File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b7/2881982ce1ae0ea91fb3ee1e6b0322/.command.log
Size
3.4 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (659_bCu-T1-TRNA-1_A23MVY2LT4_2)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/80/8be1b0c3629ac0b9f8e610df616ec9/659_bCu-T1-TRNA-1_A23MVY2LT4_2.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ee/f2b17ede776df29469c112f3c524a1/659_bCu-T1-TRNA-1_A23MVY2LT4_2.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-bba2394f-ea06-4038-829e-f0bb41c45b0f/67/1d6e211d8f66f1c89f8ec9083ff96d/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b7/2881982ce1ae0ea91fb3ee1e6b0322/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b7/2881982ce1ae0ea91fb3ee1e6b0322/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
==> STAGING COMPLETE (6 inputs)

Running application...
TNS1--ALK
starfusion
arriba
NAV2--NELL1
starfusion
arriba
TRPC2--WEE1
starfusion
arriba
IRAG1--ZNF143
starfusion
arriba
RHOG--SBF2
starfusion
arriba
ADAM23--HDAC4
starfusion
arriba
PPFIBP2--PARVA
starfusion
arriba
NELL1--INSC
arriba
SBF2--AC087379.1
arriba
SBF2--AC009869.1
arriba
BMS1P23--AFF3
arriba
AL845331.2--AFF3
arriba

  0%|          | 0/12 [00:00<?, ?it/s]
Processing TNS1--ALK:   0%|          | 0/12 [00:00<?, ?it/s]
Processing TNS1--ALK:   8%|▊         | 1/12 [00:00<00:01,  9.14it/s]
Processing NAV2--NELL1:   8%|▊         | 1/12 [00:00<00:01,  9.14it/s]
Processing NAV2--NELL1:  17%|█▋        | 2/12 [00:00<00:01,  9.34it/s]
Processing TRPC2--WEE1:  17%|█▋        | 2/12 [00:00<00:01,  9.34it/s]
Processing TRPC2--WEE1:  25%|██▌       | 3/12 [00:00<00:00,  9.41it/s]
Processing IRAG1--ZNF143:  25%|██▌       | 3/12 [00:00<00:00,  9.41it/s]
Processing IRAG1--ZNF143:  33%|███▎      | 4/12 [00:00<00:00,  9.44it/s]
Processing RHOG--SBF2:  33%|███▎      | 4/12 [00:00<00:00,  9.44it/s]   
Processing RHOG--SBF2:  42%|████▏     | 5/12 [00:00<00:00,  9.46it/s]
Processing ADAM23--HDAC4:  42%|████▏     | 5/12 [00:00<00:00,  9.46it/s]
Processing ADAM23--HDAC4:  50%|█████     | 6/12 [00:00<00:00,  9.47it/s]
Processing PPFIBP2--PARVA:  50%|█████     | 6/12 [00:00<00:00,  9.47it/s]
Processing PPFIBP2--PARVA:  58%|█████▊    | 7/12 [00:00<00:00,  9.46it/s]
Processing NELL1--INSC:  58%|█████▊    | 7/12 [00:00<00:00,  9.46it/s]   
Processing NELL1--INSC:  67%|██████▋   | 8/12 [00:00<00:00,  9.47it/s]
Processing SBF2--AC087379.1:  67%|██████▋   | 8/12 [00:00<00:00,  9.47it/s]
Processing SBF2--AC087379.1:  75%|███████▌  | 9/12 [00:00<00:00,  9.46it/s]
Processing SBF2--AC009869.1:  75%|███████▌  | 9/12 [00:00<00:00,  9.46it/s]
Processing SBF2--AC009869.1:  83%|████████▎ | 10/12 [00:01<00:00,  9.47it/s]
Processing BMS1P23--AFF3:  83%|████████▎ | 10/12 [00:01<00:00,  9.47it/s]   
Processing BMS1P23--AFF3:  92%|█████████▏| 11/12 [00:01<00:00,  9.49it/s]
Processing AL845331.2--AFF3:  92%|█████████▏| 11/12 [00:01<00:00,  9.49it/s]
Processing AL845331.2--AFF3: 100%|██████████| 12/12 [00:01<00:00,  9.49it/s]
Processing AL845331.2--AFF3: 100%|██████████| 12/12 [00:01<00:00,  9.45it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory