Using GATK jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar
Running:
java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xmx60620M -XX:-UsePerfData -XX:ParallelGCThreads=2 -jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar MarkDuplicates --INPUT 659_bTo-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam --OUTPUT 659_bTo-T1-TRNA-1_A23MVY2LT4_2.md.bam --METRICS_FILE 659_bTo-T1-TRNA-1_A23MVY2LT4_2.md.bam.metrics --TMP_DIR . --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa -REMOVE_DUPLICATES false -VALIDATION_STRINGENCY LENIENT
08:58:31.281 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar!/com/intel/gkl/native/libgkl_compression.so
[Mon Jun 08 08:58:31 GMT 2026] MarkDuplicates --INPUT 659_bTo-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam --OUTPUT 659_bTo-T1-TRNA-1_A23MVY2LT4_2.md.bam --METRICS_FILE 659_bTo-T1-TRNA-1_A23MVY2LT4_2.md.bam.metrics --REMOVE_DUPLICATES false --TMP_DIR . --VALIDATION_STRINGENCY LENIENT --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --FLOW_MODE false --FLOW_QUALITY_SUM_STRATEGY false --USE_END_IN_UNPAIRED_READS false --USE_UNPAIRED_CLIPPED_END false --UNPAIRED_END_UNCERTAINTY 0 --FLOW_SKIP_FIRST_N_FLOWS 0 --FLOW_Q_IS_KNOWN_END false --FLOW_EFFECTIVE_QUALITY_THRESHOLD 15 --ADD_PG_TAG_TO_READS true --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX <optimized capture of last three ':' separated fields as numeric values> --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Mon Jun 08 08:58:31 GMT 2026] Executing as ?@nf-4fce08b0e655d0c21a5a0d655299e970-0eb7b-qtqgm on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 17.0.3-internal+0-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:4.4.0.0
INFO 2026-06-08 08:58:31 MarkDuplicates Start of doWork freeMemory: 105829144; totalMemory: 134217728; maxMemory: 63585648640
INFO 2026-06-08 08:58:31 MarkDuplicates Reading input file and constructing read end information.
INFO 2026-06-08 08:58:31 MarkDuplicates Will retain up to 230382784 data points before spilling to disk.
INFO 2026-06-08 08:58:35 MarkDuplicates Read 1,000,000 records. Elapsed time: 00:00:02s. Time for last 1,000,000: 2s. Last read position: chr1:1,046,445
INFO 2026-06-08 08:58:35 MarkDuplicates Tracking 8901 as yet unmatched pairs. 4602 records in RAM.
INFO 2026-06-08 08:58:37 MarkDuplicates Read 2,000,000 records. Elapsed time: 00:00:04s. Time for last 1,000,000: 2s. Last read position: chr1:1,318,849
INFO 2026-06-08 08:58:37 MarkDuplicates Tracking 8871 as yet unmatched pairs. 405 records in RAM.
INFO 2026-06-08 08:58:40 MarkDuplicates Read 3,000,000 records. Elapsed time: 00:00:06s. Time for last 1,000,000: 2s. Last read position: chr1:2,291,565
INFO 2026-06-08 08:58:40 MarkDuplicates Tracking 12811 as yet unmatched pairs. 356 records in RAM.
INFO 2026-06-08 08:58:42 MarkDuplicates Read 4,000,000 records. Elapsed time: 00:00:08s. Time for last 1,000,000: 1s. Last read position: chr1:6,469,113
INFO 2026-06-08 08:58:42 MarkDuplicates Tracking 17085 as yet unmatched pairs. 269 records in RAM.
INFO 2026-06-08 08:58:44 MarkDuplicates Read 5,000,000 records. Elapsed time: 00:00:11s. Time for last 1,000,000: 2s. Last read position: chr1:9,245,131
INFO 2026-06-08 08:58:44 MarkDuplicates Tracking 20390 as yet unmatched pairs. 398 records in RAM.
INFO 2026-06-08 08:58:46 MarkDuplicates Read 6,000,000 records. Elapsed time: 00:00:13s. Time for last 1,000,000: 2s. Last read position: chr1:11,134,354
INFO 2026-06-08 08:58:46 MarkDuplicates Tracking 23733 as yet unmatched pairs. 301 records in RAM.
INFO 2026-06-08 08:58:48 MarkDuplicates Read 7,000,000 records. Elapsed time: 00:00:15s. Time for last 1,000,000: 2s. Last read position: chr1:12,578,868
INFO 2026-06-08 08:58:48 MarkDuplicates Tracking 27896 as yet unmatched pairs. 756 records in RAM.
INFO 2026-06-08 08:58:50 MarkDuplicates Read 8,000,000 records. Elapsed time: 00:00:17s. Time for last 1,000,000: 1s. Last read position: chr1:16,447,891
INFO 2026-06-08 08:58:50 MarkDuplicates Tracking 30969 as yet unmatched pairs. 663 records in RAM.
INFO 2026-06-08 08:58:53 MarkDuplicates Read 9,000,000 records. Elapsed time: 00:00:20s. Time for last 1,000,000: 2s. Last read position: chr1:19,232,990
INFO 2026-06-08 08:58:53 MarkDuplicates Tracking 34745 as yet unmatched pairs. 1074 records in RAM.
INFO 2026-06-08 08:58:55 MarkDuplicates Read 10,000,000 records. Elapsed time: 00:00:22s. Time for last 1,000,000: 1s. Last read position: chr1:21,575,816
INFO 2026-06-08 08:58:55 MarkDuplicates Tracking 37388 as yet unmatched pairs. 505 records in RAM.
INFO 2026-06-08 08:58:57 MarkDuplicates Read 11,000,000 records. Elapsed time: 00:00:24s. Time for last 1,000,000: 2s. Last read position: chr1:21,852,801
INFO 2026-06-08 08:58:57 MarkDuplicates Tracking 41901 as yet unmatched pairs. 1517 records in RAM.
INFO 2026-06-08 08:58:59 MarkDuplicates Read 12,000,000 records. Elapsed time: 00:00:26s. Time for last 1,000,000: 2s. Last read position: chr1:22,501,529
INFO 2026-06-08 08:58:59 MarkDuplicates Tracking 44011 as yet unmatched pairs. 106 records in RAM.
INFO 2026-06-08 08:59:02 MarkDuplicates Read 13,000,000 records. Elapsed time: 00:00:28s. Time for last 1,000,000: 2s. Last read position: chr1:22,659,599
INFO 2026-06-08 08:59:02 MarkDuplicates Tracking 49291 as yet unmatched pairs. 1728 records in RAM.
INFO 2026-06-08 08:59:03 MarkDuplicates Read 14,000,000 records. Elapsed time: 00:00:30s. Time for last 1,000,000: 1s. Last read position: chr1:24,661,317
INFO 2026-06-08 08:59:03 MarkDuplicates Tracking 50968 as yet unmatched pairs. 413 records in RAM.
INFO 2026-06-08 08:59:05 MarkDuplicates Read 15,000,000 records. Elapsed time: 00:00:32s. Time for last 1,000,000: 1s. Last read position: chr1:26,863,263
INFO 2026-06-08 08:59:05 MarkDuplicates Tracking 60212 as yet unmatched pairs. 6618 records in RAM.
INFO 2026-06-08 08:59:07 MarkDuplicates Read 16,000,000 records. Elapsed time: 00:00:34s. Time for last 1,000,000: 2s. Last read position: chr1:27,841,045
INFO 2026-06-08 08:59:07 MarkDuplicates Tracking 57409 as yet unmatched pairs. 445 records in RAM.
INFO 2026-06-08 08:59:09 MarkDuplicates Read 17,000,000 records. Elapsed time: 00:00:35s. Time for last 1,000,000: 1s. Last read position: chr1:31,425,785
INFO 2026-06-08 08:59:09 MarkDuplicates Tracking 63866 as yet unmatched pairs. 3357 records in RAM.
INFO 2026-06-08 08:59:12 MarkDuplicates Read 18,000,000 records. Elapsed time: 00:00:39s. Time for last 1,000,000: 3s. Last read position: chr1:32,180,428
INFO 2026-06-08 08:59:12 MarkDuplicates Tracking 64148 as yet unmatched pairs. 185 records in RAM.
INFO 2026-06-08 08:59:13 MarkDuplicates Read 19,000,000 records. Elapsed time: 00:00:40s. Time for last 1,000,000: 1s. Last read position: chr1:34,785,373
INFO 2026-06-08 08:59:13 MarkDuplicates Tracking 68527 as yet unmatched pairs. 1193 records in RAM.
INFO 2026-06-08 08:59:15 MarkDuplicates Read 20,000,000 records. Elapsed time: 00:00:42s. Time for last 1,000,000: 1s. Last read position: chr1:36,466,146
INFO 2026-06-08 08:59:15 MarkDuplicates Tracking 71025 as yet unmatched pairs. 449 records in RAM.
INFO 2026-06-08 08:59:17 MarkDuplicates Read 21,000,000 records. Elapsed time: 00:00:44s. Time for last 1,000,000: 1s. Last read position: chr1:39,458,406
INFO 2026-06-08 08:59:17 MarkDuplicates Tracking 74208 as yet unmatched pairs. 672 records in RAM.
INFO 2026-06-08 08:59:18 MarkDuplicates Read 22,000,000 records. Elapsed time: 00:00:45s. Time for last 1,000,000: 1s. Last read position: chr1:42,696,723
INFO 2026-06-08 08:59:18 MarkDuplicates Tracking 77798 as yet unmatched pairs. 994 records in RAM.
INFO 2026-06-08 08:59:21 MarkDuplicates Read 23,000,000 records. Elapsed time: 00:00:48s. Time for last 1,000,000: 2s. Last read position: chr1:43,588,944
INFO 2026-06-08 08:59:21 MarkDuplicates Tracking 82451 as yet unmatched pairs. 2258 records in RAM.
INFO 2026-06-08 08:59:22 MarkDuplicates Read 24,000,000 records. Elapsed time: 00:00:49s. Time for last 1,000,000: 1s. Last read position: chr1:44,805,950
INFO 2026-06-08 08:59:22 MarkDuplicates Tracking 84265 as yet unmatched pairs. 466 records in RAM.
INFO 2026-06-08 08:59:25 MarkDuplicates Read 25,000,000 records. Elapsed time: 00:00:52s. Time for last 1,000,000: 2s. Last read position: chr1:51,471,722
INFO 2026-06-08 08:59:25 MarkDuplicates Tracking 87498 as yet unmatched pairs. 620 records in RAM.
INFO 2026-06-08 08:59:27 MarkDuplicates Read 26,000,000 records. Elapsed time: 00:00:54s. Time for last 1,000,000: 2s. Last read position: chr1:58,056,194
INFO 2026-06-08 08:59:27 MarkDuplicates Tracking 89945 as yet unmatched pairs. 42 records in RAM.
INFO 2026-06-08 08:59:30 MarkDuplicates Read 27,000,000 records. Elapsed time: 00:00:57s. Time for last 1,000,000: 2s. Last read position: chr1:67,430,175
INFO 2026-06-08 08:59:30 MarkDuplicates Tracking 94322 as yet unmatched pairs. 1146 records in RAM.
INFO 2026-06-08 08:59:32 MarkDuplicates Read 28,000,000 records. Elapsed time: 00:00:59s. Time for last 1,000,000: 2s. Last read position: chr1:86,440,287
INFO 2026-06-08 08:59:32 MarkDuplicates Tracking 98558 as yet unmatched pairs. 2436 records in RAM.
INFO 2026-06-08 08:59:34 MarkDuplicates Read 29,000,000 records. Elapsed time: 00:01:01s. Time for last 1,000,000: 2s. Last read position: chr1:94,202,604
INFO 2026-06-08 08:59:34 MarkDuplicates Tracking 99478 as yet unmatched pairs. 523 records in RAM.
INFO 2026-06-08 08:59:36 MarkDuplicates Read 30,000,000 records. Elapsed time: 00:01:03s. Time for last 1,000,000: 1s. Last read position: chr1:108,992,615
INFO 2026-06-08 08:59:36 MarkDuplicates Tracking 102128 as yet unmatched pairs. 239 records in RAM.
INFO 2026-06-08 08:59:38 MarkDuplicates Read 31,000,000 records. Elapsed time: 00:01:05s. Time for last 1,000,000: 1s. Last read position: chr1:113,391,071
INFO 2026-06-08 08:59:38 MarkDuplicates Tracking 105412 as yet unmatched pairs. 321 records in RAM.
INFO 2026-06-08 08:59:40 MarkDuplicates Read 32,000,000 records. Elapsed time: 00:01:07s. Time for last 1,000,000: 2s. Last read position: chr1:117,496,879
INFO 2026-06-08 08:59:40 MarkDuplicates Tracking 108241 as yet unmatched pairs. 150 records in RAM.
INFO 2026-06-08 08:59:43 MarkDuplicates Read 33,000,000 records. Elapsed time: 00:01:10s. Time for last 1,000,000: 2s. Last read position: chr1:120,811,949
INFO 2026-06-08 08:59:43 MarkDuplicates Tracking 111419 as yet unmatched pairs. 337 records in RAM.
INFO 2026-06-08 08:59:44 MarkDuplicates Read 34,000,000 records. Elapsed time: 00:01:11s. Time for last 1,000,000: 1s. Last read position: chr1:147,209,008
INFO 2026-06-08 08:59:44 MarkDuplicates Tracking 112754 as yet unmatched pairs. 92 records in RAM.
INFO 2026-06-08 08:59:46 MarkDuplicates Read 35,000,000 records. Elapsed time: 00:01:13s. Time for last 1,000,000: 1s. Last read position: chr1:149,840,777
INFO 2026-06-08 08:59:46 MarkDuplicates Tracking 116335 as yet unmatched pairs. 2072 records in RAM.
INFO 2026-06-08 08:59:47 MarkDuplicates Read 36,000,000 records. Elapsed time: 00:01:14s. Time for last 1,000,000: 1s. Last read position: chr1:150,577,139
INFO 2026-06-08 08:59:47 MarkDuplicates Tracking 118492 as yet unmatched pairs. 1565 records in RAM.
INFO 2026-06-08 08:59:49 MarkDuplicates Read 37,000,000 records. Elapsed time: 00:01:16s. Time for last 1,000,000: 1s. Last read position: chr1:151,406,137
INFO 2026-06-08 08:59:49 MarkDuplicates Tracking 120742 as yet unmatched pairs. 575 records in RAM.
INFO 2026-06-08 08:59:51 MarkDuplicates Read 38,000,000 records. Elapsed time: 00:01:18s. Time for last 1,000,000: 2s. Last read position: chr1:153,662,546
INFO 2026-06-08 08:59:51 MarkDuplicates Tracking 124302 as yet unmatched pairs. 1415 records in RAM.
INFO 2026-06-08 08:59:53 MarkDuplicates Read 39,000,000 records. Elapsed time: 00:01:20s. Time for last 1,000,000: 2s. Last read position: chr1:154,176,115
INFO 2026-06-08 08:59:53 MarkDuplicates Tracking 130970 as yet unmatched pairs. 5253 records in RAM.
INFO 2026-06-08 08:59:55 MarkDuplicates Read 40,000,000 records. Elapsed time: 00:01:22s. Time for last 1,000,000: 2s. Last read position: chr1:154,970,376
INFO 2026-06-08 08:59:55 MarkDuplicates Tracking 130507 as yet unmatched pairs. 1715 records in RAM.
INFO 2026-06-08 08:59:57 MarkDuplicates Read 41,000,000 records. Elapsed time: 00:01:24s. Time for last 1,000,000: 1s. Last read position: chr1:155,749,403
INFO 2026-06-08 08:59:57 MarkDuplicates Tracking 132265 as yet unmatched pairs. 372 records in RAM.
INFO 2026-06-08 09:00:00 MarkDuplicates Read 42,000,000 records. Elapsed time: 00:01:27s. Time for last 1,000,000: 2s. Last read position: chr1:156,135,995
INFO 2026-06-08 09:00:00 MarkDuplicates Tracking 145812 as yet unmatched pairs. 9667 records in RAM.
INFO 2026-06-08 09:00:02 MarkDuplicates Read 43,000,000 records. Elapsed time: 00:01:29s. Time for last 1,000,000: 1s. Last read position: chr1:156,333,570
INFO 2026-06-08 09:00:02 MarkDuplicates Tracking 142718 as yet unmatched pairs. 2787 records in RAM.
INFO 2026-06-08 09:00:04 MarkDuplicates Read 44,000,000 records. Elapsed time: 00:01:31s. Time for last 1,000,000: 2s. Last read position: chr1:159,919,786
INFO 2026-06-08 09:00:04 MarkDuplicates Tracking 146773 as yet unmatched pairs. 3703 records in RAM.
INFO 2026-06-08 09:00:06 MarkDuplicates Read 45,000,000 records. Elapsed time: 00:01:33s. Time for last 1,000,000: 1s. Last read position: chr1:161,196,405
INFO 2026-06-08 09:00:06 MarkDuplicates Tracking 148363 as yet unmatched pairs. 1947 records in RAM.
INFO 2026-06-08 09:00:08 MarkDuplicates Read 46,000,000 records. Elapsed time: 00:01:35s. Time for last 1,000,000: 1s. Last read position: chr1:161,984,169
INFO 2026-06-08 09:00:08 MarkDuplicates Tracking 149759 as yet unmatched pairs. 634 records in RAM.
INFO 2026-06-08 09:00:09 MarkDuplicates Read 47,000,000 records. Elapsed time: 00:01:36s. Time for last 1,000,000: 1s. Last read position: chr1:171,527,829
INFO 2026-06-08 09:00:09 MarkDuplicates Tracking 152942 as yet unmatched pairs. 775 records in RAM.
INFO 2026-06-08 09:00:11 MarkDuplicates Read 48,000,000 records. Elapsed time: 00:01:38s. Time for last 1,000,000: 1s. Last read position: chr1:180,048,674
INFO 2026-06-08 09:00:11 MarkDuplicates Tracking 155270 as yet unmatched pairs. 177 records in RAM.
INFO 2026-06-08 09:00:13 MarkDuplicates Read 49,000,000 records. Elapsed time: 00:01:40s. Time for last 1,000,000: 2s. Last read position: chr1:183,186,287
INFO 2026-06-08 09:00:13 MarkDuplicates Tracking 166156 as yet unmatched pairs. 7625 records in RAM.
INFO 2026-06-08 09:00:16 MarkDuplicates Read 50,000,000 records. Elapsed time: 00:01:43s. Time for last 1,000,000: 2s. Last read position: chr1:183,236,466
INFO 2026-06-08 09:00:16 MarkDuplicates Tracking 174339 as yet unmatched pairs. 11974 records in RAM.
INFO 2026-06-08 09:00:18 MarkDuplicates Read 51,000,000 records. Elapsed time: 00:01:45s. Time for last 1,000,000: 2s. Last read position: chr1:185,308,761
INFO 2026-06-08 09:00:18 MarkDuplicates Tracking 169480 as yet unmatched pairs. 4064 records in RAM.
INFO 2026-06-08 09:00:20 MarkDuplicates Read 52,000,000 records. Elapsed time: 00:01:47s. Time for last 1,000,000: 1s. Last read position: chr1:197,102,826
INFO 2026-06-08 09:00:20 MarkDuplicates Tracking 168187 as yet unmatched pairs. 194 records in RAM.
INFO 2026-06-08 09:00:21 MarkDuplicates Read 53,000,000 records. Elapsed time: 00:01:48s. Time for last 1,000,000: 1s. Last read position: chr1:201,810,716
INFO 2026-06-08 09:00:21 MarkDuplicates Tracking 172085 as yet unmatched pairs. 928 records in RAM.
INFO 2026-06-08 09:00:23 MarkDuplicates Read 54,000,000 records. Elapsed time: 00:01:50s. Time for last 1,000,000: 1s. Last read position: chr1:204,404,161
INFO 2026-06-08 09:00:23 MarkDuplicates Tracking 174536 as yet unmatched pairs. 24 records in RAM.
INFO 2026-06-08 09:00:25 MarkDuplicates Read 55,000,000 records. Elapsed time: 00:01:51s. Time for last 1,000,000: 1s. Last read position: chr1:207,757,037
INFO 2026-06-08 09:00:25 MarkDuplicates Tracking 178749 as yet unmatched pairs. 1668 records in RAM.
INFO 2026-06-08 09:00:27 MarkDuplicates Read 56,000,000 records. Elapsed time: 00:01:54s. Time for last 1,000,000: 2s. Last read position: chr1:209,626,881
INFO 2026-06-08 09:00:27 MarkDuplicates Tracking 188036 as yet unmatched pairs. 6933 records in RAM.
INFO 2026-06-08 09:00:29 MarkDuplicates Read 57,000,000 records. Elapsed time: 00:01:56s. Time for last 1,000,000: 1s. Last read position: chr1:211,663,446
INFO 2026-06-08 09:00:29 MarkDuplicates Tracking 184651 as yet unmatched pairs. 152 records in RAM.
INFO 2026-06-08 09:00:30 MarkDuplicates Read 58,000,000 records. Elapsed time: 00:01:57s. Time for last 1,000,000: 1s. Last read position: chr1:223,749,039
INFO 2026-06-08 09:00:30 MarkDuplicates Tracking 188392 as yet unmatched pairs. 1051 records in RAM.
INFO 2026-06-08 09:00:32 MarkDuplicates Read 59,000,000 records. Elapsed time: 00:01:59s. Time for last 1,000,000: 1s. Last read position: chr1:228,097,092
INFO 2026-06-08 09:00:32 MarkDuplicates Tracking 192678 as yet unmatched pairs. 2487 records in RAM.
INFO 2026-06-08 09:00:34 MarkDuplicates Read 60,000,000 records. Elapsed time: 00:02:01s. Time for last 1,000,000: 1s. Last read position: chr1:233,372,116
INFO 2026-06-08 09:00:34 MarkDuplicates Tracking 194116 as yet unmatched pairs. 105 records in RAM.
INFO 2026-06-08 09:00:35 MarkDuplicates Read 61,000,000 records. Elapsed time: 00:02:02s. Time for last 1,000,000: 1s. Last read position: chr1:244,054,202
INFO 2026-06-08 09:00:35 MarkDuplicates Tracking 197572 as yet unmatched pairs. 254 records in RAM.
INFO 2026-06-08 09:00:39 MarkDuplicates Read 62,000,000 records. Elapsed time: 00:02:06s. Time for last 1,000,000: 3s. Last read position: chr2:1,744,261
INFO 2026-06-08 09:00:39 MarkDuplicates Tracking 202660 as yet unmatched pairs. 201319 records in RAM.
INFO 2026-06-08 09:00:41 MarkDuplicates Read 63,000,000 records. Elapsed time: 00:02:08s. Time for last 1,000,000: 1s. Last read position: chr2:10,802,613
INFO 2026-06-08 09:00:41 MarkDuplicates Tracking 203543 as yet unmatched pairs. 202194 records in RAM.
INFO 2026-06-08 09:00:42 MarkDuplicates Read 64,000,000 records. Elapsed time: 00:02:09s. Time for last 1,000,000: 1s. Last read position: chr2:20,203,931
INFO 2026-06-08 09:00:42 MarkDuplicates Tracking 219032 as yet unmatched pairs. 217665 records in RAM.
INFO 2026-06-08 09:00:44 MarkDuplicates Read 65,000,000 records. Elapsed time: 00:02:11s. Time for last 1,000,000: 1s. Last read position: chr2:24,834,904
INFO 2026-06-08 09:00:44 MarkDuplicates Tracking 210201 as yet unmatched pairs. 208799 records in RAM.
INFO 2026-06-08 09:00:46 MarkDuplicates Read 66,000,000 records. Elapsed time: 00:02:13s. Time for last 1,000,000: 1s. Last read position: chr2:27,337,981
INFO 2026-06-08 09:00:46 MarkDuplicates Tracking 213445 as yet unmatched pairs. 212025 records in RAM.
INFO 2026-06-08 09:00:48 MarkDuplicates Read 67,000,000 records. Elapsed time: 00:02:15s. Time for last 1,000,000: 1s. Last read position: chr2:29,160,369
INFO 2026-06-08 09:00:48 MarkDuplicates Tracking 216517 as yet unmatched pairs. 215071 records in RAM.
INFO 2026-06-08 09:00:50 MarkDuplicates Read 68,000,000 records. Elapsed time: 00:02:17s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,256
INFO 2026-06-08 09:00:50 MarkDuplicates Tracking 304745 as yet unmatched pairs. 212551 records in RAM.
INFO 2026-06-08 09:00:51 MarkDuplicates Read 69,000,000 records. Elapsed time: 00:02:18s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,264
INFO 2026-06-08 09:00:51 MarkDuplicates Tracking 557767 as yet unmatched pairs. 202590 records in RAM.
INFO 2026-06-08 09:00:53 MarkDuplicates Read 70,000,000 records. Elapsed time: 00:02:20s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,264
INFO 2026-06-08 09:00:53 MarkDuplicates Tracking 1253282 as yet unmatched pairs. 175551 records in RAM.
INFO 2026-06-08 09:00:55 MarkDuplicates Read 71,000,000 records. Elapsed time: 00:02:22s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,406
INFO 2026-06-08 09:00:55 MarkDuplicates Tracking 1647891 as yet unmatched pairs. 159886 records in RAM.
INFO 2026-06-08 09:00:57 MarkDuplicates Read 72,000,000 records. Elapsed time: 00:02:24s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,406
INFO 2026-06-08 09:00:57 MarkDuplicates Tracking 1652371 as yet unmatched pairs. 159811 records in RAM.
INFO 2026-06-08 09:00:58 MarkDuplicates Read 73,000,000 records. Elapsed time: 00:02:25s. Time for last 1,000,000: 1s. Last read position: chr2:33,134,933
INFO 2026-06-08 09:00:58 MarkDuplicates Tracking 1750603 as yet unmatched pairs. 157591 records in RAM.
INFO 2026-06-08 09:01:00 MarkDuplicates Read 74,000,000 records. Elapsed time: 00:02:27s. Time for last 1,000,000: 1s. Last read position: chr2:38,343,469
INFO 2026-06-08 09:01:00 MarkDuplicates Tracking 1746264 as yet unmatched pairs. 153241 records in RAM.
INFO 2026-06-08 09:01:02 MarkDuplicates Read 75,000,000 records. Elapsed time: 00:02:29s. Time for last 1,000,000: 1s. Last read position: chr2:43,960,613
INFO 2026-06-08 09:01:02 MarkDuplicates Tracking 1742722 as yet unmatched pairs. 149669 records in RAM.
INFO 2026-06-08 09:01:04 MarkDuplicates Read 76,000,000 records. Elapsed time: 00:02:31s. Time for last 1,000,000: 1s. Last read position: chr2:53,932,029
INFO 2026-06-08 09:01:04 MarkDuplicates Tracking 1740504 as yet unmatched pairs. 147426 records in RAM.
INFO 2026-06-08 09:01:05 MarkDuplicates Read 77,000,000 records. Elapsed time: 00:02:32s. Time for last 1,000,000: 1s. Last read position: chr2:55,328,411
INFO 2026-06-08 09:01:05 MarkDuplicates Tracking 1737158 as yet unmatched pairs. 144071 records in RAM.
INFO 2026-06-08 09:01:07 MarkDuplicates Read 78,000,000 records. Elapsed time: 00:02:34s. Time for last 1,000,000: 1s. Last read position: chr2:63,594,569
INFO 2026-06-08 09:01:07 MarkDuplicates Tracking 1734441 as yet unmatched pairs. 141331 records in RAM.
INFO 2026-06-08 09:01:09 MarkDuplicates Read 79,000,000 records. Elapsed time: 00:02:36s. Time for last 1,000,000: 1s. Last read position: chr2:70,088,156
INFO 2026-06-08 09:01:09 MarkDuplicates Tracking 1732287 as yet unmatched pairs. 139156 records in RAM.
INFO 2026-06-08 09:01:11 MarkDuplicates Read 80,000,000 records. Elapsed time: 00:02:38s. Time for last 1,000,000: 1s. Last read position: chr2:74,159,224
INFO 2026-06-08 09:01:11 MarkDuplicates Tracking 1728307 as yet unmatched pairs. 135170 records in RAM.
INFO 2026-06-08 09:01:12 MarkDuplicates Read 81,000,000 records. Elapsed time: 00:02:39s. Time for last 1,000,000: 1s. Last read position: chr2:84,906,399
INFO 2026-06-08 09:01:12 MarkDuplicates Tracking 1726896 as yet unmatched pairs. 133745 records in RAM.
INFO 2026-06-08 09:01:15 MarkDuplicates Read 82,000,000 records. Elapsed time: 00:02:42s. Time for last 1,000,000: 2s. Last read position: chr2:89,142,585
INFO 2026-06-08 09:01:15 MarkDuplicates Tracking 1720802 as yet unmatched pairs. 127643 records in RAM.
INFO 2026-06-08 09:01:16 MarkDuplicates Read 83,000,000 records. Elapsed time: 00:02:43s. Time for last 1,000,000: 1s. Last read position: chr2:99,195,613
INFO 2026-06-08 09:01:16 MarkDuplicates Tracking 1717538 as yet unmatched pairs. 124354 records in RAM.
INFO 2026-06-08 09:01:18 MarkDuplicates Read 84,000,000 records. Elapsed time: 00:02:45s. Time for last 1,000,000: 1s. Last read position: chr2:107,869,101
INFO 2026-06-08 09:01:18 MarkDuplicates Tracking 1714640 as yet unmatched pairs. 121429 records in RAM.
INFO 2026-06-08 09:01:20 MarkDuplicates Read 85,000,000 records. Elapsed time: 00:02:47s. Time for last 1,000,000: 1s. Last read position: chr2:109,614,946
INFO 2026-06-08 09:01:20 MarkDuplicates Tracking 1713213 as yet unmatched pairs. 119993 records in RAM.
INFO 2026-06-08 09:01:21 MarkDuplicates Read 86,000,000 records. Elapsed time: 00:02:48s. Time for last 1,000,000: 1s. Last read position: chr2:112,398,135
INFO 2026-06-08 09:01:21 MarkDuplicates Tracking 1710546 as yet unmatched pairs. 117314 records in RAM.
INFO 2026-06-08 09:01:23 MarkDuplicates Read 87,000,000 records. Elapsed time: 00:02:50s. Time for last 1,000,000: 1s. Last read position: chr2:119,932,475
INFO 2026-06-08 09:01:23 MarkDuplicates Tracking 1708102 as yet unmatched pairs. 114848 records in RAM.
INFO 2026-06-08 09:01:25 MarkDuplicates Read 88,000,000 records. Elapsed time: 00:02:52s. Time for last 1,000,000: 2s. Last read position: chr2:131,055,591
INFO 2026-06-08 09:01:25 MarkDuplicates Tracking 1704959 as yet unmatched pairs. 111654 records in RAM.
INFO 2026-06-08 09:01:27 MarkDuplicates Read 89,000,000 records. Elapsed time: 00:02:54s. Time for last 1,000,000: 1s. Last read position: chr2:151,812,405
INFO 2026-06-08 09:01:27 MarkDuplicates Tracking 1702533 as yet unmatched pairs. 109203 records in RAM.
INFO 2026-06-08 09:01:29 MarkDuplicates Read 90,000,000 records. Elapsed time: 00:02:56s. Time for last 1,000,000: 1s. Last read position: chr2:161,341,154
INFO 2026-06-08 09:01:29 MarkDuplicates Tracking 1699798 as yet unmatched pairs. 106432 records in RAM.
INFO 2026-06-08 09:01:31 MarkDuplicates Read 91,000,000 records. Elapsed time: 00:02:58s. Time for last 1,000,000: 2s. Last read position: chr2:172,471,076
INFO 2026-06-08 09:01:31 MarkDuplicates Tracking 1703658 as yet unmatched pairs. 110270 records in RAM.
INFO 2026-06-08 09:01:33 MarkDuplicates Read 92,000,000 records. Elapsed time: 00:03:00s. Time for last 1,000,000: 1s. Last read position: chr2:176,328,872
INFO 2026-06-08 09:01:33 MarkDuplicates Tracking 1693559 as yet unmatched pairs. 100150 records in RAM.
INFO 2026-06-08 09:01:35 MarkDuplicates Read 93,000,000 records. Elapsed time: 00:03:02s. Time for last 1,000,000: 1s. Last read position: chr2:181,900,775
INFO 2026-06-08 09:01:35 MarkDuplicates Tracking 1691699 as yet unmatched pairs. 98259 records in RAM.
INFO 2026-06-08 09:01:37 MarkDuplicates Read 94,000,000 records. Elapsed time: 00:03:04s. Time for last 1,000,000: 1s. Last read position: chr2:188,987,068
INFO 2026-06-08 09:01:37 MarkDuplicates Tracking 1702329 as yet unmatched pairs. 108871 records in RAM.
INFO 2026-06-08 09:01:39 MarkDuplicates Read 95,000,000 records. Elapsed time: 00:03:06s. Time for last 1,000,000: 1s. Last read position: chr2:188,998,302
INFO 2026-06-08 09:01:39 MarkDuplicates Tracking 1694068 as yet unmatched pairs. 100592 records in RAM.
INFO 2026-06-08 09:01:40 MarkDuplicates Read 96,000,000 records. Elapsed time: 00:03:07s. Time for last 1,000,000: 1s. Last read position: chr2:189,009,005
INFO 2026-06-08 09:01:40 MarkDuplicates Tracking 1685542 as yet unmatched pairs. 92051 records in RAM.
INFO 2026-06-08 09:01:42 MarkDuplicates Read 97,000,000 records. Elapsed time: 00:03:09s. Time for last 1,000,000: 1s. Last read position: chr2:189,088,706
INFO 2026-06-08 09:01:42 MarkDuplicates Tracking 1680319 as yet unmatched pairs. 86817 records in RAM.
INFO 2026-06-08 09:01:44 MarkDuplicates Read 98,000,000 records. Elapsed time: 00:03:11s. Time for last 1,000,000: 1s. Last read position: chr2:197,488,471
INFO 2026-06-08 09:01:44 MarkDuplicates Tracking 1674382 as yet unmatched pairs. 80853 records in RAM.
INFO 2026-06-08 09:01:46 MarkDuplicates Read 99,000,000 records. Elapsed time: 00:03:13s. Time for last 1,000,000: 1s. Last read position: chr2:203,440,047
INFO 2026-06-08 09:01:46 MarkDuplicates Tracking 1671142 as yet unmatched pairs. 77576 records in RAM.
INFO 2026-06-08 09:01:48 MarkDuplicates Read 100,000,000 records. Elapsed time: 00:03:15s. Time for last 1,000,000: 1s. Last read position: chr2:215,361,514
INFO 2026-06-08 09:01:48 MarkDuplicates Tracking 1719383 as yet unmatched pairs. 125793 records in RAM.
INFO 2026-06-08 09:01:49 MarkDuplicates Read 101,000,000 records. Elapsed time: 00:03:16s. Time for last 1,000,000: 1s. Last read position: chr2:215,364,933
INFO 2026-06-08 09:01:49 MarkDuplicates Tracking 1699562 as yet unmatched pairs. 105968 records in RAM.
INFO 2026-06-08 09:01:52 MarkDuplicates Read 102,000,000 records. Elapsed time: 00:03:18s. Time for last 1,000,000: 2s. Last read position: chr2:215,370,328
INFO 2026-06-08 09:01:52 MarkDuplicates Tracking 1761681 as yet unmatched pairs. 168085 records in RAM.
INFO 2026-06-08 09:01:53 MarkDuplicates Read 103,000,000 records. Elapsed time: 00:03:20s. Time for last 1,000,000: 1s. Last read position: chr2:215,372,117
INFO 2026-06-08 09:01:53 MarkDuplicates Tracking 1719330 as yet unmatched pairs. 125724 records in RAM.
INFO 2026-06-08 09:01:55 MarkDuplicates Read 104,000,000 records. Elapsed time: 00:03:22s. Time for last 1,000,000: 1s. Last read position: chr2:215,373,326
INFO 2026-06-08 09:01:55 MarkDuplicates Tracking 1714352 as yet unmatched pairs. 120740 records in RAM.
INFO 2026-06-08 09:01:57 MarkDuplicates Read 105,000,000 records. Elapsed time: 00:03:24s. Time for last 1,000,000: 1s. Last read position: chr2:215,375,652
INFO 2026-06-08 09:01:57 MarkDuplicates Tracking 1714408 as yet unmatched pairs. 120790 records in RAM.
INFO 2026-06-08 09:01:59 MarkDuplicates Read 106,000,000 records. Elapsed time: 00:03:26s. Time for last 1,000,000: 1s. Last read position: chr2:215,379,128
INFO 2026-06-08 09:01:59 MarkDuplicates Tracking 1685397 as yet unmatched pairs. 91775 records in RAM.
INFO 2026-06-08 09:02:00 MarkDuplicates Read 107,000,000 records. Elapsed time: 00:03:27s. Time for last 1,000,000: 1s. Last read position: chr2:215,382,212
INFO 2026-06-08 09:02:00 MarkDuplicates Tracking 1701879 as yet unmatched pairs. 108221 records in RAM.
INFO 2026-06-08 09:02:02 MarkDuplicates Read 108,000,000 records. Elapsed time: 00:03:29s. Time for last 1,000,000: 2s. Last read position: chr2:215,384,868
INFO 2026-06-08 09:02:02 MarkDuplicates Tracking 1685207 as yet unmatched pairs. 91542 records in RAM.
INFO 2026-06-08 09:02:04 MarkDuplicates Read 109,000,000 records. Elapsed time: 00:03:31s. Time for last 1,000,000: 1s. Last read position: chr2:215,388,289
INFO 2026-06-08 09:02:04 MarkDuplicates Tracking 1689213 as yet unmatched pairs. 95533 records in RAM.
INFO 2026-06-08 09:02:06 MarkDuplicates Read 110,000,000 records. Elapsed time: 00:03:33s. Time for last 1,000,000: 1s. Last read position: chr2:215,397,138
INFO 2026-06-08 09:02:06 MarkDuplicates Tracking 1722905 as yet unmatched pairs. 129213 records in RAM.
INFO 2026-06-08 09:02:08 MarkDuplicates Read 111,000,000 records. Elapsed time: 00:03:35s. Time for last 1,000,000: 1s. Last read position: chr2:215,404,453
INFO 2026-06-08 09:02:08 MarkDuplicates Tracking 1675782 as yet unmatched pairs. 82090 records in RAM.
INFO 2026-06-08 09:02:10 MarkDuplicates Read 112,000,000 records. Elapsed time: 00:03:37s. Time for last 1,000,000: 1s. Last read position: chr2:215,407,135
INFO 2026-06-08 09:02:10 MarkDuplicates Tracking 1681324 as yet unmatched pairs. 87620 records in RAM.
INFO 2026-06-08 09:02:12 MarkDuplicates Read 113,000,000 records. Elapsed time: 00:03:39s. Time for last 1,000,000: 2s. Last read position: chr2:215,408,402
INFO 2026-06-08 09:02:12 MarkDuplicates Tracking 1687020 as yet unmatched pairs. 93299 records in RAM.
INFO 2026-06-08 09:02:14 MarkDuplicates Read 114,000,000 records. Elapsed time: 00:03:41s. Time for last 1,000,000: 2s. Last read position: chr2:215,410,083
INFO 2026-06-08 09:02:14 MarkDuplicates Tracking 1689078 as yet unmatched pairs. 95347 records in RAM.
INFO 2026-06-08 09:02:16 MarkDuplicates Read 115,000,000 records. Elapsed time: 00:03:43s. Time for last 1,000,000: 1s. Last read position: chr2:215,422,129
INFO 2026-06-08 09:02:16 MarkDuplicates Tracking 1644971 as yet unmatched pairs. 51205 records in RAM.
INFO 2026-06-08 09:02:18 MarkDuplicates Read 116,000,000 records. Elapsed time: 00:03:45s. Time for last 1,000,000: 1s. Last read position: chr2:215,425,094
INFO 2026-06-08 09:02:18 MarkDuplicates Tracking 1661854 as yet unmatched pairs. 68078 records in RAM.
INFO 2026-06-08 09:02:20 MarkDuplicates Read 117,000,000 records. Elapsed time: 00:03:47s. Time for last 1,000,000: 1s. Last read position: chr2:215,430,799
INFO 2026-06-08 09:02:20 MarkDuplicates Tracking 1643017 as yet unmatched pairs. 49238 records in RAM.
INFO 2026-06-08 09:02:21 MarkDuplicates Read 118,000,000 records. Elapsed time: 00:03:48s. Time for last 1,000,000: 1s. Last read position: chr2:215,434,778
INFO 2026-06-08 09:02:21 MarkDuplicates Tracking 1657661 as yet unmatched pairs. 63877 records in RAM.
INFO 2026-06-08 09:02:23 MarkDuplicates Read 119,000,000 records. Elapsed time: 00:03:50s. Time for last 1,000,000: 1s. Last read position: chr2:218,238,648
INFO 2026-06-08 09:02:23 MarkDuplicates Tracking 1620105 as yet unmatched pairs. 26310 records in RAM.
INFO 2026-06-08 09:02:25 MarkDuplicates Read 120,000,000 records. Elapsed time: 00:03:52s. Time for last 1,000,000: 1s. Last read position: chr2:219,281,725
INFO 2026-06-08 09:02:25 MarkDuplicates Tracking 1612844 as yet unmatched pairs. 19028 records in RAM.
INFO 2026-06-08 09:02:26 MarkDuplicates Read 121,000,000 records. Elapsed time: 00:03:53s. Time for last 1,000,000: 1s. Last read position: chr2:224,379,731
INFO 2026-06-08 09:02:26 MarkDuplicates Tracking 1608074 as yet unmatched pairs. 14236 records in RAM.
INFO 2026-06-08 09:02:28 MarkDuplicates Read 122,000,000 records. Elapsed time: 00:03:55s. Time for last 1,000,000: 1s. Last read position: chr2:231,461,712
INFO 2026-06-08 09:02:28 MarkDuplicates Tracking 1606608 as yet unmatched pairs. 12745 records in RAM.
INFO 2026-06-08 09:02:30 MarkDuplicates Read 123,000,000 records. Elapsed time: 00:03:57s. Time for last 1,000,000: 1s. Last read position: chr2:237,344,362
INFO 2026-06-08 09:02:30 MarkDuplicates Tracking 1605500 as yet unmatched pairs. 11622 records in RAM.
INFO 2026-06-08 09:02:32 MarkDuplicates Read 124,000,000 records. Elapsed time: 00:03:59s. Time for last 1,000,000: 1s. Last read position: chr2:237,763,748
INFO 2026-06-08 09:02:32 MarkDuplicates Tracking 1600652 as yet unmatched pairs. 6752 records in RAM.
INFO 2026-06-08 09:02:34 MarkDuplicates Read 125,000,000 records. Elapsed time: 00:04:01s. Time for last 1,000,000: 2s. Last read position: chr2:241,255,055
INFO 2026-06-08 09:02:34 MarkDuplicates Tracking 1596461 as yet unmatched pairs. 2530 records in RAM.
INFO 2026-06-08 09:02:36 MarkDuplicates Read 126,000,000 records. Elapsed time: 00:04:03s. Time for last 1,000,000: 2s. Last read position: chr3:9,933,439
INFO 2026-06-08 09:02:36 MarkDuplicates Tracking 1592247 as yet unmatched pairs. 92253 records in RAM.
INFO 2026-06-08 09:02:38 MarkDuplicates Read 127,000,000 records. Elapsed time: 00:04:05s. Time for last 1,000,000: 1s. Last read position: chr3:16,195,808
INFO 2026-06-08 09:02:38 MarkDuplicates Tracking 1588800 as yet unmatched pairs. 88780 records in RAM.
INFO 2026-06-08 09:02:39 MarkDuplicates Read 128,000,000 records. Elapsed time: 00:04:06s. Time for last 1,000,000: 1s. Last read position: chr3:37,326,831
INFO 2026-06-08 09:02:39 MarkDuplicates Tracking 1586057 as yet unmatched pairs. 85991 records in RAM.
INFO 2026-06-08 09:02:41 MarkDuplicates Read 129,000,000 records. Elapsed time: 00:04:08s. Time for last 1,000,000: 1s. Last read position: chr3:43,561,375
INFO 2026-06-08 09:02:41 MarkDuplicates Tracking 1583066 as yet unmatched pairs. 82980 records in RAM.
INFO 2026-06-08 09:02:43 MarkDuplicates Read 130,000,000 records. Elapsed time: 00:04:10s. Time for last 1,000,000: 1s. Last read position: chr3:47,918,733
INFO 2026-06-08 09:02:43 MarkDuplicates Tracking 1581942 as yet unmatched pairs. 81839 records in RAM.
INFO 2026-06-08 09:02:45 MarkDuplicates Read 131,000,000 records. Elapsed time: 00:04:12s. Time for last 1,000,000: 2s. Last read position: chr3:48,573,320
INFO 2026-06-08 09:02:45 MarkDuplicates Tracking 1587919 as yet unmatched pairs. 87804 records in RAM.
INFO 2026-06-08 09:02:48 MarkDuplicates Read 132,000,000 records. Elapsed time: 00:04:15s. Time for last 1,000,000: 2s. Last read position: chr3:48,587,818
INFO 2026-06-08 09:02:48 MarkDuplicates Tracking 1575870 as yet unmatched pairs. 75742 records in RAM.
INFO 2026-06-08 09:02:50 MarkDuplicates Read 133,000,000 records. Elapsed time: 00:04:17s. Time for last 1,000,000: 1s. Last read position: chr3:49,076,707
INFO 2026-06-08 09:02:50 MarkDuplicates Tracking 1567329 as yet unmatched pairs. 67185 records in RAM.
INFO 2026-06-08 09:02:51 MarkDuplicates Read 134,000,000 records. Elapsed time: 00:04:18s. Time for last 1,000,000: 1s. Last read position: chr3:50,252,121
INFO 2026-06-08 09:02:51 MarkDuplicates Tracking 1566867 as yet unmatched pairs. 66698 records in RAM.
INFO 2026-06-08 09:02:53 MarkDuplicates Read 135,000,000 records. Elapsed time: 00:04:20s. Time for last 1,000,000: 1s. Last read position: chr3:52,505,348
INFO 2026-06-08 09:02:53 MarkDuplicates Tracking 1561889 as yet unmatched pairs. 61693 records in RAM.
INFO 2026-06-08 09:02:55 MarkDuplicates Read 136,000,000 records. Elapsed time: 00:04:22s. Time for last 1,000,000: 1s. Last read position: chr3:56,666,285
INFO 2026-06-08 09:02:55 MarkDuplicates Tracking 1556727 as yet unmatched pairs. 56496 records in RAM.
INFO 2026-06-08 09:02:57 MarkDuplicates Read 137,000,000 records. Elapsed time: 00:04:24s. Time for last 1,000,000: 1s. Last read position: chr3:66,386,267
INFO 2026-06-08 09:02:57 MarkDuplicates Tracking 1553616 as yet unmatched pairs. 53350 records in RAM.
INFO 2026-06-08 09:02:58 MarkDuplicates Read 138,000,000 records. Elapsed time: 00:04:25s. Time for last 1,000,000: 1s. Last read position: chr3:99,848,643
INFO 2026-06-08 09:02:58 MarkDuplicates Tracking 1552693 as yet unmatched pairs. 52399 records in RAM.
INFO 2026-06-08 09:03:00 MarkDuplicates Read 139,000,000 records. Elapsed time: 00:04:27s. Time for last 1,000,000: 1s. Last read position: chr3:101,853,472
INFO 2026-06-08 09:03:00 MarkDuplicates Tracking 1548942 as yet unmatched pairs. 48635 records in RAM.
INFO 2026-06-08 09:03:02 MarkDuplicates Read 140,000,000 records. Elapsed time: 00:04:29s. Time for last 1,000,000: 1s. Last read position: chr3:113,012,740
INFO 2026-06-08 09:03:02 MarkDuplicates Tracking 1545417 as yet unmatched pairs. 45077 records in RAM.
INFO 2026-06-08 09:03:04 MarkDuplicates Read 141,000,000 records. Elapsed time: 00:04:31s. Time for last 1,000,000: 1s. Last read position: chr3:122,055,496
INFO 2026-06-08 09:03:04 MarkDuplicates Tracking 1542445 as yet unmatched pairs. 42083 records in RAM.
INFO 2026-06-08 09:03:06 MarkDuplicates Read 142,000,000 records. Elapsed time: 00:04:33s. Time for last 1,000,000: 2s. Last read position: chr3:125,232,536
INFO 2026-06-08 09:03:06 MarkDuplicates Tracking 1539242 as yet unmatched pairs. 38868 records in RAM.
INFO 2026-06-08 09:03:08 MarkDuplicates Read 143,000,000 records. Elapsed time: 00:04:35s. Time for last 1,000,000: 1s. Last read position: chr3:128,067,053
INFO 2026-06-08 09:03:08 MarkDuplicates Tracking 1541028 as yet unmatched pairs. 40642 records in RAM.
INFO 2026-06-08 09:03:10 MarkDuplicates Read 144,000,000 records. Elapsed time: 00:04:37s. Time for last 1,000,000: 1s. Last read position: chr3:129,562,824
INFO 2026-06-08 09:03:10 MarkDuplicates Tracking 1532637 as yet unmatched pairs. 32228 records in RAM.
INFO 2026-06-08 09:03:11 MarkDuplicates Read 145,000,000 records. Elapsed time: 00:04:38s. Time for last 1,000,000: 1s. Last read position: chr3:134,370,878
INFO 2026-06-08 09:03:11 MarkDuplicates Tracking 1529503 as yet unmatched pairs. 29079 records in RAM.
INFO 2026-06-08 09:03:13 MarkDuplicates Read 146,000,000 records. Elapsed time: 00:04:40s. Time for last 1,000,000: 1s. Last read position: chr3:142,312,599
INFO 2026-06-08 09:03:13 MarkDuplicates Tracking 1526460 as yet unmatched pairs. 26006 records in RAM.
INFO 2026-06-08 09:03:15 MarkDuplicates Read 147,000,000 records. Elapsed time: 00:04:42s. Time for last 1,000,000: 1s. Last read position: chr3:150,544,427
INFO 2026-06-08 09:03:15 MarkDuplicates Tracking 1526108 as yet unmatched pairs. 25632 records in RAM.
INFO 2026-06-08 09:03:16 MarkDuplicates Read 148,000,000 records. Elapsed time: 00:04:43s. Time for last 1,000,000: 1s. Last read position: chr3:159,866,228
INFO 2026-06-08 09:03:16 MarkDuplicates Tracking 1520114 as yet unmatched pairs. 19615 records in RAM.
INFO 2026-06-08 09:03:18 MarkDuplicates Read 149,000,000 records. Elapsed time: 00:04:45s. Time for last 1,000,000: 1s. Last read position: chr3:172,633,812
INFO 2026-06-08 09:03:18 MarkDuplicates Tracking 1517256 as yet unmatched pairs. 16736 records in RAM.
INFO 2026-06-08 09:03:20 MarkDuplicates Read 150,000,000 records. Elapsed time: 00:04:47s. Time for last 1,000,000: 1s. Last read position: chr3:183,804,157
INFO 2026-06-08 09:03:20 MarkDuplicates Tracking 1514637 as yet unmatched pairs. 14100 records in RAM.
INFO 2026-06-08 09:03:22 MarkDuplicates Read 151,000,000 records. Elapsed time: 00:04:49s. Time for last 1,000,000: 1s. Last read position: chr3:184,316,129
INFO 2026-06-08 09:03:22 MarkDuplicates Tracking 1516134 as yet unmatched pairs. 15582 records in RAM.
INFO 2026-06-08 09:03:23 MarkDuplicates Read 152,000,000 records. Elapsed time: 00:04:50s. Time for last 1,000,000: 1s. Last read position: chr3:186,785,047
INFO 2026-06-08 09:03:23 MarkDuplicates Tracking 1509909 as yet unmatched pairs. 9336 records in RAM.
INFO 2026-06-08 09:03:25 MarkDuplicates Read 153,000,000 records. Elapsed time: 00:04:52s. Time for last 1,000,000: 1s. Last read position: chr3:193,647,080
INFO 2026-06-08 09:03:25 MarkDuplicates Tracking 1505707 as yet unmatched pairs. 5102 records in RAM.
INFO 2026-06-08 09:03:27 MarkDuplicates Read 154,000,000 records. Elapsed time: 00:04:54s. Time for last 1,000,000: 1s. Last read position: chr3:196,900,025
INFO 2026-06-08 09:03:27 MarkDuplicates Tracking 1502257 as yet unmatched pairs. 1625 records in RAM.
INFO 2026-06-08 09:03:29 MarkDuplicates Read 155,000,000 records. Elapsed time: 00:04:56s. Time for last 1,000,000: 1s. Last read position: chr4:1,238,292
INFO 2026-06-08 09:03:29 MarkDuplicates Tracking 1500293 as yet unmatched pairs. 47201 records in RAM.
INFO 2026-06-08 09:03:31 MarkDuplicates Read 156,000,000 records. Elapsed time: 00:04:58s. Time for last 1,000,000: 1s. Last read position: chr4:2,909,158
INFO 2026-06-08 09:03:31 MarkDuplicates Tracking 1496319 as yet unmatched pairs. 43206 records in RAM.
INFO 2026-06-08 09:03:32 MarkDuplicates Read 157,000,000 records. Elapsed time: 00:04:59s. Time for last 1,000,000: 1s. Last read position: chr4:6,609,280
INFO 2026-06-08 09:03:32 MarkDuplicates Tracking 1492659 as yet unmatched pairs. 39532 records in RAM.
INFO 2026-06-08 09:03:34 MarkDuplicates Read 158,000,000 records. Elapsed time: 00:05:01s. Time for last 1,000,000: 1s. Last read position: chr4:10,077,759
INFO 2026-06-08 09:03:34 MarkDuplicates Tracking 1491316 as yet unmatched pairs. 38172 records in RAM.
INFO 2026-06-08 09:03:35 MarkDuplicates Read 159,000,000 records. Elapsed time: 00:05:02s. Time for last 1,000,000: 1s. Last read position: chr4:25,255,137
INFO 2026-06-08 09:03:35 MarkDuplicates Tracking 1485381 as yet unmatched pairs. 32227 records in RAM.
INFO 2026-06-08 09:03:37 MarkDuplicates Read 160,000,000 records. Elapsed time: 00:05:04s. Time for last 1,000,000: 2s. Last read position: chr4:39,457,646
INFO 2026-06-08 09:03:37 MarkDuplicates Tracking 1485049 as yet unmatched pairs. 31878 records in RAM.
INFO 2026-06-08 09:03:40 MarkDuplicates Read 161,000,000 records. Elapsed time: 00:05:07s. Time for last 1,000,000: 2s. Last read position: chr4:48,681,060
INFO 2026-06-08 09:03:40 MarkDuplicates Tracking 1478980 as yet unmatched pairs. 25795 records in RAM.
INFO 2026-06-08 09:03:41 MarkDuplicates Read 162,000,000 records. Elapsed time: 00:05:08s. Time for last 1,000,000: 1s. Last read position: chr4:68,322,763
INFO 2026-06-08 09:03:41 MarkDuplicates Tracking 1476371 as yet unmatched pairs. 23162 records in RAM.
INFO 2026-06-08 09:03:43 MarkDuplicates Read 163,000,000 records. Elapsed time: 00:05:10s. Time for last 1,000,000: 1s. Last read position: chr4:76,195,828
INFO 2026-06-08 09:03:43 MarkDuplicates Tracking 1474067 as yet unmatched pairs. 20836 records in RAM.
INFO 2026-06-08 09:03:45 MarkDuplicates Read 164,000,000 records. Elapsed time: 00:05:12s. Time for last 1,000,000: 2s. Last read position: chr4:84,753,713
INFO 2026-06-08 09:03:45 MarkDuplicates Tracking 1470303 as yet unmatched pairs. 17050 records in RAM.
INFO 2026-06-08 09:03:47 MarkDuplicates Read 165,000,000 records. Elapsed time: 00:05:14s. Time for last 1,000,000: 1s. Last read position: chr4:99,072,352
INFO 2026-06-08 09:03:47 MarkDuplicates Tracking 1468634 as yet unmatched pairs. 15367 records in RAM.
INFO 2026-06-08 09:03:49 MarkDuplicates Read 166,000,000 records. Elapsed time: 00:05:16s. Time for last 1,000,000: 1s. Last read position: chr4:109,714,389
INFO 2026-06-08 09:03:49 MarkDuplicates Tracking 1464909 as yet unmatched pairs. 11611 records in RAM.
INFO 2026-06-08 09:03:51 MarkDuplicates Read 167,000,000 records. Elapsed time: 00:05:18s. Time for last 1,000,000: 2s. Last read position: chr4:125,318,071
INFO 2026-06-08 09:03:51 MarkDuplicates Tracking 1461724 as yet unmatched pairs. 8409 records in RAM.
INFO 2026-06-08 09:03:53 MarkDuplicates Read 168,000,000 records. Elapsed time: 00:05:20s. Time for last 1,000,000: 1s. Last read position: chr4:151,100,581
INFO 2026-06-08 09:03:53 MarkDuplicates Tracking 1463159 as yet unmatched pairs. 9825 records in RAM.
INFO 2026-06-08 09:03:55 MarkDuplicates Read 169,000,000 records. Elapsed time: 00:05:22s. Time for last 1,000,000: 1s. Last read position: chr4:173,373,424
INFO 2026-06-08 09:03:55 MarkDuplicates Tracking 1455927 as yet unmatched pairs. 2560 records in RAM.
INFO 2026-06-08 09:03:57 MarkDuplicates Read 170,000,000 records. Elapsed time: 00:05:24s. Time for last 1,000,000: 2s. Last read position: chr5:453,447
INFO 2026-06-08 09:03:57 MarkDuplicates Tracking 1453220 as yet unmatched pairs. 72369 records in RAM.
INFO 2026-06-08 09:03:59 MarkDuplicates Read 171,000,000 records. Elapsed time: 00:05:26s. Time for last 1,000,000: 1s. Last read position: chr5:10,410,180
INFO 2026-06-08 09:03:59 MarkDuplicates Tracking 1450442 as yet unmatched pairs. 69540 records in RAM.
INFO 2026-06-08 09:04:00 MarkDuplicates Read 172,000,000 records. Elapsed time: 00:05:27s. Time for last 1,000,000: 1s. Last read position: chr5:14,419,884
INFO 2026-06-08 09:04:00 MarkDuplicates Tracking 1451012 as yet unmatched pairs. 70084 records in RAM.
INFO 2026-06-08 09:04:02 MarkDuplicates Read 173,000,000 records. Elapsed time: 00:05:29s. Time for last 1,000,000: 1s. Last read position: chr5:17,275,323
INFO 2026-06-08 09:04:02 MarkDuplicates Tracking 1445867 as yet unmatched pairs. 64924 records in RAM.
INFO 2026-06-08 09:04:04 MarkDuplicates Read 174,000,000 records. Elapsed time: 00:05:31s. Time for last 1,000,000: 1s. Last read position: chr5:37,064,693
INFO 2026-06-08 09:04:04 MarkDuplicates Tracking 1440531 as yet unmatched pairs. 59566 records in RAM.
INFO 2026-06-08 09:04:06 MarkDuplicates Read 175,000,000 records. Elapsed time: 00:05:33s. Time for last 1,000,000: 1s. Last read position: chr5:43,651,773
INFO 2026-06-08 09:04:06 MarkDuplicates Tracking 1437707 as yet unmatched pairs. 56729 records in RAM.
INFO 2026-06-08 09:04:07 MarkDuplicates Read 176,000,000 records. Elapsed time: 00:05:34s. Time for last 1,000,000: 1s. Last read position: chr5:67,165,523
INFO 2026-06-08 09:04:07 MarkDuplicates Tracking 1434486 as yet unmatched pairs. 53486 records in RAM.
INFO 2026-06-08 09:04:09 MarkDuplicates Read 177,000,000 records. Elapsed time: 00:05:36s. Time for last 1,000,000: 1s. Last read position: chr5:76,695,595
INFO 2026-06-08 09:04:09 MarkDuplicates Tracking 1431781 as yet unmatched pairs. 50752 records in RAM.
INFO 2026-06-08 09:04:11 MarkDuplicates Read 178,000,000 records. Elapsed time: 00:05:38s. Time for last 1,000,000: 1s. Last read position: chr5:83,541,470
INFO 2026-06-08 09:04:11 MarkDuplicates Tracking 1430666 as yet unmatched pairs. 49607 records in RAM.
INFO 2026-06-08 09:04:12 MarkDuplicates Read 179,000,000 records. Elapsed time: 00:05:39s. Time for last 1,000,000: 1s. Last read position: chr5:103,096,703
INFO 2026-06-08 09:04:12 MarkDuplicates Tracking 1426332 as yet unmatched pairs. 45228 records in RAM.
INFO 2026-06-08 09:04:14 MarkDuplicates Read 180,000,000 records. Elapsed time: 00:05:41s. Time for last 1,000,000: 1s. Last read position: chr5:131,651,914
INFO 2026-06-08 09:04:14 MarkDuplicates Tracking 1423589 as yet unmatched pairs. 42464 records in RAM.
INFO 2026-06-08 09:04:16 MarkDuplicates Read 181,000,000 records. Elapsed time: 00:05:43s. Time for last 1,000,000: 1s. Last read position: chr5:136,046,487
INFO 2026-06-08 09:04:16 MarkDuplicates Tracking 1424110 as yet unmatched pairs. 42962 records in RAM.
INFO 2026-06-08 09:04:17 MarkDuplicates Read 182,000,000 records. Elapsed time: 00:05:44s. Time for last 1,000,000: 1s. Last read position: chr5:139,307,412
INFO 2026-06-08 09:04:17 MarkDuplicates Tracking 1417620 as yet unmatched pairs. 36452 records in RAM.
INFO 2026-06-08 09:04:19 MarkDuplicates Read 183,000,000 records. Elapsed time: 00:05:46s. Time for last 1,000,000: 1s. Last read position: chr5:141,494,803
INFO 2026-06-08 09:04:19 MarkDuplicates Tracking 1415638 as yet unmatched pairs. 34444 records in RAM.
INFO 2026-06-08 09:04:21 MarkDuplicates Read 184,000,000 records. Elapsed time: 00:05:48s. Time for last 1,000,000: 1s. Last read position: chr5:150,070,456
INFO 2026-06-08 09:04:21 MarkDuplicates Tracking 1411407 as yet unmatched pairs. 30205 records in RAM.
INFO 2026-06-08 09:04:23 MarkDuplicates Read 185,000,000 records. Elapsed time: 00:05:50s. Time for last 1,000,000: 2s. Last read position: chr5:150,402,234
INFO 2026-06-08 09:04:23 MarkDuplicates Tracking 1470078 as yet unmatched pairs. 88862 records in RAM.
INFO 2026-06-08 09:04:25 MarkDuplicates Read 186,000,000 records. Elapsed time: 00:05:52s. Time for last 1,000,000: 2s. Last read position: chr5:150,405,167
INFO 2026-06-08 09:04:25 MarkDuplicates Tracking 1451555 as yet unmatched pairs. 70336 records in RAM.
INFO 2026-06-08 09:04:27 MarkDuplicates Read 187,000,000 records. Elapsed time: 00:05:54s. Time for last 1,000,000: 1s. Last read position: chr5:150,649,931
INFO 2026-06-08 09:04:27 MarkDuplicates Tracking 1403377 as yet unmatched pairs. 22147 records in RAM.
INFO 2026-06-08 09:04:29 MarkDuplicates Read 188,000,000 records. Elapsed time: 00:05:56s. Time for last 1,000,000: 1s. Last read position: chr5:151,673,129
INFO 2026-06-08 09:04:29 MarkDuplicates Tracking 1400589 as yet unmatched pairs. 19324 records in RAM.
INFO 2026-06-08 09:04:30 MarkDuplicates Read 189,000,000 records. Elapsed time: 00:05:57s. Time for last 1,000,000: 1s. Last read position: chr5:168,262,495
INFO 2026-06-08 09:04:30 MarkDuplicates Tracking 1395171 as yet unmatched pairs. 13882 records in RAM.
INFO 2026-06-08 09:04:32 MarkDuplicates Read 190,000,000 records. Elapsed time: 00:05:59s. Time for last 1,000,000: 1s. Last read position: chr5:172,768,756
INFO 2026-06-08 09:04:32 MarkDuplicates Tracking 1393521 as yet unmatched pairs. 12204 records in RAM.
INFO 2026-06-08 09:04:34 MarkDuplicates Read 191,000,000 records. Elapsed time: 00:06:01s. Time for last 1,000,000: 1s. Last read position: chr5:177,503,276
INFO 2026-06-08 09:04:34 MarkDuplicates Tracking 1387941 as yet unmatched pairs. 6591 records in RAM.
INFO 2026-06-08 09:04:35 MarkDuplicates Read 192,000,000 records. Elapsed time: 00:06:02s. Time for last 1,000,000: 1s. Last read position: chr5:179,822,937
INFO 2026-06-08 09:04:35 MarkDuplicates Tracking 1389892 as yet unmatched pairs. 8516 records in RAM.
INFO 2026-06-08 09:04:38 MarkDuplicates Read 193,000,000 records. Elapsed time: 00:06:05s. Time for last 1,000,000: 2s. Last read position: chr6:572,562
INFO 2026-06-08 09:04:38 MarkDuplicates Tracking 1381524 as yet unmatched pairs. 93002 records in RAM.
INFO 2026-06-08 09:04:40 MarkDuplicates Read 194,000,000 records. Elapsed time: 00:06:07s. Time for last 1,000,000: 1s. Last read position: chr6:7,229,594
INFO 2026-06-08 09:04:40 MarkDuplicates Tracking 1378769 as yet unmatched pairs. 90213 records in RAM.
INFO 2026-06-08 09:04:41 MarkDuplicates Read 195,000,000 records. Elapsed time: 00:06:08s. Time for last 1,000,000: 1s. Last read position: chr6:7,886,019
INFO 2026-06-08 09:04:41 MarkDuplicates Tracking 1376161 as yet unmatched pairs. 87595 records in RAM.
INFO 2026-06-08 09:04:43 MarkDuplicates Read 196,000,000 records. Elapsed time: 00:06:10s. Time for last 1,000,000: 1s. Last read position: chr6:18,249,758
INFO 2026-06-08 09:04:43 MarkDuplicates Tracking 1374186 as yet unmatched pairs. 85586 records in RAM.
INFO 2026-06-08 09:04:45 MarkDuplicates Read 197,000,000 records. Elapsed time: 00:06:12s. Time for last 1,000,000: 1s. Last read position: chr6:26,270,962
INFO 2026-06-08 09:04:45 MarkDuplicates Tracking 1369974 as yet unmatched pairs. 81366 records in RAM.
INFO 2026-06-08 09:04:46 MarkDuplicates Read 198,000,000 records. Elapsed time: 00:06:13s. Time for last 1,000,000: 1s. Last read position: chr6:29,888,729
INFO 2026-06-08 09:04:46 MarkDuplicates Tracking 1367094 as yet unmatched pairs. 78462 records in RAM.
INFO 2026-06-08 09:04:48 MarkDuplicates Read 199,000,000 records. Elapsed time: 00:06:15s. Time for last 1,000,000: 1s. Last read position: chr6:30,655,186
INFO 2026-06-08 09:04:48 MarkDuplicates Tracking 1363715 as yet unmatched pairs. 75078 records in RAM.
INFO 2026-06-08 09:04:50 MarkDuplicates Read 200,000,000 records. Elapsed time: 00:06:17s. Time for last 1,000,000: 1s. Last read position: chr6:31,270,305
INFO 2026-06-08 09:04:50 MarkDuplicates Tracking 1366321 as yet unmatched pairs. 77673 records in RAM.
INFO 2026-06-08 09:04:51 MarkDuplicates Read 201,000,000 records. Elapsed time: 00:06:18s. Time for last 1,000,000: 1s. Last read position: chr6:31,632,754
INFO 2026-06-08 09:04:51 MarkDuplicates Tracking 1357694 as yet unmatched pairs. 69041 records in RAM.
INFO 2026-06-08 09:04:53 MarkDuplicates Read 202,000,000 records. Elapsed time: 00:06:20s. Time for last 1,000,000: 1s. Last read position: chr6:31,816,453
INFO 2026-06-08 09:04:53 MarkDuplicates Tracking 1354593 as yet unmatched pairs. 65924 records in RAM.
INFO 2026-06-08 09:04:55 MarkDuplicates Read 203,000,000 records. Elapsed time: 00:06:22s. Time for last 1,000,000: 1s. Last read position: chr6:31,829,381
INFO 2026-06-08 09:04:55 MarkDuplicates Tracking 1356641 as yet unmatched pairs. 67962 records in RAM.
INFO 2026-06-08 09:04:57 MarkDuplicates Read 204,000,000 records. Elapsed time: 00:06:24s. Time for last 1,000,000: 1s. Last read position: chr6:32,197,530
INFO 2026-06-08 09:04:57 MarkDuplicates Tracking 1349591 as yet unmatched pairs. 60904 records in RAM.
INFO 2026-06-08 09:04:59 MarkDuplicates Read 205,000,000 records. Elapsed time: 00:06:26s. Time for last 1,000,000: 1s. Last read position: chr6:32,980,603
INFO 2026-06-08 09:04:59 MarkDuplicates Tracking 1347724 as yet unmatched pairs. 59022 records in RAM.
INFO 2026-06-08 09:05:01 MarkDuplicates Read 206,000,000 records. Elapsed time: 00:06:28s. Time for last 1,000,000: 2s. Last read position: chr6:33,415,995
INFO 2026-06-08 09:05:01 MarkDuplicates Tracking 1344646 as yet unmatched pairs. 55929 records in RAM.
INFO 2026-06-08 09:05:03 MarkDuplicates Read 207,000,000 records. Elapsed time: 00:06:30s. Time for last 1,000,000: 1s. Last read position: chr6:35,575,822
INFO 2026-06-08 09:05:03 MarkDuplicates Tracking 1340461 as yet unmatched pairs. 51725 records in RAM.
INFO 2026-06-08 09:05:05 MarkDuplicates Read 208,000,000 records. Elapsed time: 00:06:32s. Time for last 1,000,000: 1s. Last read position: chr6:41,787,814
INFO 2026-06-08 09:05:05 MarkDuplicates Tracking 1338722 as yet unmatched pairs. 49966 records in RAM.
INFO 2026-06-08 09:05:06 MarkDuplicates Read 209,000,000 records. Elapsed time: 00:06:33s. Time for last 1,000,000: 1s. Last read position: chr6:43,433,125
INFO 2026-06-08 09:05:06 MarkDuplicates Tracking 1333856 as yet unmatched pairs. 45071 records in RAM.
INFO 2026-06-08 09:05:08 MarkDuplicates Read 210,000,000 records. Elapsed time: 00:06:35s. Time for last 1,000,000: 1s. Last read position: chr6:44,256,707
INFO 2026-06-08 09:05:08 MarkDuplicates Tracking 1331081 as yet unmatched pairs. 42284 records in RAM.
INFO 2026-06-08 09:05:10 MarkDuplicates Read 211,000,000 records. Elapsed time: 00:06:37s. Time for last 1,000,000: 1s. Last read position: chr6:56,616,225
INFO 2026-06-08 09:05:10 MarkDuplicates Tracking 1329206 as yet unmatched pairs. 40374 records in RAM.
INFO 2026-06-08 09:05:11 MarkDuplicates Read 212,000,000 records. Elapsed time: 00:06:38s. Time for last 1,000,000: 1s. Last read position: chr6:57,147,506
INFO 2026-06-08 09:05:11 MarkDuplicates Tracking 1324492 as yet unmatched pairs. 35658 records in RAM.
INFO 2026-06-08 09:05:13 MarkDuplicates Read 213,000,000 records. Elapsed time: 00:06:40s. Time for last 1,000,000: 1s. Last read position: chr6:75,237,945
INFO 2026-06-08 09:05:13 MarkDuplicates Tracking 1323503 as yet unmatched pairs. 34651 records in RAM.
INFO 2026-06-08 09:05:15 MarkDuplicates Read 214,000,000 records. Elapsed time: 00:06:42s. Time for last 1,000,000: 1s. Last read position: chr6:89,080,891
INFO 2026-06-08 09:05:15 MarkDuplicates Tracking 1320600 as yet unmatched pairs. 31725 records in RAM.
INFO 2026-06-08 09:05:17 MarkDuplicates Read 215,000,000 records. Elapsed time: 00:06:44s. Time for last 1,000,000: 1s. Last read position: chr6:107,913,410
INFO 2026-06-08 09:05:17 MarkDuplicates Tracking 1316403 as yet unmatched pairs. 27504 records in RAM.
INFO 2026-06-08 09:05:18 MarkDuplicates Read 216,000,000 records. Elapsed time: 00:06:45s. Time for last 1,000,000: 1s. Last read position: chr6:116,258,739
INFO 2026-06-08 09:05:18 MarkDuplicates Tracking 1312273 as yet unmatched pairs. 23361 records in RAM.
INFO 2026-06-08 09:05:20 MarkDuplicates Read 217,000,000 records. Elapsed time: 00:06:47s. Time for last 1,000,000: 1s. Last read position: chr6:129,049,939
INFO 2026-06-08 09:05:20 MarkDuplicates Tracking 1309321 as yet unmatched pairs. 20395 records in RAM.
INFO 2026-06-08 09:05:22 MarkDuplicates Read 218,000,000 records. Elapsed time: 00:06:49s. Time for last 1,000,000: 1s. Last read position: chr6:138,092,029
INFO 2026-06-08 09:05:22 MarkDuplicates Tracking 1311914 as yet unmatched pairs. 22979 records in RAM.
INFO 2026-06-08 09:05:24 MarkDuplicates Read 219,000,000 records. Elapsed time: 00:06:51s. Time for last 1,000,000: 2s. Last read position: chr6:149,378,812
INFO 2026-06-08 09:05:24 MarkDuplicates Tracking 1303877 as yet unmatched pairs. 14922 records in RAM.
INFO 2026-06-08 09:05:26 MarkDuplicates Read 220,000,000 records. Elapsed time: 00:06:53s. Time for last 1,000,000: 1s. Last read position: chr6:152,321,373
INFO 2026-06-08 09:05:26 MarkDuplicates Tracking 1300212 as yet unmatched pairs. 11227 records in RAM.
INFO 2026-06-08 09:05:28 MarkDuplicates Read 221,000,000 records. Elapsed time: 00:06:55s. Time for last 1,000,000: 1s. Last read position: chr6:158,784,654
INFO 2026-06-08 09:05:28 MarkDuplicates Tracking 1301807 as yet unmatched pairs. 12801 records in RAM.
INFO 2026-06-08 09:05:29 MarkDuplicates Read 222,000,000 records. Elapsed time: 00:06:56s. Time for last 1,000,000: 1s. Last read position: chr6:160,079,668
INFO 2026-06-08 09:05:29 MarkDuplicates Tracking 1294286 as yet unmatched pairs. 5246 records in RAM.
INFO 2026-06-08 09:05:31 MarkDuplicates Read 223,000,000 records. Elapsed time: 00:06:58s. Time for last 1,000,000: 1s. Last read position: chr6:169,232,789
INFO 2026-06-08 09:05:31 MarkDuplicates Tracking 1294281 as yet unmatched pairs. 5235 records in RAM.
INFO 2026-06-08 09:05:33 MarkDuplicates Read 224,000,000 records. Elapsed time: 00:07:00s. Time for last 1,000,000: 2s. Last read position: chr7:1,442,421
INFO 2026-06-08 09:05:33 MarkDuplicates Tracking 1288123 as yet unmatched pairs. 103006 records in RAM.
INFO 2026-06-08 09:05:35 MarkDuplicates Read 225,000,000 records. Elapsed time: 00:07:02s. Time for last 1,000,000: 1s. Last read position: chr7:2,662,280
INFO 2026-06-08 09:05:35 MarkDuplicates Tracking 1283103 as yet unmatched pairs. 97962 records in RAM.
INFO 2026-06-08 09:05:37 MarkDuplicates Read 226,000,000 records. Elapsed time: 00:07:04s. Time for last 1,000,000: 1s. Last read position: chr7:5,527,743
INFO 2026-06-08 09:05:37 MarkDuplicates Tracking 1299119 as yet unmatched pairs. 113964 records in RAM.
INFO 2026-06-08 09:05:39 MarkDuplicates Read 227,000,000 records. Elapsed time: 00:07:06s. Time for last 1,000,000: 1s. Last read position: chr7:5,528,487
INFO 2026-06-08 09:05:39 MarkDuplicates Tracking 1304034 as yet unmatched pairs. 118867 records in RAM.
INFO 2026-06-08 09:05:40 MarkDuplicates Read 228,000,000 records. Elapsed time: 00:07:07s. Time for last 1,000,000: 1s. Last read position: chr7:5,592,914
INFO 2026-06-08 09:05:40 MarkDuplicates Tracking 1276355 as yet unmatched pairs. 91185 records in RAM.
INFO 2026-06-08 09:05:42 MarkDuplicates Read 229,000,000 records. Elapsed time: 00:07:09s. Time for last 1,000,000: 1s. Last read position: chr7:6,692,592
INFO 2026-06-08 09:05:42 MarkDuplicates Tracking 1269620 as yet unmatched pairs. 84416 records in RAM.
INFO 2026-06-08 09:05:44 MarkDuplicates Read 230,000,000 records. Elapsed time: 00:07:11s. Time for last 1,000,000: 1s. Last read position: chr7:23,260,078
INFO 2026-06-08 09:05:44 MarkDuplicates Tracking 1268637 as yet unmatched pairs. 83404 records in RAM.
INFO 2026-06-08 09:05:46 MarkDuplicates Read 231,000,000 records. Elapsed time: 00:07:13s. Time for last 1,000,000: 1s. Last read position: chr7:30,599,972
INFO 2026-06-08 09:05:46 MarkDuplicates Tracking 1264438 as yet unmatched pairs. 79186 records in RAM.
INFO 2026-06-08 09:05:47 MarkDuplicates Read 232,000,000 records. Elapsed time: 00:07:14s. Time for last 1,000,000: 1s. Last read position: chr7:41,689,691
INFO 2026-06-08 09:05:47 MarkDuplicates Tracking 1264217 as yet unmatched pairs. 78938 records in RAM.
INFO 2026-06-08 09:05:49 MarkDuplicates Read 233,000,000 records. Elapsed time: 00:07:16s. Time for last 1,000,000: 1s. Last read position: chr7:44,116,889
INFO 2026-06-08 09:05:49 MarkDuplicates Tracking 1259597 as yet unmatched pairs. 74305 records in RAM.
INFO 2026-06-08 09:05:51 MarkDuplicates Read 234,000,000 records. Elapsed time: 00:07:18s. Time for last 1,000,000: 1s. Last read position: chr7:47,400,392
INFO 2026-06-08 09:05:51 MarkDuplicates Tracking 1254794 as yet unmatched pairs. 69489 records in RAM.
INFO 2026-06-08 09:05:53 MarkDuplicates Read 235,000,000 records. Elapsed time: 00:07:20s. Time for last 1,000,000: 2s. Last read position: chr7:55,143,366
INFO 2026-06-08 09:05:53 MarkDuplicates Tracking 1261700 as yet unmatched pairs. 76347 records in RAM.
INFO 2026-06-08 09:05:55 MarkDuplicates Read 236,000,000 records. Elapsed time: 00:07:22s. Time for last 1,000,000: 2s. Last read position: chr7:55,157,558
INFO 2026-06-08 09:05:55 MarkDuplicates Tracking 1259921 as yet unmatched pairs. 74559 records in RAM.
INFO 2026-06-08 09:05:57 MarkDuplicates Read 237,000,000 records. Elapsed time: 00:07:24s. Time for last 1,000,000: 1s. Last read position: chr7:55,174,649
INFO 2026-06-08 09:05:57 MarkDuplicates Tracking 1257365 as yet unmatched pairs. 71995 records in RAM.
INFO 2026-06-08 09:05:59 MarkDuplicates Read 238,000,000 records. Elapsed time: 00:07:26s. Time for last 1,000,000: 1s. Last read position: chr7:55,202,576
INFO 2026-06-08 09:05:59 MarkDuplicates Tracking 1251188 as yet unmatched pairs. 65803 records in RAM.
INFO 2026-06-08 09:06:00 MarkDuplicates Read 239,000,000 records. Elapsed time: 00:07:27s. Time for last 1,000,000: 1s. Last read position: chr7:72,939,389
INFO 2026-06-08 09:06:00 MarkDuplicates Tracking 1238383 as yet unmatched pairs. 52969 records in RAM.
INFO 2026-06-08 09:06:02 MarkDuplicates Read 240,000,000 records. Elapsed time: 00:07:29s. Time for last 1,000,000: 1s. Last read position: chr7:75,197,985
INFO 2026-06-08 09:06:02 MarkDuplicates Tracking 1236278 as yet unmatched pairs. 50847 records in RAM.
INFO 2026-06-08 09:06:04 MarkDuplicates Read 241,000,000 records. Elapsed time: 00:07:31s. Time for last 1,000,000: 1s. Last read position: chr7:76,303,854
INFO 2026-06-08 09:06:04 MarkDuplicates Tracking 1244545 as yet unmatched pairs. 59096 records in RAM.
INFO 2026-06-08 09:06:06 MarkDuplicates Read 242,000,000 records. Elapsed time: 00:07:33s. Time for last 1,000,000: 1s. Last read position: chr7:90,596,506
INFO 2026-06-08 09:06:06 MarkDuplicates Tracking 1229400 as yet unmatched pairs. 43923 records in RAM.
INFO 2026-06-08 09:06:08 MarkDuplicates Read 243,000,000 records. Elapsed time: 00:07:35s. Time for last 1,000,000: 1s. Last read position: chr7:94,405,714
INFO 2026-06-08 09:06:08 MarkDuplicates Tracking 1233944 as yet unmatched pairs. 48440 records in RAM.
INFO 2026-06-08 09:07:10 MarkDuplicates Read 244,000,000 records. Elapsed time: 00:08:37s. Time for last 1,000,000: 62s. Last read position: chr7:94,421,904
INFO 2026-06-08 09:07:10 MarkDuplicates Tracking 1231853 as yet unmatched pairs. 46334 records in RAM.
INFO 2026-06-08 09:07:12 MarkDuplicates Read 245,000,000 records. Elapsed time: 00:08:39s. Time for last 1,000,000: 1s. Last read position: chr7:98,193,171
INFO 2026-06-08 09:07:12 MarkDuplicates Tracking 1219872 as yet unmatched pairs. 34329 records in RAM.
INFO 2026-06-08 09:07:13 MarkDuplicates Read 246,000,000 records. Elapsed time: 00:08:40s. Time for last 1,000,000: 1s. Last read position: chr7:100,356,737
INFO 2026-06-08 09:07:13 MarkDuplicates Tracking 1216805 as yet unmatched pairs. 31229 records in RAM.
INFO 2026-06-08 09:07:15 MarkDuplicates Read 247,000,000 records. Elapsed time: 00:08:42s. Time for last 1,000,000: 1s. Last read position: chr7:101,130,571
INFO 2026-06-08 09:07:15 MarkDuplicates Tracking 1222393 as yet unmatched pairs. 36806 records in RAM.
INFO 2026-06-08 09:07:17 MarkDuplicates Read 248,000,000 records. Elapsed time: 00:08:44s. Time for last 1,000,000: 1s. Last read position: chr7:102,640,262
INFO 2026-06-08 09:07:17 MarkDuplicates Tracking 1210540 as yet unmatched pairs. 24934 records in RAM.
INFO 2026-06-08 09:07:19 MarkDuplicates Read 249,000,000 records. Elapsed time: 00:08:46s. Time for last 1,000,000: 1s. Last read position: chr7:107,929,511
INFO 2026-06-08 09:07:19 MarkDuplicates Tracking 1208257 as yet unmatched pairs. 22635 records in RAM.
INFO 2026-06-08 09:07:21 MarkDuplicates Read 250,000,000 records. Elapsed time: 00:08:48s. Time for last 1,000,000: 2s. Last read position: chr7:116,758,543
INFO 2026-06-08 09:07:21 MarkDuplicates Tracking 1207304 as yet unmatched pairs. 21656 records in RAM.
INFO 2026-06-08 09:07:23 MarkDuplicates Read 251,000,000 records. Elapsed time: 00:08:50s. Time for last 1,000,000: 1s. Last read position: chr7:127,887,909
INFO 2026-06-08 09:07:23 MarkDuplicates Tracking 1207516 as yet unmatched pairs. 21844 records in RAM.
INFO 2026-06-08 09:07:24 MarkDuplicates Read 252,000,000 records. Elapsed time: 00:08:51s. Time for last 1,000,000: 1s. Last read position: chr7:131,511,291
INFO 2026-06-08 09:07:24 MarkDuplicates Tracking 1198691 as yet unmatched pairs. 13002 records in RAM.
INFO 2026-06-08 09:07:26 MarkDuplicates Read 253,000,000 records. Elapsed time: 00:08:53s. Time for last 1,000,000: 1s. Last read position: chr7:139,716,322
INFO 2026-06-08 09:07:26 MarkDuplicates Tracking 1195709 as yet unmatched pairs. 10001 records in RAM.
INFO 2026-06-08 09:07:28 MarkDuplicates Read 254,000,000 records. Elapsed time: 00:08:55s. Time for last 1,000,000: 1s. Last read position: chr7:144,283,986
INFO 2026-06-08 09:07:28 MarkDuplicates Tracking 1193528 as yet unmatched pairs. 7785 records in RAM.
INFO 2026-06-08 09:07:30 MarkDuplicates Read 255,000,000 records. Elapsed time: 00:08:57s. Time for last 1,000,000: 2s. Last read position: chr7:151,071,941
INFO 2026-06-08 09:07:30 MarkDuplicates Tracking 1190569 as yet unmatched pairs. 4820 records in RAM.
INFO 2026-06-08 09:07:31 MarkDuplicates Read 256,000,000 records. Elapsed time: 00:08:58s. Time for last 1,000,000: 1s. Last read position: chr7:158,737,100
INFO 2026-06-08 09:07:31 MarkDuplicates Tracking 1187112 as yet unmatched pairs. 1336 records in RAM.
INFO 2026-06-08 09:07:34 MarkDuplicates Read 257,000,000 records. Elapsed time: 00:09:01s. Time for last 1,000,000: 2s. Last read position: chr8:11,847,790
INFO 2026-06-08 09:07:34 MarkDuplicates Tracking 1192763 as yet unmatched pairs. 81809 records in RAM.
INFO 2026-06-08 09:07:35 MarkDuplicates Read 258,000,000 records. Elapsed time: 00:09:02s. Time for last 1,000,000: 1s. Last read position: chr8:22,245,498
INFO 2026-06-08 09:07:35 MarkDuplicates Tracking 1180264 as yet unmatched pairs. 69290 records in RAM.
INFO 2026-06-08 09:07:38 MarkDuplicates Read 259,000,000 records. Elapsed time: 00:09:05s. Time for last 1,000,000: 2s. Last read position: chr8:27,422,252
INFO 2026-06-08 09:07:38 MarkDuplicates Tracking 1176903 as yet unmatched pairs. 65903 records in RAM.
INFO 2026-06-08 09:07:39 MarkDuplicates Read 260,000,000 records. Elapsed time: 00:09:06s. Time for last 1,000,000: 1s. Last read position: chr8:38,414,173
INFO 2026-06-08 09:07:39 MarkDuplicates Tracking 1174666 as yet unmatched pairs. 63652 records in RAM.
INFO 2026-06-08 09:07:41 MarkDuplicates Read 261,000,000 records. Elapsed time: 00:09:08s. Time for last 1,000,000: 1s. Last read position: chr8:47,737,242
INFO 2026-06-08 09:07:41 MarkDuplicates Tracking 1172281 as yet unmatched pairs. 61242 records in RAM.
INFO 2026-06-08 09:07:43 MarkDuplicates Read 262,000,000 records. Elapsed time: 00:09:10s. Time for last 1,000,000: 1s. Last read position: chr8:53,988,229
INFO 2026-06-08 09:07:43 MarkDuplicates Tracking 1167484 as yet unmatched pairs. 56437 records in RAM.
INFO 2026-06-08 09:07:45 MarkDuplicates Read 263,000,000 records. Elapsed time: 00:09:12s. Time for last 1,000,000: 2s. Last read position: chr8:65,739,588
INFO 2026-06-08 09:07:45 MarkDuplicates Tracking 1164714 as yet unmatched pairs. 53651 records in RAM.
INFO 2026-06-08 09:07:46 MarkDuplicates Read 264,000,000 records. Elapsed time: 00:09:13s. Time for last 1,000,000: 1s. Last read position: chr8:74,845,469
INFO 2026-06-08 09:07:46 MarkDuplicates Tracking 1162043 as yet unmatched pairs. 50949 records in RAM.
INFO 2026-06-08 09:07:48 MarkDuplicates Read 265,000,000 records. Elapsed time: 00:09:15s. Time for last 1,000,000: 1s. Last read position: chr8:94,930,637
INFO 2026-06-08 09:07:48 MarkDuplicates Tracking 1159055 as yet unmatched pairs. 47940 records in RAM.
INFO 2026-06-08 09:07:50 MarkDuplicates Read 266,000,000 records. Elapsed time: 00:09:17s. Time for last 1,000,000: 1s. Last read position: chr8:100,709,133
INFO 2026-06-08 09:07:50 MarkDuplicates Tracking 1161976 as yet unmatched pairs. 50842 records in RAM.
INFO 2026-06-08 09:07:51 MarkDuplicates Read 267,000,000 records. Elapsed time: 00:09:18s. Time for last 1,000,000: 1s. Last read position: chr8:102,287,405
INFO 2026-06-08 09:07:51 MarkDuplicates Tracking 1152946 as yet unmatched pairs. 41799 records in RAM.
INFO 2026-06-08 09:07:53 MarkDuplicates Read 268,000,000 records. Elapsed time: 00:09:20s. Time for last 1,000,000: 1s. Last read position: chr8:116,645,087
INFO 2026-06-08 09:07:53 MarkDuplicates Tracking 1150488 as yet unmatched pairs. 39325 records in RAM.
INFO 2026-06-08 09:07:55 MarkDuplicates Read 269,000,000 records. Elapsed time: 00:09:22s. Time for last 1,000,000: 1s. Last read position: chr8:124,320,110
INFO 2026-06-08 09:07:55 MarkDuplicates Tracking 1147928 as yet unmatched pairs. 36743 records in RAM.
INFO 2026-06-08 09:07:56 MarkDuplicates Read 270,000,000 records. Elapsed time: 00:09:23s. Time for last 1,000,000: 1s. Last read position: chr8:132,837,768
INFO 2026-06-08 09:07:56 MarkDuplicates Tracking 1143902 as yet unmatched pairs. 32700 records in RAM.
INFO 2026-06-08 09:07:58 MarkDuplicates Read 271,000,000 records. Elapsed time: 00:09:25s. Time for last 1,000,000: 1s. Last read position: chr8:133,269,845
INFO 2026-06-08 09:07:58 MarkDuplicates Tracking 1151143 as yet unmatched pairs. 39935 records in RAM.
INFO 2026-06-08 09:08:00 MarkDuplicates Read 272,000,000 records. Elapsed time: 00:09:27s. Time for last 1,000,000: 1s. Last read position: chr8:143,572,531
INFO 2026-06-08 09:08:00 MarkDuplicates Tracking 1137351 as yet unmatched pairs. 26127 records in RAM.
INFO 2026-06-08 09:08:01 MarkDuplicates Read 273,000,000 records. Elapsed time: 00:09:28s. Time for last 1,000,000: 1s. Last read position: chr8:143,859,628
INFO 2026-06-08 09:08:01 MarkDuplicates Tracking 1133269 as yet unmatched pairs. 22036 records in RAM.
INFO 2026-06-08 09:08:03 MarkDuplicates Read 274,000,000 records. Elapsed time: 00:09:30s. Time for last 1,000,000: 1s. Last read position: chr8:143,917,613
INFO 2026-06-08 09:08:03 MarkDuplicates Tracking 1139673 as yet unmatched pairs. 28438 records in RAM.
INFO 2026-06-08 09:08:04 MarkDuplicates Read 275,000,000 records. Elapsed time: 00:09:31s. Time for last 1,000,000: 1s. Last read position: chr8:143,921,490
INFO 2026-06-08 09:08:04 MarkDuplicates Tracking 1133905 as yet unmatched pairs. 22654 records in RAM.
INFO 2026-06-08 09:08:06 MarkDuplicates Read 276,000,000 records. Elapsed time: 00:09:33s. Time for last 1,000,000: 1s. Last read position: chr8:143,930,169
INFO 2026-06-08 09:08:06 MarkDuplicates Tracking 1126497 as yet unmatched pairs. 15227 records in RAM.
INFO 2026-06-08 09:08:08 MarkDuplicates Read 277,000,000 records. Elapsed time: 00:09:35s. Time for last 1,000,000: 1s. Last read position: chr8:144,099,290
INFO 2026-06-08 09:08:08 MarkDuplicates Tracking 1117525 as yet unmatched pairs. 6248 records in RAM.
INFO 2026-06-08 09:08:09 MarkDuplicates Read 278,000,000 records. Elapsed time: 00:09:36s. Time for last 1,000,000: 1s. Last read position: chr8:144,501,798
INFO 2026-06-08 09:08:09 MarkDuplicates Tracking 1113509 as yet unmatched pairs. 2224 records in RAM.
INFO 2026-06-08 09:08:12 MarkDuplicates Read 279,000,000 records. Elapsed time: 00:09:39s. Time for last 1,000,000: 2s. Last read position: chr9:14,307,476
INFO 2026-06-08 09:08:12 MarkDuplicates Tracking 1110075 as yet unmatched pairs. 66917 records in RAM.
INFO 2026-06-08 09:08:13 MarkDuplicates Read 280,000,000 records. Elapsed time: 00:09:40s. Time for last 1,000,000: 1s. Last read position: chr9:33,166,768
INFO 2026-06-08 09:08:13 MarkDuplicates Tracking 1110976 as yet unmatched pairs. 67794 records in RAM.
INFO 2026-06-08 09:08:15 MarkDuplicates Read 281,000,000 records. Elapsed time: 00:09:42s. Time for last 1,000,000: 1s. Last read position: chr9:35,107,876
INFO 2026-06-08 09:08:15 MarkDuplicates Tracking 1103297 as yet unmatched pairs. 60072 records in RAM.
INFO 2026-06-08 09:08:16 MarkDuplicates Read 282,000,000 records. Elapsed time: 00:09:43s. Time for last 1,000,000: 1s. Last read position: chr9:35,707,219
INFO 2026-06-08 09:08:16 MarkDuplicates Tracking 1103192 as yet unmatched pairs. 59960 records in RAM.
INFO 2026-06-08 09:08:18 MarkDuplicates Read 283,000,000 records. Elapsed time: 00:09:45s. Time for last 1,000,000: 1s. Last read position: chr9:35,805,509
INFO 2026-06-08 09:08:18 MarkDuplicates Tracking 1096092 as yet unmatched pairs. 52844 records in RAM.
INFO 2026-06-08 09:08:20 MarkDuplicates Read 284,000,000 records. Elapsed time: 00:09:47s. Time for last 1,000,000: 1s. Last read position: chr9:65,681,572
INFO 2026-06-08 09:08:20 MarkDuplicates Tracking 1092853 as yet unmatched pairs. 49579 records in RAM.
INFO 2026-06-08 09:08:21 MarkDuplicates Read 285,000,000 records. Elapsed time: 00:09:48s. Time for last 1,000,000: 1s. Last read position: chr9:78,301,982
INFO 2026-06-08 09:08:21 MarkDuplicates Tracking 1090539 as yet unmatched pairs. 47245 records in RAM.
INFO 2026-06-08 09:08:23 MarkDuplicates Read 286,000,000 records. Elapsed time: 00:09:50s. Time for last 1,000,000: 1s. Last read position: chr9:91,410,277
INFO 2026-06-08 09:08:23 MarkDuplicates Tracking 1088320 as yet unmatched pairs. 45013 records in RAM.
INFO 2026-06-08 09:08:25 MarkDuplicates Read 287,000,000 records. Elapsed time: 00:09:52s. Time for last 1,000,000: 1s. Last read position: chr9:97,927,363
INFO 2026-06-08 09:08:25 MarkDuplicates Tracking 1084057 as yet unmatched pairs. 40728 records in RAM.
INFO 2026-06-08 09:08:26 MarkDuplicates Read 288,000,000 records. Elapsed time: 00:09:53s. Time for last 1,000,000: 1s. Last read position: chr9:104,822,515
INFO 2026-06-08 09:08:26 MarkDuplicates Tracking 1080904 as yet unmatched pairs. 37570 records in RAM.
INFO 2026-06-08 09:08:28 MarkDuplicates Read 289,000,000 records. Elapsed time: 00:09:55s. Time for last 1,000,000: 1s. Last read position: chr9:111,897,127
INFO 2026-06-08 09:08:28 MarkDuplicates Tracking 1078037 as yet unmatched pairs. 34691 records in RAM.
INFO 2026-06-08 09:08:30 MarkDuplicates Read 290,000,000 records. Elapsed time: 00:09:57s. Time for last 1,000,000: 1s. Last read position: chr9:115,024,073
INFO 2026-06-08 09:08:30 MarkDuplicates Tracking 1079082 as yet unmatched pairs. 35723 records in RAM.
INFO 2026-06-08 09:08:31 MarkDuplicates Read 291,000,000 records. Elapsed time: 00:09:58s. Time for last 1,000,000: 1s. Last read position: chr9:115,086,053
INFO 2026-06-08 09:08:31 MarkDuplicates Tracking 1078336 as yet unmatched pairs. 34964 records in RAM.
INFO 2026-06-08 09:08:33 MarkDuplicates Read 292,000,000 records. Elapsed time: 00:10:00s. Time for last 1,000,000: 2s. Last read position: chr9:121,281,502
INFO 2026-06-08 09:08:33 MarkDuplicates Tracking 1070109 as yet unmatched pairs. 26730 records in RAM.
INFO 2026-06-08 09:08:35 MarkDuplicates Read 293,000,000 records. Elapsed time: 00:10:02s. Time for last 1,000,000: 1s. Last read position: chr9:125,237,057
INFO 2026-06-08 09:08:35 MarkDuplicates Tracking 1068541 as yet unmatched pairs. 25147 records in RAM.
INFO 2026-06-08 09:08:37 MarkDuplicates Read 294,000,000 records. Elapsed time: 00:10:04s. Time for last 1,000,000: 1s. Last read position: chr9:128,340,762
INFO 2026-06-08 09:08:37 MarkDuplicates Tracking 1061508 as yet unmatched pairs. 18108 records in RAM.
INFO 2026-06-08 09:08:39 MarkDuplicates Read 295,000,000 records. Elapsed time: 00:10:06s. Time for last 1,000,000: 2s. Last read position: chr9:130,631,945
INFO 2026-06-08 09:08:39 MarkDuplicates Tracking 1058382 as yet unmatched pairs. 14966 records in RAM.
INFO 2026-06-08 09:08:40 MarkDuplicates Read 296,000,000 records. Elapsed time: 00:10:07s. Time for last 1,000,000: 1s. Last read position: chr9:133,363,645
INFO 2026-06-08 09:08:40 MarkDuplicates Tracking 1056678 as yet unmatched pairs. 13234 records in RAM.
INFO 2026-06-08 09:08:42 MarkDuplicates Read 297,000,000 records. Elapsed time: 00:10:09s. Time for last 1,000,000: 1s. Last read position: chr9:134,798,423
INFO 2026-06-08 09:08:42 MarkDuplicates Tracking 1056171 as yet unmatched pairs. 12720 records in RAM.
INFO 2026-06-08 09:08:44 MarkDuplicates Read 298,000,000 records. Elapsed time: 00:10:11s. Time for last 1,000,000: 1s. Last read position: chr9:136,496,719
INFO 2026-06-08 09:08:44 MarkDuplicates Tracking 1047788 as yet unmatched pairs. 4325 records in RAM.
INFO 2026-06-08 09:08:46 MarkDuplicates Read 299,000,000 records. Elapsed time: 00:10:13s. Time for last 1,000,000: 1s. Last read position: chr9:138,281,811
INFO 2026-06-08 09:08:46 MarkDuplicates Tracking 1043493 as yet unmatched pairs. 18 records in RAM.
INFO 2026-06-08 09:08:48 MarkDuplicates Read 300,000,000 records. Elapsed time: 00:10:15s. Time for last 1,000,000: 2s. Last read position: chr10:5,739,735
INFO 2026-06-08 09:08:48 MarkDuplicates Tracking 1040674 as yet unmatched pairs. 62403 records in RAM.
INFO 2026-06-08 09:08:50 MarkDuplicates Read 301,000,000 records. Elapsed time: 00:10:17s. Time for last 1,000,000: 1s. Last read position: chr10:14,843,392
INFO 2026-06-08 09:08:50 MarkDuplicates Tracking 1037304 as yet unmatched pairs. 59018 records in RAM.
INFO 2026-06-08 09:08:52 MarkDuplicates Read 302,000,000 records. Elapsed time: 00:10:19s. Time for last 1,000,000: 1s. Last read position: chr10:22,328,141
INFO 2026-06-08 09:08:52 MarkDuplicates Tracking 1034224 as yet unmatched pairs. 55906 records in RAM.
INFO 2026-06-08 09:08:53 MarkDuplicates Read 303,000,000 records. Elapsed time: 00:10:20s. Time for last 1,000,000: 1s. Last read position: chr10:30,027,876
INFO 2026-06-08 09:08:53 MarkDuplicates Tracking 1031312 as yet unmatched pairs. 52967 records in RAM.
INFO 2026-06-08 09:08:55 MarkDuplicates Read 304,000,000 records. Elapsed time: 00:10:22s. Time for last 1,000,000: 1s. Last read position: chr10:32,911,551
INFO 2026-06-08 09:08:55 MarkDuplicates Tracking 1034925 as yet unmatched pairs. 56569 records in RAM.
INFO 2026-06-08 09:08:57 MarkDuplicates Read 305,000,000 records. Elapsed time: 00:10:24s. Time for last 1,000,000: 1s. Last read position: chr10:42,796,923
INFO 2026-06-08 09:08:57 MarkDuplicates Tracking 1025775 as yet unmatched pairs. 47402 records in RAM.
INFO 2026-06-08 09:08:58 MarkDuplicates Read 306,000,000 records. Elapsed time: 00:10:25s. Time for last 1,000,000: 1s. Last read position: chr10:46,390,901
INFO 2026-06-08 09:08:58 MarkDuplicates Tracking 1025140 as yet unmatched pairs. 46753 records in RAM.
INFO 2026-06-08 09:09:00 MarkDuplicates Read 307,000,000 records. Elapsed time: 00:10:27s. Time for last 1,000,000: 1s. Last read position: chr10:63,206,860
INFO 2026-06-08 09:09:00 MarkDuplicates Tracking 1020491 as yet unmatched pairs. 42093 records in RAM.
INFO 2026-06-08 09:09:02 MarkDuplicates Read 308,000,000 records. Elapsed time: 00:10:29s. Time for last 1,000,000: 1s. Last read position: chr10:71,287,713
INFO 2026-06-08 09:09:02 MarkDuplicates Tracking 1017715 as yet unmatched pairs. 39297 records in RAM.
INFO 2026-06-08 09:09:03 MarkDuplicates Read 309,000,000 records. Elapsed time: 00:10:30s. Time for last 1,000,000: 1s. Last read position: chr10:73,775,634
INFO 2026-06-08 09:09:03 MarkDuplicates Tracking 1013942 as yet unmatched pairs. 35508 records in RAM.
INFO 2026-06-08 09:09:05 MarkDuplicates Read 310,000,000 records. Elapsed time: 00:10:32s. Time for last 1,000,000: 1s. Last read position: chr10:77,842,089
INFO 2026-06-08 09:09:05 MarkDuplicates Tracking 1011418 as yet unmatched pairs. 32964 records in RAM.
INFO 2026-06-08 09:09:07 MarkDuplicates Read 311,000,000 records. Elapsed time: 00:10:34s. Time for last 1,000,000: 1s. Last read position: chr10:87,743,374
INFO 2026-06-08 09:09:07 MarkDuplicates Tracking 1007760 as yet unmatched pairs. 29286 records in RAM.
INFO 2026-06-08 09:09:08 MarkDuplicates Read 312,000,000 records. Elapsed time: 00:10:35s. Time for last 1,000,000: 1s. Last read position: chr10:93,402,279
INFO 2026-06-08 09:09:08 MarkDuplicates Tracking 1006065 as yet unmatched pairs. 27586 records in RAM.
INFO 2026-06-08 09:09:10 MarkDuplicates Read 313,000,000 records. Elapsed time: 00:10:37s. Time for last 1,000,000: 1s. Last read position: chr10:97,460,218
INFO 2026-06-08 09:09:10 MarkDuplicates Tracking 1002207 as yet unmatched pairs. 23713 records in RAM.
INFO 2026-06-08 09:09:12 MarkDuplicates Read 314,000,000 records. Elapsed time: 00:10:38s. Time for last 1,000,000: 1s. Last read position: chr10:102,067,484
INFO 2026-06-08 09:09:12 MarkDuplicates Tracking 998262 as yet unmatched pairs. 19759 records in RAM.
INFO 2026-06-08 09:09:14 MarkDuplicates Read 315,000,000 records. Elapsed time: 00:10:40s. Time for last 1,000,000: 2s. Last read position: chr10:103,612,852
INFO 2026-06-08 09:09:14 MarkDuplicates Tracking 996632 as yet unmatched pairs. 18120 records in RAM.
INFO 2026-06-08 09:09:15 MarkDuplicates Read 316,000,000 records. Elapsed time: 00:10:42s. Time for last 1,000,000: 1s. Last read position: chr10:104,049,414
INFO 2026-06-08 09:09:15 MarkDuplicates Tracking 998557 as yet unmatched pairs. 20032 records in RAM.
INFO 2026-06-08 09:09:17 MarkDuplicates Read 317,000,000 records. Elapsed time: 00:10:44s. Time for last 1,000,000: 1s. Last read position: chr10:110,112,777
INFO 2026-06-08 09:09:17 MarkDuplicates Tracking 988889 as yet unmatched pairs. 10351 records in RAM.
INFO 2026-06-08 09:09:19 MarkDuplicates Read 318,000,000 records. Elapsed time: 00:10:46s. Time for last 1,000,000: 1s. Last read position: chr10:119,073,789
INFO 2026-06-08 09:09:19 MarkDuplicates Tracking 986548 as yet unmatched pairs. 8003 records in RAM.
INFO 2026-06-08 09:09:20 MarkDuplicates Read 319,000,000 records. Elapsed time: 00:10:47s. Time for last 1,000,000: 1s. Last read position: chr10:124,974,202
INFO 2026-06-08 09:09:20 MarkDuplicates Tracking 982476 as yet unmatched pairs. 3910 records in RAM.
INFO 2026-06-08 09:09:22 MarkDuplicates Read 320,000,000 records. Elapsed time: 00:10:49s. Time for last 1,000,000: 1s. Last read position: chr10:133,309,405
INFO 2026-06-08 09:09:22 MarkDuplicates Tracking 979192 as yet unmatched pairs. 588 records in RAM.
INFO 2026-06-08 09:09:25 MarkDuplicates Read 321,000,000 records. Elapsed time: 00:10:52s. Time for last 1,000,000: 2s. Last read position: chr11:320,571
INFO 2026-06-08 09:09:25 MarkDuplicates Tracking 1004497 as yet unmatched pairs. 154834 records in RAM.
INFO 2026-06-08 09:09:26 MarkDuplicates Read 322,000,000 records. Elapsed time: 00:10:53s. Time for last 1,000,000: 1s. Last read position: chr11:770,169
INFO 2026-06-08 09:09:26 MarkDuplicates Tracking 971735 as yet unmatched pairs. 122070 records in RAM.
INFO 2026-06-08 09:09:28 MarkDuplicates Read 323,000,000 records. Elapsed time: 00:10:55s. Time for last 1,000,000: 2s. Last read position: chr11:1,759,605
INFO 2026-06-08 09:09:28 MarkDuplicates Tracking 977568 as yet unmatched pairs. 127879 records in RAM.
INFO 2026-06-08 09:09:30 MarkDuplicates Read 324,000,000 records. Elapsed time: 00:10:57s. Time for last 1,000,000: 1s. Last read position: chr11:6,211,388
INFO 2026-06-08 09:09:30 MarkDuplicates Tracking 964315 as yet unmatched pairs. 114609 records in RAM.
INFO 2026-06-08 09:09:31 MarkDuplicates Read 325,000,000 records. Elapsed time: 00:10:58s. Time for last 1,000,000: 1s. Last read position: chr11:9,204,038
INFO 2026-06-08 09:09:31 MarkDuplicates Tracking 961323 as yet unmatched pairs. 111617 records in RAM.
INFO 2026-06-08 09:09:33 MarkDuplicates Read 326,000,000 records. Elapsed time: 00:11:00s. Time for last 1,000,000: 1s. Last read position: chr11:10,803,210
INFO 2026-06-08 09:09:33 MarkDuplicates Tracking 961354 as yet unmatched pairs. 111639 records in RAM.
INFO 2026-06-08 09:09:35 MarkDuplicates Read 327,000,000 records. Elapsed time: 00:11:02s. Time for last 1,000,000: 1s. Last read position: chr11:16,754,950
INFO 2026-06-08 09:09:35 MarkDuplicates Tracking 955675 as yet unmatched pairs. 105955 records in RAM.
INFO 2026-06-08 09:09:37 MarkDuplicates Read 328,000,000 records. Elapsed time: 00:11:03s. Time for last 1,000,000: 1s. Last read position: chr11:30,439,517
INFO 2026-06-08 09:09:37 MarkDuplicates Tracking 951652 as yet unmatched pairs. 101913 records in RAM.
INFO 2026-06-08 09:09:38 MarkDuplicates Read 329,000,000 records. Elapsed time: 00:11:05s. Time for last 1,000,000: 1s. Last read position: chr11:35,180,298
INFO 2026-06-08 09:09:38 MarkDuplicates Tracking 952917 as yet unmatched pairs. 103177 records in RAM.
INFO 2026-06-08 09:09:40 MarkDuplicates Read 330,000,000 records. Elapsed time: 00:11:07s. Time for last 1,000,000: 1s. Last read position: chr11:45,227,117
INFO 2026-06-08 09:09:40 MarkDuplicates Tracking 945754 as yet unmatched pairs. 96000 records in RAM.
INFO 2026-06-08 09:09:42 MarkDuplicates Read 331,000,000 records. Elapsed time: 00:11:09s. Time for last 1,000,000: 1s. Last read position: chr11:47,424,092
INFO 2026-06-08 09:09:42 MarkDuplicates Tracking 943691 as yet unmatched pairs. 93933 records in RAM.
INFO 2026-06-08 09:09:43 MarkDuplicates Read 332,000,000 records. Elapsed time: 00:11:10s. Time for last 1,000,000: 1s. Last read position: chr11:57,602,034
INFO 2026-06-08 09:09:43 MarkDuplicates Tracking 939849 as yet unmatched pairs. 90078 records in RAM.
INFO 2026-06-08 09:09:45 MarkDuplicates Read 333,000,000 records. Elapsed time: 00:11:12s. Time for last 1,000,000: 1s. Last read position: chr11:60,292,312
INFO 2026-06-08 09:09:45 MarkDuplicates Tracking 937329 as yet unmatched pairs. 87544 records in RAM.
INFO 2026-06-08 09:09:47 MarkDuplicates Read 334,000,000 records. Elapsed time: 00:11:14s. Time for last 1,000,000: 2s. Last read position: chr11:61,790,521
INFO 2026-06-08 09:09:47 MarkDuplicates Tracking 932949 as yet unmatched pairs. 83159 records in RAM.
INFO 2026-06-08 09:09:49 MarkDuplicates Read 335,000,000 records. Elapsed time: 00:11:16s. Time for last 1,000,000: 1s. Last read position: chr11:62,519,512
INFO 2026-06-08 09:09:49 MarkDuplicates Tracking 932401 as yet unmatched pairs. 82592 records in RAM.
INFO 2026-06-08 09:09:50 MarkDuplicates Read 336,000,000 records. Elapsed time: 00:11:17s. Time for last 1,000,000: 1s. Last read position: chr11:62,526,782
INFO 2026-06-08 09:09:50 MarkDuplicates Tracking 931565 as yet unmatched pairs. 81749 records in RAM.
INFO 2026-06-08 09:09:52 MarkDuplicates Read 337,000,000 records. Elapsed time: 00:11:19s. Time for last 1,000,000: 1s. Last read position: chr11:62,533,390
INFO 2026-06-08 09:09:52 MarkDuplicates Tracking 927446 as yet unmatched pairs. 77615 records in RAM.
INFO 2026-06-08 09:09:54 MarkDuplicates Read 338,000,000 records. Elapsed time: 00:11:21s. Time for last 1,000,000: 2s. Last read position: chr11:62,702,491
INFO 2026-06-08 09:09:54 MarkDuplicates Tracking 922142 as yet unmatched pairs. 72308 records in RAM.
INFO 2026-06-08 09:09:56 MarkDuplicates Read 339,000,000 records. Elapsed time: 00:11:23s. Time for last 1,000,000: 1s. Last read position: chr11:64,197,510
INFO 2026-06-08 09:09:56 MarkDuplicates Tracking 918977 as yet unmatched pairs. 69132 records in RAM.
INFO 2026-06-08 09:09:58 MarkDuplicates Read 340,000,000 records. Elapsed time: 00:11:25s. Time for last 1,000,000: 1s. Last read position: chr11:64,765,290
INFO 2026-06-08 09:09:58 MarkDuplicates Tracking 914971 as yet unmatched pairs. 65119 records in RAM.
INFO 2026-06-08 09:09:59 MarkDuplicates Read 341,000,000 records. Elapsed time: 00:11:26s. Time for last 1,000,000: 1s. Last read position: chr11:65,133,513
INFO 2026-06-08 09:09:59 MarkDuplicates Tracking 910777 as yet unmatched pairs. 60917 records in RAM.
