESCO1: 23%|██▎ | 5/22 [00:00<00:01, 9.60it/s]
Processing TMEM120B--ORAI1: 23%|██▎ | 5/22 [00:00<00:01, 9.60it/s]
Processing TMEM120B--ORAI1: 27%|██▋ | 6/22 [00:00<00:01, 9.61it/s]
Processing MTO1--C17orf50: 27%|██▋ | 6/22 [00:00<00:01, 9.61it/s]
Processing MTO1--C17orf50: 32%|███▏ | 7/22 [00:00<00:01, 9.62it/s]
Processing PCDHGB2--PCDHGB6: 32%|███▏ | 7/22 [00:00<00:01, 9.62it/s]
Processing PCDHGB2--PCDHGB6: 36%|███▋ | 8/22 [00:00<00:01, 9.62it/s]
Processing PCDHGB2--PCDHGA10: 36%|███▋ | 8/22 [00:00<00:01, 9.62it/s]
Processing PCDHGB2--PCDHGA10: 41%|████ | 9/22 [00:00<00:01, 9.63it/s]
Processing PCDHGB2--PCDHGC4: 41%|████ | 9/22 [00:00<00:01, 9.63it/s]
Processing PCDHGB2--PCDHGC4: 45%|████▌ | 10/22 [00:01<00:01, 9.63it/s]
Processing PCDHGB2--PCDHGC5: 45%|████▌ | 10/22 [00:01<00:01, 9.63it/s]
Processing PCDHGB2--PCDHGC5: 50%|█████ | 11/22 [00:01<00:01, 9.63it/s]
Processing PCDHGB2--PCDHGA11: 50%|█████ | 11/22 [00:01<00:01, 9.63it/s]
Processing PCDHGB2--PCDHGA11: 55%|█████▍ | 12/22 [00:01<00:01, 9.63it/s]
Processing PCDHGB2--PCDHGA8: 55%|█████▍ | 12/22 [00:01<00:01, 9.63it/s]
Processing PCDHGB2--PCDHGA8: 59%|█████▉ | 13/22 [00:01<00:00, 9.63it/s]
Processing PCDHGB2--PCDHGA9: 59%|█████▉ | 13/22 [00:01<00:00, 9.63it/s]
Processing PCDHGB2--PCDHGA9: 64%|██████▎ | 14/22 [00:01<00:00, 9.63it/s]
Processing PCDHGB2--PCDHGB7: 64%|██████▎ | 14/22 [00:01<00:00, 9.63it/s]
Processing PCDHGB2--PCDHGB7: 68%|██████▊ | 15/22 [00:01<00:00, 9.64it/s]
Processing PCDHGB2--PCDHGA12: 68%|██████▊ | 15/22 [00:01<00:00, 9.64it/s]
Processing PCDHGB2--PCDHGA12: 73%|███████▎ | 16/22 [00:01<00:00, 9.64it/s]
Processing PCDHGB2--PCDHGC3: 73%|███████▎ | 16/22 [00:01<00:00, 9.64it/s]
Processing PCDHGB2--PCDHGC3: 77%|███████▋ | 17/22 [00:01<00:00, 9.64it/s]
Processing IGFL1P2--HIF3A: 77%|███████▋ | 17/22 [00:01<00:00, 9.64it/s]
Processing IGFL1P2--HIF3A: 82%|████████▏ | 18/22 [00:01<00:00, 9.64it/s]
Processing TVP23C--CDRT4: 82%|████████▏ | 18/22 [00:01<00:00, 9.64it/s]
Processing TVP23C--CDRT4: 86%|████████▋ | 19/22 [00:01<00:00, 9.64it/s]
Processing PCDHA6--PCDHA13: 86%|████████▋ | 19/22 [00:01<00:00, 9.64it/s]
Processing PCDHA6--PCDHA13: 91%|█████████ | 20/22 [00:02<00:00, 9.64it/s]
Processing PCDHA6--PCDHAC1: 91%|█████████ | 20/22 [00:02<00:00, 9.64it/s]
Processing PCDHA6--PCDHAC1: 95%|█████████▌| 21/22 [00:02<00:00, 9.64it/s]
Processing PCDHA6--PCDHAC2: 95%|█████████▌| 21/22 [00:02<00:00, 9.64it/s]
Processing PCDHA6--PCDHAC2: 100%|██████████| 22/22 [00:02<00:00, 9.64it/s]
Processing PCDHA6--PCDHAC2: 100%|██████████| 22/22 [00:02<00:00, 9.62it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory