.command.out - Workdir - NFCORE_RNAFUSION:RNAFUSION:FUSIONINSPECTOR_WORKFLOW:AGAT_CONVERTSPGFF2TSV (659_bTo-T1-TRNA-1_A23MVY2LT4_2)

File Info

Filename: .command.out
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/81/0afd7ae422d1bb094aaf485ba64058/.command.out
Size: 72.6 KB
Task: NFCORE_RNAFUSION:RNAFUSION:FUSIONINSPECTOR_WORKFLOW:AGAT_CONVERTSPGFF2TSV (659_bTo-T1-TRNA-1_A23MVY2LT4_2)
Attempt
Content

Using standard /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/agat_config.yaml file

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|   Another GFF Analysis Toolkit (AGAT) - Version: v1.2.0                      |
|   https://github.com/NBISweden/AGAT                                          |
|   National Bioinformatics Infrastructure Sweden (NBIS) - www.nbis.se         |
 ------------------------------------------------------------------------------
                                        
                                       
                          ------ Start parsing ------                           
-------------------------- parse options and metadata --------------------------
=> Accessing the feature_levels YAML file
Using standard /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/feature_levels.yaml file
=> Attribute used to group features when no Parent/ID relationship exists (i.e common tag):
	* locus_tag
	* gene_id
=> merge_loci option deactivated
=> Machine information:
	This script is being run by perl v5.32.1
	Bioperl location being used: /usr/local/lib/perl5/site_perl/Bio/
	Operating system being used: linux 
=> Accessing Ontology
	No ontology accessible from the gff file header!
	We use the SOFA ontology distributed with AGAT:
		/usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/so.obo
	Read ontology /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/so.obo:
		4 root terms, and 2596 total terms, and 1516 leaf terms
	Filtering ontology:
		We found 1861 terms that are sequence_feature or is_a child of it.
--------------------------------- parsing file ---------------------------------
=> Number of line in file: 2045
=> Number of comment lines: 0
=> Fasta included: No
=> Number of features lines: 2045
=> Number of feature type (3rd column): 2
	* Level1: 0 => 
	* level2: 0 => 
	* level3: 2 => exon CDS
	* unknown: 0 => 
=>Check because only level3 features:
 * Number of feature with Parent attribute:0
 * Number of feature with a common attribute:2045
  => Some common attributes and some Parent attributes missing.
  /!\ For features where both are missing A single Level2 features (e.g. mRNA) and a single level1 (e.g. gene) will be created by AGAT, and all level3 feautres (e,g, CDS,exon) will be attached to them. This is probably not what you want...
  see B. 2.2 and 3. at https://agat.readthedocs.io/en/latest/agat_how_does_it_work.html 
  /!\ For features where the common attribute or the parent attribute is missing, it would be fine as long as you do not expect isoforms in your annotation (Eukaryote).  see B. 4. at https://agat.readthedocs.io/en/latest/agat_how_does_it_work.html 
  !! You might try to fix the issue by choosing a common tag attribute to use in order to group the features correctly (parameter --ct in agat_convert_sp_gxf2gxf.pl).
=> Version of the Bioperl GFF parser selected by AGAT: 2
                  ------ End parsing (done in 1 second) ------                  


                           ------ Start checks ------                           
---------------------------- Check1: feature types -----------------------------
----------------------------------- ontology -----------------------------------
All feature types in agreement with the Ontology.
------------------------------------- agat -------------------------------------
AGAT can deal with all the encountered feature types (3rd column)
------------------------------ done in 0 seconds -------------------------------

------------------------------ Check2: duplicates ------------------------------
None found
------------------------------ done in 0 seconds -------------------------------

-------------------------- Check3: sequential bucket ---------------------------
Nothing to check as sequential bucket!
------------------------------ done in 0 seconds -------------------------------

--------------------------- Check4: l2 linked to l3 ----------------------------
L1 and L2 created: 
AC092807.3--DDAH1	HAVANA	gene	13647	23704	.	+	.	FI_gene_label "DDAH1^ENSG00000153904.21"  ; ID "AC092807.3--DDAH1^DDAH1^ENSG00000153904.21"  ; ccdsid "CCDS705.1"  ; exon_id "ENSE00001013010.7"  ; exon_number 1 ; gene_id "AC092807.3--DDAH1^DDAH1^ENSG00000153904.21"  ; gene_name DDAH1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000191181.3"  ; havana_transcript "OTTHUMT00000029189.3"  ; hgnc_id "HGNC:2715"  ; level 2 ; orig_coord_info "chr1,85464743,85465045,-"  ; protein_id "ENSP00000284031.8"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AC092807.3--DDAH1^ENST00000284031.13"  ; transcript_name "DDAH1-201"  ; transcript_support_level 1 ; transcript_type protein_coding
AC092807.3--DDAH1	HAVANA	mRNA	13647	23704	.	+	.	FI_gene_label "DDAH1^ENSG00000153904.21"  ; ID "AC092807.3--DDAH1^ENST00000284031.13"  ; Parent "AC092807.3--DDAH1^DDAH1^ENSG00000153904.21"  ; ccdsid "CCDS705.1"  ; exon_id "ENSE00001013010.7"  ; exon_number 1 ; gene_id "AC092807.3--DDAH1^DDAH1^ENSG00000153904.21"  ; gene_name DDAH1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000191181.3"  ; havana_transcript "OTTHUMT00000029189.3"  ; hgnc_id "HGNC:2715"  ; level 2 ; orig_coord_info "chr1,85464743,85465045,-"  ; protein_id "ENSP00000284031.8"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AC092807.3--DDAH1^ENST00000284031.13"  ; transcript_name "DDAH1-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
ACTBP6--ACTB	HAVANA	gene	6203	10583	.	+	.	FI_gene_label "ACTB^ENSG00000075624.17"  ; ID "ACTBP6--ACTB^ACTB^ENSG00000075624.17"  ; exon_id "ENSE00003542066.1"  ; exon_number 3 ; gene_id "ACTBP6--ACTB^ACTB^ENSG00000075624.17"  ; gene_name ACTB ; gene_type protein_coding ; havana_gene "OTTHUMG00000023268.12"  ; havana_transcript "OTTHUMT00000324028.2"  ; hgnc_id "HGNC:132"  ; level 2 ; orig_coord_info "chr7,5529535,5529657,-"  ; protein_id "ENSP00000401032.1"  ; tag alternative_5_UTR mRNA_end_NF cds_end_NF dotter_confirmed ; transcript_id "ACTBP6--ACTB^ENST00000414620.1"  ; transcript_name "ACTB-201"  ; transcript_support_level 4 ; transcript_type protein_coding
ACTBP6--ACTB	HAVANA	mRNA	6203	10583	.	+	.	FI_gene_label "ACTB^ENSG00000075624.17"  ; ID "ACTBP6--ACTB^ENST00000414620.1"  ; Parent "ACTBP6--ACTB^ACTB^ENSG00000075624.17"  ; exon_id "ENSE00003542066.1"  ; exon_number 3 ; gene_id "ACTBP6--ACTB^ACTB^ENSG00000075624.17"  ; gene_name ACTB ; gene_type protein_coding ; havana_gene "OTTHUMG00000023268.12"  ; havana_transcript "OTTHUMT00000324028.2"  ; hgnc_id "HGNC:132"  ; level 2 ; orig_coord_info "chr7,5529535,5529657,-"  ; protein_id "ENSP00000401032.1"  ; tag alternative_5_UTR mRNA_end_NF cds_end_NF dotter_confirmed ; transcript_id "ACTBP6--ACTB^ENST00000414620.1"  ; transcript_name "ACTB-201"  ; transcript_support_level 4 ; transcript_type protein_coding
L1 and L2 created: 
AKAP12--PHBP1	HAVANA	gene	1408	13303	.	+	.	FI_gene_label "AKAP12^ENSG00000131016.17"  ; ID "AKAP12--PHBP1^AKAP12^ENSG00000131016.17"  ; ccdsid "CCDS5229.1"  ; exon_id "ENSE00001128616.1"  ; exon_number 1 ; gene_id "AKAP12--PHBP1^AKAP12^ENSG00000131016.17"  ; gene_name AKAP12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000015833.3"  ; havana_transcript "OTTHUMT00000042712.1"  ; hgnc_id "HGNC:370"  ; level 2 ; orig_coord_info "chr6,151240563,151240724,+"  ; protein_id "ENSP00000253332.1"  ; tag basic appris_principal_3 CCDS ; transcript_id "AKAP12--PHBP1^ENST00000253332.5"  ; transcript_name "AKAP12-201"  ; transcript_support_level 1 ; transcript_type protein_coding
AKAP12--PHBP1	HAVANA	mRNA	1408	13303	.	+	.	FI_gene_label "AKAP12^ENSG00000131016.17"  ; ID "AKAP12--PHBP1^ENST00000253332.5"  ; Parent "AKAP12--PHBP1^AKAP12^ENSG00000131016.17"  ; ccdsid "CCDS5229.1"  ; exon_id "ENSE00001128616.1"  ; exon_number 1 ; gene_id "AKAP12--PHBP1^AKAP12^ENSG00000131016.17"  ; gene_name AKAP12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000015833.3"  ; havana_transcript "OTTHUMT00000042712.1"  ; hgnc_id "HGNC:370"  ; level 2 ; orig_coord_info "chr6,151240563,151240724,+"  ; protein_id "ENSP00000253332.1"  ; tag basic appris_principal_3 CCDS ; transcript_id "AKAP12--PHBP1^ENST00000253332.5"  ; transcript_name "AKAP12-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
