Using GATK jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar
Running:
java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xmx60620M -XX:-UsePerfData -XX:ParallelGCThreads=2 -jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar MarkDuplicates --INPUT 659_bNS-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam --OUTPUT 659_bNS-T1-TRNA-1_A23MVY2LT4_2.md.bam --METRICS_FILE 659_bNS-T1-TRNA-1_A23MVY2LT4_2.md.bam.metrics --TMP_DIR . --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa -REMOVE_DUPLICATES false -VALIDATION_STRINGENCY LENIENT
08:54:37.134 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar!/com/intel/gkl/native/libgkl_compression.so
[Mon Jun 08 08:54:37 GMT 2026] MarkDuplicates --INPUT 659_bNS-T1-TRNA-1_A23MVY2LT4_2.Aligned.sortedByCoord.out.bam --OUTPUT 659_bNS-T1-TRNA-1_A23MVY2LT4_2.md.bam --METRICS_FILE 659_bNS-T1-TRNA-1_A23MVY2LT4_2.md.bam.metrics --REMOVE_DUPLICATES false --TMP_DIR . --VALIDATION_STRINGENCY LENIENT --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --FLOW_MODE false --FLOW_QUALITY_SUM_STRATEGY false --USE_END_IN_UNPAIRED_READS false --USE_UNPAIRED_CLIPPED_END false --UNPAIRED_END_UNCERTAINTY 0 --FLOW_SKIP_FIRST_N_FLOWS 0 --FLOW_Q_IS_KNOWN_END false --FLOW_EFFECTIVE_QUALITY_THRESHOLD 15 --ADD_PG_TAG_TO_READS true --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX <optimized capture of last three ':' separated fields as numeric values> --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Mon Jun 08 08:54:37 GMT 2026] Executing as ?@nf-4a36c990d2a93769dd882acf34e02dfa-e9fe2-cqwqk on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 17.0.3-internal+0-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:4.4.0.0
INFO 2026-06-08 08:54:37 MarkDuplicates Start of doWork freeMemory: 105827184; totalMemory: 134217728; maxMemory: 63585648640
INFO 2026-06-08 08:54:37 MarkDuplicates Reading input file and constructing read end information.
INFO 2026-06-08 08:54:37 MarkDuplicates Will retain up to 230382784 data points before spilling to disk.
INFO 2026-06-08 08:54:42 MarkDuplicates Read 1,000,000 records. Elapsed time: 00:00:03s. Time for last 1,000,000: 3s. Last read position: chr1:1,342,109
INFO 2026-06-08 08:54:42 MarkDuplicates Tracking 4133 as yet unmatched pairs. 645 records in RAM.
INFO 2026-06-08 08:54:45 MarkDuplicates Read 2,000,000 records. Elapsed time: 00:00:06s. Time for last 1,000,000: 3s. Last read position: chr1:2,304,540
INFO 2026-06-08 08:54:45 MarkDuplicates Tracking 7724 as yet unmatched pairs. 630 records in RAM.
INFO 2026-06-08 08:54:47 MarkDuplicates Read 3,000,000 records. Elapsed time: 00:00:08s. Time for last 1,000,000: 2s. Last read position: chr1:7,962,869
INFO 2026-06-08 08:54:47 MarkDuplicates Tracking 12913 as yet unmatched pairs. 2564 records in RAM.
INFO 2026-06-08 08:54:50 MarkDuplicates Read 4,000,000 records. Elapsed time: 00:00:11s. Time for last 1,000,000: 2s. Last read position: chr1:10,129,436
INFO 2026-06-08 08:54:50 MarkDuplicates Tracking 13455 as yet unmatched pairs. 233 records in RAM.
INFO 2026-06-08 08:54:52 MarkDuplicates Read 5,000,000 records. Elapsed time: 00:00:13s. Time for last 1,000,000: 2s. Last read position: chr1:13,779,316
INFO 2026-06-08 08:54:52 MarkDuplicates Tracking 16449 as yet unmatched pairs. 210 records in RAM.
INFO 2026-06-08 08:54:54 MarkDuplicates Read 6,000,000 records. Elapsed time: 00:00:15s. Time for last 1,000,000: 2s. Last read position: chr1:17,422,273
INFO 2026-06-08 08:54:54 MarkDuplicates Tracking 19685 as yet unmatched pairs. 568 records in RAM.
INFO 2026-06-08 08:54:57 MarkDuplicates Read 7,000,000 records. Elapsed time: 00:00:18s. Time for last 1,000,000: 2s. Last read position: chr1:20,652,526
INFO 2026-06-08 08:54:57 MarkDuplicates Tracking 23585 as yet unmatched pairs. 1556 records in RAM.
INFO 2026-06-08 08:54:59 MarkDuplicates Read 8,000,000 records. Elapsed time: 00:00:20s. Time for last 1,000,000: 2s. Last read position: chr1:21,847,971
INFO 2026-06-08 08:54:59 MarkDuplicates Tracking 26636 as yet unmatched pairs. 1531 records in RAM.
INFO 2026-06-08 08:55:01 MarkDuplicates Read 9,000,000 records. Elapsed time: 00:00:22s. Time for last 1,000,000: 2s. Last read position: chr1:22,639,151
INFO 2026-06-08 08:55:01 MarkDuplicates Tracking 33261 as yet unmatched pairs. 5082 records in RAM.
INFO 2026-06-08 08:55:03 MarkDuplicates Read 10,000,000 records. Elapsed time: 00:00:24s. Time for last 1,000,000: 2s. Last read position: chr1:23,695,841
INFO 2026-06-08 08:55:03 MarkDuplicates Tracking 31242 as yet unmatched pairs. 152 records in RAM.
INFO 2026-06-08 08:55:06 MarkDuplicates Read 11,000,000 records. Elapsed time: 00:00:27s. Time for last 1,000,000: 3s. Last read position: chr1:26,766,489
INFO 2026-06-08 08:55:06 MarkDuplicates Tracking 34204 as yet unmatched pairs. 326 records in RAM.
INFO 2026-06-08 08:55:09 MarkDuplicates Read 12,000,000 records. Elapsed time: 00:00:30s. Time for last 1,000,000: 2s. Last read position: chr1:28,236,221
INFO 2026-06-08 08:55:09 MarkDuplicates Tracking 37904 as yet unmatched pairs. 735 records in RAM.
INFO 2026-06-08 08:55:11 MarkDuplicates Read 13,000,000 records. Elapsed time: 00:00:31s. Time for last 1,000,000: 1s. Last read position: chr1:31,680,095
INFO 2026-06-08 08:55:11 MarkDuplicates Tracking 40824 as yet unmatched pairs. 663 records in RAM.
INFO 2026-06-08 08:55:13 MarkDuplicates Read 14,000,000 records. Elapsed time: 00:00:34s. Time for last 1,000,000: 2s. Last read position: chr1:33,013,115
INFO 2026-06-08 08:55:13 MarkDuplicates Tracking 45194 as yet unmatched pairs. 2005 records in RAM.
INFO 2026-06-08 08:55:15 MarkDuplicates Read 15,000,000 records. Elapsed time: 00:00:36s. Time for last 1,000,000: 2s. Last read position: chr1:36,293,849
INFO 2026-06-08 08:55:15 MarkDuplicates Tracking 47078 as yet unmatched pairs. 806 records in RAM.
INFO 2026-06-08 08:55:17 MarkDuplicates Read 16,000,000 records. Elapsed time: 00:00:38s. Time for last 1,000,000: 1s. Last read position: chr1:39,357,666
INFO 2026-06-08 08:55:17 MarkDuplicates Tracking 50381 as yet unmatched pairs. 1309 records in RAM.
INFO 2026-06-08 08:55:19 MarkDuplicates Read 17,000,000 records. Elapsed time: 00:00:40s. Time for last 1,000,000: 1s. Last read position: chr1:40,092,044
INFO 2026-06-08 08:55:19 MarkDuplicates Tracking 52547 as yet unmatched pairs. 723 records in RAM.
INFO 2026-06-08 08:55:21 MarkDuplicates Read 18,000,000 records. Elapsed time: 00:00:42s. Time for last 1,000,000: 2s. Last read position: chr1:43,588,826
INFO 2026-06-08 08:55:21 MarkDuplicates Tracking 55916 as yet unmatched pairs. 1059 records in RAM.
INFO 2026-06-08 08:55:23 MarkDuplicates Read 19,000,000 records. Elapsed time: 00:00:44s. Time for last 1,000,000: 1s. Last read position: chr1:45,566,894
INFO 2026-06-08 08:55:23 MarkDuplicates Tracking 59793 as yet unmatched pairs. 2061 records in RAM.
INFO 2026-06-08 08:55:25 MarkDuplicates Read 20,000,000 records. Elapsed time: 00:00:46s. Time for last 1,000,000: 1s. Last read position: chr1:52,027,320
INFO 2026-06-08 08:55:25 MarkDuplicates Tracking 61276 as yet unmatched pairs. 720 records in RAM.
INFO 2026-06-08 08:55:26 MarkDuplicates Read 21,000,000 records. Elapsed time: 00:00:47s. Time for last 1,000,000: 1s. Last read position: chr1:58,782,239
INFO 2026-06-08 08:55:26 MarkDuplicates Tracking 66646 as yet unmatched pairs. 3066 records in RAM.
INFO 2026-06-08 08:55:28 MarkDuplicates Read 22,000,000 records. Elapsed time: 00:00:49s. Time for last 1,000,000: 1s. Last read position: chr1:70,296,136
INFO 2026-06-08 08:55:28 MarkDuplicates Tracking 66750 as yet unmatched pairs. 307 records in RAM.
INFO 2026-06-08 08:55:30 MarkDuplicates Read 23,000,000 records. Elapsed time: 00:00:51s. Time for last 1,000,000: 1s. Last read position: chr1:87,340,133
INFO 2026-06-08 08:55:30 MarkDuplicates Tracking 69606 as yet unmatched pairs. 261 records in RAM.
INFO 2026-06-08 08:55:32 MarkDuplicates Read 24,000,000 records. Elapsed time: 00:00:53s. Time for last 1,000,000: 1s. Last read position: chr1:97,098,505
INFO 2026-06-08 08:55:32 MarkDuplicates Tracking 72130 as yet unmatched pairs. 245 records in RAM.
INFO 2026-06-08 08:55:34 MarkDuplicates Read 25,000,000 records. Elapsed time: 00:00:55s. Time for last 1,000,000: 1s. Last read position: chr1:109,397,747
INFO 2026-06-08 08:55:34 MarkDuplicates Tracking 74880 as yet unmatched pairs. 286 records in RAM.
INFO 2026-06-08 08:55:36 MarkDuplicates Read 26,000,000 records. Elapsed time: 00:00:57s. Time for last 1,000,000: 2s. Last read position: chr1:113,390,973
INFO 2026-06-08 08:55:36 MarkDuplicates Tracking 78093 as yet unmatched pairs. 609 records in RAM.
INFO 2026-06-08 08:55:39 MarkDuplicates Read 27,000,000 records. Elapsed time: 00:01:00s. Time for last 1,000,000: 2s. Last read position: chr1:114,737,990
INFO 2026-06-08 08:55:39 MarkDuplicates Tracking 83031 as yet unmatched pairs. 2917 records in RAM.
INFO 2026-06-08 08:55:41 MarkDuplicates Read 28,000,000 records. Elapsed time: 00:01:01s. Time for last 1,000,000: 1s. Last read position: chr1:119,922,398
INFO 2026-06-08 08:55:41 MarkDuplicates Tracking 84980 as yet unmatched pairs. 2284 records in RAM.
INFO 2026-06-08 08:55:42 MarkDuplicates Read 29,000,000 records. Elapsed time: 00:01:03s. Time for last 1,000,000: 1s. Last read position: chr1:143,476,565
INFO 2026-06-08 08:55:42 MarkDuplicates Tracking 84988 as yet unmatched pairs. 63 records in RAM.
INFO 2026-06-08 08:55:44 MarkDuplicates Read 30,000,000 records. Elapsed time: 00:01:05s. Time for last 1,000,000: 1s. Last read position: chr1:146,164,854
INFO 2026-06-08 08:55:44 MarkDuplicates Tracking 87856 as yet unmatched pairs. 1069 records in RAM.
INFO 2026-06-08 08:55:46 MarkDuplicates Read 31,000,000 records. Elapsed time: 00:01:07s. Time for last 1,000,000: 2s. Last read position: chr1:148,969,013
INFO 2026-06-08 08:55:46 MarkDuplicates Tracking 88795 as yet unmatched pairs. 344 records in RAM.
INFO 2026-06-08 08:55:48 MarkDuplicates Read 32,000,000 records. Elapsed time: 00:01:09s. Time for last 1,000,000: 1s. Last read position: chr1:150,159,445
INFO 2026-06-08 08:55:48 MarkDuplicates Tracking 90813 as yet unmatched pairs. 337 records in RAM.
INFO 2026-06-08 08:55:50 MarkDuplicates Read 33,000,000 records. Elapsed time: 00:01:11s. Time for last 1,000,000: 2s. Last read position: chr1:150,796,724
INFO 2026-06-08 08:55:50 MarkDuplicates Tracking 94744 as yet unmatched pairs. 1424 records in RAM.
INFO 2026-06-08 08:55:52 MarkDuplicates Read 34,000,000 records. Elapsed time: 00:01:13s. Time for last 1,000,000: 2s. Last read position: chr1:151,408,692
INFO 2026-06-08 08:55:52 MarkDuplicates Tracking 96424 as yet unmatched pairs. 224 records in RAM.
INFO 2026-06-08 08:55:55 MarkDuplicates Read 35,000,000 records. Elapsed time: 00:01:16s. Time for last 1,000,000: 2s. Last read position: chr1:153,728,549
INFO 2026-06-08 08:55:55 MarkDuplicates Tracking 99350 as yet unmatched pairs. 557 records in RAM.
INFO 2026-06-08 08:55:57 MarkDuplicates Read 36,000,000 records. Elapsed time: 00:01:18s. Time for last 1,000,000: 1s. Last read position: chr1:154,182,987
INFO 2026-06-08 08:55:57 MarkDuplicates Tracking 103916 as yet unmatched pairs. 2338 records in RAM.
INFO 2026-06-08 08:55:58 MarkDuplicates Read 37,000,000 records. Elapsed time: 00:01:19s. Time for last 1,000,000: 1s. Last read position: chr1:154,948,234
INFO 2026-06-08 08:55:58 MarkDuplicates Tracking 105238 as yet unmatched pairs. 1013 records in RAM.
INFO 2026-06-08 08:56:00 MarkDuplicates Read 38,000,000 records. Elapsed time: 00:01:21s. Time for last 1,000,000: 1s. Last read position: chr1:155,187,275
INFO 2026-06-08 08:56:00 MarkDuplicates Tracking 118043 as yet unmatched pairs. 10799 records in RAM.
INFO 2026-06-08 08:56:02 MarkDuplicates Read 39,000,000 records. Elapsed time: 00:01:23s. Time for last 1,000,000: 1s. Last read position: chr1:155,191,284
INFO 2026-06-08 08:56:02 MarkDuplicates Tracking 110906 as yet unmatched pairs. 1775 records in RAM.
INFO 2026-06-08 08:56:04 MarkDuplicates Read 40,000,000 records. Elapsed time: 00:01:25s. Time for last 1,000,000: 2s. Last read position: chr1:155,659,663
INFO 2026-06-08 08:56:04 MarkDuplicates Tracking 112579 as yet unmatched pairs. 1051 records in RAM.
INFO 2026-06-08 08:56:06 MarkDuplicates Read 41,000,000 records. Elapsed time: 00:01:27s. Time for last 1,000,000: 1s. Last read position: chr1:156,134,402
INFO 2026-06-08 08:56:06 MarkDuplicates Tracking 120855 as yet unmatched pairs. 6122 records in RAM.
INFO 2026-06-08 08:56:07 MarkDuplicates Read 42,000,000 records. Elapsed time: 00:01:28s. Time for last 1,000,000: 1s. Last read position: chr1:156,317,498
INFO 2026-06-08 08:56:07 MarkDuplicates Tracking 118867 as yet unmatched pairs. 647 records in RAM.
INFO 2026-06-08 08:56:09 MarkDuplicates Read 43,000,000 records. Elapsed time: 00:01:30s. Time for last 1,000,000: 1s. Last read position: chr1:159,206,362
INFO 2026-06-08 08:56:09 MarkDuplicates Tracking 121090 as yet unmatched pairs. 97 records in RAM.
INFO 2026-06-08 08:56:11 MarkDuplicates Read 44,000,000 records. Elapsed time: 00:01:31s. Time for last 1,000,000: 1s. Last read position: chr1:161,049,093
INFO 2026-06-08 08:56:11 MarkDuplicates Tracking 124181 as yet unmatched pairs. 287 records in RAM.
INFO 2026-06-08 08:56:12 MarkDuplicates Read 45,000,000 records. Elapsed time: 00:01:33s. Time for last 1,000,000: 1s. Last read position: chr1:161,998,035
INFO 2026-06-08 08:56:12 MarkDuplicates Tracking 127207 as yet unmatched pairs. 664 records in RAM.
INFO 2026-06-08 08:56:14 MarkDuplicates Read 46,000,000 records. Elapsed time: 00:01:35s. Time for last 1,000,000: 2s. Last read position: chr1:169,130,042
INFO 2026-06-08 08:56:14 MarkDuplicates Tracking 136533 as yet unmatched pairs. 7102 records in RAM.
INFO 2026-06-08 08:56:16 MarkDuplicates Read 47,000,000 records. Elapsed time: 00:01:37s. Time for last 1,000,000: 1s. Last read position: chr1:173,983,502
INFO 2026-06-08 08:56:16 MarkDuplicates Tracking 132207 as yet unmatched pairs. 251 records in RAM.
INFO 2026-06-08 08:56:17 MarkDuplicates Read 48,000,000 records. Elapsed time: 00:01:38s. Time for last 1,000,000: 1s. Last read position: chr1:180,908,277
INFO 2026-06-08 08:56:17 MarkDuplicates Tracking 134886 as yet unmatched pairs. 231 records in RAM.
INFO 2026-06-08 08:56:19 MarkDuplicates Read 49,000,000 records. Elapsed time: 00:01:40s. Time for last 1,000,000: 1s. Last read position: chr1:183,570,823
INFO 2026-06-08 08:56:19 MarkDuplicates Tracking 138083 as yet unmatched pairs. 357 records in RAM.
INFO 2026-06-08 08:56:21 MarkDuplicates Read 50,000,000 records. Elapsed time: 00:01:42s. Time for last 1,000,000: 1s. Last read position: chr1:186,347,355
INFO 2026-06-08 08:56:21 MarkDuplicates Tracking 142054 as yet unmatched pairs. 1837 records in RAM.
INFO 2026-06-08 08:56:22 MarkDuplicates Read 51,000,000 records. Elapsed time: 00:01:43s. Time for last 1,000,000: 1s. Last read position: chr1:200,898,451
INFO 2026-06-08 08:56:22 MarkDuplicates Tracking 143351 as yet unmatched pairs. 597 records in RAM.
INFO 2026-06-08 08:56:25 MarkDuplicates Read 52,000,000 records. Elapsed time: 00:01:46s. Time for last 1,000,000: 2s. Last read position: chr1:202,945,040
INFO 2026-06-08 08:56:25 MarkDuplicates Tracking 147757 as yet unmatched pairs. 1920 records in RAM.
INFO 2026-06-08 08:56:27 MarkDuplicates Read 53,000,000 records. Elapsed time: 00:01:48s. Time for last 1,000,000: 2s. Last read position: chr1:204,257,662
INFO 2026-06-08 08:56:27 MarkDuplicates Tracking 148848 as yet unmatched pairs. 420 records in RAM.
INFO 2026-06-08 08:56:29 MarkDuplicates Read 54,000,000 records. Elapsed time: 00:01:50s. Time for last 1,000,000: 1s. Last read position: chr1:206,934,437
INFO 2026-06-08 08:56:29 MarkDuplicates Tracking 153155 as yet unmatched pairs. 2044 records in RAM.
INFO 2026-06-08 08:56:30 MarkDuplicates Read 55,000,000 records. Elapsed time: 00:01:51s. Time for last 1,000,000: 1s. Last read position: chr1:207,337,294
INFO 2026-06-08 08:56:30 MarkDuplicates Tracking 161558 as yet unmatched pairs. 7599 records in RAM.
INFO 2026-06-08 08:56:32 MarkDuplicates Read 56,000,000 records. Elapsed time: 00:01:53s. Time for last 1,000,000: 1s. Last read position: chr1:211,353,297
INFO 2026-06-08 08:56:32 MarkDuplicates Tracking 157475 as yet unmatched pairs. 478 records in RAM.
INFO 2026-06-08 08:56:34 MarkDuplicates Read 57,000,000 records. Elapsed time: 00:01:55s. Time for last 1,000,000: 1s. Last read position: chr1:222,665,531
INFO 2026-06-08 08:56:34 MarkDuplicates Tracking 160288 as yet unmatched pairs. 550 records in RAM.
INFO 2026-06-08 08:56:36 MarkDuplicates Read 58,000,000 records. Elapsed time: 00:01:57s. Time for last 1,000,000: 2s. Last read position: chr1:225,500,991
INFO 2026-06-08 08:56:36 MarkDuplicates Tracking 163920 as yet unmatched pairs. 1625 records in RAM.
INFO 2026-06-08 08:56:38 MarkDuplicates Read 59,000,000 records. Elapsed time: 00:01:59s. Time for last 1,000,000: 1s. Last read position: chr1:226,385,503
INFO 2026-06-08 08:56:38 MarkDuplicates Tracking 165552 as yet unmatched pairs. 612 records in RAM.
INFO 2026-06-08 08:56:40 MarkDuplicates Read 60,000,000 records. Elapsed time: 00:02:01s. Time for last 1,000,000: 2s. Last read position: chr1:228,402,097
INFO 2026-06-08 08:56:40 MarkDuplicates Tracking 168716 as yet unmatched pairs. 272 records in RAM.
INFO 2026-06-08 08:56:42 MarkDuplicates Read 61,000,000 records. Elapsed time: 00:02:03s. Time for last 1,000,000: 1s. Last read position: chr1:234,608,750
INFO 2026-06-08 08:56:42 MarkDuplicates Tracking 172504 as yet unmatched pairs. 438 records in RAM.
INFO 2026-06-08 08:56:44 MarkDuplicates Read 62,000,000 records. Elapsed time: 00:02:04s. Time for last 1,000,000: 1s. Last read position: chr1:244,054,164
INFO 2026-06-08 08:56:44 MarkDuplicates Tracking 175671 as yet unmatched pairs. 703 records in RAM.
INFO 2026-06-08 08:56:46 MarkDuplicates Read 63,000,000 records. Elapsed time: 00:02:07s. Time for last 1,000,000: 2s. Last read position: chr1:248,856,408
INFO 2026-06-08 08:56:46 MarkDuplicates Tracking 178349 as yet unmatched pairs. 332 records in RAM.
INFO 2026-06-08 08:56:49 MarkDuplicates Read 64,000,000 records. Elapsed time: 00:02:10s. Time for last 1,000,000: 3s. Last read position: chr2:15,599,668
INFO 2026-06-08 08:56:49 MarkDuplicates Tracking 180953 as yet unmatched pairs. 180087 records in RAM.
INFO 2026-06-08 08:56:52 MarkDuplicates Read 65,000,000 records. Elapsed time: 00:02:13s. Time for last 1,000,000: 2s. Last read position: chr2:24,741,845
INFO 2026-06-08 08:56:52 MarkDuplicates Tracking 184262 as yet unmatched pairs. 183382 records in RAM.
INFO 2026-06-08 08:56:53 MarkDuplicates Read 66,000,000 records. Elapsed time: 00:02:14s. Time for last 1,000,000: 1s. Last read position: chr2:27,655,518
INFO 2026-06-08 08:56:53 MarkDuplicates Tracking 186967 as yet unmatched pairs. 186075 records in RAM.
INFO 2026-06-08 08:56:55 MarkDuplicates Read 67,000,000 records. Elapsed time: 00:02:16s. Time for last 1,000,000: 1s. Last read position: chr2:32,529,675
INFO 2026-06-08 08:56:55 MarkDuplicates Tracking 189725 as yet unmatched pairs. 188823 records in RAM.
INFO 2026-06-08 08:56:57 MarkDuplicates Read 68,000,000 records. Elapsed time: 00:02:18s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,264
INFO 2026-06-08 08:56:57 MarkDuplicates Tracking 290284 as yet unmatched pairs. 182786 records in RAM.
INFO 2026-06-08 08:56:59 MarkDuplicates Read 69,000,000 records. Elapsed time: 00:02:20s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,264
INFO 2026-06-08 08:56:59 MarkDuplicates Tracking 979612 as yet unmatched pairs. 142766 records in RAM.
INFO 2026-06-08 08:57:01 MarkDuplicates Read 70,000,000 records. Elapsed time: 00:02:22s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,404
INFO 2026-06-08 08:57:01 MarkDuplicates Tracking 1487111 as yet unmatched pairs. 113564 records in RAM.
INFO 2026-06-08 08:57:02 MarkDuplicates Read 71,000,000 records. Elapsed time: 00:02:23s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,406
INFO 2026-06-08 08:57:02 MarkDuplicates Tracking 1497471 as yet unmatched pairs. 113079 records in RAM.
INFO 2026-06-08 08:57:04 MarkDuplicates Read 72,000,000 records. Elapsed time: 00:02:24s. Time for last 1,000,000: 1s. Last read position: chr2:33,300,505
INFO 2026-06-08 08:57:04 MarkDuplicates Tracking 1588206 as yet unmatched pairs. 108581 records in RAM.
INFO 2026-06-08 08:57:05 MarkDuplicates Read 73,000,000 records. Elapsed time: 00:02:26s. Time for last 1,000,000: 1s. Last read position: chr2:42,286,271
INFO 2026-06-08 08:57:05 MarkDuplicates Tracking 1587890 as yet unmatched pairs. 108253 records in RAM.
INFO 2026-06-08 08:57:07 MarkDuplicates Read 74,000,000 records. Elapsed time: 00:02:28s. Time for last 1,000,000: 1s. Last read position: chr2:46,360,917
INFO 2026-06-08 08:57:07 MarkDuplicates Tracking 1583892 as yet unmatched pairs. 104249 records in RAM.
INFO 2026-06-08 08:57:09 MarkDuplicates Read 75,000,000 records. Elapsed time: 00:02:30s. Time for last 1,000,000: 2s. Last read position: chr2:54,626,171
INFO 2026-06-08 08:57:09 MarkDuplicates Tracking 1580254 as yet unmatched pairs. 100582 records in RAM.
INFO 2026-06-08 08:57:10 MarkDuplicates Read 76,000,000 records. Elapsed time: 00:02:31s. Time for last 1,000,000: 1s. Last read position: chr2:60,768,499
INFO 2026-06-08 08:57:10 MarkDuplicates Tracking 1576474 as yet unmatched pairs. 96793 records in RAM.
INFO 2026-06-08 08:57:12 MarkDuplicates Read 77,000,000 records. Elapsed time: 00:02:33s. Time for last 1,000,000: 1s. Last read position: chr2:68,822,623
INFO 2026-06-08 08:57:12 MarkDuplicates Tracking 1573921 as yet unmatched pairs. 94215 records in RAM.
INFO 2026-06-08 08:57:14 MarkDuplicates Read 78,000,000 records. Elapsed time: 00:02:35s. Time for last 1,000,000: 1s. Last read position: chr2:73,249,162
INFO 2026-06-08 08:57:14 MarkDuplicates Tracking 1571364 as yet unmatched pairs. 91649 records in RAM.
INFO 2026-06-08 08:57:16 MarkDuplicates Read 79,000,000 records. Elapsed time: 00:02:37s. Time for last 1,000,000: 2s. Last read position: chr2:84,971,417
INFO 2026-06-08 08:57:16 MarkDuplicates Tracking 1568370 as yet unmatched pairs. 88628 records in RAM.
INFO 2026-06-08 08:57:18 MarkDuplicates Read 80,000,000 records. Elapsed time: 00:02:39s. Time for last 1,000,000: 1s. Last read position: chr2:85,662,084
INFO 2026-06-08 08:57:18 MarkDuplicates Tracking 1588348 as yet unmatched pairs. 108580 records in RAM.
INFO 2026-06-08 08:57:20 MarkDuplicates Read 81,000,000 records. Elapsed time: 00:02:41s. Time for last 1,000,000: 1s. Last read position: chr2:85,665,740
INFO 2026-06-08 08:57:20 MarkDuplicates Tracking 1580204 as yet unmatched pairs. 100417 records in RAM.
INFO 2026-06-08 08:57:22 MarkDuplicates Read 82,000,000 records. Elapsed time: 00:02:42s. Time for last 1,000,000: 1s. Last read position: chr2:87,782,995
INFO 2026-06-08 08:57:22 MarkDuplicates Tracking 1558347 as yet unmatched pairs. 78549 records in RAM.
INFO 2026-06-08 08:57:24 MarkDuplicates Read 83,000,000 records. Elapsed time: 00:02:44s. Time for last 1,000,000: 1s. Last read position: chr2:97,247,480
INFO 2026-06-08 08:57:24 MarkDuplicates Tracking 1555610 as yet unmatched pairs. 75796 records in RAM.
INFO 2026-06-08 08:57:25 MarkDuplicates Read 84,000,000 records. Elapsed time: 00:02:46s. Time for last 1,000,000: 1s. Last read position: chr2:105,386,397
INFO 2026-06-08 08:57:25 MarkDuplicates Tracking 1553904 as yet unmatched pairs. 74071 records in RAM.
INFO 2026-06-08 08:57:27 MarkDuplicates Read 85,000,000 records. Elapsed time: 00:02:48s. Time for last 1,000,000: 1s. Last read position: chr2:109,824,281
INFO 2026-06-08 08:57:27 MarkDuplicates Tracking 1550787 as yet unmatched pairs. 70951 records in RAM.
INFO 2026-06-08 08:57:28 MarkDuplicates Read 86,000,000 records. Elapsed time: 00:02:49s. Time for last 1,000,000: 1s. Last read position: chr2:113,595,443
INFO 2026-06-08 08:57:28 MarkDuplicates Tracking 1549011 as yet unmatched pairs. 69169 records in RAM.
INFO 2026-06-08 08:57:30 MarkDuplicates Read 87,000,000 records. Elapsed time: 00:02:51s. Time for last 1,000,000: 1s. Last read position: chr2:128,097,550
INFO 2026-06-08 08:57:30 MarkDuplicates Tracking 1546630 as yet unmatched pairs. 66772 records in RAM.
INFO 2026-06-08 08:57:32 MarkDuplicates Read 88,000,000 records. Elapsed time: 00:02:53s. Time for last 1,000,000: 1s. Last read position: chr2:143,768,169
INFO 2026-06-08 08:57:32 MarkDuplicates Tracking 1543318 as yet unmatched pairs. 63435 records in RAM.
INFO 2026-06-08 08:57:34 MarkDuplicates Read 89,000,000 records. Elapsed time: 00:02:54s. Time for last 1,000,000: 1s. Last read position: chr2:160,126,584
INFO 2026-06-08 08:57:34 MarkDuplicates Tracking 1541222 as yet unmatched pairs. 61312 records in RAM.
INFO 2026-06-08 08:57:35 MarkDuplicates Read 90,000,000 records. Elapsed time: 00:02:56s. Time for last 1,000,000: 1s. Last read position: chr2:171,517,626
INFO 2026-06-08 08:57:35 MarkDuplicates Tracking 1538108 as yet unmatched pairs. 58187 records in RAM.
INFO 2026-06-08 08:57:37 MarkDuplicates Read 91,000,000 records. Elapsed time: 00:02:58s. Time for last 1,000,000: 1s. Last read position: chr2:178,559,545
INFO 2026-06-08 08:57:37 MarkDuplicates Tracking 1535590 as yet unmatched pairs. 55655 records in RAM.
INFO 2026-06-08 08:57:38 MarkDuplicates Read 92,000,000 records. Elapsed time: 00:02:59s. Time for last 1,000,000: 1s. Last read position: chr2:188,991,496
INFO 2026-06-08 08:57:38 MarkDuplicates Tracking 1535171 as yet unmatched pairs. 55203 records in RAM.
INFO 2026-06-08 08:57:41 MarkDuplicates Read 93,000,000 records. Elapsed time: 00:03:02s. Time for last 1,000,000: 2s. Last read position: chr2:189,064,563
INFO 2026-06-08 08:57:41 MarkDuplicates Tracking 1531223 as yet unmatched pairs. 51249 records in RAM.
INFO 2026-06-08 08:57:43 MarkDuplicates Read 94,000,000 records. Elapsed time: 00:03:04s. Time for last 1,000,000: 1s. Last read position: chr2:191,846,681
INFO 2026-06-08 08:57:43 MarkDuplicates Tracking 1529721 as yet unmatched pairs. 49732 records in RAM.
INFO 2026-06-08 08:57:45 MarkDuplicates Read 95,000,000 records. Elapsed time: 00:03:05s. Time for last 1,000,000: 1s. Last read position: chr2:201,284,995
INFO 2026-06-08 08:57:45 MarkDuplicates Tracking 1524073 as yet unmatched pairs. 44074 records in RAM.
INFO 2026-06-08 08:57:47 MarkDuplicates Read 96,000,000 records. Elapsed time: 00:03:07s. Time for last 1,000,000: 2s. Last read position: chr2:207,582,017
INFO 2026-06-08 08:57:47 MarkDuplicates Tracking 1521801 as yet unmatched pairs. 41790 records in RAM.
INFO 2026-06-08 08:57:48 MarkDuplicates Read 97,000,000 records. Elapsed time: 00:03:09s. Time for last 1,000,000: 1s. Last read position: chr2:215,365,587
INFO 2026-06-08 08:57:48 MarkDuplicates Tracking 1536329 as yet unmatched pairs. 56315 records in RAM.
INFO 2026-06-08 08:57:50 MarkDuplicates Read 98,000,000 records. Elapsed time: 00:03:11s. Time for last 1,000,000: 1s. Last read position: chr2:215,372,269
INFO 2026-06-08 08:57:50 MarkDuplicates Tracking 1540812 as yet unmatched pairs. 60779 records in RAM.
INFO 2026-06-08 08:57:52 MarkDuplicates Read 99,000,000 records. Elapsed time: 00:03:13s. Time for last 1,000,000: 2s. Last read position: chr2:215,378,205
INFO 2026-06-08 08:57:52 MarkDuplicates Tracking 1534375 as yet unmatched pairs. 54335 records in RAM.
INFO 2026-06-08 08:57:54 MarkDuplicates Read 100,000,000 records. Elapsed time: 00:03:15s. Time for last 1,000,000: 1s. Last read position: chr2:215,386,689
INFO 2026-06-08 08:57:54 MarkDuplicates Tracking 1524880 as yet unmatched pairs. 44831 records in RAM.
INFO 2026-06-08 08:57:56 MarkDuplicates Read 101,000,000 records. Elapsed time: 00:03:17s. Time for last 1,000,000: 2s. Last read position: chr2:215,397,805
INFO 2026-06-08 08:57:56 MarkDuplicates Tracking 1513712 as yet unmatched pairs. 33650 records in RAM.
INFO 2026-06-08 08:57:58 MarkDuplicates Read 102,000,000 records. Elapsed time: 00:03:19s. Time for last 1,000,000: 1s. Last read position: chr2:215,408,317
INFO 2026-06-08 08:57:58 MarkDuplicates Tracking 1526447 as yet unmatched pairs. 46381 records in RAM.
INFO 2026-06-08 08:58:00 MarkDuplicates Read 103,000,000 records. Elapsed time: 00:03:21s. Time for last 1,000,000: 2s. Last read position: chr2:215,423,350
INFO 2026-06-08 08:58:00 MarkDuplicates Tracking 1509610 as yet unmatched pairs. 29519 records in RAM.
INFO 2026-06-08 08:58:02 MarkDuplicates Read 104,000,000 records. Elapsed time: 00:03:23s. Time for last 1,000,000: 1s. Last read position: chr2:215,434,702
INFO 2026-06-08 08:58:02 MarkDuplicates Tracking 1513814 as yet unmatched pairs. 33714 records in RAM.
INFO 2026-06-08 08:58:04 MarkDuplicates Read 105,000,000 records. Elapsed time: 00:03:25s. Time for last 1,000,000: 2s. Last read position: chr2:217,847,563
INFO 2026-06-08 08:58:04 MarkDuplicates Tracking 1498691 as yet unmatched pairs. 18577 records in RAM.
INFO 2026-06-08 08:58:06 MarkDuplicates Read 106,000,000 records. Elapsed time: 00:03:27s. Time for last 1,000,000: 1s. Last read position: chr2:219,248,415
INFO 2026-06-08 08:58:06 MarkDuplicates Tracking 1494938 as yet unmatched pairs. 14806 records in RAM.
INFO 2026-06-08 08:58:08 MarkDuplicates Read 107,000,000 records. Elapsed time: 00:03:29s. Time for last 1,000,000: 1s. Last read position: chr2:229,778,528
INFO 2026-06-08 08:58:08 MarkDuplicates Tracking 1492194 as yet unmatched pairs. 12036 records in RAM.
INFO 2026-06-08 08:58:09 MarkDuplicates Read 108,000,000 records. Elapsed time: 00:03:30s. Time for last 1,000,000: 1s. Last read position: chr2:233,171,077
INFO 2026-06-08 08:58:09 MarkDuplicates Tracking 1488940 as yet unmatched pairs. 8768 records in RAM.
INFO 2026-06-08 08:58:12 MarkDuplicates Read 109,000,000 records. Elapsed time: 00:03:32s. Time for last 1,000,000: 2s. Last read position: chr2:237,371,794
INFO 2026-06-08 08:58:12 MarkDuplicates Tracking 1491219 as yet unmatched pairs. 11032 records in RAM.
INFO 2026-06-08 08:58:13 MarkDuplicates Read 110,000,000 records. Elapsed time: 00:03:34s. Time for last 1,000,000: 1s. Last read position: chr2:240,573,175
INFO 2026-06-08 08:58:13 MarkDuplicates Tracking 1483611 as yet unmatched pairs. 3406 records in RAM.
INFO 2026-06-08 08:58:16 MarkDuplicates Read 111,000,000 records. Elapsed time: 00:03:37s. Time for last 1,000,000: 2s. Last read position: chr3:4,627,854
INFO 2026-06-08 08:58:16 MarkDuplicates Tracking 1480318 as yet unmatched pairs. 81333 records in RAM.
INFO 2026-06-08 08:58:18 MarkDuplicates Read 112,000,000 records. Elapsed time: 00:03:39s. Time for last 1,000,000: 1s. Last read position: chr3:10,305,057
INFO 2026-06-08 08:58:18 MarkDuplicates Tracking 1477136 as yet unmatched pairs. 78142 records in RAM.
INFO 2026-06-08 08:58:19 MarkDuplicates Read 113,000,000 records. Elapsed time: 00:03:40s. Time for last 1,000,000: 1s. Last read position: chr3:14,447,788
INFO 2026-06-08 08:58:19 MarkDuplicates Tracking 1474772 as yet unmatched pairs. 75759 records in RAM.
INFO 2026-06-08 08:58:21 MarkDuplicates Read 114,000,000 records. Elapsed time: 00:03:42s. Time for last 1,000,000: 1s. Last read position: chr3:30,671,930
INFO 2026-06-08 08:58:21 MarkDuplicates Tracking 1472677 as yet unmatched pairs. 73654 records in RAM.
INFO 2026-06-08 08:58:23 MarkDuplicates Read 115,000,000 records. Elapsed time: 00:03:44s. Time for last 1,000,000: 1s. Last read position: chr3:38,100,414
INFO 2026-06-08 08:58:23 MarkDuplicates Tracking 1468368 as yet unmatched pairs. 69331 records in RAM.
INFO 2026-06-08 08:58:25 MarkDuplicates Read 116,000,000 records. Elapsed time: 00:03:46s. Time for last 1,000,000: 2s. Last read position: chr3:41,224,563
INFO 2026-06-08 08:58:25 MarkDuplicates Tracking 1474534 as yet unmatched pairs. 75482 records in RAM.
INFO 2026-06-08 08:58:27 MarkDuplicates Read 117,000,000 records. Elapsed time: 00:03:48s. Time for last 1,000,000: 1s. Last read position: chr3:45,946,125
INFO 2026-06-08 08:58:27 MarkDuplicates Tracking 1463274 as yet unmatched pairs. 64209 records in RAM.
INFO 2026-06-08 08:58:28 MarkDuplicates Read 118,000,000 records. Elapsed time: 00:03:49s. Time for last 1,000,000: 1s. Last read position: chr3:47,917,095
INFO 2026-06-08 08:58:28 MarkDuplicates Tracking 1461295 as yet unmatched pairs. 62220 records in RAM.
INFO 2026-06-08 08:58:30 MarkDuplicates Read 119,000,000 records. Elapsed time: 00:03:51s. Time for last 1,000,000: 1s. Last read position: chr3:49,025,257
INFO 2026-06-08 08:58:30 MarkDuplicates Tracking 1457896 as yet unmatched pairs. 58818 records in RAM.
INFO 2026-06-08 08:58:32 MarkDuplicates Read 120,000,000 records. Elapsed time: 00:03:53s. Time for last 1,000,000: 1s. Last read position: chr3:49,426,279
INFO 2026-06-08 08:58:32 MarkDuplicates Tracking 1453749 as yet unmatched pairs. 54666 records in RAM.
INFO 2026-06-08 08:58:34 MarkDuplicates Read 121,000,000 records. Elapsed time: 00:03:55s. Time for last 1,000,000: 1s. Last read position: chr3:50,365,059
INFO 2026-06-08 08:58:34 MarkDuplicates Tracking 1450616 as yet unmatched pairs. 51526 records in RAM.
INFO 2026-06-08 08:58:36 MarkDuplicates Read 122,000,000 records. Elapsed time: 00:03:56s. Time for last 1,000,000: 1s. Last read position: chr3:52,487,556
INFO 2026-06-08 08:58:36 MarkDuplicates Tracking 1448328 as yet unmatched pairs. 49228 records in RAM.
INFO 2026-06-08 08:58:37 MarkDuplicates Read 123,000,000 records. Elapsed time: 00:03:58s. Time for last 1,000,000: 1s. Last read position: chr3:56,745,388
INFO 2026-06-08 08:58:37 MarkDuplicates Tracking 1444773 as yet unmatched pairs. 45664 records in RAM.
INFO 2026-06-08 08:58:39 MarkDuplicates Read 124,000,000 records. Elapsed time: 00:03:59s. Time for last 1,000,000: 1s. Last read position: chr3:66,394,139
INFO 2026-06-08 08:58:39 MarkDuplicates Tracking 1442270 as yet unmatched pairs. 43140 records in RAM.
INFO 2026-06-08 08:58:40 MarkDuplicates Read 125,000,000 records. Elapsed time: 00:04:01s. Time for last 1,000,000: 1s. Last read position: chr3:98,820,274
INFO 2026-06-08 08:58:40 MarkDuplicates Tracking 1439962 as yet unmatched pairs. 40793 records in RAM.