INFO 2026-06-08 09:10:01 MarkDuplicates Read 342,000,000 records. Elapsed time: 00:11:28s. Time for last 1,000,000: 1s. Last read position: chr11:65,581,893
INFO 2026-06-08 09:10:01 MarkDuplicates Tracking 907231 as yet unmatched pairs. 57289 records in RAM.
INFO 2026-06-08 09:10:03 MarkDuplicates Read 343,000,000 records. Elapsed time: 00:11:30s. Time for last 1,000,000: 1s. Last read position: chr11:65,855,168
INFO 2026-06-08 09:10:03 MarkDuplicates Tracking 904183 as yet unmatched pairs. 54233 records in RAM.
INFO 2026-06-08 09:10:05 MarkDuplicates Read 344,000,000 records. Elapsed time: 00:11:32s. Time for last 1,000,000: 1s. Last read position: chr11:66,268,682
INFO 2026-06-08 09:10:05 MarkDuplicates Tracking 901049 as yet unmatched pairs. 51071 records in RAM.
INFO 2026-06-08 09:10:07 MarkDuplicates Read 345,000,000 records. Elapsed time: 00:11:34s. Time for last 1,000,000: 1s. Last read position: chr11:67,245,208
INFO 2026-06-08 09:10:07 MarkDuplicates Tracking 896073 as yet unmatched pairs. 46090 records in RAM.
INFO 2026-06-08 09:10:08 MarkDuplicates Read 346,000,000 records. Elapsed time: 00:11:35s. Time for last 1,000,000: 1s. Last read position: chr11:67,586,175
INFO 2026-06-08 09:10:08 MarkDuplicates Tracking 901710 as yet unmatched pairs. 51704 records in RAM.
INFO 2026-06-08 09:10:10 MarkDuplicates Read 347,000,000 records. Elapsed time: 00:11:37s. Time for last 1,000,000: 1s. Last read position: chr11:69,648,002
INFO 2026-06-08 09:10:10 MarkDuplicates Tracking 894416 as yet unmatched pairs. 44401 records in RAM.
INFO 2026-06-08 09:10:12 MarkDuplicates Read 348,000,000 records. Elapsed time: 00:11:39s. Time for last 1,000,000: 1s. Last read position: chr11:72,006,037
INFO 2026-06-08 09:10:12 MarkDuplicates Tracking 886306 as yet unmatched pairs. 36273 records in RAM.
INFO 2026-06-08 09:10:13 MarkDuplicates Read 349,000,000 records. Elapsed time: 00:11:40s. Time for last 1,000,000: 1s. Last read position: chr11:73,363,276
INFO 2026-06-08 09:10:13 MarkDuplicates Tracking 882001 as yet unmatched pairs. 31942 records in RAM.
INFO 2026-06-08 09:10:15 MarkDuplicates Read 350,000,000 records. Elapsed time: 00:11:42s. Time for last 1,000,000: 1s. Last read position: chr11:75,568,731
INFO 2026-06-08 09:10:15 MarkDuplicates Tracking 880753 as yet unmatched pairs. 30674 records in RAM.
INFO 2026-06-08 09:10:17 MarkDuplicates Read 351,000,000 records. Elapsed time: 00:11:44s. Time for last 1,000,000: 1s. Last read position: chr11:82,982,211
INFO 2026-06-08 09:10:17 MarkDuplicates Tracking 875614 as yet unmatched pairs. 25530 records in RAM.
INFO 2026-06-08 09:10:18 MarkDuplicates Read 352,000,000 records. Elapsed time: 00:11:45s. Time for last 1,000,000: 1s. Last read position: chr11:88,337,590
INFO 2026-06-08 09:10:18 MarkDuplicates Tracking 872438 as yet unmatched pairs. 22325 records in RAM.
INFO 2026-06-08 09:10:20 MarkDuplicates Read 353,000,000 records. Elapsed time: 00:11:47s. Time for last 1,000,000: 1s. Last read position: chr11:102,229,709
INFO 2026-06-08 09:10:20 MarkDuplicates Tracking 872759 as yet unmatched pairs. 22625 records in RAM.
INFO 2026-06-08 09:10:22 MarkDuplicates Read 354,000,000 records. Elapsed time: 00:11:49s. Time for last 1,000,000: 1s. Last read position: chr11:108,289,791
INFO 2026-06-08 09:10:22 MarkDuplicates Tracking 866772 as yet unmatched pairs. 16630 records in RAM.
INFO 2026-06-08 09:10:23 MarkDuplicates Read 355,000,000 records. Elapsed time: 00:11:50s. Time for last 1,000,000: 1s. Last read position: chr11:117,904,018
INFO 2026-06-08 09:10:23 MarkDuplicates Tracking 863482 as yet unmatched pairs. 13329 records in RAM.
INFO 2026-06-08 09:10:25 MarkDuplicates Read 356,000,000 records. Elapsed time: 00:11:52s. Time for last 1,000,000: 1s. Last read position: chr11:119,028,301
INFO 2026-06-08 09:10:25 MarkDuplicates Tracking 860534 as yet unmatched pairs. 10372 records in RAM.
INFO 2026-06-08 09:10:27 MarkDuplicates Read 357,000,000 records. Elapsed time: 00:11:54s. Time for last 1,000,000: 1s. Last read position: chr11:120,460,680
INFO 2026-06-08 09:10:27 MarkDuplicates Tracking 857927 as yet unmatched pairs. 7755 records in RAM.
INFO 2026-06-08 09:10:28 MarkDuplicates Read 358,000,000 records. Elapsed time: 00:11:55s. Time for last 1,000,000: 1s. Last read position: chr11:125,618,493
INFO 2026-06-08 09:10:28 MarkDuplicates Tracking 855705 as yet unmatched pairs. 5521 records in RAM.
INFO 2026-06-08 09:10:30 MarkDuplicates Read 359,000,000 records. Elapsed time: 00:11:57s. Time for last 1,000,000: 1s. Last read position: chr11:130,449,403
INFO 2026-06-08 09:10:30 MarkDuplicates Tracking 850925 as yet unmatched pairs. 730 records in RAM.
INFO 2026-06-08 09:10:32 MarkDuplicates Read 360,000,000 records. Elapsed time: 00:11:59s. Time for last 1,000,000: 2s. Last read position: chr12:2,859,014
INFO 2026-06-08 09:10:32 MarkDuplicates Tracking 847988 as yet unmatched pairs. 104838 records in RAM.
INFO 2026-06-08 09:10:34 MarkDuplicates Read 361,000,000 records. Elapsed time: 00:12:01s. Time for last 1,000,000: 1s. Last read position: chr12:6,386,079
INFO 2026-06-08 09:10:34 MarkDuplicates Tracking 846363 as yet unmatched pairs. 103193 records in RAM.
INFO 2026-06-08 09:10:36 MarkDuplicates Read 362,000,000 records. Elapsed time: 00:12:03s. Time for last 1,000,000: 1s. Last read position: chr12:6,770,411
INFO 2026-06-08 09:10:36 MarkDuplicates Tracking 844446 as yet unmatched pairs. 101275 records in RAM.
INFO 2026-06-08 09:10:38 MarkDuplicates Read 363,000,000 records. Elapsed time: 00:12:05s. Time for last 1,000,000: 1s. Last read position: chr12:7,082,073
INFO 2026-06-08 09:10:38 MarkDuplicates Tracking 838850 as yet unmatched pairs. 95673 records in RAM.
INFO 2026-06-08 09:10:39 MarkDuplicates Read 364,000,000 records. Elapsed time: 00:12:06s. Time for last 1,000,000: 1s. Last read position: chr12:7,932,989
INFO 2026-06-08 09:10:39 MarkDuplicates Tracking 838085 as yet unmatched pairs. 94900 records in RAM.
INFO 2026-06-08 09:10:41 MarkDuplicates Read 365,000,000 records. Elapsed time: 00:12:08s. Time for last 1,000,000: 2s. Last read position: chr12:12,244,410
INFO 2026-06-08 09:10:41 MarkDuplicates Tracking 832508 as yet unmatched pairs. 89288 records in RAM.
INFO 2026-06-08 09:10:43 MarkDuplicates Read 366,000,000 records. Elapsed time: 00:12:10s. Time for last 1,000,000: 1s. Last read position: chr12:26,122,440
INFO 2026-06-08 09:10:43 MarkDuplicates Tracking 829265 as yet unmatched pairs. 86035 records in RAM.
INFO 2026-06-08 09:10:45 MarkDuplicates Read 367,000,000 records. Elapsed time: 00:12:12s. Time for last 1,000,000: 1s. Last read position: chr12:40,225,150
INFO 2026-06-08 09:10:45 MarkDuplicates Tracking 826232 as yet unmatched pairs. 82998 records in RAM.
INFO 2026-06-08 09:10:47 MarkDuplicates Read 368,000,000 records. Elapsed time: 00:12:14s. Time for last 1,000,000: 2s. Last read position: chr12:47,773,267
INFO 2026-06-08 09:10:47 MarkDuplicates Tracking 823640 as yet unmatched pairs. 80396 records in RAM.
INFO 2026-06-08 09:10:49 MarkDuplicates Read 369,000,000 records. Elapsed time: 00:12:16s. Time for last 1,000,000: 2s. Last read position: chr12:49,128,178
INFO 2026-06-08 09:10:49 MarkDuplicates Tracking 833724 as yet unmatched pairs. 90470 records in RAM.
INFO 2026-06-08 09:10:51 MarkDuplicates Read 370,000,000 records. Elapsed time: 00:12:18s. Time for last 1,000,000: 1s. Last read position: chr12:49,272,747
INFO 2026-06-08 09:10:51 MarkDuplicates Tracking 823535 as yet unmatched pairs. 80280 records in RAM.
INFO 2026-06-08 09:10:52 MarkDuplicates Read 371,000,000 records. Elapsed time: 00:12:19s. Time for last 1,000,000: 1s. Last read position: chr12:50,925,402
INFO 2026-06-08 09:10:52 MarkDuplicates Tracking 815149 as yet unmatched pairs. 71886 records in RAM.
INFO 2026-06-08 09:10:54 MarkDuplicates Read 372,000,000 records. Elapsed time: 00:12:21s. Time for last 1,000,000: 1s. Last read position: chr12:52,473,486
INFO 2026-06-08 09:10:54 MarkDuplicates Tracking 815363 as yet unmatched pairs. 72099 records in RAM.
INFO 2026-06-08 09:10:55 MarkDuplicates Read 373,000,000 records. Elapsed time: 00:12:22s. Time for last 1,000,000: 1s. Last read position: chr12:52,491,634
INFO 2026-06-08 09:10:55 MarkDuplicates Tracking 821733 as yet unmatched pairs. 78463 records in RAM.
INFO 2026-06-08 09:10:57 MarkDuplicates Read 374,000,000 records. Elapsed time: 00:12:24s. Time for last 1,000,000: 1s. Last read position: chr12:52,515,216
INFO 2026-06-08 09:10:57 MarkDuplicates Tracking 827111 as yet unmatched pairs. 83830 records in RAM.
INFO 2026-06-08 09:10:59 MarkDuplicates Read 375,000,000 records. Elapsed time: 00:12:26s. Time for last 1,000,000: 1s. Last read position: chr12:52,520,034
INFO 2026-06-08 09:10:59 MarkDuplicates Tracking 820893 as yet unmatched pairs. 77610 records in RAM.
INFO 2026-06-08 09:11:00 MarkDuplicates Read 376,000,000 records. Elapsed time: 00:12:27s. Time for last 1,000,000: 1s. Last read position: chr12:53,461,054
INFO 2026-06-08 09:11:00 MarkDuplicates Tracking 805903 as yet unmatched pairs. 62610 records in RAM.
INFO 2026-06-08 09:11:02 MarkDuplicates Read 377,000,000 records. Elapsed time: 00:12:29s. Time for last 1,000,000: 1s. Last read position: chr12:54,401,790
INFO 2026-06-08 09:11:02 MarkDuplicates Tracking 805753 as yet unmatched pairs. 62460 records in RAM.
INFO 2026-06-08 09:11:04 MarkDuplicates Read 378,000,000 records. Elapsed time: 00:12:31s. Time for last 1,000,000: 1s. Last read position: chr12:55,941,273
INFO 2026-06-08 09:11:04 MarkDuplicates Tracking 795310 as yet unmatched pairs. 52006 records in RAM.
INFO 2026-06-08 09:11:06 MarkDuplicates Read 379,000,000 records. Elapsed time: 00:12:33s. Time for last 1,000,000: 1s. Last read position: chr12:56,349,460
INFO 2026-06-08 09:11:06 MarkDuplicates Tracking 791830 as yet unmatched pairs. 48521 records in RAM.
INFO 2026-06-08 09:11:07 MarkDuplicates Read 380,000,000 records. Elapsed time: 00:12:34s. Time for last 1,000,000: 1s. Last read position: chr12:57,098,838
INFO 2026-06-08 09:11:07 MarkDuplicates Tracking 790293 as yet unmatched pairs. 46980 records in RAM.
INFO 2026-06-08 09:11:09 MarkDuplicates Read 381,000,000 records. Elapsed time: 00:12:36s. Time for last 1,000,000: 1s. Last read position: chr12:57,194,396
INFO 2026-06-08 09:11:09 MarkDuplicates Tracking 786124 as yet unmatched pairs. 42809 records in RAM.
INFO 2026-06-08 09:11:11 MarkDuplicates Read 382,000,000 records. Elapsed time: 00:12:38s. Time for last 1,000,000: 2s. Last read position: chr12:57,718,325
INFO 2026-06-08 09:11:11 MarkDuplicates Tracking 783561 as yet unmatched pairs. 40240 records in RAM.
INFO 2026-06-08 09:11:14 MarkDuplicates Read 383,000,000 records. Elapsed time: 00:12:41s. Time for last 1,000,000: 2s. Last read position: chr12:66,322,766
INFO 2026-06-08 09:11:14 MarkDuplicates Tracking 779113 as yet unmatched pairs. 35762 records in RAM.
INFO 2026-06-08 09:11:16 MarkDuplicates Read 384,000,000 records. Elapsed time: 00:12:43s. Time for last 1,000,000: 2s. Last read position: chr12:76,053,889
INFO 2026-06-08 09:11:16 MarkDuplicates Tracking 780002 as yet unmatched pairs. 36635 records in RAM.
INFO 2026-06-08 09:11:18 MarkDuplicates Read 385,000,000 records. Elapsed time: 00:12:44s. Time for last 1,000,000: 1s. Last read position: chr12:93,479,421
INFO 2026-06-08 09:11:18 MarkDuplicates Tracking 773753 as yet unmatched pairs. 30373 records in RAM.
INFO 2026-06-08 09:11:19 MarkDuplicates Read 386,000,000 records. Elapsed time: 00:12:46s. Time for last 1,000,000: 1s. Last read position: chr12:101,770,061
INFO 2026-06-08 09:11:19 MarkDuplicates Tracking 770946 as yet unmatched pairs. 27561 records in RAM.
INFO 2026-06-08 09:11:21 MarkDuplicates Read 387,000,000 records. Elapsed time: 00:12:48s. Time for last 1,000,000: 1s. Last read position: chr12:105,174,408
INFO 2026-06-08 09:11:21 MarkDuplicates Tracking 768185 as yet unmatched pairs. 24787 records in RAM.
INFO 2026-06-08 09:11:22 MarkDuplicates Read 388,000,000 records. Elapsed time: 00:12:49s. Time for last 1,000,000: 1s. Last read position: chr12:110,281,759
INFO 2026-06-08 09:11:22 MarkDuplicates Tracking 764899 as yet unmatched pairs. 21470 records in RAM.
INFO 2026-06-08 09:11:24 MarkDuplicates Read 389,000,000 records. Elapsed time: 00:12:51s. Time for last 1,000,000: 1s. Last read position: chr12:112,405,309
INFO 2026-06-08 09:11:24 MarkDuplicates Tracking 763459 as yet unmatched pairs. 20023 records in RAM.
INFO 2026-06-08 09:11:26 MarkDuplicates Read 390,000,000 records. Elapsed time: 00:12:53s. Time for last 1,000,000: 1s. Last read position: chr12:118,189,828
INFO 2026-06-08 09:11:26 MarkDuplicates Tracking 758405 as yet unmatched pairs. 14963 records in RAM.
INFO 2026-06-08 09:11:27 MarkDuplicates Read 391,000,000 records. Elapsed time: 00:12:54s. Time for last 1,000,000: 1s. Last read position: chr12:120,710,699
INFO 2026-06-08 09:11:27 MarkDuplicates Tracking 754760 as yet unmatched pairs. 11299 records in RAM.
INFO 2026-06-08 09:11:29 MarkDuplicates Read 392,000,000 records. Elapsed time: 00:12:56s. Time for last 1,000,000: 1s. Last read position: chr12:123,253,850
INFO 2026-06-08 09:11:29 MarkDuplicates Tracking 751628 as yet unmatched pairs. 8155 records in RAM.
INFO 2026-06-08 09:11:31 MarkDuplicates Read 393,000,000 records. Elapsed time: 00:12:58s. Time for last 1,000,000: 1s. Last read position: chr12:124,912,804
INFO 2026-06-08 09:11:31 MarkDuplicates Tracking 749090 as yet unmatched pairs. 5593 records in RAM.
INFO 2026-06-08 09:11:33 MarkDuplicates Read 394,000,000 records. Elapsed time: 00:12:59s. Time for last 1,000,000: 1s. Last read position: chr12:132,730,089
INFO 2026-06-08 09:11:33 MarkDuplicates Tracking 746017 as yet unmatched pairs. 2519 records in RAM.
INFO 2026-06-08 09:11:34 MarkDuplicates Read 395,000,000 records. Elapsed time: 00:13:01s. Time for last 1,000,000: 1s. Last read position: chr13:20,189,168
INFO 2026-06-08 09:11:34 MarkDuplicates Tracking 744862 as yet unmatched pairs. 29574 records in RAM.
INFO 2026-06-08 09:11:36 MarkDuplicates Read 396,000,000 records. Elapsed time: 00:13:03s. Time for last 1,000,000: 1s. Last read position: chr13:30,764,156
INFO 2026-06-08 09:11:36 MarkDuplicates Tracking 738954 as yet unmatched pairs. 23641 records in RAM.
INFO 2026-06-08 09:11:37 MarkDuplicates Read 397,000,000 records. Elapsed time: 00:13:04s. Time for last 1,000,000: 1s. Last read position: chr13:40,560,682
INFO 2026-06-08 09:11:37 MarkDuplicates Tracking 736867 as yet unmatched pairs. 21552 records in RAM.
INFO 2026-06-08 09:11:39 MarkDuplicates Read 398,000,000 records. Elapsed time: 00:13:06s. Time for last 1,000,000: 1s. Last read position: chr13:49,488,600
INFO 2026-06-08 09:11:39 MarkDuplicates Tracking 732847 as yet unmatched pairs. 17529 records in RAM.
INFO 2026-06-08 09:11:41 MarkDuplicates Read 399,000,000 records. Elapsed time: 00:13:08s. Time for last 1,000,000: 1s. Last read position: chr13:79,551,107
INFO 2026-06-08 09:11:41 MarkDuplicates Tracking 730203 as yet unmatched pairs. 14865 records in RAM.
INFO 2026-06-08 09:11:43 MarkDuplicates Read 400,000,000 records. Elapsed time: 00:13:10s. Time for last 1,000,000: 1s. Last read position: chr13:102,643,284
INFO 2026-06-08 09:11:43 MarkDuplicates Tracking 727122 as yet unmatched pairs. 11766 records in RAM.
INFO 2026-06-08 09:11:45 MarkDuplicates Read 401,000,000 records. Elapsed time: 00:13:12s. Time for last 1,000,000: 2s. Last read position: chr13:110,205,352
INFO 2026-06-08 09:11:45 MarkDuplicates Tracking 726093 as yet unmatched pairs. 10734 records in RAM.
INFO 2026-06-08 09:11:47 MarkDuplicates Read 402,000,000 records. Elapsed time: 00:13:14s. Time for last 1,000,000: 2s. Last read position: chr13:110,495,336
INFO 2026-06-08 09:11:47 MarkDuplicates Tracking 721858 as yet unmatched pairs. 6495 records in RAM.
INFO 2026-06-08 09:11:50 MarkDuplicates Read 403,000,000 records. Elapsed time: 00:13:16s. Time for last 1,000,000: 2s. Last read position: chr13:113,832,659
INFO 2026-06-08 09:11:50 MarkDuplicates Tracking 717951 as yet unmatched pairs. 2571 records in RAM.
INFO 2026-06-08 09:11:52 MarkDuplicates Read 404,000,000 records. Elapsed time: 00:13:19s. Time for last 1,000,000: 2s. Last read position: chr14:21,500,962
INFO 2026-06-08 09:11:52 MarkDuplicates Tracking 712852 as yet unmatched pairs. 60544 records in RAM.
INFO 2026-06-08 09:11:53 MarkDuplicates Read 405,000,000 records. Elapsed time: 00:13:20s. Time for last 1,000,000: 1s. Last read position: chr14:23,062,418
INFO 2026-06-08 09:11:53 MarkDuplicates Tracking 709393 as yet unmatched pairs. 57074 records in RAM.
INFO 2026-06-08 09:11:55 MarkDuplicates Read 406,000,000 records. Elapsed time: 00:13:22s. Time for last 1,000,000: 1s. Last read position: chr14:24,304,248
INFO 2026-06-08 09:11:55 MarkDuplicates Tracking 706157 as yet unmatched pairs. 53826 records in RAM.
INFO 2026-06-08 09:11:57 MarkDuplicates Read 407,000,000 records. Elapsed time: 00:13:24s. Time for last 1,000,000: 1s. Last read position: chr14:35,270,463
INFO 2026-06-08 09:11:57 MarkDuplicates Tracking 702958 as yet unmatched pairs. 50622 records in RAM.
INFO 2026-06-08 09:11:58 MarkDuplicates Read 408,000,000 records. Elapsed time: 00:13:25s. Time for last 1,000,000: 1s. Last read position: chr14:49,894,147
INFO 2026-06-08 09:11:58 MarkDuplicates Tracking 703244 as yet unmatched pairs. 50850 records in RAM.
INFO 2026-06-08 09:12:00 MarkDuplicates Read 409,000,000 records. Elapsed time: 00:13:27s. Time for last 1,000,000: 1s. Last read position: chr14:54,737,041
INFO 2026-06-08 09:12:00 MarkDuplicates Tracking 697285 as yet unmatched pairs. 44874 records in RAM.
INFO 2026-06-08 09:12:02 MarkDuplicates Read 410,000,000 records. Elapsed time: 00:13:28s. Time for last 1,000,000: 1s. Last read position: chr14:60,734,936
INFO 2026-06-08 09:12:02 MarkDuplicates Tracking 694490 as yet unmatched pairs. 42079 records in RAM.
INFO 2026-06-08 09:12:03 MarkDuplicates Read 411,000,000 records. Elapsed time: 00:13:30s. Time for last 1,000,000: 1s. Last read position: chr14:64,704,660
INFO 2026-06-08 09:12:03 MarkDuplicates Tracking 691670 as yet unmatched pairs. 39253 records in RAM.
INFO 2026-06-08 09:12:05 MarkDuplicates Read 412,000,000 records. Elapsed time: 00:13:32s. Time for last 1,000,000: 1s. Last read position: chr14:68,892,122
INFO 2026-06-08 09:12:05 MarkDuplicates Tracking 690736 as yet unmatched pairs. 38301 records in RAM.
INFO 2026-06-08 09:12:06 MarkDuplicates Read 413,000,000 records. Elapsed time: 00:13:33s. Time for last 1,000,000: 1s. Last read position: chr14:73,287,153
INFO 2026-06-08 09:12:06 MarkDuplicates Tracking 685188 as yet unmatched pairs. 32740 records in RAM.
INFO 2026-06-08 09:12:08 MarkDuplicates Read 414,000,000 records. Elapsed time: 00:13:35s. Time for last 1,000,000: 1s. Last read position: chr14:75,279,929
INFO 2026-06-08 09:12:08 MarkDuplicates Tracking 688097 as yet unmatched pairs. 35635 records in RAM.
INFO 2026-06-08 09:12:10 MarkDuplicates Read 415,000,000 records. Elapsed time: 00:13:37s. Time for last 1,000,000: 1s. Last read position: chr14:90,263,693
INFO 2026-06-08 09:12:10 MarkDuplicates Tracking 679039 as yet unmatched pairs. 26573 records in RAM.
INFO 2026-06-08 09:12:12 MarkDuplicates Read 416,000,000 records. Elapsed time: 00:13:39s. Time for last 1,000,000: 2s. Last read position: chr14:94,115,903
INFO 2026-06-08 09:12:12 MarkDuplicates Tracking 684603 as yet unmatched pairs. 32130 records in RAM.
INFO 2026-06-08 09:12:13 MarkDuplicates Read 417,000,000 records. Elapsed time: 00:13:40s. Time for last 1,000,000: 1s. Last read position: chr14:101,986,646
INFO 2026-06-08 09:12:13 MarkDuplicates Tracking 672619 as yet unmatched pairs. 20132 records in RAM.
INFO 2026-06-08 09:12:15 MarkDuplicates Read 418,000,000 records. Elapsed time: 00:13:42s. Time for last 1,000,000: 1s. Last read position: chr14:102,967,047
INFO 2026-06-08 09:12:15 MarkDuplicates Tracking 669183 as yet unmatched pairs. 16678 records in RAM.
INFO 2026-06-08 09:12:16 MarkDuplicates Read 419,000,000 records. Elapsed time: 00:13:43s. Time for last 1,000,000: 1s. Last read position: chr14:104,887,619
INFO 2026-06-08 09:12:16 MarkDuplicates Tracking 666015 as yet unmatched pairs. 13502 records in RAM.
INFO 2026-06-08 09:12:18 MarkDuplicates Read 420,000,000 records. Elapsed time: 00:13:45s. Time for last 1,000,000: 2s. Last read position: chr14:104,944,753
INFO 2026-06-08 09:12:18 MarkDuplicates Tracking 671060 as yet unmatched pairs. 18542 records in RAM.
INFO 2026-06-08 09:12:20 MarkDuplicates Read 421,000,000 records. Elapsed time: 00:13:47s. Time for last 1,000,000: 1s. Last read position: chr14:104,949,790
INFO 2026-06-08 09:12:20 MarkDuplicates Tracking 671137 as yet unmatched pairs. 18602 records in RAM.
INFO 2026-06-08 09:12:22 MarkDuplicates Read 422,000,000 records. Elapsed time: 00:13:49s. Time for last 1,000,000: 1s. Last read position: chr14:105,168,084
INFO 2026-06-08 09:12:22 MarkDuplicates Tracking 656095 as yet unmatched pairs. 3558 records in RAM.
INFO 2026-06-08 09:12:24 MarkDuplicates Read 423,000,000 records. Elapsed time: 00:13:51s. Time for last 1,000,000: 2s. Last read position: chr14:105,742,038
INFO 2026-06-08 09:12:24 MarkDuplicates Tracking 656115 as yet unmatched pairs. 3576 records in RAM.
INFO 2026-06-08 09:12:26 MarkDuplicates Read 424,000,000 records. Elapsed time: 00:13:53s. Time for last 1,000,000: 2s. Last read position: chr15:32,731,874
INFO 2026-06-08 09:12:26 MarkDuplicates Tracking 650713 as yet unmatched pairs. 37772 records in RAM.
INFO 2026-06-08 09:12:28 MarkDuplicates Read 425,000,000 records. Elapsed time: 00:13:55s. Time for last 1,000,000: 1s. Last read position: chr15:39,589,019
INFO 2026-06-08 09:12:28 MarkDuplicates Tracking 657582 as yet unmatched pairs. 44625 records in RAM.
INFO 2026-06-08 09:12:30 MarkDuplicates Read 426,000,000 records. Elapsed time: 00:13:57s. Time for last 1,000,000: 1s. Last read position: chr15:40,855,915
INFO 2026-06-08 09:12:30 MarkDuplicates Tracking 644936 as yet unmatched pairs. 31968 records in RAM.
INFO 2026-06-08 09:12:31 MarkDuplicates Read 427,000,000 records. Elapsed time: 00:13:58s. Time for last 1,000,000: 1s. Last read position: chr15:43,766,858
INFO 2026-06-08 09:12:31 MarkDuplicates Tracking 646525 as yet unmatched pairs. 33549 records in RAM.
INFO 2026-06-08 09:12:33 MarkDuplicates Read 428,000,000 records. Elapsed time: 00:14:00s. Time for last 1,000,000: 1s. Last read position: chr15:48,613,053
INFO 2026-06-08 09:12:33 MarkDuplicates Tracking 639034 as yet unmatched pairs. 26058 records in RAM.
INFO 2026-06-08 09:12:35 MarkDuplicates Read 429,000,000 records. Elapsed time: 00:14:02s. Time for last 1,000,000: 1s. Last read position: chr15:58,621,511
INFO 2026-06-08 09:12:35 MarkDuplicates Tracking 636407 as yet unmatched pairs. 23427 records in RAM.
INFO 2026-06-08 09:12:37 MarkDuplicates Read 430,000,000 records. Elapsed time: 00:14:03s. Time for last 1,000,000: 1s. Last read position: chr15:64,112,658
INFO 2026-06-08 09:12:37 MarkDuplicates Tracking 633057 as yet unmatched pairs. 20067 records in RAM.
INFO 2026-06-08 09:12:38 MarkDuplicates Read 431,000,000 records. Elapsed time: 00:14:05s. Time for last 1,000,000: 1s. Last read position: chr15:70,657,106
INFO 2026-06-08 09:12:38 MarkDuplicates Tracking 629464 as yet unmatched pairs. 16470 records in RAM.
INFO 2026-06-08 09:12:40 MarkDuplicates Read 432,000,000 records. Elapsed time: 00:14:07s. Time for last 1,000,000: 1s. Last read position: chr15:74,033,323
INFO 2026-06-08 09:12:40 MarkDuplicates Tracking 628514 as yet unmatched pairs. 15501 records in RAM.
INFO 2026-06-08 09:12:41 MarkDuplicates Read 433,000,000 records. Elapsed time: 00:14:08s. Time for last 1,000,000: 1s. Last read position: chr15:76,774,910
INFO 2026-06-08 09:12:41 MarkDuplicates Tracking 622263 as yet unmatched pairs. 9249 records in RAM.
INFO 2026-06-08 09:12:43 MarkDuplicates Read 434,000,000 records. Elapsed time: 00:14:10s. Time for last 1,000,000: 1s. Last read position: chr15:85,067,143
INFO 2026-06-08 09:12:43 MarkDuplicates Tracking 619179 as yet unmatched pairs. 6157 records in RAM.
INFO 2026-06-08 09:12:45 MarkDuplicates Read 435,000,000 records. Elapsed time: 00:14:12s. Time for last 1,000,000: 1s. Last read position: chr15:90,473,906
INFO 2026-06-08 09:12:45 MarkDuplicates Tracking 616716 as yet unmatched pairs. 3688 records in RAM.
INFO 2026-06-08 09:12:47 MarkDuplicates Read 436,000,000 records. Elapsed time: 00:14:14s. Time for last 1,000,000: 2s. Last read position: chr16:61,391
INFO 2026-06-08 09:12:47 MarkDuplicates Tracking 613180 as yet unmatched pairs. 83974 records in RAM.
INFO 2026-06-08 09:12:49 MarkDuplicates Read 437,000,000 records. Elapsed time: 00:14:16s. Time for last 1,000,000: 1s. Last read position: chr16:795,743
INFO 2026-06-08 09:12:49 MarkDuplicates Tracking 608950 as yet unmatched pairs. 79732 records in RAM.
INFO 2026-06-08 09:12:51 MarkDuplicates Read 438,000,000 records. Elapsed time: 00:14:18s. Time for last 1,000,000: 2s. Last read position: chr16:2,046,217
INFO 2026-06-08 09:12:51 MarkDuplicates Tracking 604316 as yet unmatched pairs. 75094 records in RAM.
INFO 2026-06-08 09:12:54 MarkDuplicates Read 439,000,000 records. Elapsed time: 00:14:21s. Time for last 1,000,000: 2s. Last read position: chr16:2,762,095
INFO 2026-06-08 09:12:54 MarkDuplicates Tracking 600765 as yet unmatched pairs. 71543 records in RAM.
INFO 2026-06-08 09:12:55 MarkDuplicates Read 440,000,000 records. Elapsed time: 00:14:22s. Time for last 1,000,000: 1s. Last read position: chr16:3,290,068
INFO 2026-06-08 09:12:55 MarkDuplicates Tracking 597238 as yet unmatched pairs. 68008 records in RAM.
INFO 2026-06-08 09:12:57 MarkDuplicates Read 441,000,000 records. Elapsed time: 00:14:24s. Time for last 1,000,000: 1s. Last read position: chr16:9,092,040
INFO 2026-06-08 09:12:57 MarkDuplicates Tracking 594653 as yet unmatched pairs. 65418 records in RAM.
INFO 2026-06-08 09:12:59 MarkDuplicates Read 442,000,000 records. Elapsed time: 00:14:26s. Time for last 1,000,000: 1s. Last read position: chr16:14,882,596
INFO 2026-06-08 09:12:59 MarkDuplicates Tracking 591782 as yet unmatched pairs. 62545 records in RAM.
INFO 2026-06-08 09:13:00 MarkDuplicates Read 443,000,000 records. Elapsed time: 00:14:27s. Time for last 1,000,000: 1s. Last read position: chr16:16,283,049
INFO 2026-06-08 09:13:00 MarkDuplicates Tracking 588525 as yet unmatched pairs. 59288 records in RAM.
INFO 2026-06-08 09:13:01 MarkDuplicates Read 444,000,000 records. Elapsed time: 00:14:28s. Time for last 1,000,000: 1s. Last read position: chr16:18,515,889
INFO 2026-06-08 09:13:01 MarkDuplicates Tracking 587650 as yet unmatched pairs. 58405 records in RAM.
INFO 2026-06-08 09:13:03 MarkDuplicates Read 445,000,000 records. Elapsed time: 00:14:30s. Time for last 1,000,000: 1s. Last read position: chr16:21,452,750
INFO 2026-06-08 09:13:03 MarkDuplicates Tracking 585639 as yet unmatched pairs. 56391 records in RAM.
INFO 2026-06-08 09:13:04 MarkDuplicates Read 446,000,000 records. Elapsed time: 00:14:31s. Time for last 1,000,000: 1s. Last read position: chr16:22,535,195
INFO 2026-06-08 09:13:04 MarkDuplicates Tracking 583732 as yet unmatched pairs. 54483 records in RAM.
INFO 2026-06-08 09:13:06 MarkDuplicates Read 447,000,000 records. Elapsed time: 00:14:33s. Time for last 1,000,000: 1s. Last read position: chr16:28,484,040
INFO 2026-06-08 09:13:06 MarkDuplicates Tracking 580918 as yet unmatched pairs. 51669 records in RAM.
INFO 2026-06-08 09:13:07 MarkDuplicates Read 448,000,000 records. Elapsed time: 00:14:34s. Time for last 1,000,000: 1s. Last read position: chr16:29,799,147
INFO 2026-06-08 09:13:07 MarkDuplicates Tracking 578733 as yet unmatched pairs. 49484 records in RAM.
INFO 2026-06-08 09:13:09 MarkDuplicates Read 449,000,000 records. Elapsed time: 00:14:36s. Time for last 1,000,000: 1s. Last read position: chr16:30,070,300
INFO 2026-06-08 09:13:09 MarkDuplicates Tracking 574760 as yet unmatched pairs. 45500 records in RAM.
INFO 2026-06-08 09:13:10 MarkDuplicates Read 450,000,000 records. Elapsed time: 00:14:37s. Time for last 1,000,000: 1s. Last read position: chr16:30,738,612
INFO 2026-06-08 09:13:10 MarkDuplicates Tracking 572514 as yet unmatched pairs. 43253 records in RAM.
INFO 2026-06-08 09:13:12 MarkDuplicates Read 451,000,000 records. Elapsed time: 00:14:39s. Time for last 1,000,000: 1s. Last read position: chr16:31,278,025
INFO 2026-06-08 09:13:12 MarkDuplicates Tracking 569079 as yet unmatched pairs. 39809 records in RAM.
INFO 2026-06-08 09:13:14 MarkDuplicates Read 452,000,000 records. Elapsed time: 00:14:41s. Time for last 1,000,000: 1s. Last read position: chr16:50,796,323
INFO 2026-06-08 09:13:14 MarkDuplicates Tracking 566373 as yet unmatched pairs. 37093 records in RAM.
INFO 2026-06-08 09:13:16 MarkDuplicates Read 453,000,000 records. Elapsed time: 00:14:43s. Time for last 1,000,000: 2s. Last read position: chr16:56,608,637
INFO 2026-06-08 09:13:16 MarkDuplicates Tracking 614879 as yet unmatched pairs. 85598 records in RAM.
INFO 2026-06-08 09:13:19 MarkDuplicates Read 454,000,000 records. Elapsed time: 00:14:46s. Time for last 1,000,000: 2s. Last read position: chr16:57,382,624
INFO 2026-06-08 09:13:19 MarkDuplicates Tracking 559200 as yet unmatched pairs. 29911 records in RAM.
INFO 2026-06-08 09:13:21 MarkDuplicates Read 455,000,000 records. Elapsed time: 00:14:48s. Time for last 1,000,000: 2s. Last read position: chr16:66,923,673
INFO 2026-06-08 09:13:21 MarkDuplicates Tracking 555415 as yet unmatched pairs. 26114 records in RAM.
INFO 2026-06-08 09:13:22 MarkDuplicates Read 456,000,000 records. Elapsed time: 00:14:49s. Time for last 1,000,000: 1s. Last read position: chr16:68,126,472
INFO 2026-06-08 09:13:22 MarkDuplicates Tracking 551339 as yet unmatched pairs. 22035 records in RAM.
INFO 2026-06-08 09:13:24 MarkDuplicates Read 457,000,000 records. Elapsed time: 00:14:51s. Time for last 1,000,000: 1s. Last read position: chr16:69,372,281
INFO 2026-06-08 09:13:24 MarkDuplicates Tracking 548334 as yet unmatched pairs. 19014 records in RAM.
INFO 2026-06-08 09:13:26 MarkDuplicates Read 458,000,000 records. Elapsed time: 00:14:52s. Time for last 1,000,000: 1s. Last read position: chr16:72,795,453
INFO 2026-06-08 09:13:26 MarkDuplicates Tracking 545375 as yet unmatched pairs. 16050 records in RAM.
INFO 2026-06-08 09:13:27 MarkDuplicates Read 459,000,000 records. Elapsed time: 00:14:54s. Time for last 1,000,000: 1s. Last read position: chr16:81,084,561
INFO 2026-06-08 09:13:27 MarkDuplicates Tracking 541980 as yet unmatched pairs. 12654 records in RAM.
INFO 2026-06-08 09:13:29 MarkDuplicates Read 460,000,000 records. Elapsed time: 00:14:56s. Time for last 1,000,000: 1s. Last read position: chr16:87,413,053
INFO 2026-06-08 09:13:29 MarkDuplicates Tracking 538638 as yet unmatched pairs. 9297 records in RAM.
INFO 2026-06-08 09:13:30 MarkDuplicates Read 461,000,000 records. Elapsed time: 00:14:57s. Time for last 1,000,000: 1s. Last read position: chr16:88,721,808
INFO 2026-06-08 09:13:30 MarkDuplicates Tracking 535668 as yet unmatched pairs. 6322 records in RAM.
INFO 2026-06-08 09:13:32 MarkDuplicates Read 462,000,000 records. Elapsed time: 00:14:59s. Time for last 1,000,000: 1s. Last read position: chr16:89,746,679
INFO 2026-06-08 09:13:32 MarkDuplicates Tracking 531009 as yet unmatched pairs. 1657 records in RAM.
INFO 2026-06-08 09:13:35 MarkDuplicates Read 463,000,000 records. Elapsed time: 00:15:02s. Time for last 1,000,000: 3s. Last read position: chr17:1,483,608
INFO 2026-06-08 09:13:35 MarkDuplicates Tracking 527692 as yet unmatched pairs. 200137 records in RAM.
INFO 2026-06-08 09:13:37 MarkDuplicates Read 464,000,000 records. Elapsed time: 00:15:04s. Time for last 1,000,000: 1s. Last read position: chr17:4,170,715
INFO 2026-06-08 09:13:37 MarkDuplicates Tracking 523972 as yet unmatched pairs. 196412 records in RAM.
INFO 2026-06-08 09:13:39 MarkDuplicates Read 465,000,000 records. Elapsed time: 00:15:06s. Time for last 1,000,000: 1s. Last read position: chr17:7,012,700
INFO 2026-06-08 09:13:39 MarkDuplicates Tracking 523276 as yet unmatched pairs. 195711 records in RAM.
INFO 2026-06-08 09:13:41 MarkDuplicates Read 466,000,000 records. Elapsed time: 00:15:08s. Time for last 1,000,000: 2s. Last read position: chr17:7,513,726
INFO 2026-06-08 09:13:41 MarkDuplicates Tracking 517998 as yet unmatched pairs. 190433 records in RAM.
INFO 2026-06-08 09:13:43 MarkDuplicates Read 467,000,000 records. Elapsed time: 00:15:10s. Time for last 1,000,000: 2s. Last read position: chr17:8,141,318
INFO 2026-06-08 09:13:43 MarkDuplicates Tracking 515087 as yet unmatched pairs. 187522 records in RAM.
INFO 2026-06-08 09:13:46 MarkDuplicates Read 468,000,000 records. Elapsed time: 00:15:13s. Time for last 1,000,000: 2s. Last read position: chr17:16,381,998
INFO 2026-06-08 09:13:46 MarkDuplicates Tracking 515842 as yet unmatched pairs. 188275 records in RAM.
INFO 2026-06-08 09:13:47 MarkDuplicates Read 469,000,000 records. Elapsed time: 00:15:14s. Time for last 1,000,000: 1s. Last read position: chr17:18,246,659
INFO 2026-06-08 09:13:47 MarkDuplicates Tracking 507894 as yet unmatched pairs. 180318 records in RAM.
INFO 2026-06-08 09:13:49 MarkDuplicates Read 470,000,000 records. Elapsed time: 00:15:16s. Time for last 1,000,000: 1s. Last read position: chr17:27,303,601
INFO 2026-06-08 09:13:49 MarkDuplicates Tracking 505808 as yet unmatched pairs. 178232 records in RAM.
INFO 2026-06-08 09:13:51 MarkDuplicates Read 471,000,000 records. Elapsed time: 00:15:18s. Time for last 1,000,000: 1s. Last read position: chr17:29,053,024
INFO 2026-06-08 09:13:51 MarkDuplicates Tracking 501196 as yet unmatched pairs. 173619 records in RAM.
INFO 2026-06-08 09:13:52 MarkDuplicates Read 472,000,000 records. Elapsed time: 00:15:19s. Time for last 1,000,000: 1s. Last read position: chr17:31,336,868
INFO 2026-06-08 09:13:52 MarkDuplicates Tracking 498571 as yet unmatched pairs. 170993 records in RAM.
INFO 2026-06-08 09:13:54 MarkDuplicates Read 473,000,000 records. Elapsed time: 00:15:21s. Time for last 1,000,000: 1s. Last read position: chr17:36,064,365
INFO 2026-06-08 09:13:54 MarkDuplicates Tracking 499986 as yet unmatched pairs. 172403 records in RAM.
INFO 2026-06-08 09:13:55 MarkDuplicates Read 474,000,000 records. Elapsed time: 00:15:22s. Time for last 1,000,000: 1s. Last read position: chr17:38,850,374
INFO 2026-06-08 09:13:55 MarkDuplicates Tracking 498834 as yet unmatched pairs. 171250 records in RAM.
INFO 2026-06-08 09:13:57 MarkDuplicates Read 475,000,000 records. Elapsed time: 00:15:24s. Time for last 1,000,000: 1s. Last read position: chr17:40,088,431
INFO 2026-06-08 09:13:57 MarkDuplicates Tracking 489248 as yet unmatched pairs. 161664 records in RAM.
INFO 2026-06-08 09:13:59 MarkDuplicates Read 476,000,000 records. Elapsed time: 00:15:26s. Time for last 1,000,000: 1s. Last read position: chr17:41,516,906
INFO 2026-06-08 09:13:59 MarkDuplicates Tracking 495145 as yet unmatched pairs. 167548 records in RAM.
INFO 2026-06-08 09:14:01 MarkDuplicates Read 477,000,000 records. Elapsed time: 00:15:28s. Time for last 1,000,000: 1s. Last read position: chr17:41,583,793
INFO 2026-06-08 09:14:01 MarkDuplicates Tracking 498567 as yet unmatched pairs. 170970 records in RAM.
INFO 2026-06-08 09:14:02 MarkDuplicates Read 478,000,000 records. Elapsed time: 00:15:29s. Time for last 1,000,000: 1s. Last read position: chr17:41,619,584
INFO 2026-06-08 09:14:02 MarkDuplicates Tracking 494549 as yet unmatched pairs. 166952 records in RAM.
INFO 2026-06-08 09:14:05 MarkDuplicates Read 479,000,000 records. Elapsed time: 00:15:32s. Time for last 1,000,000: 2s. Last read position: chr17:41,624,293
INFO 2026-06-08 09:14:05 MarkDuplicates Tracking 513568 as yet unmatched pairs. 185965 records in RAM.
INFO 2026-06-08 09:14:06 MarkDuplicates Read 480,000,000 records. Elapsed time: 00:15:33s. Time for last 1,000,000: 1s. Last read position: chr17:42,126,701
INFO 2026-06-08 09:14:06 MarkDuplicates Tracking 472435 as yet unmatched pairs. 144823 records in RAM.
INFO 2026-06-08 09:14:08 MarkDuplicates Read 481,000,000 records. Elapsed time: 00:15:35s. Time for last 1,000,000: 1s. Last read position: chr17:43,202,680
INFO 2026-06-08 09:14:08 MarkDuplicates Tracking 468341 as yet unmatched pairs. 140723 records in RAM.
INFO 2026-06-08 09:14:10 MarkDuplicates Read 482,000,000 records. Elapsed time: 00:15:37s. Time for last 1,000,000: 1s. Last read position: chr17:45,061,335
INFO 2026-06-08 09:14:10 MarkDuplicates Tracking 464447 as yet unmatched pairs. 136828 records in RAM.
INFO 2026-06-08 09:14:12 MarkDuplicates Read 483,000,000 records. Elapsed time: 00:15:39s. Time for last 1,000,000: 1s. Last read position: chr17:48,121,267
INFO 2026-06-08 09:14:12 MarkDuplicates Tracking 461470 as yet unmatched pairs. 133850 records in RAM.
INFO 2026-06-08 09:14:14 MarkDuplicates Read 484,000,000 records. Elapsed time: 00:15:41s. Time for last 1,000,000: 1s. Last read position: chr17:50,089,115
INFO 2026-06-08 09:14:14 MarkDuplicates Tracking 460977 as yet unmatched pairs. 133355 records in RAM.
INFO 2026-06-08 09:14:15 MarkDuplicates Read 485,000,000 records. Elapsed time: 00:15:42s. Time for last 1,000,000: 1s. Last read position: chr17:50,185,926
INFO 2026-06-08 09:14:15 MarkDuplicates Tracking 484538 as yet unmatched pairs. 156913 records in RAM.
INFO 2026-06-08 09:14:17 MarkDuplicates Read 486,000,000 records. Elapsed time: 00:15:44s. Time for last 1,000,000: 1s. Last read position: chr17:50,186,764
INFO 2026-06-08 09:14:17 MarkDuplicates Tracking 480883 as yet unmatched pairs. 153255 records in RAM.
INFO 2026-06-08 09:15:22 MarkDuplicates Read 487,000,000 records. Elapsed time: 00:16:49s. Time for last 1,000,000: 64s. Last read position: chr17:50,187,098
INFO 2026-06-08 09:15:22 MarkDuplicates Tracking 561926 as yet unmatched pairs. 234296 records in RAM.
INFO 2026-06-08 09:16:36 MarkDuplicates Read 488,000,000 records. Elapsed time: 00:18:03s. Time for last 1,000,000: 74s. Last read position: chr17:50,187,947
INFO 2026-06-08 09:16:36 MarkDuplicates Tracking 575086 as yet unmatched pairs. 247455 records in RAM.
INFO 2026-06-08 09:16:38 MarkDuplicates Read 489,000,000 records. Elapsed time: 00:18:05s. Time for last 1,000,000: 2s. Last read position: chr17:50,188,580
INFO 2026-06-08 09:16:38 MarkDuplicates Tracking 542333 as yet unmatched pairs. 214702 records in RAM.
INFO 2026-06-08 09:16:40 MarkDuplicates Read 490,000,000 records. Elapsed time: 00:18:07s. Time for last 1,000,000: 1s. Last read position: chr17:50,188,958
INFO 2026-06-08 09:16:40 MarkDuplicates Tracking 536555 as yet unmatched pairs. 208923 records in RAM.
INFO 2026-06-08 09:16:42 MarkDuplicates Read 491,000,000 records. Elapsed time: 00:18:09s. Time for last 1,000,000: 1s. Last read position: chr17:50,189,426
INFO 2026-06-08 09:16:42 MarkDuplicates Tracking 522867 as yet unmatched pairs. 195231 records in RAM.
INFO 2026-06-08 09:16:44 MarkDuplicates Read 492,000,000 records. Elapsed time: 00:18:11s. Time for last 1,000,000: 1s. Last read position: chr17:50,189,860
INFO 2026-06-08 09:16:44 MarkDuplicates Tracking 546977 as yet unmatched pairs. 219340 records in RAM.
INFO 2026-06-08 09:16:46 MarkDuplicates Read 493,000,000 records. Elapsed time: 00:18:13s. Time for last 1,000,000: 1s. Last read position: chr17:50,190,326
INFO 2026-06-08 09:16:46 MarkDuplicates Tracking 561712 as yet unmatched pairs. 234075 records in RAM.
INFO 2026-06-08 09:16:48 MarkDuplicates Read 494,000,000 records. Elapsed time: 00:18:15s. Time for last 1,000,000: 1s. Last read position: chr17:50,190,886
INFO 2026-06-08 09:16:48 MarkDuplicates Tracking 490952 as yet unmatched pairs. 163312 records in RAM.
INFO 2026-06-08 09:16:49 MarkDuplicates Read 495,000,000 records. Elapsed time: 00:18:16s. Time for last 1,000,000: 1s. Last read position: chr17:50,191,826
INFO 2026-06-08 09:16:49 MarkDuplicates Tracking 539461 as yet unmatched pairs. 211821 records in RAM.
INFO 2026-06-08 09:16:51 MarkDuplicates Read 496,000,000 records. Elapsed time: 00:18:18s. Time for last 1,000,000: 2s. Last read position: chr17:50,192,646
INFO 2026-06-08 09:16:51 MarkDuplicates Tracking 493774 as yet unmatched pairs. 166133 records in RAM.
INFO 2026-06-08 09:16:53 MarkDuplicates Read 497,000,000 records. Elapsed time: 00:18:20s. Time for last 1,000,000: 1s. Last read position: chr17:50,193,004
INFO 2026-06-08 09:16:53 MarkDuplicates Tracking 540420 as yet unmatched pairs. 212777 records in RAM.
INFO 2026-06-08 09:16:55 MarkDuplicates Read 498,000,000 records. Elapsed time: 00:18:22s. Time for last 1,000,000: 1s. Last read position: chr17:50,194,017
INFO 2026-06-08 09:16:55 MarkDuplicates Tracking 558353 as yet unmatched pairs. 230705 records in RAM.
INFO 2026-06-08 09:16:57 MarkDuplicates Read 499,000,000 records. Elapsed time: 00:18:24s. Time for last 1,000,000: 1s. Last read position: chr17:50,194,395
INFO 2026-06-08 09:16:57 MarkDuplicates Tracking 531282 as yet unmatched pairs. 203634 records in RAM.
INFO 2026-06-08 09:16:59 MarkDuplicates Read 500,000,000 records. Elapsed time: 00:18:26s. Time for last 1,000,000: 1s. Last read position: chr17:50,194,755
INFO 2026-06-08 09:16:59 MarkDuplicates Tracking 510815 as yet unmatched pairs. 183167 records in RAM.
INFO 2026-06-08 09:17:01 MarkDuplicates Read 501,000,000 records. Elapsed time: 00:18:28s. Time for last 1,000,000: 1s. Last read position: chr17:50,195,282
INFO 2026-06-08 09:17:01 MarkDuplicates Tracking 521233 as yet unmatched pairs. 193576 records in RAM.
INFO 2026-06-08 09:17:02 MarkDuplicates Read 502,000,000 records. Elapsed time: 00:18:29s. Time for last 1,000,000: 1s. Last read position: chr17:50,195,619
INFO 2026-06-08 09:17:02 MarkDuplicates Tracking 531715 as yet unmatched pairs. 204057 records in RAM.
INFO 2026-06-08 09:17:04 MarkDuplicates Read 503,000,000 records. Elapsed time: 00:18:31s. Time for last 1,000,000: 1s. Last read position: chr17:50,196,182
INFO 2026-06-08 09:17:04 MarkDuplicates Tracking 518256 as yet unmatched pairs. 190598 records in RAM.
INFO 2026-06-08 09:17:06 MarkDuplicates Read 504,000,000 records. Elapsed time: 00:18:33s. Time for last 1,000,000: 1s. Last read position: chr17:50,196,616
INFO 2026-06-08 09:17:06 MarkDuplicates Tracking 514773 as yet unmatched pairs. 187115 records in RAM.
INFO 2026-06-08 09:17:08 MarkDuplicates Read 505,000,000 records. Elapsed time: 00:18:35s. Time for last 1,000,000: 1s. Last read position: chr17:50,197,212
INFO 2026-06-08 09:17:08 MarkDuplicates Tracking 547269 as yet unmatched pairs. 219611 records in RAM.
INFO 2026-06-08 09:17:10 MarkDuplicates Read 506,000,000 records. Elapsed time: 00:18:37s. Time for last 1,000,000: 1s. Last read position: chr17:50,198,178
INFO 2026-06-08 09:17:10 MarkDuplicates Tracking 466700 as yet unmatched pairs. 139037 records in RAM.
INFO 2026-06-08 09:17:12 MarkDuplicates Read 507,000,000 records. Elapsed time: 00:18:39s. Time for last 1,000,000: 1s. Last read position: chr17:50,199,288
INFO 2026-06-08 09:17:12 MarkDuplicates Tracking 464351 as yet unmatched pairs. 136684 records in RAM.
INFO 2026-06-08 09:17:14 MarkDuplicates Read 508,000,000 records. Elapsed time: 00:18:41s. Time for last 1,000,000: 1s. Last read position: chr17:50,199,852
INFO 2026-06-08 09:17:14 MarkDuplicates Tracking 419124 as yet unmatched pairs. 91450 records in RAM.
INFO 2026-06-08 09:17:16 MarkDuplicates Read 509,000,000 records. Elapsed time: 00:18:43s. Time for last 1,000,000: 1s. Last read position: chr17:51,166,929
INFO 2026-06-08 09:17:16 MarkDuplicates Tracking 376868 as yet unmatched pairs. 49194 records in RAM.
INFO 2026-06-08 09:17:17 MarkDuplicates Read 510,000,000 records. Elapsed time: 00:18:44s. Time for last 1,000,000: 1s. Last read position: chr17:59,661,612
INFO 2026-06-08 09:17:17 MarkDuplicates Tracking 375186 as yet unmatched pairs. 47510 records in RAM.
INFO 2026-06-08 09:17:19 MarkDuplicates Read 511,000,000 records. Elapsed time: 00:18:46s. Time for last 1,000,000: 1s. Last read position: chr17:60,073,178
INFO 2026-06-08 09:17:19 MarkDuplicates Tracking 366267 as yet unmatched pairs. 38586 records in RAM.
INFO 2026-06-08 09:17:21 MarkDuplicates Read 512,000,000 records. Elapsed time: 00:18:48s. Time for last 1,000,000: 1s. Last read position: chr17:63,830,347
INFO 2026-06-08 09:17:21 MarkDuplicates Tracking 363686 as yet unmatched pairs. 36004 records in RAM.
INFO 2026-06-08 09:17:23 MarkDuplicates Read 513,000,000 records. Elapsed time: 00:18:50s. Time for last 1,000,000: 2s. Last read position: chr17:68,278,090
INFO 2026-06-08 09:17:23 MarkDuplicates Tracking 360208 as yet unmatched pairs. 32519 records in RAM.
INFO 2026-06-08 09:17:25 MarkDuplicates Read 514,000,000 records. Elapsed time: 00:18:52s. Time for last 1,000,000: 1s. Last read position: chr17:75,040,139
INFO 2026-06-08 09:17:25 MarkDuplicates Tracking 358182 as yet unmatched pairs. 30487 records in RAM.
INFO 2026-06-08 09:17:26 MarkDuplicates Read 515,000,000 records. Elapsed time: 00:18:53s. Time for last 1,000,000: 1s. Last read position: chr17:75,737,554
INFO 2026-06-08 09:17:26 MarkDuplicates Tracking 357573 as yet unmatched pairs. 29878 records in RAM.