AKAP12--ULBP3	HAVANA	gene	1408	13303	.	+	.	FI_gene_label "AKAP12^ENSG00000131016.17"  ; ID "AKAP12--ULBP3^AKAP12^ENSG00000131016.17"  ; ccdsid "CCDS5229.1"  ; exon_id "ENSE00001128616.1"  ; exon_number 1 ; gene_id "AKAP12--ULBP3^AKAP12^ENSG00000131016.17"  ; gene_name AKAP12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000015833.3"  ; havana_transcript "OTTHUMT00000042712.1"  ; hgnc_id "HGNC:370"  ; level 2 ; orig_coord_info "chr6,151240563,151240724,+"  ; protein_id "ENSP00000253332.1"  ; tag basic appris_principal_3 CCDS ; transcript_id "AKAP12--ULBP3^ENST00000253332.5"  ; transcript_name "AKAP12-201"  ; transcript_support_level 1 ; transcript_type protein_coding
AKAP12--ULBP3	HAVANA	mRNA	1408	13303	.	+	.	FI_gene_label "AKAP12^ENSG00000131016.17"  ; ID "AKAP12--ULBP3^ENST00000253332.5"  ; Parent "AKAP12--ULBP3^AKAP12^ENSG00000131016.17"  ; ccdsid "CCDS5229.1"  ; exon_id "ENSE00001128616.1"  ; exon_number 1 ; gene_id "AKAP12--ULBP3^AKAP12^ENSG00000131016.17"  ; gene_name AKAP12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000015833.3"  ; havana_transcript "OTTHUMT00000042712.1"  ; hgnc_id "HGNC:370"  ; level 2 ; orig_coord_info "chr6,151240563,151240724,+"  ; protein_id "ENSP00000253332.1"  ; tag basic appris_principal_3 CCDS ; transcript_id "AKAP12--ULBP3^ENST00000253332.5"  ; transcript_name "AKAP12-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
AKAP12--ULBP3	HAVANA	gene	18090	24109	.	+	.	FI_gene_label "ULBP3^ENSG00000131019.11"  ; ID "AKAP12--ULBP3^ULBP3^ENSG00000131019.11"  ; ccdsid "CCDS5225.1"  ; exon_id "ENSE00001444257.2"  ; exon_number 1 ; gene_id "AKAP12--ULBP3^ULBP3^ENSG00000131019.11"  ; gene_name ULBP3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000015811.3"  ; havana_transcript "OTTHUMT00000042678.3"  ; hgnc_id "HGNC:14895"  ; level 2 ; orig_coord_info "chr6,150068979,150069066,-"  ; protein_id "ENSP00000356308.1"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AKAP12--ULBP3^ENST00000367339.7"  ; transcript_name "ULBP3-201"  ; transcript_support_level 5 ; transcript_type protein_coding
AKAP12--ULBP3	HAVANA	mRNA	18090	24109	.	+	.	FI_gene_label "ULBP3^ENSG00000131019.11"  ; ID "AKAP12--ULBP3^ENST00000367339.7"  ; Parent "AKAP12--ULBP3^ULBP3^ENSG00000131019.11"  ; ccdsid "CCDS5225.1"  ; exon_id "ENSE00001444257.2"  ; exon_number 1 ; gene_id "AKAP12--ULBP3^ULBP3^ENSG00000131019.11"  ; gene_name ULBP3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000015811.3"  ; havana_transcript "OTTHUMT00000042678.3"  ; hgnc_id "HGNC:14895"  ; level 2 ; orig_coord_info "chr6,150068979,150069066,-"  ; protein_id "ENSP00000356308.1"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AKAP12--ULBP3^ENST00000367339.7"  ; transcript_name "ULBP3-201"  ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created: 
ANKRD46--STK3	HAVANA	gene	1026	13680	.	+	.	FI_gene_label "ANKRD46^ENSG00000186106.11"  ; ID "ANKRD46--STK3^ANKRD46^ENSG00000186106.11"  ; ccdsid "CCDS6287.1"  ; exon_id "ENSE00001339682.1"  ; exon_number 3 ; gene_id "ANKRD46--STK3^ANKRD46^ENSG00000186106.11"  ; gene_name ANKRD46 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164724.3"  ; havana_transcript "OTTHUMT00000379900.1"  ; hgnc_id "HGNC:27229"  ; level 2 ; orig_coord_info "chr8,100529523,100529833,-"  ; protein_id "ENSP00000335287.3"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ANKRD46--STK3^ENST00000335659.7"  ; transcript_name "ANKRD46-201"  ; transcript_support_level 1 ; transcript_type protein_coding
ANKRD46--STK3	HAVANA	mRNA	1026	13680	.	+	.	FI_gene_label "ANKRD46^ENSG00000186106.11"  ; ID "ANKRD46--STK3^ENST00000335659.7"  ; Parent "ANKRD46--STK3^ANKRD46^ENSG00000186106.11"  ; ccdsid "CCDS6287.1"  ; exon_id "ENSE00001339682.1"  ; exon_number 3 ; gene_id "ANKRD46--STK3^ANKRD46^ENSG00000186106.11"  ; gene_name ANKRD46 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164724.3"  ; havana_transcript "OTTHUMT00000379900.1"  ; hgnc_id "HGNC:27229"  ; level 2 ; orig_coord_info "chr8,100529523,100529833,-"  ; protein_id "ENSP00000335287.3"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ANKRD46--STK3^ENST00000335659.7"  ; transcript_name "ANKRD46-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
ANKRD46--STK3	HAVANA	gene	28522	50099	.	+	.	FI_gene_label "STK3^ENSG00000104375.17"  ; ID "ANKRD46--STK3^STK3^ENSG00000104375.17"  ; ccdsid "CCDS47900.1"  ; exon_id "ENSE00001478384.5"  ; exon_number 1 ; gene_id "ANKRD46--STK3^STK3^ENSG00000104375.17"  ; gene_name STK3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164651.10"  ; havana_transcript "OTTHUMT00000379635.3"  ; hgnc_id "HGNC:11406"  ; level 2 ; orig_coord_info "chr8,98825515,98825540,-"  ; protein_id "ENSP00000390500.2"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ANKRD46--STK3^ENST00000419617.7"  ; transcript_name "STK3-201"  ; transcript_support_level 1 ; transcript_type protein_coding
ANKRD46--STK3	HAVANA	mRNA	28522	50099	.	+	.	FI_gene_label "STK3^ENSG00000104375.17"  ; ID "ANKRD46--STK3^ENST00000419617.7"  ; Parent "ANKRD46--STK3^STK3^ENSG00000104375.17"  ; ccdsid "CCDS47900.1"  ; exon_id "ENSE00001478384.5"  ; exon_number 1 ; gene_id "ANKRD46--STK3^STK3^ENSG00000104375.17"  ; gene_name STK3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164651.10"  ; havana_transcript "OTTHUMT00000379635.3"  ; hgnc_id "HGNC:11406"  ; level 2 ; orig_coord_info "chr8,98825515,98825540,-"  ; protein_id "ENSP00000390500.2"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ANKRD46--STK3^ENST00000419617.7"  ; transcript_name "STK3-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
ARPC3--LINC02827	HAVANA	gene	1086	8970	.	+	.	FI_gene_label "ARPC3^ENSG00000111229.16"  ; ID "ARPC3--LINC02827^ARPC3^ENSG00000111229.16"  ; ccdsid "CCDS9146.1"  ; exon_id "ENSE00001867869.2"  ; exon_number 1 ; gene_id "ARPC3--LINC02827^ARPC3^ENSG00000111229.16"  ; gene_name ARPC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000134333.5"  ; havana_transcript "OTTHUMT00000259487.3"  ; hgnc_id "HGNC:706"  ; level 2 ; orig_coord_info "chr12,110450255,110450260,-"  ; protein_id "ENSP00000228825.7"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ARPC3--LINC02827^ENST00000228825.12"  ; transcript_name "ARPC3-201"  ; transcript_support_level 1 ; transcript_type protein_coding
ARPC3--LINC02827	HAVANA	mRNA	1086	8970	.	+	.	FI_gene_label "ARPC3^ENSG00000111229.16"  ; ID "ARPC3--LINC02827^ENST00000228825.12"  ; Parent "ARPC3--LINC02827^ARPC3^ENSG00000111229.16"  ; ccdsid "CCDS9146.1"  ; exon_id "ENSE00001867869.2"  ; exon_number 1 ; gene_id "ARPC3--LINC02827^ARPC3^ENSG00000111229.16"  ; gene_name ARPC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000134333.5"  ; havana_transcript "OTTHUMT00000259487.3"  ; hgnc_id "HGNC:706"  ; level 2 ; orig_coord_info "chr12,110450255,110450260,-"  ; protein_id "ENSP00000228825.7"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ARPC3--LINC02827^ENST00000228825.12"  ; transcript_name "ARPC3-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
ETV6--RASA3	HAVANA	gene	13392	15151	.	+	.	FI_gene_label "ETV6^ENSG00000139083.11"  ; ID "ETV6--RASA3^ETV6^ENSG00000139083.11"  ; exon_id "ENSE00002245284.1"  ; exon_number 1 ; gene_id "ETV6--RASA3^ETV6^ENSG00000139083.11"  ; gene_name ETV6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168538.3"  ; havana_transcript "OTTHUMT00000400134.1"  ; hgnc_id "HGNC:3495"  ; level 2 ; orig_coord_info "chr12,11885937,11886026,+"  ; protein_id "ENSP00000266427.3"  ; tag mRNA_start_NF cds_start_NF ; transcript_id "ETV6--RASA3^ENST00000266427.3"  ; transcript_name "ETV6-201"  ; transcript_support_level 3 ; transcript_type protein_coding
ETV6--RASA3	HAVANA	mRNA	13392	15151	.	+	.	FI_gene_label "ETV6^ENSG00000139083.11"  ; ID "ETV6--RASA3^ENST00000266427.3"  ; Parent "ETV6--RASA3^ETV6^ENSG00000139083.11"  ; exon_id "ENSE00002245284.1"  ; exon_number 1 ; gene_id "ETV6--RASA3^ETV6^ENSG00000139083.11"  ; gene_name ETV6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168538.3"  ; havana_transcript "OTTHUMT00000400134.1"  ; hgnc_id "HGNC:3495"  ; level 2 ; orig_coord_info "chr12,11885937,11886026,+"  ; protein_id "ENSP00000266427.3"  ; tag mRNA_start_NF cds_start_NF ; transcript_id "ETV6--RASA3^ENST00000266427.3"  ; transcript_name "ETV6-201"  ; transcript_support_level 3 ; transcript_type protein_coding
L1 and L2 created: 
ETV6--RASA3	HAVANA	gene	21919	49165	.	+	.	FI_gene_label "RASA3^ENSG00000185989.11"  ; ID "ETV6--RASA3^RASA3^ENSG00000185989.11"  ; ccdsid "CCDS32016.1"  ; exon_id "ENSE00001912227.2"  ; exon_number 1 ; gene_id "ETV6--RASA3^RASA3^ENSG00000185989.11"  ; gene_name RASA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000017399.4"  ; havana_transcript "OTTHUMT00000045957.3"  ; hgnc_id "HGNC:20331"  ; level 2 ; orig_coord_info "chr13,114132435,114132489,-"  ; protein_id "ENSP00000335029.7"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ETV6--RASA3^ENST00000334062.8"  ; transcript_name "RASA3-201"  ; transcript_support_level 1 ; transcript_type protein_coding