INFO 2026-06-08 08:58:43 MarkDuplicates Read 126,000,000 records. Elapsed time: 00:04:03s. Time for last 1,000,000: 2s. Last read position: chr3:101,853,466
INFO 2026-06-08 08:58:43 MarkDuplicates Tracking 1437656 as yet unmatched pairs. 38471 records in RAM.
INFO 2026-06-08 08:58:44 MarkDuplicates Read 127,000,000 records. Elapsed time: 00:04:05s. Time for last 1,000,000: 1s. Last read position: chr3:119,401,991
INFO 2026-06-08 08:58:44 MarkDuplicates Tracking 1434809 as yet unmatched pairs. 35608 records in RAM.
INFO 2026-06-08 08:58:46 MarkDuplicates Read 128,000,000 records. Elapsed time: 00:04:06s. Time for last 1,000,000: 1s. Last read position: chr3:123,647,373
INFO 2026-06-08 08:58:46 MarkDuplicates Tracking 1432394 as yet unmatched pairs. 33190 records in RAM.
INFO 2026-06-08 08:58:47 MarkDuplicates Read 129,000,000 records. Elapsed time: 00:04:08s. Time for last 1,000,000: 1s. Last read position: chr3:127,821,836
INFO 2026-06-08 08:58:47 MarkDuplicates Tracking 1428741 as yet unmatched pairs. 29524 records in RAM.
INFO 2026-06-08 08:58:50 MarkDuplicates Read 130,000,000 records. Elapsed time: 00:04:11s. Time for last 1,000,000: 2s. Last read position: chr3:129,575,541
INFO 2026-06-08 08:58:50 MarkDuplicates Tracking 1426841 as yet unmatched pairs. 27602 records in RAM.
INFO 2026-06-08 08:58:51 MarkDuplicates Read 131,000,000 records. Elapsed time: 00:04:12s. Time for last 1,000,000: 1s. Last read position: chr3:136,152,410
INFO 2026-06-08 08:58:51 MarkDuplicates Tracking 1423592 as yet unmatched pairs. 24340 records in RAM.
INFO 2026-06-08 08:58:53 MarkDuplicates Read 132,000,000 records. Elapsed time: 00:04:14s. Time for last 1,000,000: 1s. Last read position: chr3:146,521,996
INFO 2026-06-08 08:58:53 MarkDuplicates Tracking 1420490 as yet unmatched pairs. 21206 records in RAM.
INFO 2026-06-08 08:58:55 MarkDuplicates Read 133,000,000 records. Elapsed time: 00:04:15s. Time for last 1,000,000: 1s. Last read position: chr3:152,447,626
INFO 2026-06-08 08:58:55 MarkDuplicates Tracking 1418870 as yet unmatched pairs. 19576 records in RAM.
INFO 2026-06-08 08:58:56 MarkDuplicates Read 134,000,000 records. Elapsed time: 00:04:17s. Time for last 1,000,000: 1s. Last read position: chr3:167,531,156
INFO 2026-06-08 08:58:56 MarkDuplicates Tracking 1414528 as yet unmatched pairs. 15213 records in RAM.
INFO 2026-06-08 08:58:58 MarkDuplicates Read 135,000,000 records. Elapsed time: 00:04:19s. Time for last 1,000,000: 1s. Last read position: chr3:179,386,564
INFO 2026-06-08 08:58:58 MarkDuplicates Tracking 1412167 as yet unmatched pairs. 12821 records in RAM.
INFO 2026-06-08 08:59:00 MarkDuplicates Read 136,000,000 records. Elapsed time: 00:04:21s. Time for last 1,000,000: 2s. Last read position: chr3:184,314,663
INFO 2026-06-08 08:59:00 MarkDuplicates Tracking 1409862 as yet unmatched pairs. 10505 records in RAM.
INFO 2026-06-08 08:59:02 MarkDuplicates Read 137,000,000 records. Elapsed time: 00:04:23s. Time for last 1,000,000: 1s. Last read position: chr3:186,789,045
INFO 2026-06-08 08:59:02 MarkDuplicates Tracking 1406964 as yet unmatched pairs. 7601 records in RAM.
INFO 2026-06-08 08:59:04 MarkDuplicates Read 138,000,000 records. Elapsed time: 00:04:25s. Time for last 1,000,000: 1s. Last read position: chr3:193,615,015
INFO 2026-06-08 08:59:04 MarkDuplicates Tracking 1404117 as yet unmatched pairs. 4720 records in RAM.
INFO 2026-06-08 08:59:06 MarkDuplicates Read 139,000,000 records. Elapsed time: 00:04:27s. Time for last 1,000,000: 1s. Last read position: chr3:195,782,549
INFO 2026-06-08 08:59:06 MarkDuplicates Tracking 1403286 as yet unmatched pairs. 3886 records in RAM.
INFO 2026-06-08 08:59:08 MarkDuplicates Read 140,000,000 records. Elapsed time: 00:04:29s. Time for last 1,000,000: 2s. Last read position: chr4:337,986
INFO 2026-06-08 08:59:08 MarkDuplicates Tracking 1399699 as yet unmatched pairs. 69615 records in RAM.
INFO 2026-06-08 08:59:10 MarkDuplicates Read 141,000,000 records. Elapsed time: 00:04:31s. Time for last 1,000,000: 1s. Last read position: chr4:1,728,481
INFO 2026-06-08 08:59:10 MarkDuplicates Tracking 1396451 as yet unmatched pairs. 66356 records in RAM.
INFO 2026-06-08 08:59:12 MarkDuplicates Read 142,000,000 records. Elapsed time: 00:04:33s. Time for last 1,000,000: 1s. Last read position: chr4:3,317,441
INFO 2026-06-08 08:59:12 MarkDuplicates Tracking 1393017 as yet unmatched pairs. 62884 records in RAM.
INFO 2026-06-08 08:59:14 MarkDuplicates Read 143,000,000 records. Elapsed time: 00:04:35s. Time for last 1,000,000: 1s. Last read position: chr4:8,305,973
INFO 2026-06-08 08:59:14 MarkDuplicates Tracking 1390122 as yet unmatched pairs. 59980 records in RAM.
INFO 2026-06-08 08:59:15 MarkDuplicates Read 144,000,000 records. Elapsed time: 00:04:36s. Time for last 1,000,000: 1s. Last read position: chr4:25,234,130
INFO 2026-06-08 08:59:15 MarkDuplicates Tracking 1387336 as yet unmatched pairs. 57183 records in RAM.
INFO 2026-06-08 08:59:17 MarkDuplicates Read 145,000,000 records. Elapsed time: 00:04:38s. Time for last 1,000,000: 1s. Last read position: chr4:25,662,748
INFO 2026-06-08 08:59:17 MarkDuplicates Tracking 1483057 as yet unmatched pairs. 152903 records in RAM.
INFO 2026-06-08 08:59:19 MarkDuplicates Read 146,000,000 records. Elapsed time: 00:04:40s. Time for last 1,000,000: 1s. Last read position: chr4:25,666,170
INFO 2026-06-08 08:59:19 MarkDuplicates Tracking 1456164 as yet unmatched pairs. 126009 records in RAM.
INFO 2026-06-08 08:59:21 MarkDuplicates Read 147,000,000 records. Elapsed time: 00:04:42s. Time for last 1,000,000: 2s. Last read position: chr4:25,669,719
INFO 2026-06-08 08:59:21 MarkDuplicates Tracking 1415123 as yet unmatched pairs. 84958 records in RAM.
INFO 2026-06-08 08:59:23 MarkDuplicates Read 148,000,000 records. Elapsed time: 00:04:44s. Time for last 1,000,000: 1s. Last read position: chr4:25,671,710
INFO 2026-06-08 08:59:23 MarkDuplicates Tracking 1452778 as yet unmatched pairs. 122610 records in RAM.
INFO 2026-06-08 08:59:25 MarkDuplicates Read 149,000,000 records. Elapsed time: 00:04:46s. Time for last 1,000,000: 1s. Last read position: chr4:25,674,334
INFO 2026-06-08 08:59:25 MarkDuplicates Tracking 1409736 as yet unmatched pairs. 79567 records in RAM.
INFO 2026-06-08 08:59:26 MarkDuplicates Read 150,000,000 records. Elapsed time: 00:04:47s. Time for last 1,000,000: 1s. Last read position: chr4:25,676,218
INFO 2026-06-08 08:59:26 MarkDuplicates Tracking 1418710 as yet unmatched pairs. 88538 records in RAM.
INFO 2026-06-08 08:59:28 MarkDuplicates Read 151,000,000 records. Elapsed time: 00:04:49s. Time for last 1,000,000: 1s. Last read position: chr4:25,676,575
INFO 2026-06-08 08:59:28 MarkDuplicates Tracking 1404642 as yet unmatched pairs. 74466 records in RAM.
INFO 2026-06-08 08:59:30 MarkDuplicates Read 152,000,000 records. Elapsed time: 00:04:51s. Time for last 1,000,000: 1s. Last read position: chr4:39,308,800
INFO 2026-06-08 08:59:30 MarkDuplicates Tracking 1366191 as yet unmatched pairs. 35988 records in RAM.
INFO 2026-06-08 08:59:32 MarkDuplicates Read 153,000,000 records. Elapsed time: 00:04:53s. Time for last 1,000,000: 1s. Last read position: chr4:42,485,547
INFO 2026-06-08 08:59:32 MarkDuplicates Tracking 1363473 as yet unmatched pairs. 33253 records in RAM.
INFO 2026-06-08 08:59:34 MarkDuplicates Read 154,000,000 records. Elapsed time: 00:04:55s. Time for last 1,000,000: 1s. Last read position: chr4:56,448,508
INFO 2026-06-08 08:59:34 MarkDuplicates Tracking 1361671 as yet unmatched pairs. 31429 records in RAM.
INFO 2026-06-08 08:59:36 MarkDuplicates Read 155,000,000 records. Elapsed time: 00:04:56s. Time for last 1,000,000: 1s. Last read position: chr4:73,135,129
INFO 2026-06-08 08:59:36 MarkDuplicates Tracking 1358901 as yet unmatched pairs. 28648 records in RAM.
INFO 2026-06-08 08:59:37 MarkDuplicates Read 156,000,000 records. Elapsed time: 00:04:58s. Time for last 1,000,000: 1s. Last read position: chr4:77,055,326
INFO 2026-06-08 08:59:37 MarkDuplicates Tracking 1360653 as yet unmatched pairs. 30376 records in RAM.
INFO 2026-06-08 08:59:39 MarkDuplicates Read 157,000,000 records. Elapsed time: 00:05:00s. Time for last 1,000,000: 1s. Last read position: chr4:84,850,020
INFO 2026-06-08 08:59:39 MarkDuplicates Tracking 1352935 as yet unmatched pairs. 22640 records in RAM.
INFO 2026-06-08 08:59:41 MarkDuplicates Read 158,000,000 records. Elapsed time: 00:05:02s. Time for last 1,000,000: 1s. Last read position: chr4:89,934,838
INFO 2026-06-08 08:59:41 MarkDuplicates Tracking 1350115 as yet unmatched pairs. 19812 records in RAM.
INFO 2026-06-08 08:59:43 MarkDuplicates Read 159,000,000 records. Elapsed time: 00:05:03s. Time for last 1,000,000: 1s. Last read position: chr4:105,234,695
INFO 2026-06-08 08:59:43 MarkDuplicates Tracking 1348168 as yet unmatched pairs. 17853 records in RAM.
INFO 2026-06-08 08:59:44 MarkDuplicates Read 160,000,000 records. Elapsed time: 00:05:05s. Time for last 1,000,000: 1s. Last read position: chr4:117,062,337
INFO 2026-06-08 08:59:44 MarkDuplicates Tracking 1344709 as yet unmatched pairs. 14384 records in RAM.
INFO 2026-06-08 08:59:46 MarkDuplicates Read 161,000,000 records. Elapsed time: 00:05:07s. Time for last 1,000,000: 1s. Last read position: chr4:127,941,886
INFO 2026-06-08 08:59:46 MarkDuplicates Tracking 1342203 as yet unmatched pairs. 11870 records in RAM.
INFO 2026-06-08 08:59:48 MarkDuplicates Read 162,000,000 records. Elapsed time: 00:05:09s. Time for last 1,000,000: 1s. Last read position: chr4:147,287,565
INFO 2026-06-08 08:59:48 MarkDuplicates Tracking 1339453 as yet unmatched pairs. 9100 records in RAM.
INFO 2026-06-08 08:59:49 MarkDuplicates Read 163,000,000 records. Elapsed time: 00:05:10s. Time for last 1,000,000: 1s. Last read position: chr4:153,781,427
INFO 2026-06-08 08:59:49 MarkDuplicates Tracking 1338310 as yet unmatched pairs. 7929 records in RAM.
INFO 2026-06-08 08:59:51 MarkDuplicates Read 164,000,000 records. Elapsed time: 00:05:12s. Time for last 1,000,000: 2s. Last read position: chr4:169,122,120
INFO 2026-06-08 08:59:51 MarkDuplicates Tracking 1334556 as yet unmatched pairs. 4165 records in RAM.
INFO 2026-06-08 08:59:54 MarkDuplicates Read 165,000,000 records. Elapsed time: 00:05:15s. Time for last 1,000,000: 2s. Last read position: chr4:185,310,703
INFO 2026-06-08 08:59:54 MarkDuplicates Tracking 1331747 as yet unmatched pairs. 1323 records in RAM.
INFO 2026-06-08 08:59:57 MarkDuplicates Read 166,000,000 records. Elapsed time: 00:05:18s. Time for last 1,000,000: 2s. Last read position: chr5:1,344,704
INFO 2026-06-08 08:59:57 MarkDuplicates Tracking 1329458 as yet unmatched pairs. 108264 records in RAM.
INFO 2026-06-08 08:59:59 MarkDuplicates Read 167,000,000 records. Elapsed time: 00:05:20s. Time for last 1,000,000: 2s. Last read position: chr5:10,381,981
INFO 2026-06-08 08:59:59 MarkDuplicates Tracking 1327370 as yet unmatched pairs. 106169 records in RAM.
INFO 2026-06-08 09:00:01 MarkDuplicates Read 168,000,000 records. Elapsed time: 00:05:22s. Time for last 1,000,000: 2s. Last read position: chr5:14,461,148
INFO 2026-06-08 09:00:01 MarkDuplicates Tracking 1324552 as yet unmatched pairs. 103346 records in RAM.
INFO 2026-06-08 09:00:03 MarkDuplicates Read 169,000,000 records. Elapsed time: 00:05:24s. Time for last 1,000,000: 1s. Last read position: chr5:32,263,187
INFO 2026-06-08 09:00:03 MarkDuplicates Tracking 1319677 as yet unmatched pairs. 98452 records in RAM.
INFO 2026-06-08 09:00:05 MarkDuplicates Read 170,000,000 records. Elapsed time: 00:05:26s. Time for last 1,000,000: 1s. Last read position: chr5:38,932,876
INFO 2026-06-08 09:00:05 MarkDuplicates Tracking 1317963 as yet unmatched pairs. 96706 records in RAM.
INFO 2026-06-08 09:00:07 MarkDuplicates Read 171,000,000 records. Elapsed time: 00:05:28s. Time for last 1,000,000: 1s. Last read position: chr5:43,653,184
INFO 2026-06-08 09:00:07 MarkDuplicates Tracking 1315201 as yet unmatched pairs. 93935 records in RAM.
INFO 2026-06-08 09:00:09 MarkDuplicates Read 172,000,000 records. Elapsed time: 00:05:30s. Time for last 1,000,000: 1s. Last read position: chr5:56,882,134
INFO 2026-06-08 09:00:09 MarkDuplicates Tracking 1311794 as yet unmatched pairs. 90516 records in RAM.
INFO 2026-06-08 09:00:11 MarkDuplicates Read 173,000,000 records. Elapsed time: 00:05:32s. Time for last 1,000,000: 2s. Last read position: chr5:69,258,092
INFO 2026-06-08 09:00:11 MarkDuplicates Tracking 1309105 as yet unmatched pairs. 87814 records in RAM.
INFO 2026-06-08 09:00:13 MarkDuplicates Read 174,000,000 records. Elapsed time: 00:05:34s. Time for last 1,000,000: 1s. Last read position: chr5:72,314,081
INFO 2026-06-08 09:00:13 MarkDuplicates Tracking 1307444 as yet unmatched pairs. 86140 records in RAM.
INFO 2026-06-08 09:00:15 MarkDuplicates Read 175,000,000 records. Elapsed time: 00:05:36s. Time for last 1,000,000: 1s. Last read position: chr5:77,761,038
INFO 2026-06-08 09:00:15 MarkDuplicates Tracking 1304558 as yet unmatched pairs. 83245 records in RAM.
INFO 2026-06-08 09:00:17 MarkDuplicates Read 176,000,000 records. Elapsed time: 00:05:37s. Time for last 1,000,000: 1s. Last read position: chr5:83,537,218
INFO 2026-06-08 09:00:17 MarkDuplicates Tracking 1303108 as yet unmatched pairs. 81778 records in RAM.
INFO 2026-06-08 09:00:18 MarkDuplicates Read 177,000,000 records. Elapsed time: 00:05:39s. Time for last 1,000,000: 1s. Last read position: chr5:93,958,783
INFO 2026-06-08 09:00:18 MarkDuplicates Tracking 1299424 as yet unmatched pairs. 78063 records in RAM.
INFO 2026-06-08 09:00:20 MarkDuplicates Read 178,000,000 records. Elapsed time: 00:05:41s. Time for last 1,000,000: 1s. Last read position: chr5:103,025,220
INFO 2026-06-08 09:00:20 MarkDuplicates Tracking 1297731 as yet unmatched pairs. 76367 records in RAM.
INFO 2026-06-08 09:00:22 MarkDuplicates Read 179,000,000 records. Elapsed time: 00:05:43s. Time for last 1,000,000: 2s. Last read position: chr5:119,496,546
INFO 2026-06-08 09:00:22 MarkDuplicates Tracking 1295270 as yet unmatched pairs. 73893 records in RAM.
INFO 2026-06-08 09:00:24 MarkDuplicates Read 180,000,000 records. Elapsed time: 00:05:45s. Time for last 1,000,000: 1s. Last read position: chr5:132,752,165
INFO 2026-06-08 09:00:24 MarkDuplicates Tracking 1291178 as yet unmatched pairs. 69797 records in RAM.
INFO 2026-06-08 09:00:26 MarkDuplicates Read 181,000,000 records. Elapsed time: 00:05:47s. Time for last 1,000,000: 1s. Last read position: chr5:134,874,498
INFO 2026-06-08 09:00:26 MarkDuplicates Tracking 1289005 as yet unmatched pairs. 67608 records in RAM.
INFO 2026-06-08 09:00:28 MarkDuplicates Read 182,000,000 records. Elapsed time: 00:05:49s. Time for last 1,000,000: 1s. Last read position: chr5:138,467,862
INFO 2026-06-08 09:00:28 MarkDuplicates Tracking 1289852 as yet unmatched pairs. 68444 records in RAM.
INFO 2026-06-08 09:00:30 MarkDuplicates Read 183,000,000 records. Elapsed time: 00:05:51s. Time for last 1,000,000: 1s. Last read position: chr5:139,626,773
INFO 2026-06-08 09:00:30 MarkDuplicates Tracking 1283057 as yet unmatched pairs. 61648 records in RAM.
INFO 2026-06-08 09:00:31 MarkDuplicates Read 184,000,000 records. Elapsed time: 00:05:52s. Time for last 1,000,000: 1s. Last read position: chr5:141,123,881
INFO 2026-06-08 09:00:31 MarkDuplicates Tracking 1279865 as yet unmatched pairs. 58437 records in RAM.
INFO 2026-06-08 09:00:33 MarkDuplicates Read 185,000,000 records. Elapsed time: 00:05:54s. Time for last 1,000,000: 1s. Last read position: chr5:141,573,692
INFO 2026-06-08 09:00:33 MarkDuplicates Tracking 1277016 as yet unmatched pairs. 55587 records in RAM.
INFO 2026-06-08 09:00:35 MarkDuplicates Read 186,000,000 records. Elapsed time: 00:05:56s. Time for last 1,000,000: 2s. Last read position: chr5:146,463,674
INFO 2026-06-08 09:00:35 MarkDuplicates Tracking 1274410 as yet unmatched pairs. 52966 records in RAM.
INFO 2026-06-08 09:00:37 MarkDuplicates Read 187,000,000 records. Elapsed time: 00:05:58s. Time for last 1,000,000: 1s. Last read position: chr5:150,123,076
INFO 2026-06-08 09:00:37 MarkDuplicates Tracking 1274033 as yet unmatched pairs. 52579 records in RAM.
INFO 2026-06-08 09:00:39 MarkDuplicates Read 188,000,000 records. Elapsed time: 00:06:00s. Time for last 1,000,000: 2s. Last read position: chr5:150,402,158
INFO 2026-06-08 09:00:39 MarkDuplicates Tracking 1331916 as yet unmatched pairs. 110452 records in RAM.
INFO 2026-06-08 09:00:41 MarkDuplicates Read 189,000,000 records. Elapsed time: 00:06:02s. Time for last 1,000,000: 2s. Last read position: chr5:150,402,585
INFO 2026-06-08 09:00:41 MarkDuplicates Tracking 1367655 as yet unmatched pairs. 146186 records in RAM.
INFO 2026-06-08 09:00:43 MarkDuplicates Read 190,000,000 records. Elapsed time: 00:06:04s. Time for last 1,000,000: 1s. Last read position: chr5:150,404,746
INFO 2026-06-08 09:00:43 MarkDuplicates Tracking 1338044 as yet unmatched pairs. 116572 records in RAM.
