Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/19/624695477f3bbe3afa5ff6d1a3be28/PX_FFPE_stm_TRNA_nat_01_A23MVY2LT4_1.star_alignment.Aligned.sortedByCoord.out.cram
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4b/c42a824681a061cd787fdb06ac8ea9/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4b/c42a824681a061cd787fdb06ac8ea9/.command.run
==> STAGING COMPLETE (3 inputs)

ls: *.bai: No such file or directory
ls: *.csi: No such file or directory