INFO 2026-06-08 09:17:28 MarkDuplicates Read 516,000,000 records. Elapsed time: 00:18:55s. Time for last 1,000,000: 1s. Last read position: chr17:75,874,435
INFO 2026-06-08 09:17:28 MarkDuplicates Tracking 350586 as yet unmatched pairs. 22891 records in RAM.
INFO 2026-06-08 09:17:30 MarkDuplicates Read 517,000,000 records. Elapsed time: 00:18:57s. Time for last 1,000,000: 2s. Last read position: chr17:77,402,131
INFO 2026-06-08 09:17:30 MarkDuplicates Tracking 347852 as yet unmatched pairs. 20155 records in RAM.
INFO 2026-06-08 09:17:32 MarkDuplicates Read 518,000,000 records. Elapsed time: 00:18:59s. Time for last 1,000,000: 1s. Last read position: chr17:78,972,593
INFO 2026-06-08 09:17:32 MarkDuplicates Tracking 346283 as yet unmatched pairs. 18584 records in RAM.
INFO 2026-06-08 09:17:33 MarkDuplicates Read 519,000,000 records. Elapsed time: 00:19:00s. Time for last 1,000,000: 1s. Last read position: chr17:80,994,648
INFO 2026-06-08 09:17:33 MarkDuplicates Tracking 339217 as yet unmatched pairs. 11518 records in RAM.
INFO 2026-06-08 09:17:35 MarkDuplicates Read 520,000,000 records. Elapsed time: 00:19:02s. Time for last 1,000,000: 1s. Last read position: chr17:81,693,676
INFO 2026-06-08 09:17:35 MarkDuplicates Tracking 336241 as yet unmatched pairs. 8541 records in RAM.
INFO 2026-06-08 09:17:37 MarkDuplicates Read 521,000,000 records. Elapsed time: 00:19:04s. Time for last 1,000,000: 1s. Last read position: chr17:82,010,809
INFO 2026-06-08 09:17:37 MarkDuplicates Tracking 332706 as yet unmatched pairs. 5005 records in RAM.
INFO 2026-06-08 09:17:38 MarkDuplicates Read 522,000,000 records. Elapsed time: 00:19:05s. Time for last 1,000,000: 1s. Last read position: chr17:82,884,141
INFO 2026-06-08 09:17:38 MarkDuplicates Tracking 328956 as yet unmatched pairs. 1251 records in RAM.
INFO 2026-06-08 09:17:41 MarkDuplicates Read 523,000,000 records. Elapsed time: 00:19:08s. Time for last 1,000,000: 2s. Last read position: chr18:6,976,029
INFO 2026-06-08 09:17:41 MarkDuplicates Tracking 325732 as yet unmatched pairs. 21113 records in RAM.
INFO 2026-06-08 09:17:43 MarkDuplicates Read 524,000,000 records. Elapsed time: 00:19:10s. Time for last 1,000,000: 2s. Last read position: chr18:12,325,091
INFO 2026-06-08 09:17:43 MarkDuplicates Tracking 325445 as yet unmatched pairs. 20824 records in RAM.
INFO 2026-06-08 09:17:44 MarkDuplicates Read 525,000,000 records. Elapsed time: 00:19:11s. Time for last 1,000,000: 1s. Last read position: chr18:23,827,393
INFO 2026-06-08 09:17:44 MarkDuplicates Tracking 318822 as yet unmatched pairs. 14193 records in RAM.
INFO 2026-06-08 09:17:46 MarkDuplicates Read 526,000,000 records. Elapsed time: 00:19:13s. Time for last 1,000,000: 1s. Last read position: chr18:23,928,623
INFO 2026-06-08 09:17:46 MarkDuplicates Tracking 317673 as yet unmatched pairs. 13043 records in RAM.
INFO 2026-06-08 09:17:48 MarkDuplicates Read 527,000,000 records. Elapsed time: 00:19:15s. Time for last 1,000,000: 1s. Last read position: chr18:31,018,686
INFO 2026-06-08 09:17:48 MarkDuplicates Tracking 314864 as yet unmatched pairs. 10229 records in RAM.
INFO 2026-06-08 09:17:49 MarkDuplicates Read 528,000,000 records. Elapsed time: 00:19:16s. Time for last 1,000,000: 1s. Last read position: chr18:36,718,561
INFO 2026-06-08 09:17:49 MarkDuplicates Tracking 310303 as yet unmatched pairs. 5662 records in RAM.
INFO 2026-06-08 09:17:51 MarkDuplicates Read 529,000,000 records. Elapsed time: 00:19:18s. Time for last 1,000,000: 1s. Last read position: chr18:59,359,079
INFO 2026-06-08 09:17:51 MarkDuplicates Tracking 307610 as yet unmatched pairs. 2965 records in RAM.
INFO 2026-06-08 09:17:53 MarkDuplicates Read 530,000,000 records. Elapsed time: 00:19:20s. Time for last 1,000,000: 2s. Last read position: chr19:579,618
INFO 2026-06-08 09:17:53 MarkDuplicates Tracking 311718 as yet unmatched pairs. 138166 records in RAM.
INFO 2026-06-08 09:17:55 MarkDuplicates Read 531,000,000 records. Elapsed time: 00:19:22s. Time for last 1,000,000: 2s. Last read position: chr19:1,032,429
INFO 2026-06-08 09:17:55 MarkDuplicates Tracking 301338 as yet unmatched pairs. 127786 records in RAM.
INFO 2026-06-08 09:17:57 MarkDuplicates Read 532,000,000 records. Elapsed time: 00:19:24s. Time for last 1,000,000: 1s. Last read position: chr19:1,438,419
INFO 2026-06-08 09:17:57 MarkDuplicates Tracking 296348 as yet unmatched pairs. 122796 records in RAM.
INFO 2026-06-08 09:17:58 MarkDuplicates Read 533,000,000 records. Elapsed time: 00:19:25s. Time for last 1,000,000: 1s. Last read position: chr19:2,046,508
INFO 2026-06-08 09:17:58 MarkDuplicates Tracking 292488 as yet unmatched pairs. 118930 records in RAM.
INFO 2026-06-08 09:18:00 MarkDuplicates Read 534,000,000 records. Elapsed time: 00:19:27s. Time for last 1,000,000: 1s. Last read position: chr19:3,155,866
INFO 2026-06-08 09:18:00 MarkDuplicates Tracking 288222 as yet unmatched pairs. 114656 records in RAM.
INFO 2026-06-08 09:18:02 MarkDuplicates Read 535,000,000 records. Elapsed time: 00:19:29s. Time for last 1,000,000: 1s. Last read position: chr19:4,446,653
INFO 2026-06-08 09:18:02 MarkDuplicates Tracking 283841 as yet unmatched pairs. 110267 records in RAM.
INFO 2026-06-08 09:18:03 MarkDuplicates Read 536,000,000 records. Elapsed time: 00:19:30s. Time for last 1,000,000: 1s. Last read position: chr19:5,667,818
INFO 2026-06-08 09:18:03 MarkDuplicates Tracking 280257 as yet unmatched pairs. 106677 records in RAM.
INFO 2026-06-08 09:18:06 MarkDuplicates Read 537,000,000 records. Elapsed time: 00:19:33s. Time for last 1,000,000: 2s. Last read position: chr19:7,463,833
INFO 2026-06-08 09:18:06 MarkDuplicates Tracking 276751 as yet unmatched pairs. 103171 records in RAM.
INFO 2026-06-08 09:18:08 MarkDuplicates Read 538,000,000 records. Elapsed time: 00:19:35s. Time for last 1,000,000: 1s. Last read position: chr19:8,369,274
INFO 2026-06-08 09:18:08 MarkDuplicates Tracking 275985 as yet unmatched pairs. 102404 records in RAM.
INFO 2026-06-08 09:18:09 MarkDuplicates Read 539,000,000 records. Elapsed time: 00:19:36s. Time for last 1,000,000: 1s. Last read position: chr19:10,140,090
INFO 2026-06-08 09:18:09 MarkDuplicates Tracking 268918 as yet unmatched pairs. 95332 records in RAM.
INFO 2026-06-08 09:18:11 MarkDuplicates Read 540,000,000 records. Elapsed time: 00:19:38s. Time for last 1,000,000: 1s. Last read position: chr19:10,829,113
INFO 2026-06-08 09:18:11 MarkDuplicates Tracking 265969 as yet unmatched pairs. 92383 records in RAM.
INFO 2026-06-08 09:18:12 MarkDuplicates Read 541,000,000 records. Elapsed time: 00:19:39s. Time for last 1,000,000: 1s. Last read position: chr19:11,666,679
INFO 2026-06-08 09:18:12 MarkDuplicates Tracking 261686 as yet unmatched pairs. 88099 records in RAM.
INFO 2026-06-08 09:18:14 MarkDuplicates Read 542,000,000 records. Elapsed time: 00:19:41s. Time for last 1,000,000: 1s. Last read position: chr19:12,943,775
INFO 2026-06-08 09:18:14 MarkDuplicates Tracking 258680 as yet unmatched pairs. 85093 records in RAM.
INFO 2026-06-08 09:18:16 MarkDuplicates Read 543,000,000 records. Elapsed time: 00:19:43s. Time for last 1,000,000: 1s. Last read position: chr19:14,396,347
INFO 2026-06-08 09:18:16 MarkDuplicates Tracking 255634 as yet unmatched pairs. 82040 records in RAM.
INFO 2026-06-08 09:18:17 MarkDuplicates Read 544,000,000 records. Elapsed time: 00:19:44s. Time for last 1,000,000: 1s. Last read position: chr19:14,621,773
INFO 2026-06-08 09:18:17 MarkDuplicates Tracking 251523 as yet unmatched pairs. 77927 records in RAM.
INFO 2026-06-08 09:18:19 MarkDuplicates Read 545,000,000 records. Elapsed time: 00:19:46s. Time for last 1,000,000: 1s. Last read position: chr19:15,265,475
INFO 2026-06-08 09:18:19 MarkDuplicates Tracking 250683 as yet unmatched pairs. 77076 records in RAM.
INFO 2026-06-08 09:18:21 MarkDuplicates Read 546,000,000 records. Elapsed time: 00:19:48s. Time for last 1,000,000: 1s. Last read position: chr19:17,195,164
INFO 2026-06-08 09:18:21 MarkDuplicates Tracking 244607 as yet unmatched pairs. 70992 records in RAM.
INFO 2026-06-08 09:18:22 MarkDuplicates Read 547,000,000 records. Elapsed time: 00:19:49s. Time for last 1,000,000: 1s. Last read position: chr19:17,933,026
INFO 2026-06-08 09:18:22 MarkDuplicates Tracking 240072 as yet unmatched pairs. 66457 records in RAM.
INFO 2026-06-08 09:18:24 MarkDuplicates Read 548,000,000 records. Elapsed time: 00:19:51s. Time for last 1,000,000: 1s. Last read position: chr19:18,575,086
INFO 2026-06-08 09:18:24 MarkDuplicates Tracking 237127 as yet unmatched pairs. 63507 records in RAM.
INFO 2026-06-08 09:18:25 MarkDuplicates Read 549,000,000 records. Elapsed time: 00:19:52s. Time for last 1,000,000: 1s. Last read position: chr19:19,627,000
INFO 2026-06-08 09:18:25 MarkDuplicates Tracking 232237 as yet unmatched pairs. 58616 records in RAM.
INFO 2026-06-08 09:18:27 MarkDuplicates Read 550,000,000 records. Elapsed time: 00:19:54s. Time for last 1,000,000: 1s. Last read position: chr19:35,019,229
INFO 2026-06-08 09:18:27 MarkDuplicates Tracking 229119 as yet unmatched pairs. 55498 records in RAM.
INFO 2026-06-08 09:18:29 MarkDuplicates Read 551,000,000 records. Elapsed time: 00:19:55s. Time for last 1,000,000: 1s. Last read position: chr19:35,768,159
INFO 2026-06-08 09:18:29 MarkDuplicates Tracking 225023 as yet unmatched pairs. 51402 records in RAM.
INFO 2026-06-08 09:18:31 MarkDuplicates Read 552,000,000 records. Elapsed time: 00:19:58s. Time for last 1,000,000: 2s. Last read position: chr19:38,701,082
INFO 2026-06-08 09:18:31 MarkDuplicates Tracking 222717 as yet unmatched pairs. 49094 records in RAM.
INFO 2026-06-08 09:18:32 MarkDuplicates Read 553,000,000 records. Elapsed time: 00:19:59s. Time for last 1,000,000: 1s. Last read position: chr19:39,408,571
INFO 2026-06-08 09:18:32 MarkDuplicates Tracking 219284 as yet unmatched pairs. 45661 records in RAM.
INFO 2026-06-08 09:18:34 MarkDuplicates Read 554,000,000 records. Elapsed time: 00:20:01s. Time for last 1,000,000: 1s. Last read position: chr19:40,377,804
INFO 2026-06-08 09:18:34 MarkDuplicates Tracking 216230 as yet unmatched pairs. 42595 records in RAM.
INFO 2026-06-08 09:18:36 MarkDuplicates Read 555,000,000 records. Elapsed time: 00:20:03s. Time for last 1,000,000: 1s. Last read position: chr19:41,352,950
INFO 2026-06-08 09:18:36 MarkDuplicates Tracking 211310 as yet unmatched pairs. 37675 records in RAM.
INFO 2026-06-08 09:18:37 MarkDuplicates Read 556,000,000 records. Elapsed time: 00:20:04s. Time for last 1,000,000: 1s. Last read position: chr19:42,289,395
INFO 2026-06-08 09:18:37 MarkDuplicates Tracking 210401 as yet unmatched pairs. 36766 records in RAM.
INFO 2026-06-08 09:18:39 MarkDuplicates Read 557,000,000 records. Elapsed time: 00:20:06s. Time for last 1,000,000: 1s. Last read position: chr19:44,878,296
INFO 2026-06-08 09:18:39 MarkDuplicates Tracking 203876 as yet unmatched pairs. 30241 records in RAM.
INFO 2026-06-08 09:18:40 MarkDuplicates Read 558,000,000 records. Elapsed time: 00:20:07s. Time for last 1,000,000: 1s. Last read position: chr19:45,688,467
INFO 2026-06-08 09:18:40 MarkDuplicates Tracking 199881 as yet unmatched pairs. 26243 records in RAM.
INFO 2026-06-08 09:18:42 MarkDuplicates Read 559,000,000 records. Elapsed time: 00:20:09s. Time for last 1,000,000: 1s. Last read position: chr19:47,341,442
INFO 2026-06-08 09:18:42 MarkDuplicates Tracking 196374 as yet unmatched pairs. 22734 records in RAM.
INFO 2026-06-08 09:18:44 MarkDuplicates Read 560,000,000 records. Elapsed time: 00:20:11s. Time for last 1,000,000: 1s. Last read position: chr19:48,900,784
INFO 2026-06-08 09:18:44 MarkDuplicates Tracking 193431 as yet unmatched pairs. 19791 records in RAM.
INFO 2026-06-08 09:18:45 MarkDuplicates Read 561,000,000 records. Elapsed time: 00:20:12s. Time for last 1,000,000: 1s. Last read position: chr19:49,514,414
INFO 2026-06-08 09:18:45 MarkDuplicates Tracking 191137 as yet unmatched pairs. 17492 records in RAM.
INFO 2026-06-08 09:18:46 MarkDuplicates Read 562,000,000 records. Elapsed time: 00:20:13s. Time for last 1,000,000: 1s. Last read position: chr19:50,041,679
INFO 2026-06-08 09:18:46 MarkDuplicates Tracking 185740 as yet unmatched pairs. 12095 records in RAM.
INFO 2026-06-08 09:18:48 MarkDuplicates Read 563,000,000 records. Elapsed time: 00:20:15s. Time for last 1,000,000: 1s. Last read position: chr19:53,874,335
INFO 2026-06-08 09:18:48 MarkDuplicates Tracking 184770 as yet unmatched pairs. 11122 records in RAM.
INFO 2026-06-08 09:18:50 MarkDuplicates Read 564,000,000 records. Elapsed time: 00:20:17s. Time for last 1,000,000: 1s. Last read position: chr19:55,385,961
INFO 2026-06-08 09:18:50 MarkDuplicates Tracking 181340 as yet unmatched pairs. 7680 records in RAM.
INFO 2026-06-08 09:18:51 MarkDuplicates Read 565,000,000 records. Elapsed time: 00:20:18s. Time for last 1,000,000: 1s. Last read position: chr19:58,261,777
INFO 2026-06-08 09:18:51 MarkDuplicates Tracking 175293 as yet unmatched pairs. 1633 records in RAM.
INFO 2026-06-08 09:18:53 MarkDuplicates Read 566,000,000 records. Elapsed time: 00:20:20s. Time for last 1,000,000: 1s. Last read position: chr20:2,465,806
INFO 2026-06-08 09:18:53 MarkDuplicates Tracking 172994 as yet unmatched pairs. 45545 records in RAM.
INFO 2026-06-08 09:18:55 MarkDuplicates Read 567,000,000 records. Elapsed time: 00:20:22s. Time for last 1,000,000: 1s. Last read position: chr20:5,173,568
INFO 2026-06-08 09:18:55 MarkDuplicates Tracking 168685 as yet unmatched pairs. 41235 records in RAM.
INFO 2026-06-08 09:18:57 MarkDuplicates Read 568,000,000 records. Elapsed time: 00:20:24s. Time for last 1,000,000: 1s. Last read position: chr20:17,658,692
INFO 2026-06-08 09:18:57 MarkDuplicates Tracking 165348 as yet unmatched pairs. 37898 records in RAM.
INFO 2026-06-08 09:18:58 MarkDuplicates Read 569,000,000 records. Elapsed time: 00:20:25s. Time for last 1,000,000: 1s. Last read position: chr20:25,030,799
INFO 2026-06-08 09:18:58 MarkDuplicates Tracking 161812 as yet unmatched pairs. 34362 records in RAM.
INFO 2026-06-08 09:19:00 MarkDuplicates Read 570,000,000 records. Elapsed time: 00:20:27s. Time for last 1,000,000: 2s. Last read position: chr20:34,438,544
INFO 2026-06-08 09:19:00 MarkDuplicates Tracking 158854 as yet unmatched pairs. 31402 records in RAM.
INFO 2026-06-08 09:19:02 MarkDuplicates Read 571,000,000 records. Elapsed time: 00:20:29s. Time for last 1,000,000: 1s. Last read position: chr20:36,500,544
INFO 2026-06-08 09:19:02 MarkDuplicates Tracking 156551 as yet unmatched pairs. 29097 records in RAM.
INFO 2026-06-08 09:19:04 MarkDuplicates Read 572,000,000 records. Elapsed time: 00:20:31s. Time for last 1,000,000: 1s. Last read position: chr20:41,170,177
INFO 2026-06-08 09:19:04 MarkDuplicates Tracking 152779 as yet unmatched pairs. 25325 records in RAM.
INFO 2026-06-08 09:19:05 MarkDuplicates Read 573,000,000 records. Elapsed time: 00:20:32s. Time for last 1,000,000: 1s. Last read position: chr20:45,335,896
INFO 2026-06-08 09:19:05 MarkDuplicates Tracking 149505 as yet unmatched pairs. 22051 records in RAM.
INFO 2026-06-08 09:19:07 MarkDuplicates Read 574,000,000 records. Elapsed time: 00:20:34s. Time for last 1,000,000: 1s. Last read position: chr20:47,276,723
INFO 2026-06-08 09:19:07 MarkDuplicates Tracking 145703 as yet unmatched pairs. 18248 records in RAM.
INFO 2026-06-08 09:19:08 MarkDuplicates Read 575,000,000 records. Elapsed time: 00:20:35s. Time for last 1,000,000: 1s. Last read position: chr20:50,191,285
INFO 2026-06-08 09:19:08 MarkDuplicates Tracking 143559 as yet unmatched pairs. 16104 records in RAM.
INFO 2026-06-08 09:19:10 MarkDuplicates Read 576,000,000 records. Elapsed time: 00:20:37s. Time for last 1,000,000: 1s. Last read position: chr20:58,701,014
INFO 2026-06-08 09:19:10 MarkDuplicates Tracking 138530 as yet unmatched pairs. 11072 records in RAM.
INFO 2026-06-08 09:19:12 MarkDuplicates Read 577,000,000 records. Elapsed time: 00:20:39s. Time for last 1,000,000: 1s. Last read position: chr20:62,310,457
INFO 2026-06-08 09:19:12 MarkDuplicates Tracking 135786 as yet unmatched pairs. 8328 records in RAM.
INFO 2026-06-08 09:19:13 MarkDuplicates Read 578,000,000 records. Elapsed time: 00:20:40s. Time for last 1,000,000: 1s. Last read position: chr20:63,561,390
INFO 2026-06-08 09:19:13 MarkDuplicates Tracking 131370 as yet unmatched pairs. 3912 records in RAM.
INFO 2026-06-08 09:19:15 MarkDuplicates Read 579,000,000 records. Elapsed time: 00:20:42s. Time for last 1,000,000: 1s. Last read position: chr21:6,116,489
INFO 2026-06-08 09:19:15 MarkDuplicates Tracking 127624 as yet unmatched pairs. 26475 records in RAM.
INFO 2026-06-08 09:19:16 MarkDuplicates Read 580,000,000 records. Elapsed time: 00:20:43s. Time for last 1,000,000: 1s. Last read position: chr21:14,966,024
INFO 2026-06-08 09:19:16 MarkDuplicates Tracking 125820 as yet unmatched pairs. 24666 records in RAM.
INFO 2026-06-08 09:19:18 MarkDuplicates Read 581,000,000 records. Elapsed time: 00:20:45s. Time for last 1,000,000: 1s. Last read position: chr21:28,935,195
INFO 2026-06-08 09:19:18 MarkDuplicates Tracking 122072 as yet unmatched pairs. 20918 records in RAM.
INFO 2026-06-08 09:19:19 MarkDuplicates Read 582,000,000 records. Elapsed time: 00:20:46s. Time for last 1,000,000: 1s. Last read position: chr21:33,761,962
INFO 2026-06-08 09:19:19 MarkDuplicates Tracking 119166 as yet unmatched pairs. 18010 records in RAM.
INFO 2026-06-08 09:19:21 MarkDuplicates Read 583,000,000 records. Elapsed time: 00:20:48s. Time for last 1,000,000: 1s. Last read position: chr21:39,180,102
INFO 2026-06-08 09:19:21 MarkDuplicates Tracking 116124 as yet unmatched pairs. 14968 records in RAM.
INFO 2026-06-08 09:19:22 MarkDuplicates Read 584,000,000 records. Elapsed time: 00:20:49s. Time for last 1,000,000: 1s. Last read position: chr21:44,059,168
INFO 2026-06-08 09:19:22 MarkDuplicates Tracking 112633 as yet unmatched pairs. 11472 records in RAM.
INFO 2026-06-08 09:19:24 MarkDuplicates Read 585,000,000 records. Elapsed time: 00:20:51s. Time for last 1,000,000: 1s. Last read position: chr21:45,496,560
INFO 2026-06-08 09:19:24 MarkDuplicates Tracking 110196 as yet unmatched pairs. 9035 records in RAM.
INFO 2026-06-08 09:19:26 MarkDuplicates Read 586,000,000 records. Elapsed time: 00:20:53s. Time for last 1,000,000: 1s. Last read position: chr21:46,112,409
INFO 2026-06-08 09:19:26 MarkDuplicates Tracking 107216 as yet unmatched pairs. 6055 records in RAM.
INFO 2026-06-08 09:19:28 MarkDuplicates Read 587,000,000 records. Elapsed time: 00:20:55s. Time for last 1,000,000: 2s. Last read position: chr22:17,102,200
INFO 2026-06-08 09:19:28 MarkDuplicates Tracking 101439 as yet unmatched pairs. 53573 records in RAM.
INFO 2026-06-08 09:19:30 MarkDuplicates Read 588,000,000 records. Elapsed time: 00:20:57s. Time for last 1,000,000: 1s. Last read position: chr22:20,465,059
INFO 2026-06-08 09:19:30 MarkDuplicates Tracking 97533 as yet unmatched pairs. 49667 records in RAM.
INFO 2026-06-08 09:19:31 MarkDuplicates Read 589,000,000 records. Elapsed time: 00:20:58s. Time for last 1,000,000: 1s. Last read position: chr22:23,285,037
INFO 2026-06-08 09:19:31 MarkDuplicates Tracking 96351 as yet unmatched pairs. 48485 records in RAM.
INFO 2026-06-08 09:19:33 MarkDuplicates Read 590,000,000 records. Elapsed time: 00:21:00s. Time for last 1,000,000: 1s. Last read position: chr22:26,499,108
INFO 2026-06-08 09:19:33 MarkDuplicates Tracking 90124 as yet unmatched pairs. 42257 records in RAM.
INFO 2026-06-08 09:19:35 MarkDuplicates Read 591,000,000 records. Elapsed time: 00:21:02s. Time for last 1,000,000: 1s. Last read position: chr22:29,358,857
INFO 2026-06-08 09:19:35 MarkDuplicates Tracking 86930 as yet unmatched pairs. 39063 records in RAM.
INFO 2026-06-08 09:19:36 MarkDuplicates Read 592,000,000 records. Elapsed time: 00:21:03s. Time for last 1,000,000: 1s. Last read position: chr22:31,715,135
INFO 2026-06-08 09:19:36 MarkDuplicates Tracking 83314 as yet unmatched pairs. 35446 records in RAM.
INFO 2026-06-08 09:19:38 MarkDuplicates Read 593,000,000 records. Elapsed time: 00:21:05s. Time for last 1,000,000: 1s. Last read position: chr22:36,288,381
INFO 2026-06-08 09:19:38 MarkDuplicates Tracking 81041 as yet unmatched pairs. 33171 records in RAM.
INFO 2026-06-08 09:19:40 MarkDuplicates Read 594,000,000 records. Elapsed time: 00:21:07s. Time for last 1,000,000: 2s. Last read position: chr22:36,519,420
INFO 2026-06-08 09:19:40 MarkDuplicates Tracking 76565 as yet unmatched pairs. 28695 records in RAM.
INFO 2026-06-08 09:19:41 MarkDuplicates Read 595,000,000 records. Elapsed time: 00:21:08s. Time for last 1,000,000: 1s. Last read position: chr22:37,922,152
INFO 2026-06-08 09:19:41 MarkDuplicates Tracking 73656 as yet unmatched pairs. 25786 records in RAM.
INFO 2026-06-08 09:19:43 MarkDuplicates Read 596,000,000 records. Elapsed time: 00:21:10s. Time for last 1,000,000: 1s. Last read position: chr22:39,231,645
INFO 2026-06-08 09:19:43 MarkDuplicates Tracking 71688 as yet unmatched pairs. 23817 records in RAM.
INFO 2026-06-08 09:19:44 MarkDuplicates Read 597,000,000 records. Elapsed time: 00:21:11s. Time for last 1,000,000: 1s. Last read position: chr22:41,349,170
INFO 2026-06-08 09:19:44 MarkDuplicates Tracking 66104 as yet unmatched pairs. 18232 records in RAM.
INFO 2026-06-08 09:19:46 MarkDuplicates Read 598,000,000 records. Elapsed time: 00:21:13s. Time for last 1,000,000: 1s. Last read position: chr22:42,893,481
INFO 2026-06-08 09:19:46 MarkDuplicates Tracking 62799 as yet unmatched pairs. 14927 records in RAM.
INFO 2026-06-08 09:19:48 MarkDuplicates Read 599,000,000 records. Elapsed time: 00:21:15s. Time for last 1,000,000: 1s. Last read position: chr22:46,397,798
INFO 2026-06-08 09:19:48 MarkDuplicates Tracking 60477 as yet unmatched pairs. 12605 records in RAM.
INFO 2026-06-08 09:19:49 MarkDuplicates Read 600,000,000 records. Elapsed time: 00:21:16s. Time for last 1,000,000: 1s. Last read position: chr22:50,278,439
INFO 2026-06-08 09:19:49 MarkDuplicates Tracking 54946 as yet unmatched pairs. 7069 records in RAM.
INFO 2026-06-08 09:19:51 MarkDuplicates Read 601,000,000 records. Elapsed time: 00:21:18s. Time for last 1,000,000: 2s. Last read position: chr22:50,526,687
INFO 2026-06-08 09:19:51 MarkDuplicates Tracking 53033 as yet unmatched pairs. 5156 records in RAM.
INFO 2026-06-08 09:19:54 MarkDuplicates Read 602,000,000 records. Elapsed time: 00:21:21s. Time for last 1,000,000: 2s. Last read position: chrX:3,320,773
INFO 2026-06-08 09:19:54 MarkDuplicates Tracking 47278 as yet unmatched pairs. 45399 records in RAM.