INFO 2026-06-08 09:00:45 MarkDuplicates Read 191,000,000 records. Elapsed time: 00:06:06s. Time for last 1,000,000: 2s. Last read position: chr5:150,405,180
INFO 2026-06-08 09:00:45 MarkDuplicates Tracking 1353159 as yet unmatched pairs. 131680 records in RAM.
INFO 2026-06-08 09:00:47 MarkDuplicates Read 192,000,000 records. Elapsed time: 00:06:08s. Time for last 1,000,000: 2s. Last read position: chr5:150,407,192
INFO 2026-06-08 09:00:47 MarkDuplicates Tracking 1296557 as yet unmatched pairs. 75063 records in RAM.
INFO 2026-06-08 09:00:49 MarkDuplicates Read 193,000,000 records. Elapsed time: 00:06:10s. Time for last 1,000,000: 2s. Last read position: chr5:150,649,289
INFO 2026-06-08 09:00:49 MarkDuplicates Tracking 1254988 as yet unmatched pairs. 33491 records in RAM.
INFO 2026-06-08 09:00:51 MarkDuplicates Read 194,000,000 records. Elapsed time: 00:06:12s. Time for last 1,000,000: 1s. Last read position: chr5:151,797,376
INFO 2026-06-08 09:00:51 MarkDuplicates Tracking 1251772 as yet unmatched pairs. 30272 records in RAM.
INFO 2026-06-08 09:00:53 MarkDuplicates Read 195,000,000 records. Elapsed time: 00:06:14s. Time for last 1,000,000: 1s. Last read position: chr5:159,159,010
INFO 2026-06-08 09:00:53 MarkDuplicates Tracking 1248577 as yet unmatched pairs. 27067 records in RAM.
INFO 2026-06-08 09:00:55 MarkDuplicates Read 196,000,000 records. Elapsed time: 00:06:16s. Time for last 1,000,000: 1s. Last read position: chr5:171,387,894
INFO 2026-06-08 09:00:55 MarkDuplicates Tracking 1269432 as yet unmatched pairs. 47906 records in RAM.
INFO 2026-06-08 09:00:57 MarkDuplicates Read 197,000,000 records. Elapsed time: 00:06:18s. Time for last 1,000,000: 2s. Last read position: chr5:171,392,814
INFO 2026-06-08 09:00:57 MarkDuplicates Tracking 1264246 as yet unmatched pairs. 42719 records in RAM.
INFO 2026-06-08 09:00:59 MarkDuplicates Read 198,000,000 records. Elapsed time: 00:06:20s. Time for last 1,000,000: 1s. Last read position: chr5:172,770,809
INFO 2026-06-08 09:00:59 MarkDuplicates Tracking 1243235 as yet unmatched pairs. 21692 records in RAM.
INFO 2026-06-08 09:01:01 MarkDuplicates Read 199,000,000 records. Elapsed time: 00:06:22s. Time for last 1,000,000: 1s. Last read position: chr5:177,295,334
INFO 2026-06-08 09:01:01 MarkDuplicates Tracking 1236980 as yet unmatched pairs. 15429 records in RAM.
INFO 2026-06-08 09:01:02 MarkDuplicates Read 200,000,000 records. Elapsed time: 00:06:23s. Time for last 1,000,000: 1s. Last read position: chr5:179,559,830
INFO 2026-06-08 09:01:02 MarkDuplicates Tracking 1234144 as yet unmatched pairs. 12590 records in RAM.
INFO 2026-06-08 09:01:05 MarkDuplicates Read 201,000,000 records. Elapsed time: 00:06:26s. Time for last 1,000,000: 2s. Last read position: chr5:179,820,997
INFO 2026-06-08 09:01:05 MarkDuplicates Tracking 1253031 as yet unmatched pairs. 31470 records in RAM.
INFO 2026-06-08 09:01:07 MarkDuplicates Read 202,000,000 records. Elapsed time: 00:06:27s. Time for last 1,000,000: 1s. Last read position: chr5:179,833,674
INFO 2026-06-08 09:01:07 MarkDuplicates Tracking 1239753 as yet unmatched pairs. 18186 records in RAM.
INFO 2026-06-08 09:01:09 MarkDuplicates Read 203,000,000 records. Elapsed time: 00:06:29s. Time for last 1,000,000: 1s. Last read position: chr5:180,590,788
INFO 2026-06-08 09:01:09 MarkDuplicates Tracking 1224970 as yet unmatched pairs. 3383 records in RAM.
INFO 2026-06-08 09:01:12 MarkDuplicates Read 204,000,000 records. Elapsed time: 00:06:33s. Time for last 1,000,000: 3s. Last read position: chr6:1,312,704
INFO 2026-06-08 09:01:12 MarkDuplicates Tracking 1222272 as yet unmatched pairs. 76354 records in RAM.
INFO 2026-06-08 09:01:15 MarkDuplicates Read 205,000,000 records. Elapsed time: 00:06:36s. Time for last 1,000,000: 2s. Last read position: chr6:7,240,477
INFO 2026-06-08 09:01:15 MarkDuplicates Tracking 1219779 as yet unmatched pairs. 73846 records in RAM.
INFO 2026-06-08 09:01:17 MarkDuplicates Read 206,000,000 records. Elapsed time: 00:06:38s. Time for last 1,000,000: 2s. Last read position: chr6:16,129,307
INFO 2026-06-08 09:01:17 MarkDuplicates Tracking 1215765 as yet unmatched pairs. 69817 records in RAM.
INFO 2026-06-08 09:01:19 MarkDuplicates Read 207,000,000 records. Elapsed time: 00:06:39s. Time for last 1,000,000: 1s. Last read position: chr6:26,123,565
INFO 2026-06-08 09:01:19 MarkDuplicates Tracking 1215898 as yet unmatched pairs. 69909 records in RAM.
INFO 2026-06-08 09:01:20 MarkDuplicates Read 208,000,000 records. Elapsed time: 00:06:41s. Time for last 1,000,000: 1s. Last read position: chr6:29,725,075
INFO 2026-06-08 09:01:20 MarkDuplicates Tracking 1210320 as yet unmatched pairs. 64318 records in RAM.
INFO 2026-06-08 09:01:22 MarkDuplicates Read 209,000,000 records. Elapsed time: 00:06:43s. Time for last 1,000,000: 1s. Last read position: chr6:30,704,644
INFO 2026-06-08 09:01:22 MarkDuplicates Tracking 1207652 as yet unmatched pairs. 61639 records in RAM.
INFO 2026-06-08 09:01:24 MarkDuplicates Read 210,000,000 records. Elapsed time: 00:06:45s. Time for last 1,000,000: 1s. Last read position: chr6:31,355,431
INFO 2026-06-08 09:01:24 MarkDuplicates Tracking 1209118 as yet unmatched pairs. 63088 records in RAM.
INFO 2026-06-08 09:01:26 MarkDuplicates Read 211,000,000 records. Elapsed time: 00:06:46s. Time for last 1,000,000: 1s. Last read position: chr6:31,687,141
INFO 2026-06-08 09:01:26 MarkDuplicates Tracking 1202387 as yet unmatched pairs. 56346 records in RAM.
INFO 2026-06-08 09:01:27 MarkDuplicates Read 212,000,000 records. Elapsed time: 00:06:48s. Time for last 1,000,000: 1s. Last read position: chr6:31,829,609
INFO 2026-06-08 09:01:27 MarkDuplicates Tracking 1201502 as yet unmatched pairs. 55460 records in RAM.
INFO 2026-06-08 09:01:29 MarkDuplicates Read 213,000,000 records. Elapsed time: 00:06:50s. Time for last 1,000,000: 1s. Last read position: chr6:32,029,979
INFO 2026-06-08 09:01:29 MarkDuplicates Tracking 1199237 as yet unmatched pairs. 53189 records in RAM.
INFO 2026-06-08 09:01:31 MarkDuplicates Read 214,000,000 records. Elapsed time: 00:06:52s. Time for last 1,000,000: 1s. Last read position: chr6:32,181,123
INFO 2026-06-08 09:01:31 MarkDuplicates Tracking 1196856 as yet unmatched pairs. 50793 records in RAM.
INFO 2026-06-08 09:01:33 MarkDuplicates Read 215,000,000 records. Elapsed time: 00:06:54s. Time for last 1,000,000: 2s. Last read position: chr6:32,664,978
INFO 2026-06-08 09:01:33 MarkDuplicates Tracking 1194355 as yet unmatched pairs. 48290 records in RAM.
INFO 2026-06-08 09:01:35 MarkDuplicates Read 216,000,000 records. Elapsed time: 00:06:56s. Time for last 1,000,000: 1s. Last read position: chr6:33,080,894
INFO 2026-06-08 09:01:35 MarkDuplicates Tracking 1191047 as yet unmatched pairs. 44973 records in RAM.
INFO 2026-06-08 09:01:37 MarkDuplicates Read 217,000,000 records. Elapsed time: 00:06:58s. Time for last 1,000,000: 1s. Last read position: chr6:33,415,950
INFO 2026-06-08 09:01:37 MarkDuplicates Tracking 1189688 as yet unmatched pairs. 43610 records in RAM.
INFO 2026-06-08 09:01:39 MarkDuplicates Read 218,000,000 records. Elapsed time: 00:07:00s. Time for last 1,000,000: 1s. Last read position: chr6:35,620,263
INFO 2026-06-08 09:01:39 MarkDuplicates Tracking 1184958 as yet unmatched pairs. 38875 records in RAM.
INFO 2026-06-08 09:01:41 MarkDuplicates Read 219,000,000 records. Elapsed time: 00:07:02s. Time for last 1,000,000: 1s. Last read position: chr6:41,740,597
INFO 2026-06-08 09:01:41 MarkDuplicates Tracking 1181510 as yet unmatched pairs. 35413 records in RAM.
INFO 2026-06-08 09:01:42 MarkDuplicates Read 220,000,000 records. Elapsed time: 00:07:03s. Time for last 1,000,000: 1s. Last read position: chr6:43,516,082
INFO 2026-06-08 09:01:42 MarkDuplicates Tracking 1177958 as yet unmatched pairs. 31854 records in RAM.
INFO 2026-06-08 09:01:44 MarkDuplicates Read 221,000,000 records. Elapsed time: 00:07:05s. Time for last 1,000,000: 1s. Last read position: chr6:47,232,913
INFO 2026-06-08 09:01:44 MarkDuplicates Tracking 1175028 as yet unmatched pairs. 28923 records in RAM.
INFO 2026-06-08 09:01:46 MarkDuplicates Read 222,000,000 records. Elapsed time: 00:07:07s. Time for last 1,000,000: 1s. Last read position: chr6:63,646,661
INFO 2026-06-08 09:01:46 MarkDuplicates Tracking 1172316 as yet unmatched pairs. 26187 records in RAM.
INFO 2026-06-08 09:01:48 MarkDuplicates Read 223,000,000 records. Elapsed time: 00:07:08s. Time for last 1,000,000: 1s. Last read position: chr6:82,365,708
INFO 2026-06-08 09:01:48 MarkDuplicates Tracking 1169753 as yet unmatched pairs. 23607 records in RAM.
INFO 2026-06-08 09:01:49 MarkDuplicates Read 224,000,000 records. Elapsed time: 00:07:10s. Time for last 1,000,000: 1s. Last read position: chr6:106,521,191
INFO 2026-06-08 09:01:49 MarkDuplicates Tracking 1167178 as yet unmatched pairs. 21014 records in RAM.
INFO 2026-06-08 09:01:52 MarkDuplicates Read 225,000,000 records. Elapsed time: 00:07:12s. Time for last 1,000,000: 2s. Last read position: chr6:116,278,981
INFO 2026-06-08 09:01:52 MarkDuplicates Tracking 1164350 as yet unmatched pairs. 18171 records in RAM.
INFO 2026-06-08 09:01:53 MarkDuplicates Read 226,000,000 records. Elapsed time: 00:07:14s. Time for last 1,000,000: 1s. Last read position: chr6:122,725,129
INFO 2026-06-08 09:01:53 MarkDuplicates Tracking 1161451 as yet unmatched pairs. 15263 records in RAM.
INFO 2026-06-08 09:01:56 MarkDuplicates Read 227,000,000 records. Elapsed time: 00:07:17s. Time for last 1,000,000: 2s. Last read position: chr6:135,456,321
INFO 2026-06-08 09:01:56 MarkDuplicates Tracking 1158832 as yet unmatched pairs. 12632 records in RAM.
INFO 2026-06-08 09:01:58 MarkDuplicates Read 228,000,000 records. Elapsed time: 00:07:19s. Time for last 1,000,000: 1s. Last read position: chr6:144,839,200
INFO 2026-06-08 09:01:58 MarkDuplicates Tracking 1156383 as yet unmatched pairs. 10173 records in RAM.
INFO 2026-06-08 09:01:59 MarkDuplicates Read 229,000,000 records. Elapsed time: 00:07:20s. Time for last 1,000,000: 1s. Last read position: chr6:153,282,465
INFO 2026-06-08 09:01:59 MarkDuplicates Tracking 1153403 as yet unmatched pairs. 7183 records in RAM.
INFO 2026-06-08 09:02:01 MarkDuplicates Read 230,000,000 records. Elapsed time: 00:07:22s. Time for last 1,000,000: 1s. Last read position: chr6:159,682,347
INFO 2026-06-08 09:02:01 MarkDuplicates Tracking 1150533 as yet unmatched pairs. 4299 records in RAM.
INFO 2026-06-08 09:02:03 MarkDuplicates Read 231,000,000 records. Elapsed time: 00:07:24s. Time for last 1,000,000: 1s. Last read position: chr6:169,221,439
INFO 2026-06-08 09:02:03 MarkDuplicates Tracking 1148011 as yet unmatched pairs. 1762 records in RAM.
INFO 2026-06-08 09:02:05 MarkDuplicates Read 232,000,000 records. Elapsed time: 00:07:26s. Time for last 1,000,000: 2s. Last read position: chr7:2,360,809
INFO 2026-06-08 09:02:05 MarkDuplicates Tracking 1144785 as yet unmatched pairs. 76512 records in RAM.
INFO 2026-06-08 09:02:07 MarkDuplicates Read 233,000,000 records. Elapsed time: 00:07:28s. Time for last 1,000,000: 1s. Last read position: chr7:5,377,955
INFO 2026-06-08 09:02:07 MarkDuplicates Tracking 1141313 as yet unmatched pairs. 73026 records in RAM.
INFO 2026-06-08 09:02:09 MarkDuplicates Read 234,000,000 records. Elapsed time: 00:07:30s. Time for last 1,000,000: 1s. Last read position: chr7:5,528,514
INFO 2026-06-08 09:02:09 MarkDuplicates Tracking 1154537 as yet unmatched pairs. 86243 records in RAM.
INFO 2026-06-08 09:02:10 MarkDuplicates Read 235,000,000 records. Elapsed time: 00:07:31s. Time for last 1,000,000: 1s. Last read position: chr7:6,426,002
INFO 2026-06-08 09:02:10 MarkDuplicates Tracking 1134483 as yet unmatched pairs. 66185 records in RAM.
INFO 2026-06-08 09:02:12 MarkDuplicates Read 236,000,000 records. Elapsed time: 00:07:33s. Time for last 1,000,000: 1s. Last read position: chr7:22,812,995
INFO 2026-06-08 09:02:12 MarkDuplicates Tracking 1132891 as yet unmatched pairs. 64581 records in RAM.
INFO 2026-06-08 09:02:14 MarkDuplicates Read 237,000,000 records. Elapsed time: 00:07:35s. Time for last 1,000,000: 1s. Last read position: chr7:30,912,036
INFO 2026-06-08 09:02:14 MarkDuplicates Tracking 1130690 as yet unmatched pairs. 62358 records in RAM.
INFO 2026-06-08 09:02:15 MarkDuplicates Read 238,000,000 records. Elapsed time: 00:07:36s. Time for last 1,000,000: 1s. Last read position: chr7:44,039,620
INFO 2026-06-08 09:02:15 MarkDuplicates Tracking 1126313 as yet unmatched pairs. 57970 records in RAM.
INFO 2026-06-08 09:02:17 MarkDuplicates Read 239,000,000 records. Elapsed time: 00:07:38s. Time for last 1,000,000: 1s. Last read position: chr7:44,761,480
INFO 2026-06-08 09:02:17 MarkDuplicates Tracking 1123981 as yet unmatched pairs. 55621 records in RAM.
INFO 2026-06-08 09:02:19 MarkDuplicates Read 240,000,000 records. Elapsed time: 00:07:40s. Time for last 1,000,000: 1s. Last read position: chr7:55,156,822
INFO 2026-06-08 09:02:19 MarkDuplicates Tracking 1121381 as yet unmatched pairs. 53008 records in RAM.
INFO 2026-06-08 09:02:21 MarkDuplicates Read 241,000,000 records. Elapsed time: 00:07:42s. Time for last 1,000,000: 1s. Last read position: chr7:67,050,036
INFO 2026-06-08 09:02:21 MarkDuplicates Tracking 1117281 as yet unmatched pairs. 48898 records in RAM.
INFO 2026-06-08 09:02:23 MarkDuplicates Read 242,000,000 records. Elapsed time: 00:07:44s. Time for last 1,000,000: 2s. Last read position: chr7:74,043,024
INFO 2026-06-08 09:02:23 MarkDuplicates Tracking 1118428 as yet unmatched pairs. 50041 records in RAM.
INFO 2026-06-08 09:02:26 MarkDuplicates Read 243,000,000 records. Elapsed time: 00:07:47s. Time for last 1,000,000: 2s. Last read position: chr7:75,422,358
INFO 2026-06-08 09:02:26 MarkDuplicates Tracking 1113463 as yet unmatched pairs. 45045 records in RAM.
INFO 2026-06-08 09:02:28 MarkDuplicates Read 244,000,000 records. Elapsed time: 00:07:49s. Time for last 1,000,000: 1s. Last read position: chr7:76,511,032
INFO 2026-06-08 09:02:28 MarkDuplicates Tracking 1109884 as yet unmatched pairs. 41444 records in RAM.
INFO 2026-06-08 09:02:30 MarkDuplicates Read 245,000,000 records. Elapsed time: 00:07:51s. Time for last 1,000,000: 1s. Last read position: chr7:92,012,484
INFO 2026-06-08 09:02:30 MarkDuplicates Tracking 1107530 as yet unmatched pairs. 39083 records in RAM.
INFO 2026-06-08 09:03:32 MarkDuplicates Read 246,000,000 records. Elapsed time: 00:08:53s. Time for last 1,000,000: 62s. Last read position: chr7:94,410,902
INFO 2026-06-08 09:03:32 MarkDuplicates Tracking 1109061 as yet unmatched pairs. 40608 records in RAM.
INFO 2026-06-08 09:03:34 MarkDuplicates Read 247,000,000 records. Elapsed time: 00:08:55s. Time for last 1,000,000: 1s. Last read position: chr7:96,694,823
INFO 2026-06-08 09:03:34 MarkDuplicates Tracking 1102805 as yet unmatched pairs. 34334 records in RAM.
INFO 2026-06-08 09:03:36 MarkDuplicates Read 248,000,000 records. Elapsed time: 00:08:57s. Time for last 1,000,000: 1s. Last read position: chr7:100,023,508
INFO 2026-06-08 09:03:36 MarkDuplicates Tracking 1098691 as yet unmatched pairs. 30210 records in RAM.
INFO 2026-06-08 09:03:38 MarkDuplicates Read 249,000,000 records. Elapsed time: 00:08:58s. Time for last 1,000,000: 1s. Last read position: chr7:100,819,873
INFO 2026-06-08 09:03:38 MarkDuplicates Tracking 1095875 as yet unmatched pairs. 27393 records in RAM.
INFO 2026-06-08 09:03:39 MarkDuplicates Read 250,000,000 records. Elapsed time: 00:09:00s. Time for last 1,000,000: 1s. Last read position: chr7:102,538,511
INFO 2026-06-08 09:03:39 MarkDuplicates Tracking 1093732 as yet unmatched pairs. 25246 records in RAM.
INFO 2026-06-08 09:03:41 MarkDuplicates Read 251,000,000 records. Elapsed time: 00:09:02s. Time for last 1,000,000: 1s. Last read position: chr7:106,112,086
INFO 2026-06-08 09:03:41 MarkDuplicates Tracking 1091132 as yet unmatched pairs. 22624 records in RAM.
INFO 2026-06-08 09:03:43 MarkDuplicates Read 252,000,000 records. Elapsed time: 00:09:03s. Time for last 1,000,000: 1s. Last read position: chr7:116,700,023
INFO 2026-06-08 09:03:43 MarkDuplicates Tracking 1089228 as yet unmatched pairs. 20711 records in RAM.
INFO 2026-06-08 09:03:44 MarkDuplicates Read 253,000,000 records. Elapsed time: 00:09:05s. Time for last 1,000,000: 1s. Last read position: chr7:127,701,180
INFO 2026-06-08 09:03:44 MarkDuplicates Tracking 1088512 as yet unmatched pairs. 19991 records in RAM.
INFO 2026-06-08 09:03:46 MarkDuplicates Read 254,000,000 records. Elapsed time: 00:09:07s. Time for last 1,000,000: 1s. Last read position: chr7:130,024,281
INFO 2026-06-08 09:03:46 MarkDuplicates Tracking 1082442 as yet unmatched pairs. 13915 records in RAM.
INFO 2026-06-08 09:03:48 MarkDuplicates Read 255,000,000 records. Elapsed time: 00:09:08s. Time for last 1,000,000: 1s. Last read position: chr7:138,554,816
INFO 2026-06-08 09:03:48 MarkDuplicates Tracking 1080352 as yet unmatched pairs. 11812 records in RAM.
INFO 2026-06-08 09:03:49 MarkDuplicates Read 256,000,000 records. Elapsed time: 00:09:10s. Time for last 1,000,000: 1s. Last read position: chr7:143,299,968
INFO 2026-06-08 09:03:49 MarkDuplicates Tracking 1076922 as yet unmatched pairs. 8374 records in RAM.
