Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/93/50ce38a6df36119b17bb2e96d5f5af/659_bGW-T1-TRNA-1_A23MVY2LT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5e/c329dd2c8c9f1162501637868b47e0/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5e/c329dd2c8c9f1162501637868b47e0/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/db/e822b73d09ba71829a7ea4ecc56fb6/659_bGW-T1-TRNA-1_A23MVY2LT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (4 inputs)

[W::hts_idx_load3] The index file is older than the data file: 659_bGW-T1-TRNA-1_A23MVY2LT4_1.Aligned.sortedByCoord.out.bam.bai
Load BAM file ...  Done
report duplicte rate based on sequence ...
report duplicte rate based on mapping  ...
generate R script ...
null device 
          1