ETV6--RASA3	HAVANA	mRNA	21919	49165	.	+	.	FI_gene_label "RASA3^ENSG00000185989.11"  ; ID "ETV6--RASA3^ENST00000334062.8"  ; Parent "ETV6--RASA3^RASA3^ENSG00000185989.11"  ; ccdsid "CCDS32016.1"  ; exon_id "ENSE00001912227.2"  ; exon_number 1 ; gene_id "ETV6--RASA3^RASA3^ENSG00000185989.11"  ; gene_name RASA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000017399.4"  ; havana_transcript "OTTHUMT00000045957.3"  ; hgnc_id "HGNC:20331"  ; level 2 ; orig_coord_info "chr13,114132435,114132489,-"  ; protein_id "ENSP00000335029.7"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ETV6--RASA3^ENST00000334062.8"  ; transcript_name "RASA3-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
FHOD3--KIAA1328	HAVANA	gene	1001	37377	.	+	.	FI_gene_label "FHOD3^ENSG00000134775.15"  ; ID "FHOD3--KIAA1328^FHOD3^ENSG00000134775.15"  ; ccdsid "CCDS32816.1"  ; exon_id "ENSE00003647252.1"  ; exon_number 1 ; gene_id "FHOD3--KIAA1328^FHOD3^ENSG00000134775.15"  ; gene_name FHOD3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000182381.5"  ; havana_transcript "OTTHUMT00000460885.3"  ; hgnc_id "HGNC:26178"  ; level 2 ; orig_coord_info "chr18,36297836,36298000,+"  ; protein_id "ENSP00000257209.3"  ; tag basic appris_alternative_2 CCDS ; transcript_id "FHOD3--KIAA1328^ENST00000257209.8"  ; transcript_name "FHOD3-201"  ; transcript_support_level 1 ; transcript_type protein_coding
FHOD3--KIAA1328	HAVANA	mRNA	1001	37377	.	+	.	FI_gene_label "FHOD3^ENSG00000134775.15"  ; ID "FHOD3--KIAA1328^ENST00000257209.8"  ; Parent "FHOD3--KIAA1328^FHOD3^ENSG00000134775.15"  ; ccdsid "CCDS32816.1"  ; exon_id "ENSE00003647252.1"  ; exon_number 1 ; gene_id "FHOD3--KIAA1328^FHOD3^ENSG00000134775.15"  ; gene_name FHOD3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000182381.5"  ; havana_transcript "OTTHUMT00000460885.3"  ; hgnc_id "HGNC:26178"  ; level 2 ; orig_coord_info "chr18,36297836,36298000,+"  ; protein_id "ENSP00000257209.3"  ; tag basic appris_alternative_2 CCDS ; transcript_id "FHOD3--KIAA1328^ENST00000257209.8"  ; transcript_name "FHOD3-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
FHOD3--KIAA1328	HAVANA	gene	40399	66595	.	+	.	FI_gene_label "KIAA1328^ENSG00000150477.15"  ; ID "FHOD3--KIAA1328^KIAA1328^ENSG00000150477.15"  ; ccdsid "CCDS45855.1"  ; exon_id "ENSE00003458646.2"  ; exon_number 1 ; gene_id "FHOD3--KIAA1328^KIAA1328^ENSG00000150477.15"  ; gene_name KIAA1328 ; gene_type protein_coding ; havana_gene "OTTHUMG00000178087.9"  ; havana_transcript "OTTHUMT00000440455.2"  ; hgnc_id "HGNC:29248"  ; level 2 ; orig_coord_info "chr18,36829139,36829196,+"  ; protein_id "ENSP00000280020.5"  ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "FHOD3--KIAA1328^ENST00000280020.10"  ; transcript_name "KIAA1328-201"  ; transcript_support_level 1 ; transcript_type protein_coding
FHOD3--KIAA1328	HAVANA	mRNA	40399	66595	.	+	.	FI_gene_label "KIAA1328^ENSG00000150477.15"  ; ID "FHOD3--KIAA1328^ENST00000280020.10"  ; Parent "FHOD3--KIAA1328^KIAA1328^ENSG00000150477.15"  ; ccdsid "CCDS45855.1"  ; exon_id "ENSE00003458646.2"  ; exon_number 1 ; gene_id "FHOD3--KIAA1328^KIAA1328^ENSG00000150477.15"  ; gene_name KIAA1328 ; gene_type protein_coding ; havana_gene "OTTHUMG00000178087.9"  ; havana_transcript "OTTHUMT00000440455.2"  ; hgnc_id "HGNC:29248"  ; level 2 ; orig_coord_info "chr18,36829139,36829196,+"  ; protein_id "ENSP00000280020.5"  ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "FHOD3--KIAA1328^ENST00000280020.10"  ; transcript_name "KIAA1328-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
NR2F6--CILP2	HAVANA	gene	1001	7093	.	+	.	FI_gene_label "NR2F6^ENSG00000160113.6"  ; ID "NR2F6--CILP2^NR2F6^ENSG00000160113.6"  ; ccdsid "CCDS12352.1"  ; exon_id "ENSE00001049891.5"  ; exon_number 1 ; gene_id "NR2F6--CILP2^NR2F6^ENSG00000160113.6"  ; gene_name NR2F6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000182728.2"  ; havana_transcript "OTTHUMT00000463325.1"  ; hgnc_id "HGNC:7977"  ; level 2 ; orig_coord_info "chr19,17244943,17245220,-"  ; protein_id "ENSP00000291442.2"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NR2F6--CILP2^ENST00000291442.4"  ; transcript_name "NR2F6-201"  ; transcript_support_level 1 ; transcript_type protein_coding
NR2F6--CILP2	HAVANA	mRNA	1001	7093	.	+	.	FI_gene_label "NR2F6^ENSG00000160113.6"  ; ID "NR2F6--CILP2^ENST00000291442.4"  ; Parent "NR2F6--CILP2^NR2F6^ENSG00000160113.6"  ; ccdsid "CCDS12352.1"  ; exon_id "ENSE00001049891.5"  ; exon_number 1 ; gene_id "NR2F6--CILP2^NR2F6^ENSG00000160113.6"  ; gene_name NR2F6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000182728.2"  ; havana_transcript "OTTHUMT00000463325.1"  ; hgnc_id "HGNC:7977"  ; level 2 ; orig_coord_info "chr19,17244943,17245220,-"  ; protein_id "ENSP00000291442.2"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NR2F6--CILP2^ENST00000291442.4"  ; transcript_name "NR2F6-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
NR2F6--CILP2	HAVANA	gene	10111	18112	.	+	.	FI_gene_label "CILP2^ENSG00000160161.9"  ; ID "NR2F6--CILP2^CILP2^ENSG00000160161.9"  ; ccdsid "CCDS12405.1"  ; exon_id "ENSE00003702834.1"  ; exon_number 1 ; gene_id "NR2F6--CILP2^CILP2^ENSG00000160161.9"  ; gene_name CILP2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000182148.4"  ; havana_transcript "OTTHUMT00000459738.3"  ; hgnc_id "HGNC:24213"  ; level 2 ; orig_coord_info "chr19,19538350,19538413,+"  ; protein_id "ENSP00000291495.3"  ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "NR2F6--CILP2^ENST00000291495.5"  ; transcript_name "CILP2-201"  ; transcript_support_level 1 ; transcript_type protein_coding
NR2F6--CILP2	HAVANA	mRNA	10111	18112	.	+	.	FI_gene_label "CILP2^ENSG00000160161.9"  ; ID "NR2F6--CILP2^ENST00000291495.5"  ; Parent "NR2F6--CILP2^CILP2^ENSG00000160161.9"  ; ccdsid "CCDS12405.1"  ; exon_id "ENSE00003702834.1"  ; exon_number 1 ; gene_id "NR2F6--CILP2^CILP2^ENSG00000160161.9"  ; gene_name CILP2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000182148.4"  ; havana_transcript "OTTHUMT00000459738.3"  ; hgnc_id "HGNC:24213"  ; level 2 ; orig_coord_info "chr19,19538350,19538413,+"  ; protein_id "ENSP00000291495.3"  ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "NR2F6--CILP2^ENST00000291495.5"  ; transcript_name "CILP2-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
PCDHGB2--PCDHGA10	HAVANA	gene	6778	16231	.	+	.	FI_gene_label "PCDHGA10^ENSG00000253846.2"  ; ID "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2"  ; ccdsid "CCDS47292.1"  ; exon_id "ENSE00001792208.1"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2"  ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2"  ; havana_transcript "OTTHUMT00000374747.1"  ; hgnc_id "HGNC:8697"  ; level 2 ; orig_coord_info "chr5,141413176,141415611,+"  ; protein_id "ENSP00000381611.2"  ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000398610.2"  ; transcript_name "PCDHGA10-201"  ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA10	HAVANA	mRNA	6778	16231	.	+	.	FI_gene_label "PCDHGA10^ENSG00000253846.2"  ; ID "PCDHGB2--PCDHGA10^ENST00000398610.2"  ; Parent "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2"  ; ccdsid "CCDS47292.1"  ; exon_id "ENSE00001792208.1"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2"  ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2"  ; havana_transcript "OTTHUMT00000374747.1"  ; hgnc_id "HGNC:8697"  ; level 2 ; orig_coord_info "chr5,141413176,141415611,+"  ; protein_id "ENSP00000381611.2"  ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000398610.2"  ; transcript_name "PCDHGA10-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
PCDHGB2--PCDHGA10	HAVANA	gene	1001	3588	.	+	.	FI_gene_label "PCDHGB2^ENSG00000253910.2"  ; ID "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2"  ; ccdsid "CCDS75332.1"  ; exon_id "ENSE00003749890.1"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2"  ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2"  ; havana_transcript "OTTHUMT00000476685.1"  ; hgnc_id "HGNC:8709"  ; level 2 ; orig_coord_info "chr5,141360136,141362568,+"  ; protein_id "ENSP00000481512.1"  ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000622527.1"  ; transcript_name "PCDHGB2-202"  ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA10	HAVANA	mRNA	1001	3588	.	+	.	FI_gene_label "PCDHGB2^ENSG00000253910.2"  ; ID "PCDHGB2--PCDHGA10^ENST00000622527.1"  ; Parent "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2"  ; ccdsid "CCDS75332.1"  ; exon_id "ENSE00003749890.1"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2"  ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2"  ; havana_transcript "OTTHUMT00000476685.1"  ; hgnc_id "HGNC:8709"  ; level 2 ; orig_coord_info "chr5,141360136,141362568,+"  ; protein_id "ENSP00000481512.1"  ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000622527.1"  ; transcript_name "PCDHGB2-202"  ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created: 
