File Info

Filename
output/Logs/Info.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6b/b3f10610bb0cb64ae168d1d5aca63e/output/Logs/Info.log
Size
4.2 KB
Attempt
2026-06-08T06:18:16Z thread 424 Sample sheet being processed by common lib? Yes
2026-06-08T06:18:16Z thread 424 SampleSheet Settings: 
2026-06-08T06:18:16Z thread 424   FastqCompressionFormat = gzip
2026-06-08T06:18:16Z thread 424   NoLaneSplitting = FALSE
2026-06-08T06:18:16Z thread 424   OverrideCycles = Y151;I10;I10;Y151
2026-06-08T06:18:16Z thread 424   SoftwareVersion = 4.3.6
2026-06-08T06:18:16Z thread 424 
2026-06-08T06:18:16Z thread 424 Index Read 2 (i5): The barcode and UMI outputs will be processed and output in Reverse Complement of Sample Sheet inputs. OverrideCycles bases for this read will be interpreted in reverse.
2026-06-08T06:18:17Z thread 424 shared-thread-linux-native-asio output is disabled
2026-06-08T06:18:17Z thread 424 bcl-convert Version 4.4.6
2026-06-08T06:18:17Z thread 424 Copyright (c) 2014-2025 Illumina, Inc.
2026-06-08T06:18:17Z thread 424 Command Line: --tiles s_4 --output-directory output --bcl-input-directory rundir --sample-sheet rundir/SampleSheet.csv 
2026-06-08T06:18:17Z thread 424 Conversion Begins.
2026-06-08T06:18:17Z thread 424 Input BCL Information:
2026-06-08T06:18:17Z thread 424     Read Structure: 2026-06-08T06:18:17Z thread 424 Y1512026-06-08T06:18:17Z thread 424 ;2026-06-08T06:18:17Z thread 424 I102026-06-08T06:18:17Z thread 424 ;2026-06-08T06:18:17Z thread 424 I102026-06-08T06:18:17Z thread 424 ;2026-06-08T06:18:17Z thread 424 Y1512026-06-08T06:18:17Z thread 424 
2026-06-08T06:18:17Z thread 424     RunInfo.xml file lists: 8 lanes, 6272 tiles
2026-06-08T06:18:17Z thread 424     BCL file format: cbcl
2026-06-08T06:18:17Z thread 424     Positions file format: slocs
2026-06-08T06:18:17Z thread 424     Filter file format: filter
2026-06-08T06:18:17Z thread 424 Conversion Information:
2026-06-08T06:18:17Z thread 424     Tile filtering: converting 784/6272 tiles
2026-06-08T06:18:17Z thread 424     Sample Count for Lane 1: 96
2026-06-08T06:18:17Z thread 424     Lane 1 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-08T06:18:17Z thread 424     Sample Count for Lane 2: 96
2026-06-08T06:18:17Z thread 424     Lane 2 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-08T06:18:17Z thread 424     Sample Count for Lane 3: 96
2026-06-08T06:18:17Z thread 424     Lane 3 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-08T06:18:17Z thread 424     Sample Count for Lane 4: 96
2026-06-08T06:18:17Z thread 424     Sample Count for Lane 5: 96
2026-06-08T06:18:17Z thread 424     Lane 5 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-08T06:18:17Z thread 424     Sample Count for Lane 6: 96
2026-06-08T06:18:17Z thread 424     Lane 6 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-08T06:18:17Z thread 424     Sample Count for Lane 7: 96
2026-06-08T06:18:17Z thread 424     Lane 7 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-08T06:18:17Z thread 424     Sample Count for Lane 8: 96
2026-06-08T06:18:17Z thread 424     Lane 8 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-08T06:18:17Z thread 424     Expected number of sample FASTQ files to be created: 192
2026-06-08T06:18:17Z thread 424 # CPU hw threads available: 64
2026-06-08T06:18:17Z thread 424 Parallel Tiles: 4. Threads Per Tile: 16
2026-06-08T06:18:17Z thread 424 SW compressors: 64
2026-06-08T06:18:17Z thread 424 SW decompressors: 32
2026-06-08T06:18:17Z thread 424 SW FASTQ compression level: 1
2026-06-08T06:59:54Z thread 424 Lane 4 Post-run Information:
2026-06-08T06:59:54Z thread 424     Total clusters: 3905745308
2026-06-08T06:59:54Z thread 424     Total Genomic Reads: 7811490616
2026-06-08T06:59:54Z thread 424     Total Genomic Input Gigabases 1179.54
2026-06-08T06:59:54Z thread 424     Minimum reads for a sample: 8244
2026-06-08T06:59:54Z thread 424     Maximum reads for a sample: 135537370
2026-06-08T06:59:54Z thread 424     Average reads per sample: 75581627.81
2026-06-08T06:59:54Z thread 424     Undetermined reads: 555654346
2026-06-08T06:59:55Z thread 424 Conversion Complete.