AIH curated blacklist: matched 3 fusion rows (breakpoint_ID in qualified set)
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ARRIBA FILTERING SUMMARY
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Total fusions: 152
Pass (FILTER=PASS): 5 (3.3%)
Fail (FILTER=FAIL): 147 (96.7%)
AIH curated blacklist (blacklisted flag):
Total blacklisted: 3
All 3 blacklisted rows have FILTER=FAIL
Failure reasons (top 15):
confidence_below_min(medium<high): 36
confidence_below_min(low<high);total_reads_below_min(3.0<8.0): 25
confidence_below_min(low<high);total_reads_below_min(4.0<8.0): 14
confidence_below_min(medium<high);total_reads_below_min(6.0<8.0): 12
confidence_below_min(low<high);total_reads_below_min(2.0<8.0): 11
confidence_below_min(medium<high);total_reads_below_min(4.0<8.0): 11
confidence_below_min(low<high);total_reads_below_min(1.0<8.0): 7
confidence_below_min(low<high);total_reads_below_min(0.0<8.0): 7
confidence_below_min(low<high): 6
confidence_below_min(medium<high);total_reads_below_min(3.0<8.0): 4
confidence_below_min(low<high);total_reads_below_min(5.0<8.0): 2
confidence_below_min(medium<high);aih_curated_blacklist: 2
confidence_below_min(medium<high);total_reads_below_min(7.0<8.0): 2
confidence_below_min(medium<high);total_reads_below_min(5.0<8.0): 2
confidence_below_min(low<high);total_reads_below_min(7.0<8.0): 2
Breakdown by confidence:
high: 5 pass, 2 fail (total: 7)
low: 0 pass, 75 fail (total: 75)
medium: 0 pass, 70 fail (total: 70)
Arriba filter: 152 rows -> 5 PASS; wrote 659_Mt-T1-TRNA-1_A23MVY2LT4_2.arriba.fusions.filtered.tsv and 659_Mt-T1-TRNA-1_A23MVY2LT4_2.arriba.fusions.filtered_pass_only.tsv
Summary written to: 659_Mt-T1-TRNA-1_A23MVY2LT4_2.arriba.fusions.filter_summary.txt