PCDHGB2--PCDHGA11	HAVANA	gene	6593	15398	.	+	.	FI_gene_label "PCDHGA11^ENSG00000253873.6"  ; ID "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6"  ; ccdsid "CCDS47294.1"  ; exon_id "ENSE00001533810.3"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6"  ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3"  ; havana_transcript "OTTHUMT00000376974.3"  ; hgnc_id "HGNC:8698"  ; level 2 ; orig_coord_info "chr5,141421228,141423660,+"  ; protein_id "ENSP00000381589.2"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000398587.7"  ; transcript_name "PCDHGA11-201"  ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA11	HAVANA	mRNA	6593	15398	.	+	.	FI_gene_label "PCDHGA11^ENSG00000253873.6"  ; ID "PCDHGB2--PCDHGA11^ENST00000398587.7"  ; Parent "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6"  ; ccdsid "CCDS47294.1"  ; exon_id "ENSE00001533810.3"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6"  ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3"  ; havana_transcript "OTTHUMT00000376974.3"  ; hgnc_id "HGNC:8698"  ; level 2 ; orig_coord_info "chr5,141421228,141423660,+"  ; protein_id "ENSP00000381589.2"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000398587.7"  ; transcript_name "PCDHGA11-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
PCDHGB2--PCDHGA11	HAVANA	gene	1001	3588	.	+	.	FI_gene_label "PCDHGB2^ENSG00000253910.2"  ; ID "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2"  ; ccdsid "CCDS75332.1"  ; exon_id "ENSE00003749890.1"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2"  ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2"  ; havana_transcript "OTTHUMT00000476685.1"  ; hgnc_id "HGNC:8709"  ; level 2 ; orig_coord_info "chr5,141360136,141362568,+"  ; protein_id "ENSP00000481512.1"  ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000622527.1"  ; transcript_name "PCDHGB2-202"  ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA11	HAVANA	mRNA	1001	3588	.	+	.	FI_gene_label "PCDHGB2^ENSG00000253910.2"  ; ID "PCDHGB2--PCDHGA11^ENST00000622527.1"  ; Parent "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2"  ; ccdsid "CCDS75332.1"  ; exon_id "ENSE00003749890.1"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2"  ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2"  ; havana_transcript "OTTHUMT00000476685.1"  ; hgnc_id "HGNC:8709"  ; level 2 ; orig_coord_info "chr5,141360136,141362568,+"  ; protein_id "ENSP00000481512.1"  ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000622527.1"  ; transcript_name "PCDHGB2-202"  ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created: 
PCDHGB2--PCDHGA12	HAVANA	gene	6589	14481	.	+	.	FI_gene_label "PCDHGA12^ENSG00000253159.3"  ; ID "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3"  ; ccdsid "CCDS4260.1"  ; exon_id "ENSE00000814269.5"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3"  ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6"  ; havana_transcript "OTTHUMT00000251806.3"  ; hgnc_id "HGNC:8699"  ; level 2 ; orig_coord_info "chr5,141430760,141433183,+"  ; protein_id "ENSP00000252085.3"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000252085.4"  ; transcript_name "PCDHGA12-201"  ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA12	HAVANA	mRNA	6589	14481	.	+	.	FI_gene_label "PCDHGA12^ENSG00000253159.3"  ; ID "PCDHGB2--PCDHGA12^ENST00000252085.4"  ; Parent "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3"  ; ccdsid "CCDS4260.1"  ; exon_id "ENSE00000814269.5"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3"  ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6"  ; havana_transcript "OTTHUMT00000251806.3"  ; hgnc_id "HGNC:8699"  ; level 2 ; orig_coord_info "chr5,141430760,141433183,+"  ; protein_id "ENSP00000252085.3"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000252085.4"  ; transcript_name "PCDHGA12-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
PCDHGB2--PCDHGA12	HAVANA	gene	1001	3588	.	+	.	FI_gene_label "PCDHGB2^ENSG00000253910.2"  ; ID "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2"  ; ccdsid "CCDS75332.1"  ; exon_id "ENSE00003749890.1"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2"  ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2"  ; havana_transcript "OTTHUMT00000476685.1"  ; hgnc_id "HGNC:8709"  ; level 2 ; orig_coord_info "chr5,141360136,141362568,+"  ; protein_id "ENSP00000481512.1"  ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000622527.1"  ; transcript_name "PCDHGB2-202"  ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA12	HAVANA	mRNA	1001	3588	.	+	.	FI_gene_label "PCDHGB2^ENSG00000253910.2"  ; ID "PCDHGB2--PCDHGA12^ENST00000622527.1"  ; Parent "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2"  ; ccdsid "CCDS75332.1"  ; exon_id "ENSE00003749890.1"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2"  ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2"  ; havana_transcript "OTTHUMT00000476685.1"  ; hgnc_id "HGNC:8709"  ; level 2 ; orig_coord_info "chr5,141360136,141362568,+"  ; protein_id "ENSP00000481512.1"  ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000622527.1"  ; transcript_name "PCDHGB2-202"  ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created: 
PCDHGB2--PCDHGA8	HAVANA	gene	9065	18245	.	+	.	FI_gene_label "PCDHGA8^ENSG00000253767.3"  ; ID "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3"  ; ccdsid "CCDS47291.1"  ; exon_id "ENSE00001533882.3"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3"  ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2"  ; havana_transcript "OTTHUMT00000376972.1"  ; hgnc_id "HGNC:8706"  ; level 2 ; orig_coord_info "chr5,141392814,141395237,+"  ; protein_id "ENSP00000381605.2"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000398604.3"  ; transcript_name "PCDHGA8-201"  ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA8	HAVANA	mRNA	9065	18245	.	+	.	FI_gene_label "PCDHGA8^ENSG00000253767.3"  ; ID "PCDHGB2--PCDHGA8^ENST00000398604.3"  ; Parent "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3"  ; ccdsid "CCDS47291.1"  ; exon_id "ENSE00001533882.3"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3"  ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2"  ; havana_transcript "OTTHUMT00000376972.1"  ; hgnc_id "HGNC:8706"  ; level 2 ; orig_coord_info "chr5,141392814,141395237,+"  ; protein_id "ENSP00000381605.2"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000398604.3"  ; transcript_name "PCDHGA8-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
PCDHGB2--PCDHGA8	HAVANA	gene	1001	3588	.	+	.	FI_gene_label "PCDHGB2^ENSG00000253910.2"  ; ID "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2"  ; ccdsid "CCDS75332.1"  ; exon_id "ENSE00003749890.1"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2"  ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2"  ; havana_transcript "OTTHUMT00000476685.1"  ; hgnc_id "HGNC:8709"  ; level 2 ; orig_coord_info "chr5,141360136,141362568,+"  ; protein_id "ENSP00000481512.1"  ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000622527.1"  ; transcript_name "PCDHGB2-202"  ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA8	HAVANA	mRNA	1001	3588	.	+	.	FI_gene_label "PCDHGB2^ENSG00000253910.2"  ; ID "PCDHGB2--PCDHGA8^ENST00000622527.1"  ; Parent "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2"  ; ccdsid "CCDS75332.1"  ; exon_id "ENSE00003749890.1"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2"  ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2"  ; havana_transcript "OTTHUMT00000476685.1"  ; hgnc_id "HGNC:8709"  ; level 2 ; orig_coord_info "chr5,141360136,141362568,+"  ; protein_id "ENSP00000481512.1"  ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000622527.1"  ; transcript_name "PCDHGB2-202"  ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created: 
PCDHGB2--PCDHGA9	HAVANA	gene	6610	14337	.	+	.	FI_gene_label "PCDHGA9^ENSG00000261934.2"  ; ID "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2"  ; ccdsid "CCDS58981.1"  ; exon_id "ENSE00002639131.1"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2"  ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2"  ; havana_transcript "OTTHUMT00000437105.1"  ; hgnc_id "HGNC:8707"  ; level 2 ; orig_coord_info "chr5,141402953,141405376,+"  ; protein_id "ENSP00000460274.1"  ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000573521.1"  ; transcript_name "PCDHGA9-201"  ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA9	HAVANA	mRNA	6610	14337	.	+	.	FI_gene_label "PCDHGA9^ENSG00000261934.2"  ; ID "PCDHGB2--PCDHGA9^ENST00000573521.1"  ; Parent "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2"  ; ccdsid "CCDS58981.1"  ; exon_id "ENSE00002639131.1"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2"  ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2"  ; havana_transcript "OTTHUMT00000437105.1"  ; hgnc_id "HGNC:8707"  ; level 2 ; orig_coord_info "chr5,141402953,141405376,+"  ; protein_id "ENSP00000460274.1"  ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000573521.1"  ; transcript_name "PCDHGA9-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