INFO 2026-06-08 09:03:51 MarkDuplicates Read 257,000,000 records. Elapsed time: 00:09:12s. Time for last 1,000,000: 1s. Last read position: chr7:150,371,491
INFO 2026-06-08 09:03:51 MarkDuplicates Tracking 1075845 as yet unmatched pairs. 7295 records in RAM.
INFO 2026-06-08 09:03:53 MarkDuplicates Read 258,000,000 records. Elapsed time: 00:09:14s. Time for last 1,000,000: 1s. Last read position: chr7:152,162,514
INFO 2026-06-08 09:03:53 MarkDuplicates Tracking 1071369 as yet unmatched pairs. 2817 records in RAM.
INFO 2026-06-08 09:03:55 MarkDuplicates Read 259,000,000 records. Elapsed time: 00:09:16s. Time for last 1,000,000: 2s. Last read position: chr8:8,890,185
INFO 2026-06-08 09:03:55 MarkDuplicates Tracking 1068433 as yet unmatched pairs. 63752 records in RAM.
INFO 2026-06-08 09:03:57 MarkDuplicates Read 260,000,000 records. Elapsed time: 00:09:18s. Time for last 1,000,000: 2s. Last read position: chr8:16,155,133
INFO 2026-06-08 09:03:57 MarkDuplicates Tracking 1065247 as yet unmatched pairs. 60559 records in RAM.
INFO 2026-06-08 09:03:59 MarkDuplicates Read 261,000,000 records. Elapsed time: 00:09:20s. Time for last 1,000,000: 1s. Last read position: chr8:22,070,298
INFO 2026-06-08 09:03:59 MarkDuplicates Tracking 1062333 as yet unmatched pairs. 57627 records in RAM.
INFO 2026-06-08 09:04:01 MarkDuplicates Read 262,000,000 records. Elapsed time: 00:09:22s. Time for last 1,000,000: 1s. Last read position: chr8:22,591,651
INFO 2026-06-08 09:04:01 MarkDuplicates Tracking 1062346 as yet unmatched pairs. 57631 records in RAM.
INFO 2026-06-08 09:04:02 MarkDuplicates Read 263,000,000 records. Elapsed time: 00:09:23s. Time for last 1,000,000: 1s. Last read position: chr8:26,293,711
INFO 2026-06-08 09:04:02 MarkDuplicates Tracking 1056679 as yet unmatched pairs. 51954 records in RAM.
INFO 2026-06-08 09:04:04 MarkDuplicates Read 264,000,000 records. Elapsed time: 00:09:25s. Time for last 1,000,000: 1s. Last read position: chr8:30,385,134
INFO 2026-06-08 09:04:04 MarkDuplicates Tracking 1055103 as yet unmatched pairs. 50371 records in RAM.
INFO 2026-06-08 09:04:06 MarkDuplicates Read 265,000,000 records. Elapsed time: 00:09:27s. Time for last 1,000,000: 1s. Last read position: chr8:38,329,492
INFO 2026-06-08 09:04:06 MarkDuplicates Tracking 1051162 as yet unmatched pairs. 46425 records in RAM.
INFO 2026-06-08 09:04:08 MarkDuplicates Read 266,000,000 records. Elapsed time: 00:09:28s. Time for last 1,000,000: 1s. Last read position: chr8:38,997,141
INFO 2026-06-08 09:04:08 MarkDuplicates Tracking 1048976 as yet unmatched pairs. 44236 records in RAM.
INFO 2026-06-08 09:04:09 MarkDuplicates Read 267,000,000 records. Elapsed time: 00:09:30s. Time for last 1,000,000: 1s. Last read position: chr8:47,737,276
INFO 2026-06-08 09:04:09 MarkDuplicates Tracking 1048574 as yet unmatched pairs. 43823 records in RAM.
INFO 2026-06-08 09:04:11 MarkDuplicates Read 268,000,000 records. Elapsed time: 00:09:32s. Time for last 1,000,000: 1s. Last read position: chr8:56,073,752
INFO 2026-06-08 09:04:11 MarkDuplicates Tracking 1050204 as yet unmatched pairs. 45433 records in RAM.
INFO 2026-06-08 09:04:13 MarkDuplicates Read 269,000,000 records. Elapsed time: 00:09:34s. Time for last 1,000,000: 1s. Last read position: chr8:69,603,608
INFO 2026-06-08 09:04:13 MarkDuplicates Tracking 1039544 as yet unmatched pairs. 34756 records in RAM.
INFO 2026-06-08 09:04:14 MarkDuplicates Read 270,000,000 records. Elapsed time: 00:09:35s. Time for last 1,000,000: 1s. Last read position: chr8:80,558,825
INFO 2026-06-08 09:04:14 MarkDuplicates Tracking 1038533 as yet unmatched pairs. 33730 records in RAM.
INFO 2026-06-08 09:04:16 MarkDuplicates Read 271,000,000 records. Elapsed time: 00:09:37s. Time for last 1,000,000: 1s. Last read position: chr8:97,776,065
INFO 2026-06-08 09:04:16 MarkDuplicates Tracking 1037680 as yet unmatched pairs. 32868 records in RAM.
INFO 2026-06-08 09:04:18 MarkDuplicates Read 272,000,000 records. Elapsed time: 00:09:39s. Time for last 1,000,000: 1s. Last read position: chr8:100,717,865
INFO 2026-06-08 09:04:18 MarkDuplicates Tracking 1040141 as yet unmatched pairs. 35326 records in RAM.
INFO 2026-06-08 09:04:20 MarkDuplicates Read 273,000,000 records. Elapsed time: 00:09:41s. Time for last 1,000,000: 2s. Last read position: chr8:108,229,177
INFO 2026-06-08 09:04:20 MarkDuplicates Tracking 1033909 as yet unmatched pairs. 29085 records in RAM.
INFO 2026-06-08 09:04:22 MarkDuplicates Read 274,000,000 records. Elapsed time: 00:09:43s. Time for last 1,000,000: 1s. Last read position: chr8:123,254,173
INFO 2026-06-08 09:04:22 MarkDuplicates Tracking 1025976 as yet unmatched pairs. 21139 records in RAM.
INFO 2026-06-08 09:04:23 MarkDuplicates Read 275,000,000 records. Elapsed time: 00:09:44s. Time for last 1,000,000: 1s. Last read position: chr8:132,794,446
INFO 2026-06-08 09:04:23 MarkDuplicates Tracking 1023085 as yet unmatched pairs. 18224 records in RAM.
INFO 2026-06-08 09:04:25 MarkDuplicates Read 276,000,000 records. Elapsed time: 00:09:46s. Time for last 1,000,000: 1s. Last read position: chr8:143,215,436
INFO 2026-06-08 09:04:25 MarkDuplicates Tracking 1019979 as yet unmatched pairs. 15104 records in RAM.
INFO 2026-06-08 09:04:27 MarkDuplicates Read 277,000,000 records. Elapsed time: 00:09:47s. Time for last 1,000,000: 1s. Last read position: chr8:143,858,035
INFO 2026-06-08 09:04:27 MarkDuplicates Tracking 1016441 as yet unmatched pairs. 11554 records in RAM.
INFO 2026-06-08 09:04:28 MarkDuplicates Read 278,000,000 records. Elapsed time: 00:09:49s. Time for last 1,000,000: 1s. Last read position: chr8:143,865,900
INFO 2026-06-08 09:04:28 MarkDuplicates Tracking 1015008 as yet unmatched pairs. 10120 records in RAM.
INFO 2026-06-08 09:04:29 MarkDuplicates Read 279,000,000 records. Elapsed time: 00:09:50s. Time for last 1,000,000: 1s. Last read position: chr8:143,929,489
INFO 2026-06-08 09:04:29 MarkDuplicates Tracking 1012823 as yet unmatched pairs. 7932 records in RAM.
INFO 2026-06-08 09:04:31 MarkDuplicates Read 280,000,000 records. Elapsed time: 00:09:52s. Time for last 1,000,000: 1s. Last read position: chr8:144,317,813
INFO 2026-06-08 09:04:31 MarkDuplicates Tracking 1008190 as yet unmatched pairs. 3296 records in RAM.
INFO 2026-06-08 09:04:33 MarkDuplicates Read 281,000,000 records. Elapsed time: 00:09:54s. Time for last 1,000,000: 2s. Last read position: chr9:2,039,588
INFO 2026-06-08 09:04:33 MarkDuplicates Tracking 1004831 as yet unmatched pairs. 59851 records in RAM.
INFO 2026-06-08 09:04:35 MarkDuplicates Read 282,000,000 records. Elapsed time: 00:09:56s. Time for last 1,000,000: 1s. Last read position: chr9:14,307,387
INFO 2026-06-08 09:04:35 MarkDuplicates Tracking 1006155 as yet unmatched pairs. 61157 records in RAM.
INFO 2026-06-08 09:04:36 MarkDuplicates Read 283,000,000 records. Elapsed time: 00:09:57s. Time for last 1,000,000: 1s. Last read position: chr9:33,166,889
INFO 2026-06-08 09:04:36 MarkDuplicates Tracking 1000681 as yet unmatched pairs. 55666 records in RAM.
INFO 2026-06-08 09:04:38 MarkDuplicates Read 284,000,000 records. Elapsed time: 00:09:59s. Time for last 1,000,000: 1s. Last read position: chr9:35,400,399
INFO 2026-06-08 09:04:38 MarkDuplicates Tracking 996243 as yet unmatched pairs. 51227 records in RAM.
INFO 2026-06-08 09:04:40 MarkDuplicates Read 285,000,000 records. Elapsed time: 00:10:00s. Time for last 1,000,000: 1s. Last read position: chr9:37,442,011
INFO 2026-06-08 09:04:40 MarkDuplicates Tracking 992850 as yet unmatched pairs. 47821 records in RAM.
INFO 2026-06-08 09:04:41 MarkDuplicates Read 286,000,000 records. Elapsed time: 00:10:02s. Time for last 1,000,000: 1s. Last read position: chr9:73,169,053
INFO 2026-06-08 09:04:41 MarkDuplicates Tracking 995346 as yet unmatched pairs. 50296 records in RAM.
INFO 2026-06-08 09:04:43 MarkDuplicates Read 287,000,000 records. Elapsed time: 00:10:04s. Time for last 1,000,000: 1s. Last read position: chr9:88,468,412
INFO 2026-06-08 09:04:43 MarkDuplicates Tracking 987674 as yet unmatched pairs. 42614 records in RAM.
INFO 2026-06-08 09:04:45 MarkDuplicates Read 288,000,000 records. Elapsed time: 00:10:06s. Time for last 1,000,000: 2s. Last read position: chr9:95,456,294
INFO 2026-06-08 09:04:45 MarkDuplicates Tracking 984519 as yet unmatched pairs. 39449 records in RAM.
INFO 2026-06-08 09:04:48 MarkDuplicates Read 289,000,000 records. Elapsed time: 00:10:08s. Time for last 1,000,000: 2s. Last read position: chr9:105,335,648
INFO 2026-06-08 09:04:48 MarkDuplicates Tracking 982151 as yet unmatched pairs. 37072 records in RAM.
INFO 2026-06-08 09:04:49 MarkDuplicates Read 290,000,000 records. Elapsed time: 00:10:10s. Time for last 1,000,000: 1s. Last read position: chr9:112,227,476
INFO 2026-06-08 09:04:49 MarkDuplicates Tracking 979265 as yet unmatched pairs. 34181 records in RAM.
INFO 2026-06-08 09:04:51 MarkDuplicates Read 291,000,000 records. Elapsed time: 00:10:12s. Time for last 1,000,000: 1s. Last read position: chr9:115,046,525
INFO 2026-06-08 09:04:51 MarkDuplicates Tracking 978504 as yet unmatched pairs. 33406 records in RAM.
INFO 2026-06-08 09:04:53 MarkDuplicates Read 292,000,000 records. Elapsed time: 00:10:13s. Time for last 1,000,000: 1s. Last read position: chr9:121,313,943
INFO 2026-06-08 09:04:53 MarkDuplicates Tracking 974306 as yet unmatched pairs. 29207 records in RAM.
INFO 2026-06-08 09:04:54 MarkDuplicates Read 293,000,000 records. Elapsed time: 00:10:15s. Time for last 1,000,000: 1s. Last read position: chr9:125,321,471
INFO 2026-06-08 09:04:54 MarkDuplicates Tracking 970029 as yet unmatched pairs. 24920 records in RAM.
INFO 2026-06-08 09:04:56 MarkDuplicates Read 294,000,000 records. Elapsed time: 00:10:17s. Time for last 1,000,000: 1s. Last read position: chr9:127,894,627
INFO 2026-06-08 09:04:56 MarkDuplicates Tracking 967611 as yet unmatched pairs. 22490 records in RAM.
INFO 2026-06-08 09:04:58 MarkDuplicates Read 295,000,000 records. Elapsed time: 00:10:18s. Time for last 1,000,000: 1s. Last read position: chr9:128,735,350
INFO 2026-06-08 09:04:58 MarkDuplicates Tracking 964015 as yet unmatched pairs. 18892 records in RAM.
INFO 2026-06-08 09:04:59 MarkDuplicates Read 296,000,000 records. Elapsed time: 00:10:20s. Time for last 1,000,000: 1s. Last read position: chr9:130,880,085
INFO 2026-06-08 09:04:59 MarkDuplicates Tracking 963434 as yet unmatched pairs. 18309 records in RAM.
INFO 2026-06-08 09:05:01 MarkDuplicates Read 297,000,000 records. Elapsed time: 00:10:22s. Time for last 1,000,000: 1s. Last read position: chr9:133,019,494
INFO 2026-06-08 09:05:01 MarkDuplicates Tracking 957813 as yet unmatched pairs. 12671 records in RAM.
INFO 2026-06-08 09:05:02 MarkDuplicates Read 298,000,000 records. Elapsed time: 00:10:23s. Time for last 1,000,000: 1s. Last read position: chr9:134,763,692
INFO 2026-06-08 09:05:02 MarkDuplicates Tracking 955840 as yet unmatched pairs. 10685 records in RAM.
INFO 2026-06-08 09:05:04 MarkDuplicates Read 299,000,000 records. Elapsed time: 00:10:25s. Time for last 1,000,000: 1s. Last read position: chr9:136,476,811
INFO 2026-06-08 09:05:04 MarkDuplicates Tracking 953343 as yet unmatched pairs. 8179 records in RAM.
INFO 2026-06-08 09:05:06 MarkDuplicates Read 300,000,000 records. Elapsed time: 00:10:27s. Time for last 1,000,000: 1s. Last read position: chr9:137,040,580
INFO 2026-06-08 09:05:06 MarkDuplicates Tracking 948792 as yet unmatched pairs. 3616 records in RAM.
INFO 2026-06-08 09:05:08 MarkDuplicates Read 301,000,000 records. Elapsed time: 00:10:29s. Time for last 1,000,000: 2s. Last read position: chr10:999,083
INFO 2026-06-08 09:05:08 MarkDuplicates Tracking 944954 as yet unmatched pairs. 56222 records in RAM.
INFO 2026-06-08 09:05:10 MarkDuplicates Read 302,000,000 records. Elapsed time: 00:10:31s. Time for last 1,000,000: 1s. Last read position: chr10:12,089,005
INFO 2026-06-08 09:05:10 MarkDuplicates Tracking 942140 as yet unmatched pairs. 53401 records in RAM.
INFO 2026-06-08 09:05:12 MarkDuplicates Read 303,000,000 records. Elapsed time: 00:10:33s. Time for last 1,000,000: 1s. Last read position: chr10:22,316,494
INFO 2026-06-08 09:05:12 MarkDuplicates Tracking 939575 as yet unmatched pairs. 50830 records in RAM.
INFO 2026-06-08 09:05:14 MarkDuplicates Read 304,000,000 records. Elapsed time: 00:10:35s. Time for last 1,000,000: 2s. Last read position: chr10:31,843,512
INFO 2026-06-08 09:05:14 MarkDuplicates Tracking 936980 as yet unmatched pairs. 48223 records in RAM.
INFO 2026-06-08 09:05:17 MarkDuplicates Read 305,000,000 records. Elapsed time: 00:10:38s. Time for last 1,000,000: 3s. Last read position: chr10:35,044,778
INFO 2026-06-08 09:05:17 MarkDuplicates Tracking 934059 as yet unmatched pairs. 45294 records in RAM.
INFO 2026-06-08 09:05:19 MarkDuplicates Read 306,000,000 records. Elapsed time: 00:10:40s. Time for last 1,000,000: 1s. Last read position: chr10:46,011,021
INFO 2026-06-08 09:05:19 MarkDuplicates Tracking 934077 as yet unmatched pairs. 45300 records in RAM.
INFO 2026-06-08 09:05:20 MarkDuplicates Read 307,000,000 records. Elapsed time: 00:10:41s. Time for last 1,000,000: 1s. Last read position: chr10:59,664,167
INFO 2026-06-08 09:05:20 MarkDuplicates Tracking 929389 as yet unmatched pairs. 40603 records in RAM.
INFO 2026-06-08 09:05:22 MarkDuplicates Read 308,000,000 records. Elapsed time: 00:10:43s. Time for last 1,000,000: 1s. Last read position: chr10:69,103,966
INFO 2026-06-08 09:05:22 MarkDuplicates Tracking 929138 as yet unmatched pairs. 40342 records in RAM.
INFO 2026-06-08 09:05:23 MarkDuplicates Read 309,000,000 records. Elapsed time: 00:10:44s. Time for last 1,000,000: 1s. Last read position: chr10:72,274,928
INFO 2026-06-08 09:05:23 MarkDuplicates Tracking 931361 as yet unmatched pairs. 42558 records in RAM.
INFO 2026-06-08 09:05:25 MarkDuplicates Read 310,000,000 records. Elapsed time: 00:10:46s. Time for last 1,000,000: 1s. Last read position: chr10:74,525,349
INFO 2026-06-08 09:05:25 MarkDuplicates Tracking 920847 as yet unmatched pairs. 32041 records in RAM.
INFO 2026-06-08 09:05:27 MarkDuplicates Read 311,000,000 records. Elapsed time: 00:10:48s. Time for last 1,000,000: 1s. Last read position: chr10:79,557,359
INFO 2026-06-08 09:05:27 MarkDuplicates Tracking 938224 as yet unmatched pairs. 49416 records in RAM.
INFO 2026-06-08 09:05:28 MarkDuplicates Read 312,000,000 records. Elapsed time: 00:10:49s. Time for last 1,000,000: 1s. Last read position: chr10:79,559,936
INFO 2026-06-08 09:05:28 MarkDuplicates Tracking 914647 as yet unmatched pairs. 25839 records in RAM.
INFO 2026-06-08 09:05:30 MarkDuplicates Read 313,000,000 records. Elapsed time: 00:10:51s. Time for last 1,000,000: 1s. Last read position: chr10:80,155,750
INFO 2026-06-08 09:05:30 MarkDuplicates Tracking 913468 as yet unmatched pairs. 24656 records in RAM.
INFO 2026-06-08 09:05:32 MarkDuplicates Read 314,000,000 records. Elapsed time: 00:10:53s. Time for last 1,000,000: 1s. Last read position: chr10:88,941,328
INFO 2026-06-08 09:05:32 MarkDuplicates Tracking 911017 as yet unmatched pairs. 22197 records in RAM.
INFO 2026-06-08 09:05:34 MarkDuplicates Read 315,000,000 records. Elapsed time: 00:10:55s. Time for last 1,000,000: 1s. Last read position: chr10:95,687,685
INFO 2026-06-08 09:05:34 MarkDuplicates Tracking 907493 as yet unmatched pairs. 18668 records in RAM.
INFO 2026-06-08 09:05:36 MarkDuplicates Read 316,000,000 records. Elapsed time: 00:10:57s. Time for last 1,000,000: 2s. Last read position: chr10:100,354,607
INFO 2026-06-08 09:05:36 MarkDuplicates Tracking 904506 as yet unmatched pairs. 15675 records in RAM.
INFO 2026-06-08 09:05:38 MarkDuplicates Read 317,000,000 records. Elapsed time: 00:10:59s. Time for last 1,000,000: 2s. Last read position: chr10:102,644,736
INFO 2026-06-08 09:05:38 MarkDuplicates Tracking 901315 as yet unmatched pairs. 12478 records in RAM.
INFO 2026-06-08 09:05:39 MarkDuplicates Read 318,000,000 records. Elapsed time: 00:11:00s. Time for last 1,000,000: 1s. Last read position: chr10:113,040,072
INFO 2026-06-08 09:05:39 MarkDuplicates Tracking 898337 as yet unmatched pairs. 9493 records in RAM.
INFO 2026-06-08 09:05:41 MarkDuplicates Read 319,000,000 records. Elapsed time: 00:11:02s. Time for last 1,000,000: 1s. Last read position: chr10:121,479,872
INFO 2026-06-08 09:05:41 MarkDuplicates Tracking 895636 as yet unmatched pairs. 6786 records in RAM.
INFO 2026-06-08 09:05:43 MarkDuplicates Read 320,000,000 records. Elapsed time: 00:11:03s. Time for last 1,000,000: 1s. Last read position: chr10:122,603,114
INFO 2026-06-08 09:05:43 MarkDuplicates Tracking 896365 as yet unmatched pairs. 7508 records in RAM.
INFO 2026-06-08 09:05:44 MarkDuplicates Read 321,000,000 records. Elapsed time: 00:11:05s. Time for last 1,000,000: 1s. Last read position: chr10:127,012,252
INFO 2026-06-08 09:05:44 MarkDuplicates Tracking 891757 as yet unmatched pairs. 2888 records in RAM.
