.command.sh - Workdir - NFCORE_RNAFUSION:RNAFUSION:RNA_CONTAMINATION_DETECTION_WORKFLOW:EXTRACT_VAF_FEATURES (659_Mt-T1-TRNA-1_A23MVY2LT4_2)

File Info

Filename: .command.sh
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/56/01759d33a31ebb3cf1f53d9076de2e/.command.sh
Size: 407 bytes
Task: NFCORE_RNAFUSION:RNAFUSION:RNA_CONTAMINATION_DETECTION_WORKFLOW:EXTRACT_VAF_FEATURES (659_Mt-T1-TRNA-1_A23MVY2LT4_2)
Attempt

Content

#!/bin/bash -euo pipefail
# Extract VAF features from VCF
extract_vaf_features.py \
    "659_Mt-T1-TRNA-1_A23MVY2LT4_2.vcf" \
    --output "659_Mt-T1-TRNA-1_A23MVY2LT4_2.features.csv"

cat <<-END_VERSIONS > versions.yml
"NFCORE_RNAFUSION:RNAFUSION:RNA_CONTAMINATION_DETECTION_WORKFLOW:EXTRACT_VAF_FEATURES":
    python: $(python3 --version | sed 's/Python //g')
    extract_vaf_features: 1.0.0
END_VERSIONS