PCDHGB2--PCDHGA9	HAVANA	gene	1001	3588	.	+	.	FI_gene_label "PCDHGB2^ENSG00000253910.2"  ; ID "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2"  ; ccdsid "CCDS75332.1"  ; exon_id "ENSE00003749890.1"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2"  ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2"  ; havana_transcript "OTTHUMT00000476685.1"  ; hgnc_id "HGNC:8709"  ; level 2 ; orig_coord_info "chr5,141360136,141362568,+"  ; protein_id "ENSP00000481512.1"  ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000622527.1"  ; transcript_name "PCDHGB2-202"  ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA9	HAVANA	mRNA	1001	3588	.	+	.	FI_gene_label "PCDHGB2^ENSG00000253910.2"  ; ID "PCDHGB2--PCDHGA9^ENST00000622527.1"  ; Parent "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2"  ; ccdsid "CCDS75332.1"  ; exon_id "ENSE00003749890.1"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2"  ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2"  ; havana_transcript "OTTHUMT00000476685.1"  ; hgnc_id "HGNC:8709"  ; level 2 ; orig_coord_info "chr5,141360136,141362568,+"  ; protein_id "ENSP00000481512.1"  ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000622527.1"  ; transcript_name "PCDHGB2-202"  ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created: 
PCDHGB2--PCDHGB6	HAVANA	gene	6771	16370	.	+	.	FI_gene_label "PCDHGB6^ENSG00000253305.2"  ; ID "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2"  ; ccdsid "CCDS54929.1"  ; exon_id "ENSE00002122685.1"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2"  ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2"  ; havana_transcript "OTTHUMT00000374746.1"  ; hgnc_id "HGNC:8713"  ; level 2 ; orig_coord_info "chr5,141408203,141410620,+"  ; protein_id "ENSP00000428603.1"  ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000520790.1"  ; transcript_name "PCDHGB6-201"  ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGB6	HAVANA	mRNA	6771	16370	.	+	.	FI_gene_label "PCDHGB6^ENSG00000253305.2"  ; ID "PCDHGB2--PCDHGB6^ENST00000520790.1"  ; Parent "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2"  ; ccdsid "CCDS54929.1"  ; exon_id "ENSE00002122685.1"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2"  ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2"  ; havana_transcript "OTTHUMT00000374746.1"  ; hgnc_id "HGNC:8713"  ; level 2 ; orig_coord_info "chr5,141408203,141410620,+"  ; protein_id "ENSP00000428603.1"  ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000520790.1"  ; transcript_name "PCDHGB6-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
PCDHGB2--PCDHGB6	HAVANA	gene	1001	3588	.	+	.	FI_gene_label "PCDHGB2^ENSG00000253910.2"  ; ID "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2"  ; ccdsid "CCDS75332.1"  ; exon_id "ENSE00003749890.1"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2"  ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2"  ; havana_transcript "OTTHUMT00000476685.1"  ; hgnc_id "HGNC:8709"  ; level 2 ; orig_coord_info "chr5,141360136,141362568,+"  ; protein_id "ENSP00000481512.1"  ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000622527.1"  ; transcript_name "PCDHGB2-202"  ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGB6	HAVANA	mRNA	1001	3588	.	+	.	FI_gene_label "PCDHGB2^ENSG00000253910.2"  ; ID "PCDHGB2--PCDHGB6^ENST00000622527.1"  ; Parent "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2"  ; ccdsid "CCDS75332.1"  ; exon_id "ENSE00003749890.1"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2"  ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2"  ; havana_transcript "OTTHUMT00000476685.1"  ; hgnc_id "HGNC:8709"  ; level 2 ; orig_coord_info "chr5,141360136,141362568,+"  ; protein_id "ENSP00000481512.1"  ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000622527.1"  ; transcript_name "PCDHGB2-202"  ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created: 
PCDHGB2--PCDHGB7	HAVANA	gene	6621	14550	.	+	.	FI_gene_label "PCDHGB7^ENSG00000254122.3"  ; ID "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3"  ; ccdsid "CCDS47293.1"  ; exon_id "ENSE00001533845.4"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3"  ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2"  ; havana_transcript "OTTHUMT00000376973.2"  ; hgnc_id "HGNC:8714"  ; level 2 ; orig_coord_info "chr5,141417860,141420274,+"  ; protein_id "ENSP00000381594.3"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000398594.4"  ; transcript_name "PCDHGB7-201"  ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGB7	HAVANA	mRNA	6621	14550	.	+	.	FI_gene_label "PCDHGB7^ENSG00000254122.3"  ; ID "PCDHGB2--PCDHGB7^ENST00000398594.4"  ; Parent "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3"  ; ccdsid "CCDS47293.1"  ; exon_id "ENSE00001533845.4"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3"  ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2"  ; havana_transcript "OTTHUMT00000376973.2"  ; hgnc_id "HGNC:8714"  ; level 2 ; orig_coord_info "chr5,141417860,141420274,+"  ; protein_id "ENSP00000381594.3"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000398594.4"  ; transcript_name "PCDHGB7-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
PCDHGB2--PCDHGB7	HAVANA	gene	1001	3588	.	+	.	FI_gene_label "PCDHGB2^ENSG00000253910.2"  ; ID "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2"  ; ccdsid "CCDS75332.1"  ; exon_id "ENSE00003749890.1"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2"  ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2"  ; havana_transcript "OTTHUMT00000476685.1"  ; hgnc_id "HGNC:8709"  ; level 2 ; orig_coord_info "chr5,141360136,141362568,+"  ; protein_id "ENSP00000481512.1"  ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000622527.1"  ; transcript_name "PCDHGB2-202"  ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGB7	HAVANA	mRNA	1001	3588	.	+	.	FI_gene_label "PCDHGB2^ENSG00000253910.2"  ; ID "PCDHGB2--PCDHGB7^ENST00000622527.1"  ; Parent "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2"  ; ccdsid "CCDS75332.1"  ; exon_id "ENSE00003749890.1"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2"  ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2"  ; havana_transcript "OTTHUMT00000476685.1"  ; hgnc_id "HGNC:8709"  ; level 2 ; orig_coord_info "chr5,141360136,141362568,+"  ; protein_id "ENSP00000481512.1"  ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000622527.1"  ; transcript_name "PCDHGB2-202"  ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created: 
PCDHGB2--PCDHGC3	HAVANA	gene	6608	16794	.	+	.	FI_gene_label "PCDHGC3^ENSG00000240184.7"  ; ID "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7"  ; ccdsid "CCDS4261.1"  ; exon_id "ENSE00001199459.7"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7"  ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8"  ; havana_transcript "OTTHUMT00000251808.5"  ; hgnc_id "HGNC:8716"  ; level 2 ; orig_coord_info "chr5,141476117,141478546,+"  ; protein_id "ENSP00000312070.3"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000308177.5"  ; transcript_name "PCDHGC3-201"  ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGC3	HAVANA	mRNA	6608	16794	.	+	.	FI_gene_label "PCDHGC3^ENSG00000240184.7"  ; ID "PCDHGB2--PCDHGC3^ENST00000308177.5"  ; Parent "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7"  ; ccdsid "CCDS4261.1"  ; exon_id "ENSE00001199459.7"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7"  ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8"  ; havana_transcript "OTTHUMT00000251808.5"  ; hgnc_id "HGNC:8716"  ; level 2 ; orig_coord_info "chr5,141476117,141478546,+"  ; protein_id "ENSP00000312070.3"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000308177.5"  ; transcript_name "PCDHGC3-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
PCDHGB2--PCDHGC3	HAVANA	gene	1001	3588	.	+	.	FI_gene_label "PCDHGB2^ENSG00000253910.2"  ; ID "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2"  ; ccdsid "CCDS75332.1"  ; exon_id "ENSE00003749890.1"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2"  ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2"  ; havana_transcript "OTTHUMT00000476685.1"  ; hgnc_id "HGNC:8709"  ; level 2 ; orig_coord_info "chr5,141360136,141362568,+"  ; protein_id "ENSP00000481512.1"  ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000622527.1"  ; transcript_name "PCDHGB2-202"  ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGC3	HAVANA	mRNA	1001	3588	.	+	.	FI_gene_label "PCDHGB2^ENSG00000253910.2"  ; ID "PCDHGB2--PCDHGC3^ENST00000622527.1"  ; Parent "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2"  ; ccdsid "CCDS75332.1"  ; exon_id "ENSE00003749890.1"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2"  ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2"  ; havana_transcript "OTTHUMT00000476685.1"  ; hgnc_id "HGNC:8709"  ; level 2 ; orig_coord_info "chr5,141360136,141362568,+"  ; protein_id "ENSP00000481512.1"  ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000622527.1"  ; transcript_name "PCDHGB2-202"  ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created: 
PCDHGB2--PCDHGC4	HAVANA	gene	6766	14562	.	+	.	FI_gene_label "PCDHGC4^ENSG00000242419.5"  ; ID "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5"  ; ccdsid "CCDS4262.1"  ; exon_id "ENSE00001162305.2"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5"  ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4"  ; havana_transcript "OTTHUMT00000251820.2"  ; hgnc_id "HGNC:8717"  ; level 2 ; orig_coord_info "chr5,141485174,141487615,+"  ; protein_id "ENSP00000306918.1"  ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000306593.1"  ; transcript_name "PCDHGC4-201"  ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGC4	HAVANA	mRNA	6766	14562	.	+	.	FI_gene_label "PCDHGC4^ENSG00000242419.5"  ; ID "PCDHGB2--PCDHGC4^ENST00000306593.1"  ; Parent "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5"  ; ccdsid "CCDS4262.1"  ; exon_id "ENSE00001162305.2"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5"  ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4"  ; havana_transcript "OTTHUMT00000251820.2"  ; hgnc_id "HGNC:8717"  ; level 2 ; orig_coord_info "chr5,141485174,141487615,+"  ; protein_id "ENSP00000306918.1"  ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000306593.1"  ; transcript_name "PCDHGC4-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
PCDHGB2--PCDHGC4	HAVANA	gene	1001	3588	.	+	.	FI_gene_label "PCDHGB2^ENSG00000253910.2"  ; ID "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2"  ; ccdsid "CCDS75332.1"  ; exon_id "ENSE00003749890.1"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2"  ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2"  ; havana_transcript "OTTHUMT00000476685.1"  ; hgnc_id "HGNC:8709"  ; level 2 ; orig_coord_info "chr5,141360136,141362568,+"  ; protein_id "ENSP00000481512.1"  ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000622527.1"  ; transcript_name "PCDHGB2-202"  ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGC4	HAVANA	mRNA	1001	3588	.	+	.	FI_gene_label "PCDHGB2^ENSG00000253910.2"  ; ID "PCDHGB2--PCDHGC4^ENST00000622527.1"  ; Parent "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2"  ; ccdsid "CCDS75332.1"  ; exon_id "ENSE00003749890.1"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2"  ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2"  ; havana_transcript "OTTHUMT00000476685.1"  ; hgnc_id "HGNC:8709"  ; level 2 ; orig_coord_info "chr5,141360136,141362568,+"  ; protein_id "ENSP00000481512.1"  ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000622527.1"  ; transcript_name "PCDHGB2-202"  ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created: 
PCDHGB2--PCDHGC5	HAVANA	gene	6589	14614	.	+	.	FI_gene_label "PCDHGC5^ENSG00000240764.4"  ; ID "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4"  ; ccdsid "CCDS4263.1"  ; exon_id "ENSE00000766474.3"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4"  ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2"  ; havana_transcript "OTTHUMT00000251819.2"  ; hgnc_id "HGNC:8718"  ; level 2 ; orig_coord_info "chr5,141489241,141491700,+"  ; protein_id "ENSP00000252087.2"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000252087.3"  ; transcript_name "PCDHGC5-201"  ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGC5	HAVANA	mRNA	6589	14614	.	+	.	FI_gene_label "PCDHGC5^ENSG00000240764.4"  ; ID "PCDHGB2--PCDHGC5^ENST00000252087.3"  ; Parent "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4"  ; ccdsid "CCDS4263.1"  ; exon_id "ENSE00000766474.3"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4"  ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2"  ; havana_transcript "OTTHUMT00000251819.2"  ; hgnc_id "HGNC:8718"  ; level 2 ; orig_coord_info "chr5,141489241,141491700,+"  ; protein_id "ENSP00000252087.2"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000252087.3"  ; transcript_name "PCDHGC5-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
PCDHGB2--PCDHGC5	HAVANA	gene	1001	3588	.	+	.	FI_gene_label "PCDHGB2^ENSG00000253910.2"  ; ID "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2"  ; ccdsid "CCDS75332.1"  ; exon_id "ENSE00003749890.1"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2"  ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2"  ; havana_transcript "OTTHUMT00000476685.1"  ; hgnc_id "HGNC:8709"  ; level 2 ; orig_coord_info "chr5,141360136,141362568,+"  ; protein_id "ENSP00000481512.1"  ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000622527.1"  ; transcript_name "PCDHGB2-202"  ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGC5	HAVANA	mRNA	1001	3588	.	+	.	FI_gene_label "PCDHGB2^ENSG00000253910.2"  ; ID "PCDHGB2--PCDHGC5^ENST00000622527.1"  ; Parent "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2"  ; ccdsid "CCDS75332.1"  ; exon_id "ENSE00003749890.1"  ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2"  ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2"  ; havana_transcript "OTTHUMT00000476685.1"  ; hgnc_id "HGNC:8709"  ; level 2 ; orig_coord_info "chr5,141360136,141362568,+"  ; protein_id "ENSP00000481512.1"  ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000622527.1"  ; transcript_name "PCDHGB2-202"  ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created: 
RIOK3--LINC01894	HAVANA	gene	1001	14212	.	+	.	FI_gene_label "RIOK3^ENSG00000101782.15"  ; ID "RIOK3--LINC01894^RIOK3^ENSG00000101782.15"  ; ccdsid "CCDS11877.1"  ; exon_id "ENSE00003621281.1"  ; exon_number 1 ; gene_id "RIOK3--LINC01894^RIOK3^ENSG00000101782.15"  ; gene_name RIOK3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000131813.6"  ; havana_transcript "OTTHUMT00000254756.2"  ; hgnc_id "HGNC:11451"  ; level 2 ; orig_coord_info "chr18,23453440,23453502,+"  ; protein_id "ENSP00000341874.3"  ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "RIOK3--LINC01894^ENST00000339486.8"  ; transcript_name "RIOK3-201"  ; transcript_support_level 1 ; transcript_type protein_coding
RIOK3--LINC01894	HAVANA	mRNA	1001	14212	.	+	.	FI_gene_label "RIOK3^ENSG00000101782.15"  ; ID "RIOK3--LINC01894^ENST00000339486.8"  ; Parent "RIOK3--LINC01894^RIOK3^ENSG00000101782.15"  ; ccdsid "CCDS11877.1"  ; exon_id "ENSE00003621281.1"  ; exon_number 1 ; gene_id "RIOK3--LINC01894^RIOK3^ENSG00000101782.15"  ; gene_name RIOK3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000131813.6"  ; havana_transcript "OTTHUMT00000254756.2"  ; hgnc_id "HGNC:11451"  ; level 2 ; orig_coord_info "chr18,23453440,23453502,+"  ; protein_id "ENSP00000341874.3"  ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "RIOK3--LINC01894^ENST00000339486.8"  ; transcript_name "RIOK3-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
TAF4B--B4GALT6	HAVANA	gene	24252	34007	.	+	.	FI_gene_label "B4GALT6^ENSG00000118276.11"  ; ID "TAF4B--B4GALT6^B4GALT6^ENSG00000118276.11"  ; ccdsid "CCDS82245.1"  ; exon_id "ENSE00001683600.2"  ; exon_number 1 ; gene_id "TAF4B--B4GALT6^B4GALT6^ENSG00000118276.11"  ; gene_name B4GALT6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000131980.4"  ; havana_transcript "OTTHUMT00000447517.1"  ; hgnc_id "HGNC:929"  ; level 1 ; orig_coord_info "chr18,31684312,31684426,-"  ; protein_id "ENSP00000237019.7"  ; tag basic exp_conf CCDS ; transcript_id "TAF4B--B4GALT6^ENST00000237019.11"  ; transcript_name "B4GALT6-201"  ; transcript_support_level 1 ; transcript_type protein_coding
TAF4B--B4GALT6	HAVANA	mRNA	24252	34007	.	+	.	FI_gene_label "B4GALT6^ENSG00000118276.11"  ; ID "TAF4B--B4GALT6^ENST00000237019.11"  ; Parent "TAF4B--B4GALT6^B4GALT6^ENSG00000118276.11"  ; ccdsid "CCDS82245.1"  ; exon_id "ENSE00001683600.2"  ; exon_number 1 ; gene_id "TAF4B--B4GALT6^B4GALT6^ENSG00000118276.11"  ; gene_name B4GALT6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000131980.4"  ; havana_transcript "OTTHUMT00000447517.1"  ; hgnc_id "HGNC:929"  ; level 1 ; orig_coord_info "chr18,31684312,31684426,-"  ; protein_id "ENSP00000237019.7"  ; tag basic exp_conf CCDS ; transcript_id "TAF4B--B4GALT6^ENST00000237019.11"  ; transcript_name "B4GALT6-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