INFO 2026-06-08 09:05:47 MarkDuplicates Read 322,000,000 records. Elapsed time: 00:11:08s. Time for last 1,000,000: 2s. Last read position: chr11:290,481
INFO 2026-06-08 09:05:47 MarkDuplicates Tracking 891425 as yet unmatched pairs. 136559 records in RAM.
INFO 2026-06-08 09:05:48 MarkDuplicates Read 323,000,000 records. Elapsed time: 00:11:09s. Time for last 1,000,000: 1s. Last read position: chr11:320,577
INFO 2026-06-08 09:05:48 MarkDuplicates Tracking 900420 as yet unmatched pairs. 145554 records in RAM.
INFO 2026-06-08 09:05:50 MarkDuplicates Read 324,000,000 records. Elapsed time: 00:11:11s. Time for last 1,000,000: 1s. Last read position: chr11:726,709
INFO 2026-06-08 09:05:50 MarkDuplicates Tracking 882335 as yet unmatched pairs. 127459 records in RAM.
INFO 2026-06-08 09:05:52 MarkDuplicates Read 325,000,000 records. Elapsed time: 00:11:13s. Time for last 1,000,000: 1s. Last read position: chr11:1,226,864
INFO 2026-06-08 09:05:52 MarkDuplicates Tracking 882500 as yet unmatched pairs. 127616 records in RAM.
INFO 2026-06-08 09:05:54 MarkDuplicates Read 326,000,000 records. Elapsed time: 00:11:15s. Time for last 1,000,000: 1s. Last read position: chr11:1,241,794
INFO 2026-06-08 09:05:54 MarkDuplicates Tracking 877738 as yet unmatched pairs. 122845 records in RAM.
INFO 2026-06-08 09:05:55 MarkDuplicates Read 327,000,000 records. Elapsed time: 00:11:16s. Time for last 1,000,000: 1s. Last read position: chr11:1,243,483
INFO 2026-06-08 09:05:55 MarkDuplicates Tracking 879471 as yet unmatched pairs. 124578 records in RAM.
INFO 2026-06-08 09:05:57 MarkDuplicates Read 328,000,000 records. Elapsed time: 00:11:18s. Time for last 1,000,000: 1s. Last read position: chr11:1,244,391
INFO 2026-06-08 09:05:57 MarkDuplicates Tracking 882939 as yet unmatched pairs. 128046 records in RAM.
INFO 2026-06-08 09:05:59 MarkDuplicates Read 329,000,000 records. Elapsed time: 00:11:20s. Time for last 1,000,000: 1s. Last read position: chr11:1,245,356
INFO 2026-06-08 09:05:59 MarkDuplicates Tracking 880630 as yet unmatched pairs. 125735 records in RAM.
INFO 2026-06-08 09:06:01 MarkDuplicates Read 330,000,000 records. Elapsed time: 00:11:22s. Time for last 1,000,000: 1s. Last read position: chr11:1,246,883
INFO 2026-06-08 09:06:01 MarkDuplicates Tracking 882461 as yet unmatched pairs. 127566 records in RAM.
INFO 2026-06-08 09:06:03 MarkDuplicates Read 331,000,000 records. Elapsed time: 00:11:24s. Time for last 1,000,000: 2s. Last read position: chr11:1,247,912
INFO 2026-06-08 09:06:03 MarkDuplicates Tracking 878596 as yet unmatched pairs. 123695 records in RAM.
INFO 2026-06-08 09:06:04 MarkDuplicates Read 332,000,000 records. Elapsed time: 00:11:25s. Time for last 1,000,000: 1s. Last read position: chr11:1,248,916
INFO 2026-06-08 09:06:04 MarkDuplicates Tracking 876191 as yet unmatched pairs. 121290 records in RAM.
INFO 2026-06-08 09:06:06 MarkDuplicates Read 333,000,000 records. Elapsed time: 00:11:27s. Time for last 1,000,000: 1s. Last read position: chr11:1,250,234
INFO 2026-06-08 09:06:06 MarkDuplicates Tracking 871870 as yet unmatched pairs. 116967 records in RAM.
INFO 2026-06-08 09:06:08 MarkDuplicates Read 334,000,000 records. Elapsed time: 00:11:29s. Time for last 1,000,000: 1s. Last read position: chr11:1,254,757
INFO 2026-06-08 09:06:08 MarkDuplicates Tracking 864723 as yet unmatched pairs. 109820 records in RAM.
INFO 2026-06-08 09:06:09 MarkDuplicates Read 335,000,000 records. Elapsed time: 00:11:30s. Time for last 1,000,000: 1s. Last read position: chr11:1,754,083
INFO 2026-06-08 09:06:09 MarkDuplicates Tracking 874451 as yet unmatched pairs. 119548 records in RAM.
INFO 2026-06-08 09:06:11 MarkDuplicates Read 336,000,000 records. Elapsed time: 00:11:32s. Time for last 1,000,000: 1s. Last read position: chr11:2,390,423
INFO 2026-06-08 09:06:11 MarkDuplicates Tracking 861751 as yet unmatched pairs. 106846 records in RAM.
INFO 2026-06-08 09:06:13 MarkDuplicates Read 337,000,000 records. Elapsed time: 00:11:34s. Time for last 1,000,000: 1s. Last read position: chr11:5,679,953
INFO 2026-06-08 09:06:13 MarkDuplicates Tracking 853306 as yet unmatched pairs. 98393 records in RAM.
INFO 2026-06-08 09:06:15 MarkDuplicates Read 338,000,000 records. Elapsed time: 00:11:35s. Time for last 1,000,000: 1s. Last read position: chr11:8,684,745
INFO 2026-06-08 09:06:15 MarkDuplicates Tracking 853124 as yet unmatched pairs. 98204 records in RAM.
INFO 2026-06-08 09:06:16 MarkDuplicates Read 339,000,000 records. Elapsed time: 00:11:37s. Time for last 1,000,000: 1s. Last read position: chr11:10,801,045
INFO 2026-06-08 09:06:16 MarkDuplicates Tracking 847920 as yet unmatched pairs. 92991 records in RAM.
INFO 2026-06-08 09:06:18 MarkDuplicates Read 340,000,000 records. Elapsed time: 00:11:39s. Time for last 1,000,000: 1s. Last read position: chr11:17,074,437
INFO 2026-06-08 09:06:18 MarkDuplicates Tracking 848146 as yet unmatched pairs. 93208 records in RAM.
INFO 2026-06-08 09:06:20 MarkDuplicates Read 341,000,000 records. Elapsed time: 00:11:41s. Time for last 1,000,000: 2s. Last read position: chr11:32,091,277
INFO 2026-06-08 09:06:20 MarkDuplicates Tracking 842796 as yet unmatched pairs. 87848 records in RAM.
INFO 2026-06-08 09:06:22 MarkDuplicates Read 342,000,000 records. Elapsed time: 00:11:43s. Time for last 1,000,000: 1s. Last read position: chr11:35,180,385
INFO 2026-06-08 09:06:22 MarkDuplicates Tracking 840154 as yet unmatched pairs. 85194 records in RAM.
INFO 2026-06-08 09:06:24 MarkDuplicates Read 343,000,000 records. Elapsed time: 00:11:45s. Time for last 1,000,000: 1s. Last read position: chr11:46,382,619
INFO 2026-06-08 09:06:24 MarkDuplicates Tracking 836613 as yet unmatched pairs. 81633 records in RAM.
INFO 2026-06-08 09:06:26 MarkDuplicates Read 344,000,000 records. Elapsed time: 00:11:47s. Time for last 1,000,000: 1s. Last read position: chr11:47,767,141
INFO 2026-06-08 09:06:26 MarkDuplicates Tracking 833490 as yet unmatched pairs. 78508 records in RAM.
INFO 2026-06-08 09:06:28 MarkDuplicates Read 345,000,000 records. Elapsed time: 00:11:48s. Time for last 1,000,000: 1s. Last read position: chr11:57,599,878
INFO 2026-06-08 09:06:28 MarkDuplicates Tracking 837909 as yet unmatched pairs. 82927 records in RAM.
INFO 2026-06-08 09:06:29 MarkDuplicates Read 346,000,000 records. Elapsed time: 00:11:50s. Time for last 1,000,000: 1s. Last read position: chr11:60,089,755
INFO 2026-06-08 09:06:29 MarkDuplicates Tracking 827556 as yet unmatched pairs. 72573 records in RAM.
INFO 2026-06-08 09:06:31 MarkDuplicates Read 347,000,000 records. Elapsed time: 00:11:52s. Time for last 1,000,000: 1s. Last read position: chr11:61,964,756
INFO 2026-06-08 09:06:31 MarkDuplicates Tracking 828640 as yet unmatched pairs. 73654 records in RAM.
INFO 2026-06-08 09:06:33 MarkDuplicates Read 348,000,000 records. Elapsed time: 00:11:53s. Time for last 1,000,000: 1s. Last read position: chr11:62,524,522
INFO 2026-06-08 09:06:33 MarkDuplicates Tracking 824427 as yet unmatched pairs. 69431 records in RAM.
INFO 2026-06-08 09:06:34 MarkDuplicates Read 349,000,000 records. Elapsed time: 00:11:55s. Time for last 1,000,000: 1s. Last read position: chr11:62,559,795
INFO 2026-06-08 09:06:34 MarkDuplicates Tracking 823909 as yet unmatched pairs. 68911 records in RAM.
INFO 2026-06-08 09:06:36 MarkDuplicates Read 350,000,000 records. Elapsed time: 00:11:57s. Time for last 1,000,000: 1s. Last read position: chr11:62,787,415
INFO 2026-06-08 09:06:36 MarkDuplicates Tracking 816781 as yet unmatched pairs. 61772 records in RAM.
INFO 2026-06-08 09:06:38 MarkDuplicates Read 351,000,000 records. Elapsed time: 00:11:59s. Time for last 1,000,000: 1s. Last read position: chr11:64,245,249
INFO 2026-06-08 09:06:38 MarkDuplicates Tracking 815653 as yet unmatched pairs. 60633 records in RAM.
INFO 2026-06-08 09:06:39 MarkDuplicates Read 352,000,000 records. Elapsed time: 00:12:00s. Time for last 1,000,000: 1s. Last read position: chr11:65,087,931
INFO 2026-06-08 09:06:39 MarkDuplicates Tracking 810568 as yet unmatched pairs. 55547 records in RAM.
INFO 2026-06-08 09:06:41 MarkDuplicates Read 353,000,000 records. Elapsed time: 00:12:02s. Time for last 1,000,000: 1s. Last read position: chr11:65,546,887
INFO 2026-06-08 09:06:41 MarkDuplicates Tracking 807473 as yet unmatched pairs. 52408 records in RAM.
INFO 2026-06-08 09:06:43 MarkDuplicates Read 354,000,000 records. Elapsed time: 00:12:04s. Time for last 1,000,000: 1s. Last read position: chr11:65,661,989
INFO 2026-06-08 09:06:43 MarkDuplicates Tracking 805622 as yet unmatched pairs. 50553 records in RAM.
INFO 2026-06-08 09:06:45 MarkDuplicates Read 355,000,000 records. Elapsed time: 00:12:06s. Time for last 1,000,000: 2s. Last read position: chr11:66,437,220
INFO 2026-06-08 09:06:45 MarkDuplicates Tracking 800587 as yet unmatched pairs. 45515 records in RAM.
INFO 2026-06-08 09:06:47 MarkDuplicates Read 356,000,000 records. Elapsed time: 00:12:08s. Time for last 1,000,000: 2s. Last read position: chr11:67,309,445
INFO 2026-06-08 09:06:47 MarkDuplicates Tracking 797039 as yet unmatched pairs. 41966 records in RAM.
INFO 2026-06-08 09:06:49 MarkDuplicates Read 357,000,000 records. Elapsed time: 00:12:10s. Time for last 1,000,000: 1s. Last read position: chr11:68,074,821
INFO 2026-06-08 09:06:49 MarkDuplicates Tracking 793853 as yet unmatched pairs. 38777 records in RAM.
INFO 2026-06-08 09:06:51 MarkDuplicates Read 358,000,000 records. Elapsed time: 00:12:12s. Time for last 1,000,000: 1s. Last read position: chr11:70,348,239
INFO 2026-06-08 09:06:51 MarkDuplicates Tracking 790635 as yet unmatched pairs. 35549 records in RAM.
INFO 2026-06-08 09:06:52 MarkDuplicates Read 359,000,000 records. Elapsed time: 00:12:13s. Time for last 1,000,000: 1s. Last read position: chr11:72,229,513
INFO 2026-06-08 09:06:52 MarkDuplicates Tracking 788226 as yet unmatched pairs. 33136 records in RAM.
INFO 2026-06-08 09:06:54 MarkDuplicates Read 360,000,000 records. Elapsed time: 00:12:15s. Time for last 1,000,000: 1s. Last read position: chr11:74,250,931
INFO 2026-06-08 09:06:54 MarkDuplicates Tracking 784518 as yet unmatched pairs. 29426 records in RAM.
INFO 2026-06-08 09:06:56 MarkDuplicates Read 361,000,000 records. Elapsed time: 00:12:17s. Time for last 1,000,000: 1s. Last read position: chr11:77,629,822
INFO 2026-06-08 09:06:56 MarkDuplicates Tracking 781508 as yet unmatched pairs. 26411 records in RAM.
INFO 2026-06-08 09:06:57 MarkDuplicates Read 362,000,000 records. Elapsed time: 00:12:18s. Time for last 1,000,000: 1s. Last read position: chr11:88,337,520
INFO 2026-06-08 09:06:57 MarkDuplicates Tracking 780208 as yet unmatched pairs. 25106 records in RAM.
INFO 2026-06-08 09:06:59 MarkDuplicates Read 363,000,000 records. Elapsed time: 00:12:20s. Time for last 1,000,000: 1s. Last read position: chr11:102,205,956
INFO 2026-06-08 09:06:59 MarkDuplicates Tracking 782000 as yet unmatched pairs. 26893 records in RAM.
INFO 2026-06-08 09:07:01 MarkDuplicates Read 364,000,000 records. Elapsed time: 00:12:22s. Time for last 1,000,000: 1s. Last read position: chr11:111,860,607
INFO 2026-06-08 09:07:01 MarkDuplicates Tracking 773009 as yet unmatched pairs. 17891 records in RAM.
INFO 2026-06-08 09:07:03 MarkDuplicates Read 365,000,000 records. Elapsed time: 00:12:24s. Time for last 1,000,000: 2s. Last read position: chr11:116,862,280
INFO 2026-06-08 09:07:03 MarkDuplicates Tracking 770160 as yet unmatched pairs. 15033 records in RAM.
INFO 2026-06-08 09:07:05 MarkDuplicates Read 366,000,000 records. Elapsed time: 00:12:26s. Time for last 1,000,000: 2s. Last read position: chr11:118,581,346
INFO 2026-06-08 09:07:05 MarkDuplicates Tracking 769069 as yet unmatched pairs. 13938 records in RAM.
INFO 2026-06-08 09:07:07 MarkDuplicates Read 367,000,000 records. Elapsed time: 00:12:28s. Time for last 1,000,000: 2s. Last read position: chr11:119,100,727
INFO 2026-06-08 09:07:07 MarkDuplicates Tracking 764998 as yet unmatched pairs. 9855 records in RAM.
INFO 2026-06-08 09:07:09 MarkDuplicates Read 368,000,000 records. Elapsed time: 00:12:30s. Time for last 1,000,000: 2s. Last read position: chr11:123,059,893
INFO 2026-06-08 09:07:09 MarkDuplicates Tracking 764469 as yet unmatched pairs. 9319 records in RAM.
INFO 2026-06-08 09:07:11 MarkDuplicates Read 369,000,000 records. Elapsed time: 00:12:32s. Time for last 1,000,000: 2s. Last read position: chr11:128,810,736
INFO 2026-06-08 09:07:11 MarkDuplicates Tracking 759270 as yet unmatched pairs. 4117 records in RAM.
INFO 2026-06-08 09:07:13 MarkDuplicates Read 370,000,000 records. Elapsed time: 00:12:34s. Time for last 1,000,000: 1s. Last read position: chr11:134,288,808
INFO 2026-06-08 09:07:13 MarkDuplicates Tracking 757604 as yet unmatched pairs. 2441 records in RAM.
INFO 2026-06-08 09:07:16 MarkDuplicates Read 371,000,000 records. Elapsed time: 00:12:36s. Time for last 1,000,000: 2s. Last read position: chr12:2,585,869
INFO 2026-06-08 09:07:16 MarkDuplicates Tracking 753081 as yet unmatched pairs. 99999 records in RAM.
INFO 2026-06-08 09:07:18 MarkDuplicates Read 372,000,000 records. Elapsed time: 00:12:38s. Time for last 1,000,000: 1s. Last read position: chr12:6,110,887
INFO 2026-06-08 09:07:18 MarkDuplicates Tracking 751384 as yet unmatched pairs. 98292 records in RAM.
INFO 2026-06-08 09:07:19 MarkDuplicates Read 373,000,000 records. Elapsed time: 00:12:40s. Time for last 1,000,000: 1s. Last read position: chr12:6,652,306
INFO 2026-06-08 09:07:19 MarkDuplicates Tracking 747638 as yet unmatched pairs. 94545 records in RAM.
INFO 2026-06-08 09:07:21 MarkDuplicates Read 374,000,000 records. Elapsed time: 00:12:42s. Time for last 1,000,000: 1s. Last read position: chr12:6,968,521
INFO 2026-06-08 09:07:21 MarkDuplicates Tracking 745016 as yet unmatched pairs. 91918 records in RAM.
INFO 2026-06-08 09:07:23 MarkDuplicates Read 375,000,000 records. Elapsed time: 00:12:43s. Time for last 1,000,000: 1s. Last read position: chr12:8,050,616
INFO 2026-06-08 09:07:23 MarkDuplicates Tracking 741688 as yet unmatched pairs. 88585 records in RAM.
INFO 2026-06-08 09:07:24 MarkDuplicates Read 376,000,000 records. Elapsed time: 00:12:45s. Time for last 1,000,000: 1s. Last read position: chr12:9,113,449
INFO 2026-06-08 09:07:24 MarkDuplicates Tracking 744919 as yet unmatched pairs. 91808 records in RAM.
INFO 2026-06-08 09:07:26 MarkDuplicates Read 377,000,000 records. Elapsed time: 00:12:47s. Time for last 1,000,000: 2s. Last read position: chr12:12,908,831
INFO 2026-06-08 09:07:26 MarkDuplicates Tracking 738295 as yet unmatched pairs. 85176 records in RAM.
INFO 2026-06-08 09:07:29 MarkDuplicates Read 378,000,000 records. Elapsed time: 00:12:50s. Time for last 1,000,000: 2s. Last read position: chr12:19,255,152
INFO 2026-06-08 09:07:29 MarkDuplicates Tracking 733929 as yet unmatched pairs. 80810 records in RAM.
INFO 2026-06-08 09:07:31 MarkDuplicates Read 379,000,000 records. Elapsed time: 00:12:52s. Time for last 1,000,000: 1s. Last read position: chr12:31,089,058
INFO 2026-06-08 09:07:31 MarkDuplicates Tracking 731092 as yet unmatched pairs. 77964 records in RAM.
INFO 2026-06-08 09:07:33 MarkDuplicates Read 380,000,000 records. Elapsed time: 00:12:54s. Time for last 1,000,000: 1s. Last read position: chr12:40,367,668
INFO 2026-06-08 09:07:33 MarkDuplicates Tracking 729694 as yet unmatched pairs. 76560 records in RAM.
INFO 2026-06-08 09:07:34 MarkDuplicates Read 381,000,000 records. Elapsed time: 00:12:55s. Time for last 1,000,000: 1s. Last read position: chr12:48,149,481
INFO 2026-06-08 09:07:34 MarkDuplicates Tracking 726072 as yet unmatched pairs. 72936 records in RAM.
INFO 2026-06-08 09:07:36 MarkDuplicates Read 382,000,000 records. Elapsed time: 00:12:57s. Time for last 1,000,000: 1s. Last read position: chr12:49,127,828
INFO 2026-06-08 09:07:36 MarkDuplicates Tracking 723985 as yet unmatched pairs. 70845 records in RAM.
INFO 2026-06-08 09:07:38 MarkDuplicates Read 383,000,000 records. Elapsed time: 00:12:59s. Time for last 1,000,000: 1s. Last read position: chr12:50,177,085
INFO 2026-06-08 09:07:38 MarkDuplicates Tracking 720717 as yet unmatched pairs. 67574 records in RAM.
INFO 2026-06-08 09:07:39 MarkDuplicates Read 384,000,000 records. Elapsed time: 00:13:00s. Time for last 1,000,000: 1s. Last read position: chr12:52,056,020
INFO 2026-06-08 09:07:39 MarkDuplicates Tracking 718574 as yet unmatched pairs. 65420 records in RAM.
INFO 2026-06-08 09:07:41 MarkDuplicates Read 385,000,000 records. Elapsed time: 00:13:02s. Time for last 1,000,000: 1s. Last read position: chr12:53,060,711
INFO 2026-06-08 09:07:41 MarkDuplicates Tracking 715788 as yet unmatched pairs. 62630 records in RAM.
INFO 2026-06-08 09:07:43 MarkDuplicates Read 386,000,000 records. Elapsed time: 00:13:04s. Time for last 1,000,000: 1s. Last read position: chr12:53,482,075
INFO 2026-06-08 09:07:43 MarkDuplicates Tracking 711724 as yet unmatched pairs. 58552 records in RAM.
INFO 2026-06-08 09:07:44 MarkDuplicates Read 387,000,000 records. Elapsed time: 00:13:05s. Time for last 1,000,000: 1s. Last read position: chr12:54,401,402
INFO 2026-06-08 09:07:44 MarkDuplicates Tracking 709537 as yet unmatched pairs. 56360 records in RAM.