INFO 2026-06-08 09:19:55 MarkDuplicates Read 603,000,000 records. Elapsed time: 00:21:22s. Time for last 1,000,000: 1s. Last read position: chrX:20,135,808
INFO 2026-06-08 09:19:55 MarkDuplicates Tracking 43274 as yet unmatched pairs. 41395 records in RAM.
INFO 2026-06-08 09:19:57 MarkDuplicates Read 604,000,000 records. Elapsed time: 00:21:24s. Time for last 1,000,000: 1s. Last read position: chrX:40,597,288
INFO 2026-06-08 09:19:57 MarkDuplicates Tracking 41900 as yet unmatched pairs. 40020 records in RAM.
INFO 2026-06-08 09:19:59 MarkDuplicates Read 605,000,000 records. Elapsed time: 00:21:26s. Time for last 1,000,000: 1s. Last read position: chrX:47,209,966
INFO 2026-06-08 09:19:59 MarkDuplicates Tracking 39007 as yet unmatched pairs. 37127 records in RAM.
INFO 2026-06-08 09:20:00 MarkDuplicates Read 606,000,000 records. Elapsed time: 00:21:27s. Time for last 1,000,000: 1s. Last read position: chrX:48,466,298
INFO 2026-06-08 09:20:00 MarkDuplicates Tracking 35246 as yet unmatched pairs. 33366 records in RAM.
INFO 2026-06-08 09:20:02 MarkDuplicates Read 607,000,000 records. Elapsed time: 00:21:29s. Time for last 1,000,000: 1s. Last read position: chrX:51,895,395
INFO 2026-06-08 09:20:02 MarkDuplicates Tracking 30751 as yet unmatched pairs. 28871 records in RAM.
INFO 2026-06-08 09:20:04 MarkDuplicates Read 608,000,000 records. Elapsed time: 00:21:31s. Time for last 1,000,000: 1s. Last read position: chrX:54,552,379
INFO 2026-06-08 09:20:04 MarkDuplicates Tracking 27407 as yet unmatched pairs. 25527 records in RAM.
INFO 2026-06-08 09:20:05 MarkDuplicates Read 609,000,000 records. Elapsed time: 00:21:32s. Time for last 1,000,000: 1s. Last read position: chrX:71,294,415
INFO 2026-06-08 09:20:05 MarkDuplicates Tracking 26070 as yet unmatched pairs. 24190 records in RAM.
INFO 2026-06-08 09:20:07 MarkDuplicates Read 610,000,000 records. Elapsed time: 00:21:34s. Time for last 1,000,000: 1s. Last read position: chrX:78,125,033
INFO 2026-06-08 09:20:07 MarkDuplicates Tracking 24446 as yet unmatched pairs. 22566 records in RAM.
INFO 2026-06-08 09:20:09 MarkDuplicates Read 611,000,000 records. Elapsed time: 00:21:35s. Time for last 1,000,000: 1s. Last read position: chrX:108,655,337
INFO 2026-06-08 09:20:09 MarkDuplicates Tracking 19572 as yet unmatched pairs. 17692 records in RAM.
INFO 2026-06-08 09:20:10 MarkDuplicates Read 612,000,000 records. Elapsed time: 00:21:37s. Time for last 1,000,000: 1s. Last read position: chrX:123,668,159
INFO 2026-06-08 09:20:10 MarkDuplicates Tracking 15343 as yet unmatched pairs. 13463 records in RAM.
INFO 2026-06-08 09:20:12 MarkDuplicates Read 613,000,000 records. Elapsed time: 00:21:39s. Time for last 1,000,000: 1s. Last read position: chrX:150,454,865
INFO 2026-06-08 09:20:12 MarkDuplicates Tracking 12245 as yet unmatched pairs. 10360 records in RAM.
INFO 2026-06-08 09:20:13 MarkDuplicates Read 614,000,000 records. Elapsed time: 00:21:40s. Time for last 1,000,000: 1s. Last read position: chrX:154,011,874
INFO 2026-06-08 09:20:13 MarkDuplicates Tracking 10358 as yet unmatched pairs. 8473 records in RAM.
INFO 2026-06-08 09:20:15 MarkDuplicates Read 615,000,000 records. Elapsed time: 00:21:42s. Time for last 1,000,000: 1s. Last read position: chrX:154,365,140
INFO 2026-06-08 09:20:15 MarkDuplicates Tracking 6226 as yet unmatched pairs. 4341 records in RAM.
INFO 2026-06-08 09:20:17 MarkDuplicates Read 616,000,000 records. Elapsed time: 00:21:44s. Time for last 1,000,000: 1s. Last read position: chrX:155,382,893
INFO 2026-06-08 09:20:17 MarkDuplicates Tracking 2036 as yet unmatched pairs. 151 records in RAM.
INFO 2026-06-08 09:20:18 MarkDuplicates Read 617,000,000 records. Elapsed time: 00:21:45s. Time for last 1,000,000: 1s. Last read position: KI270733.1:178,545
INFO 2026-06-08 09:20:18 MarkDuplicates Tracking 25 as yet unmatched pairs. 1 records in RAM.
INFO 2026-06-08 09:20:18 MarkDuplicates Read 617063424 records. 0 pairs never matched.
INFO 2026-06-08 09:21:06 MarkDuplicates After buildSortedReadEndLists freeMemory: 204142920; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:21:06 MarkDuplicates Will retain up to 1987051520 duplicate indices before spilling to disk.
INFO 2026-06-08 09:21:13 MarkDuplicates Traversing read pair information and detecting duplicates.
WARNING 2026-06-08 09:21:13 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 09:21:26 OpticalDuplicateFinder Large duplicate set. size = 1054
INFO 2026-06-08 09:21:26 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,809
INFO 2026-06-08 09:21:26 OpticalDuplicateFinder Large duplicate set. size = 1099
INFO 2026-06-08 09:21:26 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,734
INFO 2026-06-08 09:21:27 OpticalDuplicateFinder Large duplicate set. size = 1511
INFO 2026-06-08 09:21:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,562
INFO 2026-06-08 09:21:27 OpticalDuplicateFinder Large duplicate set. size = 1715
INFO 2026-06-08 09:21:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,703
INFO 2026-06-08 09:21:27 OpticalDuplicateFinder Large duplicate set. size = 1036
INFO 2026-06-08 09:21:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,349
INFO 2026-06-08 09:21:27 OpticalDuplicateFinder Large duplicate set. size = 1113
INFO 2026-06-08 09:21:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,161
INFO 2026-06-08 09:21:27 OpticalDuplicateFinder Large duplicate set. size = 1045
INFO 2026-06-08 09:21:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,109
INFO 2026-06-08 09:21:29 OpticalDuplicateFinder Large duplicate set. size = 1339
INFO 2026-06-08 09:21:29 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,464
INFO 2026-06-08 09:21:29 OpticalDuplicateFinder Large duplicate set. size = 1463
INFO 2026-06-08 09:21:29 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,388
INFO 2026-06-08 09:21:29 OpticalDuplicateFinder Large duplicate set. size = 1019
INFO 2026-06-08 09:21:29 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,647
INFO 2026-06-08 09:21:30 OpticalDuplicateFinder Large duplicate set. size = 1060
INFO 2026-06-08 09:21:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,466
INFO 2026-06-08 09:21:30 OpticalDuplicateFinder Large duplicate set. size = 1192
INFO 2026-06-08 09:21:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,217
INFO 2026-06-08 09:21:30 OpticalDuplicateFinder Large duplicate set. size = 1110
INFO 2026-06-08 09:21:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,217
INFO 2026-06-08 09:21:30 OpticalDuplicateFinder Large duplicate set. size = 1240
INFO 2026-06-08 09:21:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,967
INFO 2026-06-08 09:22:31 OpticalDuplicateFinder Large duplicate set. size = 1119
INFO 2026-06-08 09:22:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,013
INFO 2026-06-08 09:22:31 OpticalDuplicateFinder Large duplicate set. size = 1052
INFO 2026-06-08 09:22:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,420
INFO 2026-06-08 09:22:31 OpticalDuplicateFinder Large duplicate set. size = 1396
INFO 2026-06-08 09:22:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,179
INFO 2026-06-08 09:22:31 OpticalDuplicateFinder Large duplicate set. size = 1218
INFO 2026-06-08 09:22:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,985
INFO 2026-06-08 09:22:31 OpticalDuplicateFinder Large duplicate set. size = 1883
INFO 2026-06-08 09:22:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,411
INFO 2026-06-08 09:22:31 OpticalDuplicateFinder Large duplicate set. size = 1103
INFO 2026-06-08 09:22:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,067
INFO 2026-06-08 09:22:32 OpticalDuplicateFinder Large duplicate set. size = 1036
INFO 2026-06-08 09:22:32 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,768
INFO 2026-06-08 09:22:32 OpticalDuplicateFinder Large duplicate set. size = 1306
INFO 2026-06-08 09:22:32 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,964
INFO 2026-06-08 09:22:32 OpticalDuplicateFinder Large duplicate set. size = 1081
INFO 2026-06-08 09:22:32 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,030
INFO 2026-06-08 09:22:32 OpticalDuplicateFinder Large duplicate set. size = 1016
INFO 2026-06-08 09:22:32 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,823
INFO 2026-06-08 09:22:32 OpticalDuplicateFinder Large duplicate set. size = 1030
INFO 2026-06-08 09:22:32 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,497
INFO 2026-06-08 09:22:32 OpticalDuplicateFinder Large duplicate set. size = 1093
INFO 2026-06-08 09:22:32 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,460
INFO 2026-06-08 09:22:33 OpticalDuplicateFinder Large duplicate set. size = 1067
INFO 2026-06-08 09:22:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,467
INFO 2026-06-08 09:22:33 OpticalDuplicateFinder Large duplicate set. size = 1019
INFO 2026-06-08 09:22:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,447
INFO 2026-06-08 09:22:33 OpticalDuplicateFinder Large duplicate set. size = 1687
INFO 2026-06-08 09:22:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,785
INFO 2026-06-08 09:22:33 OpticalDuplicateFinder Large duplicate set. size = 1552
INFO 2026-06-08 09:22:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,882
INFO 2026-06-08 09:22:33 OpticalDuplicateFinder Large duplicate set. size = 1026
INFO 2026-06-08 09:22:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,546
INFO 2026-06-08 09:22:33 OpticalDuplicateFinder Large duplicate set. size = 1085
INFO 2026-06-08 09:22:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,849
INFO 2026-06-08 09:22:33 OpticalDuplicateFinder Large duplicate set. size = 1204
INFO 2026-06-08 09:22:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,504
INFO 2026-06-08 09:22:33 OpticalDuplicateFinder Large duplicate set. size = 1311
INFO 2026-06-08 09:22:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,628
INFO 2026-06-08 09:22:33 OpticalDuplicateFinder Large duplicate set. size = 1084
INFO 2026-06-08 09:22:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,950
INFO 2026-06-08 09:22:33 OpticalDuplicateFinder Large duplicate set. size = 1537
INFO 2026-06-08 09:22:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,162
INFO 2026-06-08 09:22:33 OpticalDuplicateFinder Large duplicate set. size = 1066
INFO 2026-06-08 09:22:33 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,589
INFO 2026-06-08 09:22:34 OpticalDuplicateFinder Large duplicate set. size = 1394
INFO 2026-06-08 09:22:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,769
INFO 2026-06-08 09:22:34 OpticalDuplicateFinder Large duplicate set. size = 1224
INFO 2026-06-08 09:22:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,256
INFO 2026-06-08 09:22:34 OpticalDuplicateFinder Large duplicate set. size = 1238
INFO 2026-06-08 09:22:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-13,973
INFO 2026-06-08 09:22:34 OpticalDuplicateFinder Large duplicate set. size = 1089
INFO 2026-06-08 09:22:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,000
INFO 2026-06-08 09:22:34 OpticalDuplicateFinder Large duplicate set. size = 1207
INFO 2026-06-08 09:22:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,770
INFO 2026-06-08 09:22:34 OpticalDuplicateFinder Large duplicate set. size = 1481
INFO 2026-06-08 09:22:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,231
INFO 2026-06-08 09:22:34 OpticalDuplicateFinder Large duplicate set. size = 1542
INFO 2026-06-08 09:22:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,407
INFO 2026-06-08 09:22:34 OpticalDuplicateFinder Large duplicate set. size = 2492
INFO 2026-06-08 09:22:34 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,690
INFO 2026-06-08 09:22:34 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,573
INFO 2026-06-08 09:22:35 OpticalDuplicateFinder Large duplicate set. size = 1402
INFO 2026-06-08 09:22:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,257
INFO 2026-06-08 09:22:35 OpticalDuplicateFinder Large duplicate set. size = 1149
INFO 2026-06-08 09:22:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,600
INFO 2026-06-08 09:22:35 OpticalDuplicateFinder Large duplicate set. size = 1754
INFO 2026-06-08 09:22:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,663
INFO 2026-06-08 09:22:35 OpticalDuplicateFinder Large duplicate set. size = 1169
INFO 2026-06-08 09:22:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,804
INFO 2026-06-08 09:22:35 OpticalDuplicateFinder Large duplicate set. size = 1316
INFO 2026-06-08 09:22:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,102
INFO 2026-06-08 09:22:35 OpticalDuplicateFinder Large duplicate set. size = 2179
INFO 2026-06-08 09:22:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,931
INFO 2026-06-08 09:22:35 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,668
INFO 2026-06-08 09:22:35 OpticalDuplicateFinder Large duplicate set. size = 1048
INFO 2026-06-08 09:22:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,297
INFO 2026-06-08 09:22:35 OpticalDuplicateFinder Large duplicate set. size = 1575
INFO 2026-06-08 09:22:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,752
INFO 2026-06-08 09:22:35 OpticalDuplicateFinder Large duplicate set. size = 1176
INFO 2026-06-08 09:22:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,731
INFO 2026-06-08 09:22:35 OpticalDuplicateFinder Large duplicate set. size = 1660
INFO 2026-06-08 09:22:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,242
INFO 2026-06-08 09:22:35 OpticalDuplicateFinder Large duplicate set. size = 1068
INFO 2026-06-08 09:22:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,456
INFO 2026-06-08 09:22:35 OpticalDuplicateFinder Large duplicate set. size = 1078
INFO 2026-06-08 09:22:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,973
INFO 2026-06-08 09:22:35 OpticalDuplicateFinder Large duplicate set. size = 1166
INFO 2026-06-08 09:22:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,086
INFO 2026-06-08 09:22:35 OpticalDuplicateFinder Large duplicate set. size = 1350
INFO 2026-06-08 09:22:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,844
INFO 2026-06-08 09:22:35 OpticalDuplicateFinder Large duplicate set. size = 1009
INFO 2026-06-08 09:22:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,597
INFO 2026-06-08 09:22:35 OpticalDuplicateFinder Large duplicate set. size = 1226
INFO 2026-06-08 09:22:35 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,177
INFO 2026-06-08 09:22:36 OpticalDuplicateFinder Large duplicate set. size = 1124
INFO 2026-06-08 09:22:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,465
INFO 2026-06-08 09:22:36 OpticalDuplicateFinder Large duplicate set. size = 1141
INFO 2026-06-08 09:22:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,294
INFO 2026-06-08 09:22:36 OpticalDuplicateFinder Large duplicate set. size = 1396
INFO 2026-06-08 09:22:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,706
INFO 2026-06-08 09:22:50 MarkDuplicates Traversing fragment information and detecting duplicates.
WARNING 2026-06-08 09:22:50 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 09:23:56 MarkDuplicates Sorting list of duplicate records.
INFO 2026-06-08 09:24:02 MarkDuplicates After generateDuplicateIndexes freeMemory: 203917920; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:24:02 MarkDuplicates Marking 373928336 records as duplicates.
INFO 2026-06-08 09:24:02 MarkDuplicates Found 20394000 optical duplicate clusters.
INFO 2026-06-08 09:24:02 MarkDuplicates Reads are assumed to be ordered by: coordinate
INFO 2026-06-08 09:24:20 MarkDuplicates Written 10,000,000 records. Elapsed time: 00:00:17s. Time for last 10,000,000: 17s. Last read position: chr1:21,575,816
INFO 2026-06-08 09:24:38 MarkDuplicates Written 20,000,000 records. Elapsed time: 00:00:35s. Time for last 10,000,000: 17s. Last read position: chr1:36,466,146
INFO 2026-06-08 09:24:55 MarkDuplicates Written 30,000,000 records. Elapsed time: 00:00:52s. Time for last 10,000,000: 17s. Last read position: chr1:108,992,615
INFO 2026-06-08 09:25:12 MarkDuplicates Written 40,000,000 records. Elapsed time: 00:01:10s. Time for last 10,000,000: 17s. Last read position: chr1:154,970,376
INFO 2026-06-08 09:25:30 MarkDuplicates Written 50,000,000 records. Elapsed time: 00:01:27s. Time for last 10,000,000: 17s. Last read position: chr1:183,236,466
INFO 2026-06-08 09:25:47 MarkDuplicates Written 60,000,000 records. Elapsed time: 00:01:44s. Time for last 10,000,000: 17s. Last read position: chr1:233,372,116
INFO 2026-06-08 09:26:05 MarkDuplicates Written 70,000,000 records. Elapsed time: 00:02:02s. Time for last 10,000,000: 17s. Last read position: chr2:32,916,264
INFO 2026-06-08 09:26:22 MarkDuplicates Written 80,000,000 records. Elapsed time: 00:02:19s. Time for last 10,000,000: 17s. Last read position: chr2:74,159,224
INFO 2026-06-08 09:26:39 MarkDuplicates Written 90,000,000 records. Elapsed time: 00:02:36s. Time for last 10,000,000: 17s. Last read position: chr2:161,341,154
INFO 2026-06-08 09:26:57 MarkDuplicates Written 100,000,000 records. Elapsed time: 00:02:54s. Time for last 10,000,000: 17s. Last read position: chr2:215,361,514
INFO 2026-06-08 09:27:14 MarkDuplicates Written 110,000,000 records. Elapsed time: 00:03:11s. Time for last 10,000,000: 17s. Last read position: chr2:215,397,138
INFO 2026-06-08 09:27:31 MarkDuplicates Written 120,000,000 records. Elapsed time: 00:03:28s. Time for last 10,000,000: 17s. Last read position: chr2:219,281,725
INFO 2026-06-08 09:27:48 MarkDuplicates Written 130,000,000 records. Elapsed time: 00:03:45s. Time for last 10,000,000: 17s. Last read position: chr3:47,918,733
INFO 2026-06-08 09:28:06 MarkDuplicates Written 140,000,000 records. Elapsed time: 00:04:03s. Time for last 10,000,000: 17s. Last read position: chr3:113,012,740
INFO 2026-06-08 09:28:23 MarkDuplicates Written 150,000,000 records. Elapsed time: 00:04:20s. Time for last 10,000,000: 17s. Last read position: chr3:183,804,157
INFO 2026-06-08 09:28:41 MarkDuplicates Written 160,000,000 records. Elapsed time: 00:04:38s. Time for last 10,000,000: 17s. Last read position: chr4:39,457,646
INFO 2026-06-08 09:28:58 MarkDuplicates Written 170,000,000 records. Elapsed time: 00:04:55s. Time for last 10,000,000: 17s. Last read position: chr5:453,447
INFO 2026-06-08 09:29:16 MarkDuplicates Written 180,000,000 records. Elapsed time: 00:05:13s. Time for last 10,000,000: 17s. Last read position: chr5:131,651,914
INFO 2026-06-08 09:29:33 MarkDuplicates Written 190,000,000 records. Elapsed time: 00:05:30s. Time for last 10,000,000: 17s. Last read position: chr5:172,768,756
INFO 2026-06-08 09:29:50 MarkDuplicates Written 200,000,000 records. Elapsed time: 00:05:47s. Time for last 10,000,000: 17s. Last read position: chr6:31,270,305
INFO 2026-06-08 09:30:08 MarkDuplicates Written 210,000,000 records. Elapsed time: 00:06:05s. Time for last 10,000,000: 17s. Last read position: chr6:44,256,707
INFO 2026-06-08 09:30:25 MarkDuplicates Written 220,000,000 records. Elapsed time: 00:06:22s. Time for last 10,000,000: 17s. Last read position: chr6:152,321,373
INFO 2026-06-08 09:30:42 MarkDuplicates Written 230,000,000 records. Elapsed time: 00:06:39s. Time for last 10,000,000: 17s. Last read position: chr7:23,260,078
INFO 2026-06-08 09:31:00 MarkDuplicates Written 240,000,000 records. Elapsed time: 00:06:57s. Time for last 10,000,000: 17s. Last read position: chr7:75,197,985
INFO 2026-06-08 09:31:17 MarkDuplicates Written 250,000,000 records. Elapsed time: 00:07:14s. Time for last 10,000,000: 17s. Last read position: chr7:116,758,543
INFO 2026-06-08 09:31:34 MarkDuplicates Written 260,000,000 records. Elapsed time: 00:07:31s. Time for last 10,000,000: 17s. Last read position: chr8:38,414,173
INFO 2026-06-08 09:31:52 MarkDuplicates Written 270,000,000 records. Elapsed time: 00:07:49s. Time for last 10,000,000: 17s. Last read position: chr8:132,837,768
INFO 2026-06-08 09:32:09 MarkDuplicates Written 280,000,000 records. Elapsed time: 00:08:06s. Time for last 10,000,000: 17s. Last read position: chr9:33,166,768
INFO 2026-06-08 09:32:26 MarkDuplicates Written 290,000,000 records. Elapsed time: 00:08:23s. Time for last 10,000,000: 17s. Last read position: chr9:115,024,073
INFO 2026-06-08 09:32:43 MarkDuplicates Written 300,000,000 records. Elapsed time: 00:08:40s. Time for last 10,000,000: 17s. Last read position: chr10:5,739,735
INFO 2026-06-08 09:33:01 MarkDuplicates Written 310,000,000 records. Elapsed time: 00:08:58s. Time for last 10,000,000: 17s. Last read position: chr10:77,842,089
INFO 2026-06-08 09:33:18 MarkDuplicates Written 320,000,000 records. Elapsed time: 00:09:15s. Time for last 10,000,000: 17s. Last read position: chr10:133,309,405
INFO 2026-06-08 09:33:36 MarkDuplicates Written 330,000,000 records. Elapsed time: 00:09:33s. Time for last 10,000,000: 17s. Last read position: chr11:45,227,117
INFO 2026-06-08 09:33:53 MarkDuplicates Written 340,000,000 records. Elapsed time: 00:09:50s. Time for last 10,000,000: 17s. Last read position: chr11:64,765,290
INFO 2026-06-08 09:34:11 MarkDuplicates Written 350,000,000 records. Elapsed time: 00:10:08s. Time for last 10,000,000: 17s. Last read position: chr11:75,568,731
INFO 2026-06-08 09:34:28 MarkDuplicates Written 360,000,000 records. Elapsed time: 00:10:25s. Time for last 10,000,000: 17s. Last read position: chr12:2,859,014
INFO 2026-06-08 09:34:46 MarkDuplicates Written 370,000,000 records. Elapsed time: 00:10:43s. Time for last 10,000,000: 17s. Last read position: chr12:49,272,747
INFO 2026-06-08 09:35:03 MarkDuplicates Written 380,000,000 records. Elapsed time: 00:11:00s. Time for last 10,000,000: 17s. Last read position: chr12:57,098,838
INFO 2026-06-08 09:35:20 MarkDuplicates Written 390,000,000 records. Elapsed time: 00:11:17s. Time for last 10,000,000: 17s. Last read position: chr12:118,189,828
INFO 2026-06-08 09:35:38 MarkDuplicates Written 400,000,000 records. Elapsed time: 00:11:35s. Time for last 10,000,000: 17s. Last read position: chr13:102,643,284
INFO 2026-06-08 09:35:55 MarkDuplicates Written 410,000,000 records. Elapsed time: 00:11:52s. Time for last 10,000,000: 17s. Last read position: chr14:60,734,936
INFO 2026-06-08 09:36:13 MarkDuplicates Written 420,000,000 records. Elapsed time: 00:12:10s. Time for last 10,000,000: 17s. Last read position: chr14:104,944,753
INFO 2026-06-08 09:36:30 MarkDuplicates Written 430,000,000 records. Elapsed time: 00:12:27s. Time for last 10,000,000: 17s. Last read position: chr15:64,112,658
INFO 2026-06-08 09:36:48 MarkDuplicates Written 440,000,000 records. Elapsed time: 00:12:45s. Time for last 10,000,000: 17s. Last read position: chr16:3,290,068
INFO 2026-06-08 09:37:05 MarkDuplicates Written 450,000,000 records. Elapsed time: 00:13:02s. Time for last 10,000,000: 17s. Last read position: chr16:30,738,612
INFO 2026-06-08 09:37:23 MarkDuplicates Written 460,000,000 records. Elapsed time: 00:13:20s. Time for last 10,000,000: 17s. Last read position: chr16:87,413,053
INFO 2026-06-08 09:37:40 MarkDuplicates Written 470,000,000 records. Elapsed time: 00:13:37s. Time for last 10,000,000: 17s. Last read position: chr17:27,303,601
INFO 2026-06-08 09:37:57 MarkDuplicates Written 480,000,000 records. Elapsed time: 00:13:54s. Time for last 10,000,000: 17s. Last read position: chr17:42,126,701
INFO 2026-06-08 09:38:14 MarkDuplicates Written 490,000,000 records. Elapsed time: 00:14:11s. Time for last 10,000,000: 17s. Last read position: chr17:50,188,958
INFO 2026-06-08 09:38:32 MarkDuplicates Written 500,000,000 records. Elapsed time: 00:14:29s. Time for last 10,000,000: 17s. Last read position: chr17:50,194,755
INFO 2026-06-08 09:38:49 MarkDuplicates Written 510,000,000 records. Elapsed time: 00:14:46s. Time for last 10,000,000: 17s. Last read position: chr17:59,661,612
INFO 2026-06-08 09:39:07 MarkDuplicates Written 520,000,000 records. Elapsed time: 00:15:04s. Time for last 10,000,000: 17s. Last read position: chr17:81,693,676
INFO 2026-06-08 09:39:24 MarkDuplicates Written 530,000,000 records. Elapsed time: 00:15:21s. Time for last 10,000,000: 17s. Last read position: chr19:579,618
INFO 2026-06-08 09:39:41 MarkDuplicates Written 540,000,000 records. Elapsed time: 00:15:38s. Time for last 10,000,000: 17s. Last read position: chr19:10,829,113
INFO 2026-06-08 09:39:58 MarkDuplicates Written 550,000,000 records. Elapsed time: 00:15:55s. Time for last 10,000,000: 16s. Last read position: chr19:35,019,229
INFO 2026-06-08 09:40:15 MarkDuplicates Written 560,000,000 records. Elapsed time: 00:16:12s. Time for last 10,000,000: 16s. Last read position: chr19:48,900,784
INFO 2026-06-08 09:40:32 MarkDuplicates Written 570,000,000 records. Elapsed time: 00:16:29s. Time for last 10,000,000: 17s. Last read position: chr20:34,438,544
INFO 2026-06-08 09:40:49 MarkDuplicates Written 580,000,000 records. Elapsed time: 00:16:46s. Time for last 10,000,000: 17s. Last read position: chr21:14,966,024
INFO 2026-06-08 09:41:06 MarkDuplicates Written 590,000,000 records. Elapsed time: 00:17:03s. Time for last 10,000,000: 16s. Last read position: chr22:26,499,108
INFO 2026-06-08 09:41:23 MarkDuplicates Written 600,000,000 records. Elapsed time: 00:17:20s. Time for last 10,000,000: 16s. Last read position: chr22:50,278,439
INFO 2026-06-08 09:41:40 MarkDuplicates Written 610,000,000 records. Elapsed time: 00:17:37s. Time for last 10,000,000: 16s. Last read position: chrX:78,125,033
INFO 2026-06-08 09:41:58 MarkDuplicates Written 620,000,000 records. Elapsed time: 00:17:55s. Time for last 10,000,000: 18s. Last read position: */*
INFO 2026-06-08 09:41:59 MarkDuplicates Writing complete. Closing input iterator.
INFO 2026-06-08 09:41:59 MarkDuplicates Duplicate Index cleanup.
INFO 2026-06-08 09:41:59 MarkDuplicates Getting Memory Stats.
INFO 2026-06-08 09:41:59 MarkDuplicates Before output close freeMemory: 203855808; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:41:59 MarkDuplicates Closed outputs. Getting more Memory Stats.
INFO 2026-06-08 09:41:59 MarkDuplicates After output close freeMemory: 104113696; totalMemory: 134217728; maxMemory: 63585648640
[Mon Jun 08 09:41:59 GMT 2026] picard.sam.markduplicates.MarkDuplicates done. Elapsed time: 43.47 minutes.
Runtime.totalMemory()=134217728
ls: *cram: No such file or directory
ls: *.crai: No such file or directory