TAF4B--B4GALT6	HAVANA	gene	1001	19992	.	+	.	FI_gene_label "TAF4B^ENSG00000141384.13"  ; ID "TAF4B--B4GALT6^TAF4B^ENSG00000141384.13"  ; ccdsid "CCDS42421.1"  ; exon_id "ENSE00002711117.2"  ; exon_number 1 ; gene_id "TAF4B--B4GALT6^TAF4B^ENSG00000141384.13"  ; gene_name TAF4B ; gene_type protein_coding ; havana_gene "OTTHUMG00000179429.3"  ; havana_transcript "OTTHUMT00000446260.3"  ; hgnc_id "HGNC:11538"  ; level 2 ; orig_coord_info "chr18,26226934,26227276,+"  ; protein_id "ENSP00000269142.6"  ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "TAF4B--B4GALT6^ENST00000269142.10"  ; transcript_name "TAF4B-201"  ; transcript_support_level 1 ; transcript_type protein_coding
TAF4B--B4GALT6	HAVANA	mRNA	1001	19992	.	+	.	FI_gene_label "TAF4B^ENSG00000141384.13"  ; ID "TAF4B--B4GALT6^ENST00000269142.10"  ; Parent "TAF4B--B4GALT6^TAF4B^ENSG00000141384.13"  ; ccdsid "CCDS42421.1"  ; exon_id "ENSE00002711117.2"  ; exon_number 1 ; gene_id "TAF4B--B4GALT6^TAF4B^ENSG00000141384.13"  ; gene_name TAF4B ; gene_type protein_coding ; havana_gene "OTTHUMG00000179429.3"  ; havana_transcript "OTTHUMT00000446260.3"  ; hgnc_id "HGNC:11538"  ; level 2 ; orig_coord_info "chr18,26226934,26227276,+"  ; protein_id "ENSP00000269142.6"  ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "TAF4B--B4GALT6^ENST00000269142.10"  ; transcript_name "TAF4B-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
TLK2--AC240565.1	HAVANA	gene	4784	35054	.	+	.	FI_gene_label "TLK2^ENSG00000146872.18"  ; ID "TLK2--AC240565.1^TLK2^ENSG00000146872.18"  ; ccdsid "CCDS62283.1"  ; exon_id "ENSE00003568961.1"  ; exon_number 2 ; gene_id "TLK2--AC240565.1^TLK2^ENSG00000146872.18"  ; gene_name TLK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179176.3"  ; havana_transcript "OTTHUMT00000445140.1"  ; hgnc_id "HGNC:11842"  ; level 2 ; orig_coord_info "chr17,62481126,62481206,+"  ; protein_id "ENSP00000316512.9"  ; tag basic CCDS ; transcript_id "TLK2--AC240565.1^ENST00000326270.13"  ; transcript_name "TLK2-201"  ; transcript_support_level 1 ; transcript_type protein_coding
TLK2--AC240565.1	HAVANA	mRNA	4784	35054	.	+	.	FI_gene_label "TLK2^ENSG00000146872.18"  ; ID "TLK2--AC240565.1^ENST00000326270.13"  ; Parent "TLK2--AC240565.1^TLK2^ENSG00000146872.18"  ; ccdsid "CCDS62283.1"  ; exon_id "ENSE00003568961.1"  ; exon_number 2 ; gene_id "TLK2--AC240565.1^TLK2^ENSG00000146872.18"  ; gene_name TLK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179176.3"  ; havana_transcript "OTTHUMT00000445140.1"  ; hgnc_id "HGNC:11842"  ; level 2 ; orig_coord_info "chr17,62481126,62481206,+"  ; protein_id "ENSP00000316512.9"  ; tag basic CCDS ; transcript_id "TLK2--AC240565.1^ENST00000326270.13"  ; transcript_name "TLK2-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
UBE2O--AANAT	HAVANA	gene	17796	25377	.	+	.	FI_gene_label "AANAT^ENSG00000129673.10"  ; ID "UBE2O--AANAT^AANAT^ENSG00000129673.10"  ; ccdsid "CCDS54169.1"  ; exon_id "ENSE00001465636.1"  ; exon_number 4 ; gene_id "UBE2O--AANAT^AANAT^ENSG00000129673.10"  ; gene_name AANAT ; gene_type protein_coding ; havana_gene "OTTHUMG00000180179.2"  ; havana_transcript "OTTHUMT00000450129.1"  ; hgnc_id "HGNC:19"  ; level 2 ; orig_coord_info "chr17,76466173,76466232,+"  ; protein_id "ENSP00000250615.2"  ; tag basic appris_alternative_2 CCDS ; transcript_id "UBE2O--AANAT^ENST00000250615.7"  ; transcript_name "AANAT-201"  ; transcript_support_level 1 ; transcript_type protein_coding
UBE2O--AANAT	HAVANA	mRNA	17796	25377	.	+	.	FI_gene_label "AANAT^ENSG00000129673.10"  ; ID "UBE2O--AANAT^ENST00000250615.7"  ; Parent "UBE2O--AANAT^AANAT^ENSG00000129673.10"  ; ccdsid "CCDS54169.1"  ; exon_id "ENSE00001465636.1"  ; exon_number 4 ; gene_id "UBE2O--AANAT^AANAT^ENSG00000129673.10"  ; gene_name AANAT ; gene_type protein_coding ; havana_gene "OTTHUMG00000180179.2"  ; havana_transcript "OTTHUMT00000450129.1"  ; hgnc_id "HGNC:19"  ; level 2 ; orig_coord_info "chr17,76466173,76466232,+"  ; protein_id "ENSP00000250615.2"  ; tag basic appris_alternative_2 CCDS ; transcript_id "UBE2O--AANAT^ENST00000250615.7"  ; transcript_name "AANAT-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
UBE2O--AANAT	HAVANA	gene	1001	14795	.	+	.	FI_gene_label "UBE2O^ENSG00000175931.13"  ; ID "UBE2O--AANAT^UBE2O^ENSG00000175931.13"  ; ccdsid "CCDS32742.1"  ; exon_id "ENSE00001259738.6"  ; exon_number 1 ; gene_id "UBE2O--AANAT^UBE2O^ENSG00000175931.13"  ; gene_name UBE2O ; gene_type protein_coding ; havana_gene "OTTHUMG00000180178.3"  ; havana_transcript "OTTHUMT00000450123.2"  ; hgnc_id "HGNC:29554"  ; level 2 ; orig_coord_info "chr17,76452725,76453141,-"  ; protein_id "ENSP00000323687.6"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "UBE2O--AANAT^ENST00000319380.12"  ; transcript_name "UBE2O-201"  ; transcript_support_level 1 ; transcript_type protein_coding
UBE2O--AANAT	HAVANA	mRNA	1001	14795	.	+	.	FI_gene_label "UBE2O^ENSG00000175931.13"  ; ID "UBE2O--AANAT^ENST00000319380.12"  ; Parent "UBE2O--AANAT^UBE2O^ENSG00000175931.13"  ; ccdsid "CCDS32742.1"  ; exon_id "ENSE00001259738.6"  ; exon_number 1 ; gene_id "UBE2O--AANAT^UBE2O^ENSG00000175931.13"  ; gene_name UBE2O ; gene_type protein_coding ; havana_gene "OTTHUMG00000180178.3"  ; havana_transcript "OTTHUMT00000450123.2"  ; hgnc_id "HGNC:29554"  ; level 2 ; orig_coord_info "chr17,76452725,76453141,-"  ; protein_id "ENSP00000323687.6"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "UBE2O--AANAT^ENST00000319380.12"  ; transcript_name "UBE2O-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
UST--TMTC2	HAVANA	gene	17888	38089	.	+	.	FI_gene_label "TMTC2^ENSG00000179104.9"  ; ID "UST--TMTC2^TMTC2^ENSG00000179104.9"  ; ccdsid "CCDS9025.1"  ; exon_id "ENSE00003466705.2"  ; exon_number 1 ; gene_id "UST--TMTC2^TMTC2^ENSG00000179104.9"  ; gene_name TMTC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000169736.4"  ; havana_transcript "OTTHUMT00000405663.2"  ; hgnc_id "HGNC:25440"  ; level 2 ; orig_coord_info "chr12,82687587,82687669,+"  ; protein_id "ENSP00000322300.3"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "UST--TMTC2^ENST00000321196.8"  ; transcript_name "TMTC2-201"  ; transcript_support_level 1 ; transcript_type protein_coding
UST--TMTC2	HAVANA	mRNA	17888	38089	.	+	.	FI_gene_label "TMTC2^ENSG00000179104.9"  ; ID "UST--TMTC2^ENST00000321196.8"  ; Parent "UST--TMTC2^TMTC2^ENSG00000179104.9"  ; ccdsid "CCDS9025.1"  ; exon_id "ENSE00003466705.2"  ; exon_number 1 ; gene_id "UST--TMTC2^TMTC2^ENSG00000179104.9"  ; gene_name TMTC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000169736.4"  ; havana_transcript "OTTHUMT00000405663.2"  ; hgnc_id "HGNC:25440"  ; level 2 ; orig_coord_info "chr12,82687587,82687669,+"  ; protein_id "ENSP00000322300.3"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "UST--TMTC2^ENST00000321196.8"  ; transcript_name "TMTC2-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
UST--TMTC2	HAVANA	gene	1001	14861	.	+	.	FI_gene_label "UST^ENSG00000111962.8"  ; ID "UST--TMTC2^UST^ENSG00000111962.8"  ; ccdsid "CCDS5213.1"  ; exon_id "ENSE00001444569.5"  ; exon_number 1 ; gene_id "UST--TMTC2^UST^ENSG00000111962.8"  ; gene_name UST ; gene_type protein_coding ; havana_gene "OTTHUMG00000016135.2"  ; havana_transcript "OTTHUMT00000043363.2"  ; hgnc_id "HGNC:17223"  ; level 2 ; orig_coord_info "chr6,148747431,148747677,+"  ; protein_id "ENSP00000356433.4"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "UST--TMTC2^ENST00000367463.5"  ; transcript_name "UST-201"  ; transcript_support_level 1 ; transcript_type protein_coding
UST--TMTC2	HAVANA	mRNA	1001	14861	.	+	.	FI_gene_label "UST^ENSG00000111962.8"  ; ID "UST--TMTC2^ENST00000367463.5"  ; Parent "UST--TMTC2^UST^ENSG00000111962.8"  ; ccdsid "CCDS5213.1"  ; exon_id "ENSE00001444569.5"  ; exon_number 1 ; gene_id "UST--TMTC2^UST^ENSG00000111962.8"  ; gene_name UST ; gene_type protein_coding ; havana_gene "OTTHUMG00000016135.2"  ; havana_transcript "OTTHUMT00000043363.2"  ; hgnc_id "HGNC:17223"  ; level 2 ; orig_coord_info "chr6,148747431,148747677,+"  ; protein_id "ENSP00000356433.4"  ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "UST--TMTC2^ENST00000367463.5"  ; transcript_name "UST-201"  ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created: 
AC092807.3--DDAH1	HAVANA	gene	1101	8302	.	+	.	FI_gene_label "AC092807.3^ENSG00000282057.1"  ; ID "AC092807.3--DDAH1^AC092807.3^ENSG00000282057.1"  ; exon_id "ENSE00001891111.1"  ; exon_number 1 ; gene_id "AC092807.3--DDAH1^AC092807.3^ENSG00000282057.1"  ; gene_name "AC092807.3"  ; gene_type lncRNA ; havana_gene "OTTHUMG00000010578.6"  ; havana_transcript "OTTHUMT00000029193.2"  ; level 2 ; orig_coord_info "chr1,85577984,85578150,-"  ; tag basic ; transcript_id "AC092807.3--DDAH1^ENST00000467530.5"  ; transcript_name "AC092807.3-203"  ; transcript_support_level 2 ; transcript_type lncRNA
AC092807.3--DDAH1	HAVANA	RNA	1101	8302	.	+	.	FI_gene_label "AC092807.3^ENSG00000282057.1"  ; ID "AC092807.3--DDAH1^ENST00000467530.5"  ; Parent "AC092807.3--DDAH1^AC092807.3^ENSG00000282057.1"  ; exon_id "ENSE00001891111.1"  ; exon_number 1 ; gene_id "AC092807.3--DDAH1^AC092807.3^ENSG00000282057.1"  ; gene_name "AC092807.3"  ; gene_type lncRNA ; havana_gene "OTTHUMG00000010578.6"  ; havana_transcript "OTTHUMT00000029193.2"  ; level 2 ; orig_coord_info "chr1,85577984,85578150,-"  ; tag basic ; transcript_id "AC092807.3--DDAH1^ENST00000467530.5"  ; transcript_name "AC092807.3-203"  ; transcript_support_level 2 ; transcript_type lncRNA
L1 and L2 created: 
ACTBP6--ACTB	HAVANA	gene	1001	2090	.	+	.	FI_gene_label "ACTBP6^ENSG00000203413.3"  ; ID "ACTBP6--ACTB^ACTBP6^ENSG00000203413.3"  ; exon_id "ENSE00002116857.1"  ; exon_number 1 ; gene_id "ACTBP6--ACTB^ACTBP6^ENSG00000203413.3"  ; gene_name ACTBP6 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000164632.2"  ; havana_transcript "OTTHUMT00000379462.2"  ; hgnc_id "HGNC:139"  ; level 1 ; ont "PGO:0000004"  ; orig_coord_info "chr8,84948585,84949674,+"  ; tag pseudo_consens basic ; transcript_id "ACTBP6--ACTB^ENST00000520036.1"  ; transcript_name "ACTBP6-201"  ; transcript_support_level NA ; transcript_type processed_pseudogene
ACTBP6--ACTB	HAVANA	RNA	1001	2090	.	+	.	FI_gene_label "ACTBP6^ENSG00000203413.3"  ; ID "ACTBP6--ACTB^ENST00000520036.1"  ; Parent "ACTBP6--ACTB^ACTBP6^ENSG00000203413.3"  ; exon_id "ENSE00002116857.1"  ; exon_number 1 ; gene_id "ACTBP6--ACTB^ACTBP6^ENSG00000203413.3"  ; gene_name ACTBP6 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000164632.2"  ; havana_transcript "OTTHUMT00000379462.2"  ; hgnc_id "HGNC:139"  ; level 1 ; ont "PGO:0000004"  ; orig_coord_info "chr8,84948585,84949674,+"  ; tag pseudo_consens basic ; transcript_id "ACTBP6--ACTB^ENST00000520036.1"  ; transcript_name "ACTBP6-201"  ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created: 
AKAP12--PHBP1	HAVANA	gene	18090	18897	.	+	.	FI_gene_label "PHBP1^ENSG00000213091.2"  ; ID "AKAP12--PHBP1^PHBP1^ENSG00000213091.2"  ; exon_id "ENSE00001789791.1"  ; exon_number 1 ; gene_id "AKAP12--PHBP1^PHBP1^ENSG00000213091.2"  ; gene_name PHBP1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000015817.3"  ; havana_transcript "OTTHUMT00000042684.1"  ; hgnc_id "HGNC:8913"  ; level 1 ; ont "PGO:0000004"  ; orig_coord_info "chr6,150042546,150043353,+"  ; tag pseudo_consens basic ; transcript_id "AKAP12--PHBP1^ENST00000392260.2"  ; transcript_name "PHBP1-201"  ; transcript_support_level NA ; transcript_type processed_pseudogene
AKAP12--PHBP1	HAVANA	RNA	18090	18897	.	+	.	FI_gene_label "PHBP1^ENSG00000213091.2"  ; ID "AKAP12--PHBP1^ENST00000392260.2"  ; Parent "AKAP12--PHBP1^PHBP1^ENSG00000213091.2"  ; exon_id "ENSE00001789791.1"  ; exon_number 1 ; gene_id "AKAP12--PHBP1^PHBP1^ENSG00000213091.2"  ; gene_name PHBP1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000015817.3"  ; havana_transcript "OTTHUMT00000042684.1"  ; hgnc_id "HGNC:8913"  ; level 1 ; ont "PGO:0000004"  ; orig_coord_info "chr6,150042546,150043353,+"  ; tag pseudo_consens basic ; transcript_id "AKAP12--PHBP1^ENST00000392260.2"  ; transcript_name "PHBP1-201"  ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created: 
ARPC3--LINC02827	HAVANA	gene	11971	15974	.	+	.	FI_gene_label "LINC02827^ENSG00000236908.2"  ; ID "ARPC3--LINC02827^LINC02827^ENSG00000236908.2"  ; exon_id "ENSE00002267328.1"  ; exon_number 1 ; gene_id "ARPC3--LINC02827^LINC02827^ENSG00000236908.2"  ; gene_name LINC02827 ; gene_type lncRNA ; havana_gene "OTTHUMG00000168182.1"  ; havana_transcript "OTTHUMT00000398633.1"  ; hgnc_id "HGNC:54358"  ; level 2 ; orig_coord_info "chr12,3318718,3319726,+"  ; tag basic ; transcript_id "ARPC3--LINC02827^ENST00000432994.2"  ; transcript_name "LINC02827-201"  ; transcript_support_level 2 ; transcript_type lncRNA
ARPC3--LINC02827	HAVANA	RNA	11971	15974	.	+	.	FI_gene_label "LINC02827^ENSG00000236908.2"  ; ID "ARPC3--LINC02827^ENST00000432994.2"  ; Parent "ARPC3--LINC02827^LINC02827^ENSG00000236908.2"  ; exon_id "ENSE00002267328.1"  ; exon_number 1 ; gene_id "ARPC3--LINC02827^LINC02827^ENSG00000236908.2"  ; gene_name LINC02827 ; gene_type lncRNA ; havana_gene "OTTHUMG00000168182.1"  ; havana_transcript "OTTHUMT00000398633.1"  ; hgnc_id "HGNC:54358"  ; level 2 ; orig_coord_info "chr12,3318718,3319726,+"  ; tag basic ; transcript_id "ARPC3--LINC02827^ENST00000432994.2"  ; transcript_name "LINC02827-201"  ; transcript_support_level 2 ; transcript_type lncRNA
L1 and L2 created: 
RIOK3--LINC01894	HAVANA	gene	18946	23723	.	+	.	FI_gene_label "LINC01894^ENSG00000264345.2"  ; ID "RIOK3--LINC01894^LINC01894^ENSG00000264345.2"  ; exon_id "ENSE00002717367.1"  ; exon_number 1 ; gene_id "RIOK3--LINC01894^LINC01894^ENSG00000264345.2"  ; gene_name LINC01894 ; gene_type lncRNA ; havana_gene "OTTHUMG00000179507.4"  ; havana_transcript "OTTHUMT00000446767.1"  ; hgnc_id "HGNC:52713"  ; level 2 ; orig_coord_info "chr18,24987357,24987682,-"  ; transcript_id "RIOK3--LINC01894^ENST00000580984.1"  ; transcript_name "LINC01894-201"  ; transcript_support_level 2 ; transcript_type lncRNA
RIOK3--LINC01894	HAVANA	RNA	18946	23723	.	+	.	FI_gene_label "LINC01894^ENSG00000264345.2"  ; ID "RIOK3--LINC01894^ENST00000580984.1"  ; Parent "RIOK3--LINC01894^LINC01894^ENSG00000264345.2"  ; exon_id "ENSE00002717367.1"  ; exon_number 1 ; gene_id "RIOK3--LINC01894^LINC01894^ENSG00000264345.2"  ; gene_name LINC01894 ; gene_type lncRNA ; havana_gene "OTTHUMG00000179507.4"  ; havana_transcript "OTTHUMT00000446767.1"  ; hgnc_id "HGNC:52713"  ; level 2 ; orig_coord_info "chr18,24987357,24987682,-"  ; transcript_id "RIOK3--LINC01894^ENST00000580984.1"  ; transcript_name "LINC01894-201"  ; transcript_support_level 2 ; transcript_type lncRNA
L1 and L2 created: 
TLK2--AC240565.1	HAVANA	gene	40046	48301	.	+	.	FI_gene_label "AC240565.1^ENSG00000280136.2"  ; ID "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2"  ; exon_id "ENSE00003756821.1"  ; exon_number 1 ; gene_id "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2"  ; gene_name "AC240565.1"  ; gene_type lncRNA ; havana_gene "OTTHUMG00000189256.2"  ; havana_transcript "OTTHUMT00000479189.2"  ; level 2 ; orig_coord_info "chr17,118383,118578,-"  ; tag not_best_in_genome_evidence basic ; transcript_id "TLK2--AC240565.1^ENST00000624936.2"  ; transcript_name "AC240565.1-201"  ; transcript_support_level 5 ; transcript_type lncRNA
TLK2--AC240565.1	HAVANA	RNA	40046	48301	.	+	.	FI_gene_label "AC240565.1^ENSG00000280136.2"  ; ID "TLK2--AC240565.1^ENST00000624936.2"  ; Parent "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2"  ; exon_id "ENSE00003756821.1"  ; exon_number 1 ; gene_id "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2"  ; gene_name "AC240565.1"  ; gene_type lncRNA ; havana_gene "OTTHUMG00000189256.2"  ; havana_transcript "OTTHUMT00000479189.2"  ; level 2 ; orig_coord_info "chr17,118383,118578,-"  ; tag not_best_in_genome_evidence basic ; transcript_id "TLK2--AC240565.1^ENST00000624936.2"  ; transcript_name "AC240565.1-201"  ; transcript_support_level 5 ; transcript_type lncRNA
219 cases fixed where L3 features have parent feature(s) missing
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--------------------------- Check5: l1 linked to l2 ----------------------------
No problem found
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--------------------------- Check6: remove orphan l1 ---------------------------
We remove only those not supposed to be orphan
None found
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------------------------- Check7: all level3 locations -------------------------
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------------------------------ Check8: check cds -------------------------------
No problem found
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----------------------------- Check9: check exons ------------------------------
No exons created
No exons locations modified
No supernumerary exons removed
No level2 locations modified
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----------------------------- Check10: check utrs ------------------------------
377 UTRs created that were missing
No UTRs locations modified
No supernumerary UTRs removed
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------------------------ Check11: all level2 locations -------------------------
No problem found
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------------------------ Check12: all level1 locations -------------------------
We fixed 23 wrong level1 location cases
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---------------------- Check13: remove identical isoforms ----------------------
None found
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                  ------ End checks (done in 0 second) ------                   


GFF3 file parsed