INFO 2026-06-08 09:07:46 MarkDuplicates Read 388,000,000 records. Elapsed time: 00:13:07s. Time for last 1,000,000: 1s. Last read position: chr12:56,106,988
INFO 2026-06-08 09:07:46 MarkDuplicates Tracking 707413 as yet unmatched pairs. 54232 records in RAM.
INFO 2026-06-08 09:07:48 MarkDuplicates Read 389,000,000 records. Elapsed time: 00:13:09s. Time for last 1,000,000: 1s. Last read position: chr12:56,478,023
INFO 2026-06-08 09:07:48 MarkDuplicates Tracking 703513 as yet unmatched pairs. 50332 records in RAM.
INFO 2026-06-08 09:07:50 MarkDuplicates Read 390,000,000 records. Elapsed time: 00:13:11s. Time for last 1,000,000: 2s. Last read position: chr12:57,091,193
INFO 2026-06-08 09:07:50 MarkDuplicates Tracking 701668 as yet unmatched pairs. 48485 records in RAM.
INFO 2026-06-08 09:07:52 MarkDuplicates Read 391,000,000 records. Elapsed time: 00:13:13s. Time for last 1,000,000: 2s. Last read position: chr12:57,106,293
INFO 2026-06-08 09:07:52 MarkDuplicates Tracking 704155 as yet unmatched pairs. 50971 records in RAM.
INFO 2026-06-08 09:07:54 MarkDuplicates Read 392,000,000 records. Elapsed time: 00:13:15s. Time for last 1,000,000: 1s. Last read position: chr12:57,205,441
INFO 2026-06-08 09:07:54 MarkDuplicates Tracking 695875 as yet unmatched pairs. 42689 records in RAM.
INFO 2026-06-08 09:07:56 MarkDuplicates Read 393,000,000 records. Elapsed time: 00:13:17s. Time for last 1,000,000: 1s. Last read position: chr12:57,758,699
INFO 2026-06-08 09:07:56 MarkDuplicates Tracking 692878 as yet unmatched pairs. 39683 records in RAM.
INFO 2026-06-08 09:07:58 MarkDuplicates Read 394,000,000 records. Elapsed time: 00:13:19s. Time for last 1,000,000: 1s. Last read position: chr12:67,306,257
INFO 2026-06-08 09:07:58 MarkDuplicates Tracking 689797 as yet unmatched pairs. 36592 records in RAM.
INFO 2026-06-08 09:07:59 MarkDuplicates Read 395,000,000 records. Elapsed time: 00:13:20s. Time for last 1,000,000: 1s. Last read position: chr12:76,030,576
INFO 2026-06-08 09:07:59 MarkDuplicates Tracking 687605 as yet unmatched pairs. 34394 records in RAM.
INFO 2026-06-08 09:08:01 MarkDuplicates Read 396,000,000 records. Elapsed time: 00:13:22s. Time for last 1,000,000: 1s. Last read position: chr12:91,158,350
INFO 2026-06-08 09:08:01 MarkDuplicates Tracking 685392 as yet unmatched pairs. 32178 records in RAM.
INFO 2026-06-08 09:08:03 MarkDuplicates Read 397,000,000 records. Elapsed time: 00:13:23s. Time for last 1,000,000: 1s. Last read position: chr12:98,544,285
INFO 2026-06-08 09:08:03 MarkDuplicates Tracking 682032 as yet unmatched pairs. 28817 records in RAM.
INFO 2026-06-08 09:08:04 MarkDuplicates Read 398,000,000 records. Elapsed time: 00:13:25s. Time for last 1,000,000: 1s. Last read position: chr12:104,327,528
INFO 2026-06-08 09:08:04 MarkDuplicates Tracking 679261 as yet unmatched pairs. 26042 records in RAM.
INFO 2026-06-08 09:08:06 MarkDuplicates Read 399,000,000 records. Elapsed time: 00:13:27s. Time for last 1,000,000: 1s. Last read position: chr12:109,503,084
INFO 2026-06-08 09:08:06 MarkDuplicates Tracking 676207 as yet unmatched pairs. 22965 records in RAM.
INFO 2026-06-08 09:08:08 MarkDuplicates Read 400,000,000 records. Elapsed time: 00:13:29s. Time for last 1,000,000: 1s. Last read position: chr12:111,799,931
INFO 2026-06-08 09:08:08 MarkDuplicates Tracking 675491 as yet unmatched pairs. 22247 records in RAM.
INFO 2026-06-08 09:08:09 MarkDuplicates Read 401,000,000 records. Elapsed time: 00:13:30s. Time for last 1,000,000: 1s. Last read position: chr12:113,269,821
INFO 2026-06-08 09:08:09 MarkDuplicates Tracking 671670 as yet unmatched pairs. 18417 records in RAM.
INFO 2026-06-08 09:08:11 MarkDuplicates Read 402,000,000 records. Elapsed time: 00:13:32s. Time for last 1,000,000: 1s. Last read position: chr12:120,137,298
INFO 2026-06-08 09:08:11 MarkDuplicates Tracking 667940 as yet unmatched pairs. 14661 records in RAM.
INFO 2026-06-08 09:08:14 MarkDuplicates Read 403,000,000 records. Elapsed time: 00:13:35s. Time for last 1,000,000: 3s. Last read position: chr12:121,308,596
INFO 2026-06-08 09:08:14 MarkDuplicates Tracking 664712 as yet unmatched pairs. 11414 records in RAM.
INFO 2026-06-08 09:08:16 MarkDuplicates Read 404,000,000 records. Elapsed time: 00:13:37s. Time for last 1,000,000: 1s. Last read position: chr12:123,005,256
INFO 2026-06-08 09:08:16 MarkDuplicates Tracking 661699 as yet unmatched pairs. 8399 records in RAM.
INFO 2026-06-08 09:08:18 MarkDuplicates Read 405,000,000 records. Elapsed time: 00:13:39s. Time for last 1,000,000: 1s. Last read position: chr12:124,374,383
INFO 2026-06-08 09:08:18 MarkDuplicates Tracking 658843 as yet unmatched pairs. 5542 records in RAM.
INFO 2026-06-08 09:08:20 MarkDuplicates Read 406,000,000 records. Elapsed time: 00:13:41s. Time for last 1,000,000: 1s. Last read position: chr12:132,509,377
INFO 2026-06-08 09:08:20 MarkDuplicates Tracking 656375 as yet unmatched pairs. 3072 records in RAM.
INFO 2026-06-08 09:08:22 MarkDuplicates Read 407,000,000 records. Elapsed time: 00:13:43s. Time for last 1,000,000: 1s. Last read position: chr13:20,796,837
INFO 2026-06-08 09:08:22 MarkDuplicates Tracking 652500 as yet unmatched pairs. 23391 records in RAM.
INFO 2026-06-08 09:08:23 MarkDuplicates Read 408,000,000 records. Elapsed time: 00:13:44s. Time for last 1,000,000: 1s. Last read position: chr13:30,659,379
INFO 2026-06-08 09:08:23 MarkDuplicates Tracking 649598 as yet unmatched pairs. 20484 records in RAM.
INFO 2026-06-08 09:08:25 MarkDuplicates Read 409,000,000 records. Elapsed time: 00:13:46s. Time for last 1,000,000: 1s. Last read position: chr13:41,457,626
INFO 2026-06-08 09:08:25 MarkDuplicates Tracking 647074 as yet unmatched pairs. 17944 records in RAM.
INFO 2026-06-08 09:08:27 MarkDuplicates Read 410,000,000 records. Elapsed time: 00:13:48s. Time for last 1,000,000: 1s. Last read position: chr13:48,233,375
INFO 2026-06-08 09:08:27 MarkDuplicates Tracking 647776 as yet unmatched pairs. 18643 records in RAM.
INFO 2026-06-08 09:08:28 MarkDuplicates Read 411,000,000 records. Elapsed time: 00:13:49s. Time for last 1,000,000: 1s. Last read position: chr13:75,804,467
INFO 2026-06-08 09:08:28 MarkDuplicates Tracking 641918 as yet unmatched pairs. 12769 records in RAM.
INFO 2026-06-08 09:08:30 MarkDuplicates Read 412,000,000 records. Elapsed time: 00:13:51s. Time for last 1,000,000: 1s. Last read position: chr13:98,409,337
INFO 2026-06-08 09:08:30 MarkDuplicates Tracking 639357 as yet unmatched pairs. 10199 records in RAM.
INFO 2026-06-08 09:08:32 MarkDuplicates Read 413,000,000 records. Elapsed time: 00:13:52s. Time for last 1,000,000: 1s. Last read position: chr13:110,167,219
INFO 2026-06-08 09:08:32 MarkDuplicates Tracking 636747 as yet unmatched pairs. 7581 records in RAM.
INFO 2026-06-08 09:08:33 MarkDuplicates Read 414,000,000 records. Elapsed time: 00:13:54s. Time for last 1,000,000: 1s. Last read position: chr13:111,283,221
INFO 2026-06-08 09:08:33 MarkDuplicates Tracking 632720 as yet unmatched pairs. 3549 records in RAM.
INFO 2026-06-08 09:08:36 MarkDuplicates Read 415,000,000 records. Elapsed time: 00:13:56s. Time for last 1,000,000: 2s. Last read position: chr14:20,311,581
INFO 2026-06-08 09:08:36 MarkDuplicates Tracking 629654 as yet unmatched pairs. 53881 records in RAM.
INFO 2026-06-08 09:08:37 MarkDuplicates Read 416,000,000 records. Elapsed time: 00:13:58s. Time for last 1,000,000: 1s. Last read position: chr14:21,501,799
INFO 2026-06-08 09:08:37 MarkDuplicates Tracking 626493 as yet unmatched pairs. 50714 records in RAM.
INFO 2026-06-08 09:08:39 MarkDuplicates Read 417,000,000 records. Elapsed time: 00:14:00s. Time for last 1,000,000: 1s. Last read position: chr14:23,359,974
INFO 2026-06-08 09:08:39 MarkDuplicates Tracking 623547 as yet unmatched pairs. 47766 records in RAM.
INFO 2026-06-08 09:08:41 MarkDuplicates Read 418,000,000 records. Elapsed time: 00:14:02s. Time for last 1,000,000: 1s. Last read position: chr14:24,376,458
INFO 2026-06-08 09:08:41 MarkDuplicates Tracking 620983 as yet unmatched pairs. 45201 records in RAM.
INFO 2026-06-08 09:08:42 MarkDuplicates Read 419,000,000 records. Elapsed time: 00:14:03s. Time for last 1,000,000: 1s. Last read position: chr14:35,403,258
INFO 2026-06-08 09:08:42 MarkDuplicates Tracking 620263 as yet unmatched pairs. 44475 records in RAM.
INFO 2026-06-08 09:08:44 MarkDuplicates Read 420,000,000 records. Elapsed time: 00:14:05s. Time for last 1,000,000: 1s. Last read position: chr14:49,780,744
INFO 2026-06-08 09:08:44 MarkDuplicates Tracking 615148 as yet unmatched pairs. 39331 records in RAM.
INFO 2026-06-08 09:08:46 MarkDuplicates Read 421,000,000 records. Elapsed time: 00:14:07s. Time for last 1,000,000: 1s. Last read position: chr14:55,229,571
INFO 2026-06-08 09:08:46 MarkDuplicates Tracking 611876 as yet unmatched pairs. 36048 records in RAM.
INFO 2026-06-08 09:08:48 MarkDuplicates Read 422,000,000 records. Elapsed time: 00:14:09s. Time for last 1,000,000: 2s. Last read position: chr14:63,539,587
INFO 2026-06-08 09:08:48 MarkDuplicates Tracking 609662 as yet unmatched pairs. 33822 records in RAM.
INFO 2026-06-08 09:08:50 MarkDuplicates Read 423,000,000 records. Elapsed time: 00:14:11s. Time for last 1,000,000: 1s. Last read position: chr14:67,593,898
INFO 2026-06-08 09:08:50 MarkDuplicates Tracking 606558 as yet unmatched pairs. 30715 records in RAM.
INFO 2026-06-08 09:08:52 MarkDuplicates Read 424,000,000 records. Elapsed time: 00:14:13s. Time for last 1,000,000: 1s. Last read position: chr14:70,977,094
INFO 2026-06-08 09:08:52 MarkDuplicates Tracking 603778 as yet unmatched pairs. 27930 records in RAM.
INFO 2026-06-08 09:08:53 MarkDuplicates Read 425,000,000 records. Elapsed time: 00:14:14s. Time for last 1,000,000: 1s. Last read position: chr14:74,484,483
INFO 2026-06-08 09:08:53 MarkDuplicates Tracking 608141 as yet unmatched pairs. 32287 records in RAM.
INFO 2026-06-08 09:08:55 MarkDuplicates Read 426,000,000 records. Elapsed time: 00:14:16s. Time for last 1,000,000: 1s. Last read position: chr14:75,278,856
INFO 2026-06-08 09:08:55 MarkDuplicates Tracking 598106 as yet unmatched pairs. 22240 records in RAM.
INFO 2026-06-08 09:08:57 MarkDuplicates Read 427,000,000 records. Elapsed time: 00:14:18s. Time for last 1,000,000: 1s. Last read position: chr14:81,489,172
INFO 2026-06-08 09:08:57 MarkDuplicates Tracking 595185 as yet unmatched pairs. 19309 records in RAM.
INFO 2026-06-08 09:08:58 MarkDuplicates Read 428,000,000 records. Elapsed time: 00:14:19s. Time for last 1,000,000: 1s. Last read position: chr14:92,839,363
INFO 2026-06-08 09:08:58 MarkDuplicates Tracking 592237 as yet unmatched pairs. 16349 records in RAM.
INFO 2026-06-08 09:09:00 MarkDuplicates Read 429,000,000 records. Elapsed time: 00:14:21s. Time for last 1,000,000: 1s. Last read position: chr14:99,398,814
INFO 2026-06-08 09:09:00 MarkDuplicates Tracking 589538 as yet unmatched pairs. 13648 records in RAM.
INFO 2026-06-08 09:09:02 MarkDuplicates Read 430,000,000 records. Elapsed time: 00:14:23s. Time for last 1,000,000: 1s. Last read position: chr14:102,050,434
INFO 2026-06-08 09:09:02 MarkDuplicates Tracking 586659 as yet unmatched pairs. 10767 records in RAM.
INFO 2026-06-08 09:09:04 MarkDuplicates Read 431,000,000 records. Elapsed time: 00:14:25s. Time for last 1,000,000: 1s. Last read position: chr14:103,754,207
INFO 2026-06-08 09:09:04 MarkDuplicates Tracking 583378 as yet unmatched pairs. 7480 records in RAM.
INFO 2026-06-08 09:09:05 MarkDuplicates Read 432,000,000 records. Elapsed time: 00:14:26s. Time for last 1,000,000: 1s. Last read position: chr14:104,949,546
INFO 2026-06-08 09:09:05 MarkDuplicates Tracking 581805 as yet unmatched pairs. 5902 records in RAM.
INFO 2026-06-08 09:09:07 MarkDuplicates Read 433,000,000 records. Elapsed time: 00:14:28s. Time for last 1,000,000: 1s. Last read position: chr14:105,708,568
INFO 2026-06-08 09:09:07 MarkDuplicates Tracking 578169 as yet unmatched pairs. 2265 records in RAM.
INFO 2026-06-08 09:09:09 MarkDuplicates Read 434,000,000 records. Elapsed time: 00:14:30s. Time for last 1,000,000: 2s. Last read position: chr15:28,229,728
INFO 2026-06-08 09:09:09 MarkDuplicates Tracking 574555 as yet unmatched pairs. 44976 records in RAM.
INFO 2026-06-08 09:09:11 MarkDuplicates Read 435,000,000 records. Elapsed time: 00:14:32s. Time for last 1,000,000: 1s. Last read position: chr15:36,892,366
INFO 2026-06-08 09:09:11 MarkDuplicates Tracking 572293 as yet unmatched pairs. 42714 records in RAM.
INFO 2026-06-08 09:09:13 MarkDuplicates Read 436,000,000 records. Elapsed time: 00:14:34s. Time for last 1,000,000: 1s. Last read position: chr15:40,982,861
INFO 2026-06-08 09:09:13 MarkDuplicates Tracking 569367 as yet unmatched pairs. 39788 records in RAM.
INFO 2026-06-08 09:09:15 MarkDuplicates Read 437,000,000 records. Elapsed time: 00:14:36s. Time for last 1,000,000: 2s. Last read position: chr15:42,777,041
INFO 2026-06-08 09:09:15 MarkDuplicates Tracking 566621 as yet unmatched pairs. 37041 records in RAM.
INFO 2026-06-08 09:09:17 MarkDuplicates Read 438,000,000 records. Elapsed time: 00:14:38s. Time for last 1,000,000: 1s. Last read position: chr15:44,598,802
INFO 2026-06-08 09:09:17 MarkDuplicates Tracking 564216 as yet unmatched pairs. 34632 records in RAM.
INFO 2026-06-08 09:09:19 MarkDuplicates Read 439,000,000 records. Elapsed time: 00:14:40s. Time for last 1,000,000: 1s. Last read position: chr15:50,614,157
INFO 2026-06-08 09:09:19 MarkDuplicates Tracking 561201 as yet unmatched pairs. 31612 records in RAM.
INFO 2026-06-08 09:09:20 MarkDuplicates Read 440,000,000 records. Elapsed time: 00:14:41s. Time for last 1,000,000: 1s. Last read position: chr15:57,618,146
INFO 2026-06-08 09:09:20 MarkDuplicates Tracking 558473 as yet unmatched pairs. 28882 records in RAM.
INFO 2026-06-08 09:09:22 MarkDuplicates Read 441,000,000 records. Elapsed time: 00:14:43s. Time for last 1,000,000: 1s. Last read position: chr15:63,504,816
INFO 2026-06-08 09:09:22 MarkDuplicates Tracking 556439 as yet unmatched pairs. 26846 records in RAM.
INFO 2026-06-08 09:09:24 MarkDuplicates Read 442,000,000 records. Elapsed time: 00:14:45s. Time for last 1,000,000: 1s. Last read position: chr15:66,311,808
INFO 2026-06-08 09:09:24 MarkDuplicates Tracking 552885 as yet unmatched pairs. 23285 records in RAM.
INFO 2026-06-08 09:09:25 MarkDuplicates Read 443,000,000 records. Elapsed time: 00:14:46s. Time for last 1,000,000: 1s. Last read position: chr15:71,862,468
INFO 2026-06-08 09:09:25 MarkDuplicates Tracking 550027 as yet unmatched pairs. 20423 records in RAM.
INFO 2026-06-08 09:09:27 MarkDuplicates Read 444,000,000 records. Elapsed time: 00:14:48s. Time for last 1,000,000: 1s. Last read position: chr15:74,023,304
INFO 2026-06-08 09:09:27 MarkDuplicates Tracking 551124 as yet unmatched pairs. 21513 records in RAM.
INFO 2026-06-08 09:09:29 MarkDuplicates Read 445,000,000 records. Elapsed time: 00:14:49s. Time for last 1,000,000: 1s. Last read position: chr15:75,361,641
INFO 2026-06-08 09:09:29 MarkDuplicates Tracking 545563 as yet unmatched pairs. 15952 records in RAM.
INFO 2026-06-08 09:09:30 MarkDuplicates Read 446,000,000 records. Elapsed time: 00:14:51s. Time for last 1,000,000: 1s. Last read position: chr15:78,894,201
INFO 2026-06-08 09:09:30 MarkDuplicates Tracking 542019 as yet unmatched pairs. 12408 records in RAM.
INFO 2026-06-08 09:09:32 MarkDuplicates Read 447,000,000 records. Elapsed time: 00:14:53s. Time for last 1,000,000: 1s. Last read position: chr15:84,782,977
INFO 2026-06-08 09:09:32 MarkDuplicates Tracking 538225 as yet unmatched pairs. 8610 records in RAM.
INFO 2026-06-08 09:09:34 MarkDuplicates Read 448,000,000 records. Elapsed time: 00:14:55s. Time for last 1,000,000: 1s. Last read position: chr15:88,907,254
INFO 2026-06-08 09:09:34 MarkDuplicates Tracking 536805 as yet unmatched pairs. 7189 records in RAM.
INFO 2026-06-08 09:09:35 MarkDuplicates Read 449,000,000 records. Elapsed time: 00:14:56s. Time for last 1,000,000: 1s. Last read position: chr15:90,607,438
INFO 2026-06-08 09:09:35 MarkDuplicates Tracking 532860 as yet unmatched pairs. 3237 records in RAM.
INFO 2026-06-08 09:09:37 MarkDuplicates Read 450,000,000 records. Elapsed time: 00:14:58s. Time for last 1,000,000: 1s. Last read position: chr15:101,972,566
INFO 2026-06-08 09:09:37 MarkDuplicates Tracking 529850 as yet unmatched pairs. 225 records in RAM.
INFO 2026-06-08 09:09:40 MarkDuplicates Read 451,000,000 records. Elapsed time: 00:15:01s. Time for last 1,000,000: 3s. Last read position: chr16:715,939
INFO 2026-06-08 09:09:40 MarkDuplicates Tracking 526591 as yet unmatched pairs. 74307 records in RAM.
INFO 2026-06-08 09:09:42 MarkDuplicates Read 452,000,000 records. Elapsed time: 00:15:03s. Time for last 1,000,000: 2s. Last read position: chr16:1,771,082
INFO 2026-06-08 09:09:42 MarkDuplicates Tracking 523821 as yet unmatched pairs. 71537 records in RAM.
