Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/88/2d8e85fcdd73135e3ce8fc10fd98c1/659_bTo-T1-TRNA-1_A23MVY2LT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1a/f73a0e22861201cc7c5cccf07ed1b4/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/95/19965a6f9d45e700e03b2cda9b1822/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/95/19965a6f9d45e700e03b2cda9b1822/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b8/a7b718fc66edb1b4d8a6ef3e48a668/659_bTo-T1-TRNA-1_A23MVY2LT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 403261926
[W::hts_idx_load3] The index file is older than the data file: 659_bTo-T1-TRNA-1_A23MVY2LT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	403261926
Known Splicing Events:	400189941
Partial Novel Splicing Events:	1690318
Novel Splicing Events:	1243866
Filtered Splicing Events:	137801

Total splicing  Junctions:	728540
Known Splicing Junctions:	299511
Partial Novel Splicing Junctions:	202331
Novel Splicing Junctions:	226698

===================================================================
Create BED file ...
Create Interact file ...