INFO 2026-06-08 09:09:44 MarkDuplicates Read 453,000,000 records. Elapsed time: 00:15:05s. Time for last 1,000,000: 1s. Last read position: chr16:2,176,369
INFO 2026-06-08 09:09:44 MarkDuplicates Tracking 520092 as yet unmatched pairs. 67808 records in RAM.
INFO 2026-06-08 09:09:46 MarkDuplicates Read 454,000,000 records. Elapsed time: 00:15:07s. Time for last 1,000,000: 1s. Last read position: chr16:2,770,453
INFO 2026-06-08 09:09:46 MarkDuplicates Tracking 519544 as yet unmatched pairs. 67260 records in RAM.
INFO 2026-06-08 09:09:47 MarkDuplicates Read 455,000,000 records. Elapsed time: 00:15:08s. Time for last 1,000,000: 1s. Last read position: chr16:4,364,377
INFO 2026-06-08 09:09:47 MarkDuplicates Tracking 513479 as yet unmatched pairs. 61186 records in RAM.
INFO 2026-06-08 09:09:49 MarkDuplicates Read 456,000,000 records. Elapsed time: 00:15:10s. Time for last 1,000,000: 1s. Last read position: chr16:10,538,043
INFO 2026-06-08 09:09:49 MarkDuplicates Tracking 511897 as yet unmatched pairs. 59603 records in RAM.
INFO 2026-06-08 09:09:51 MarkDuplicates Read 457,000,000 records. Elapsed time: 00:15:12s. Time for last 1,000,000: 1s. Last read position: chr16:14,833,872
INFO 2026-06-08 09:09:51 MarkDuplicates Tracking 507200 as yet unmatched pairs. 54902 records in RAM.
INFO 2026-06-08 09:09:52 MarkDuplicates Read 458,000,000 records. Elapsed time: 00:15:13s. Time for last 1,000,000: 1s. Last read position: chr16:15,757,968
INFO 2026-06-08 09:09:52 MarkDuplicates Tracking 505891 as yet unmatched pairs. 53591 records in RAM.
INFO 2026-06-08 09:09:53 MarkDuplicates Read 459,000,000 records. Elapsed time: 00:15:14s. Time for last 1,000,000: 1s. Last read position: chr16:18,341,749
INFO 2026-06-08 09:09:53 MarkDuplicates Tracking 504456 as yet unmatched pairs. 52156 records in RAM.
INFO 2026-06-08 09:09:55 MarkDuplicates Read 460,000,000 records. Elapsed time: 00:15:16s. Time for last 1,000,000: 1s. Last read position: chr16:19,115,285
INFO 2026-06-08 09:09:55 MarkDuplicates Tracking 502590 as yet unmatched pairs. 50289 records in RAM.
INFO 2026-06-08 09:09:56 MarkDuplicates Read 461,000,000 records. Elapsed time: 00:15:17s. Time for last 1,000,000: 1s. Last read position: chr16:21,836,380
INFO 2026-06-08 09:09:56 MarkDuplicates Tracking 500266 as yet unmatched pairs. 47963 records in RAM.
INFO 2026-06-08 09:09:58 MarkDuplicates Read 462,000,000 records. Elapsed time: 00:15:19s. Time for last 1,000,000: 1s. Last read position: chr16:23,413,533
INFO 2026-06-08 09:09:58 MarkDuplicates Tracking 499235 as yet unmatched pairs. 46927 records in RAM.
INFO 2026-06-08 09:10:00 MarkDuplicates Read 463,000,000 records. Elapsed time: 00:15:21s. Time for last 1,000,000: 2s. Last read position: chr16:28,495,323
INFO 2026-06-08 09:10:00 MarkDuplicates Tracking 496643 as yet unmatched pairs. 44330 records in RAM.
INFO 2026-06-08 09:10:01 MarkDuplicates Read 464,000,000 records. Elapsed time: 00:15:22s. Time for last 1,000,000: 1s. Last read position: chr16:29,454,211
INFO 2026-06-08 09:10:01 MarkDuplicates Tracking 495004 as yet unmatched pairs. 42691 records in RAM.
INFO 2026-06-08 09:10:03 MarkDuplicates Read 465,000,000 records. Elapsed time: 00:15:24s. Time for last 1,000,000: 1s. Last read position: chr16:29,986,366
INFO 2026-06-08 09:10:03 MarkDuplicates Tracking 491751 as yet unmatched pairs. 39438 records in RAM.
INFO 2026-06-08 09:10:05 MarkDuplicates Read 466,000,000 records. Elapsed time: 00:15:26s. Time for last 1,000,000: 2s. Last read position: chr16:30,444,762
INFO 2026-06-08 09:10:05 MarkDuplicates Tracking 489439 as yet unmatched pairs. 37126 records in RAM.
INFO 2026-06-08 09:10:07 MarkDuplicates Read 467,000,000 records. Elapsed time: 00:15:28s. Time for last 1,000,000: 1s. Last read position: chr16:31,093,333
INFO 2026-06-08 09:10:07 MarkDuplicates Tracking 487836 as yet unmatched pairs. 35523 records in RAM.
INFO 2026-06-08 09:10:09 MarkDuplicates Read 468,000,000 records. Elapsed time: 00:15:29s. Time for last 1,000,000: 1s. Last read position: chr16:46,681,416
INFO 2026-06-08 09:10:09 MarkDuplicates Tracking 483594 as yet unmatched pairs. 31280 records in RAM.
INFO 2026-06-08 09:10:10 MarkDuplicates Read 469,000,000 records. Elapsed time: 00:15:31s. Time for last 1,000,000: 1s. Last read position: chr16:55,479,466
INFO 2026-06-08 09:10:10 MarkDuplicates Tracking 482904 as yet unmatched pairs. 30577 records in RAM.
INFO 2026-06-08 09:10:12 MarkDuplicates Read 470,000,000 records. Elapsed time: 00:15:33s. Time for last 1,000,000: 1s. Last read position: chr16:57,081,164
INFO 2026-06-08 09:10:12 MarkDuplicates Tracking 477645 as yet unmatched pairs. 25310 records in RAM.
INFO 2026-06-08 09:10:14 MarkDuplicates Read 471,000,000 records. Elapsed time: 00:15:34s. Time for last 1,000,000: 1s. Last read position: chr16:64,988,291
INFO 2026-06-08 09:10:14 MarkDuplicates Tracking 475994 as yet unmatched pairs. 23659 records in RAM.
INFO 2026-06-08 09:10:15 MarkDuplicates Read 472,000,000 records. Elapsed time: 00:15:36s. Time for last 1,000,000: 1s. Last read position: chr16:67,546,374
INFO 2026-06-08 09:10:15 MarkDuplicates Tracking 471376 as yet unmatched pairs. 19037 records in RAM.
INFO 2026-06-08 09:10:17 MarkDuplicates Read 473,000,000 records. Elapsed time: 00:15:38s. Time for last 1,000,000: 1s. Last read position: chr16:69,316,340
INFO 2026-06-08 09:10:17 MarkDuplicates Tracking 468178 as yet unmatched pairs. 15836 records in RAM.
INFO 2026-06-08 09:10:19 MarkDuplicates Read 474,000,000 records. Elapsed time: 00:15:40s. Time for last 1,000,000: 1s. Last read position: chr16:71,667,229
INFO 2026-06-08 09:10:19 MarkDuplicates Tracking 465188 as yet unmatched pairs. 12844 records in RAM.
INFO 2026-06-08 09:10:20 MarkDuplicates Read 475,000,000 records. Elapsed time: 00:15:41s. Time for last 1,000,000: 1s. Last read position: chr16:74,360,759
INFO 2026-06-08 09:10:20 MarkDuplicates Tracking 463364 as yet unmatched pairs. 11015 records in RAM.
INFO 2026-06-08 09:10:22 MarkDuplicates Read 476,000,000 records. Elapsed time: 00:15:43s. Time for last 1,000,000: 1s. Last read position: chr16:84,181,115
INFO 2026-06-08 09:10:22 MarkDuplicates Tracking 460358 as yet unmatched pairs. 8008 records in RAM.
INFO 2026-06-08 09:10:24 MarkDuplicates Read 477,000,000 records. Elapsed time: 00:15:45s. Time for last 1,000,000: 2s. Last read position: chr16:88,647,170
INFO 2026-06-08 09:10:24 MarkDuplicates Tracking 458325 as yet unmatched pairs. 5973 records in RAM.
INFO 2026-06-08 09:10:27 MarkDuplicates Read 478,000,000 records. Elapsed time: 00:15:48s. Time for last 1,000,000: 2s. Last read position: chr16:89,808,308
INFO 2026-06-08 09:10:27 MarkDuplicates Tracking 452949 as yet unmatched pairs. 594 records in RAM.
INFO 2026-06-08 09:10:30 MarkDuplicates Read 479,000,000 records. Elapsed time: 00:15:51s. Time for last 1,000,000: 3s. Last read position: chr17:1,465,702
INFO 2026-06-08 09:10:30 MarkDuplicates Tracking 451185 as yet unmatched pairs. 146590 records in RAM.
INFO 2026-06-08 09:10:32 MarkDuplicates Read 480,000,000 records. Elapsed time: 00:15:53s. Time for last 1,000,000: 1s. Last read position: chr17:1,844,525
INFO 2026-06-08 09:10:32 MarkDuplicates Tracking 447166 as yet unmatched pairs. 142571 records in RAM.
INFO 2026-06-08 09:10:33 MarkDuplicates Read 481,000,000 records. Elapsed time: 00:15:54s. Time for last 1,000,000: 1s. Last read position: chr17:4,682,816
INFO 2026-06-08 09:10:33 MarkDuplicates Tracking 443915 as yet unmatched pairs. 139320 records in RAM.
INFO 2026-06-08 09:10:35 MarkDuplicates Read 482,000,000 records. Elapsed time: 00:15:56s. Time for last 1,000,000: 1s. Last read position: chr17:6,620,789
INFO 2026-06-08 09:10:35 MarkDuplicates Tracking 440382 as yet unmatched pairs. 135787 records in RAM.
INFO 2026-06-08 09:10:37 MarkDuplicates Read 483,000,000 records. Elapsed time: 00:15:58s. Time for last 1,000,000: 1s. Last read position: chr17:7,463,314
INFO 2026-06-08 09:10:37 MarkDuplicates Tracking 438224 as yet unmatched pairs. 133625 records in RAM.
INFO 2026-06-08 09:10:39 MarkDuplicates Read 484,000,000 records. Elapsed time: 00:16:00s. Time for last 1,000,000: 1s. Last read position: chr17:7,675,149
INFO 2026-06-08 09:10:39 MarkDuplicates Tracking 435461 as yet unmatched pairs. 130862 records in RAM.
INFO 2026-06-08 09:10:40 MarkDuplicates Read 485,000,000 records. Elapsed time: 00:16:01s. Time for last 1,000,000: 1s. Last read position: chr17:8,174,587
INFO 2026-06-08 09:10:40 MarkDuplicates Tracking 431505 as yet unmatched pairs. 126906 records in RAM.
INFO 2026-06-08 09:10:42 MarkDuplicates Read 486,000,000 records. Elapsed time: 00:16:03s. Time for last 1,000,000: 1s. Last read position: chr17:16,064,934
INFO 2026-06-08 09:10:42 MarkDuplicates Tracking 428753 as yet unmatched pairs. 124153 records in RAM.
INFO 2026-06-08 09:10:44 MarkDuplicates Read 487,000,000 records. Elapsed time: 00:16:05s. Time for last 1,000,000: 1s. Last read position: chr17:17,796,840
INFO 2026-06-08 09:10:44 MarkDuplicates Tracking 425939 as yet unmatched pairs. 121336 records in RAM.
INFO 2026-06-08 09:10:46 MarkDuplicates Read 488,000,000 records. Elapsed time: 00:16:06s. Time for last 1,000,000: 1s. Last read position: chr17:19,385,448
INFO 2026-06-08 09:10:46 MarkDuplicates Tracking 426003 as yet unmatched pairs. 121397 records in RAM.
INFO 2026-06-08 09:10:47 MarkDuplicates Read 489,000,000 records. Elapsed time: 00:16:08s. Time for last 1,000,000: 1s. Last read position: chr17:28,676,403
INFO 2026-06-08 09:10:47 MarkDuplicates Tracking 420076 as yet unmatched pairs. 115464 records in RAM.
INFO 2026-06-08 09:10:49 MarkDuplicates Read 490,000,000 records. Elapsed time: 00:16:10s. Time for last 1,000,000: 1s. Last read position: chr17:30,422,884
INFO 2026-06-08 09:10:49 MarkDuplicates Tracking 417586 as yet unmatched pairs. 112972 records in RAM.
INFO 2026-06-08 09:10:51 MarkDuplicates Read 491,000,000 records. Elapsed time: 00:16:12s. Time for last 1,000,000: 1s. Last read position: chr17:35,259,476
INFO 2026-06-08 09:10:51 MarkDuplicates Tracking 415249 as yet unmatched pairs. 110632 records in RAM.
INFO 2026-06-08 09:10:53 MarkDuplicates Read 492,000,000 records. Elapsed time: 00:16:14s. Time for last 1,000,000: 2s. Last read position: chr17:37,205,828
INFO 2026-06-08 09:10:53 MarkDuplicates Tracking 411539 as yet unmatched pairs. 106922 records in RAM.
INFO 2026-06-08 09:13:03 MarkDuplicates Read 493,000,000 records. Elapsed time: 00:18:24s. Time for last 1,000,000: 129s. Last read position: chr17:38,852,680
INFO 2026-06-08 09:13:03 MarkDuplicates Tracking 411567 as yet unmatched pairs. 106950 records in RAM.
INFO 2026-06-08 09:13:05 MarkDuplicates Read 494,000,000 records. Elapsed time: 00:18:26s. Time for last 1,000,000: 2s. Last read position: chr17:39,716,412
INFO 2026-06-08 09:13:05 MarkDuplicates Tracking 412813 as yet unmatched pairs. 108196 records in RAM.
INFO 2026-06-08 09:13:07 MarkDuplicates Read 495,000,000 records. Elapsed time: 00:18:27s. Time for last 1,000,000: 1s. Last read position: chr17:40,399,068
INFO 2026-06-08 09:13:07 MarkDuplicates Tracking 403022 as yet unmatched pairs. 98403 records in RAM.
INFO 2026-06-08 09:13:08 MarkDuplicates Read 496,000,000 records. Elapsed time: 00:18:29s. Time for last 1,000,000: 1s. Last read position: chr17:42,309,430
INFO 2026-06-08 09:13:08 MarkDuplicates Tracking 400221 as yet unmatched pairs. 95600 records in RAM.
INFO 2026-06-08 09:13:10 MarkDuplicates Read 497,000,000 records. Elapsed time: 00:18:31s. Time for last 1,000,000: 1s. Last read position: chr17:43,016,476
INFO 2026-06-08 09:13:10 MarkDuplicates Tracking 397182 as yet unmatched pairs. 92560 records in RAM.
INFO 2026-06-08 09:13:12 MarkDuplicates Read 498,000,000 records. Elapsed time: 00:18:33s. Time for last 1,000,000: 1s. Last read position: chr17:44,799,174
INFO 2026-06-08 09:13:12 MarkDuplicates Tracking 393685 as yet unmatched pairs. 89061 records in RAM.
INFO 2026-06-08 09:13:13 MarkDuplicates Read 499,000,000 records. Elapsed time: 00:18:34s. Time for last 1,000,000: 1s. Last read position: chr17:47,650,419
INFO 2026-06-08 09:13:13 MarkDuplicates Tracking 392679 as yet unmatched pairs. 88054 records in RAM.
INFO 2026-06-08 09:13:15 MarkDuplicates Read 500,000,000 records. Elapsed time: 00:18:36s. Time for last 1,000,000: 1s. Last read position: chr17:50,167,607
INFO 2026-06-08 09:13:15 MarkDuplicates Tracking 388542 as yet unmatched pairs. 83917 records in RAM.
INFO 2026-06-08 09:13:17 MarkDuplicates Read 501,000,000 records. Elapsed time: 00:18:38s. Time for last 1,000,000: 1s. Last read position: chr17:50,186,765
INFO 2026-06-08 09:13:17 MarkDuplicates Tracking 404302 as yet unmatched pairs. 99676 records in RAM.
INFO 2026-06-08 09:13:19 MarkDuplicates Read 502,000,000 records. Elapsed time: 00:18:40s. Time for last 1,000,000: 1s. Last read position: chr17:50,187,921
INFO 2026-06-08 09:13:19 MarkDuplicates Tracking 436926 as yet unmatched pairs. 132297 records in RAM.
INFO 2026-06-08 09:13:21 MarkDuplicates Read 503,000,000 records. Elapsed time: 00:18:41s. Time for last 1,000,000: 1s. Last read position: chr17:50,188,770
INFO 2026-06-08 09:13:21 MarkDuplicates Tracking 434862 as yet unmatched pairs. 130231 records in RAM.
INFO 2026-06-08 09:13:22 MarkDuplicates Read 504,000,000 records. Elapsed time: 00:18:43s. Time for last 1,000,000: 1s. Last read position: chr17:50,189,488
INFO 2026-06-08 09:13:22 MarkDuplicates Tracking 419410 as yet unmatched pairs. 114779 records in RAM.
INFO 2026-06-08 09:13:24 MarkDuplicates Read 505,000,000 records. Elapsed time: 00:18:45s. Time for last 1,000,000: 1s. Last read position: chr17:50,190,332
INFO 2026-06-08 09:13:24 MarkDuplicates Tracking 444656 as yet unmatched pairs. 140025 records in RAM.
INFO 2026-06-08 09:13:26 MarkDuplicates Read 506,000,000 records. Elapsed time: 00:18:47s. Time for last 1,000,000: 1s. Last read position: chr17:50,191,827
INFO 2026-06-08 09:13:26 MarkDuplicates Tracking 432382 as yet unmatched pairs. 127746 records in RAM.
INFO 2026-06-08 09:13:28 MarkDuplicates Read 507,000,000 records. Elapsed time: 00:18:49s. Time for last 1,000,000: 2s. Last read position: chr17:50,192,832
INFO 2026-06-08 09:13:28 MarkDuplicates Tracking 436746 as yet unmatched pairs. 132109 records in RAM.
INFO 2026-06-08 09:13:30 MarkDuplicates Read 508,000,000 records. Elapsed time: 00:18:51s. Time for last 1,000,000: 1s. Last read position: chr17:50,194,348
INFO 2026-06-08 09:13:30 MarkDuplicates Tracking 426983 as yet unmatched pairs. 122337 records in RAM.
INFO 2026-06-08 09:13:32 MarkDuplicates Read 509,000,000 records. Elapsed time: 00:18:53s. Time for last 1,000,000: 1s. Last read position: chr17:50,195,056
INFO 2026-06-08 09:13:32 MarkDuplicates Tracking 417029 as yet unmatched pairs. 112383 records in RAM.
INFO 2026-06-08 09:13:34 MarkDuplicates Read 510,000,000 records. Elapsed time: 00:18:54s. Time for last 1,000,000: 1s. Last read position: chr17:50,195,659
INFO 2026-06-08 09:13:34 MarkDuplicates Tracking 420055 as yet unmatched pairs. 115403 records in RAM.
INFO 2026-06-08 09:13:35 MarkDuplicates Read 511,000,000 records. Elapsed time: 00:18:56s. Time for last 1,000,000: 1s. Last read position: chr17:50,196,517
INFO 2026-06-08 09:13:35 MarkDuplicates Tracking 422208 as yet unmatched pairs. 117556 records in RAM.
INFO 2026-06-08 09:13:37 MarkDuplicates Read 512,000,000 records. Elapsed time: 00:18:58s. Time for last 1,000,000: 2s. Last read position: chr17:50,197,984
INFO 2026-06-08 09:13:37 MarkDuplicates Tracking 394430 as yet unmatched pairs. 89778 records in RAM.
INFO 2026-06-08 09:13:39 MarkDuplicates Read 513,000,000 records. Elapsed time: 00:19:00s. Time for last 1,000,000: 1s. Last read position: chr17:50,199,569
INFO 2026-06-08 09:13:39 MarkDuplicates Tracking 375100 as yet unmatched pairs. 70442 records in RAM.
INFO 2026-06-08 09:13:41 MarkDuplicates Read 514,000,000 records. Elapsed time: 00:19:02s. Time for last 1,000,000: 1s. Last read position: chr17:50,687,552
INFO 2026-06-08 09:13:41 MarkDuplicates Tracking 346282 as yet unmatched pairs. 41624 records in RAM.
INFO 2026-06-08 09:13:43 MarkDuplicates Read 515,000,000 records. Elapsed time: 00:19:03s. Time for last 1,000,000: 1s. Last read position: chr17:59,119,449
INFO 2026-06-08 09:13:43 MarkDuplicates Tracking 342292 as yet unmatched pairs. 37634 records in RAM.
INFO 2026-06-08 09:13:44 MarkDuplicates Read 516,000,000 records. Elapsed time: 00:19:05s. Time for last 1,000,000: 1s. Last read position: chr17:59,683,726
INFO 2026-06-08 09:13:44 MarkDuplicates Tracking 343160 as yet unmatched pairs. 38502 records in RAM.
INFO 2026-06-08 09:13:46 MarkDuplicates Read 517,000,000 records. Elapsed time: 00:19:07s. Time for last 1,000,000: 1s. Last read position: chr17:63,420,400
INFO 2026-06-08 09:13:46 MarkDuplicates Tracking 336459 as yet unmatched pairs. 31797 records in RAM.
INFO 2026-06-08 09:13:48 MarkDuplicates Read 518,000,000 records. Elapsed time: 00:19:09s. Time for last 1,000,000: 1s. Last read position: chr17:64,545,814
INFO 2026-06-08 09:13:48 MarkDuplicates Tracking 333445 as yet unmatched pairs. 28783 records in RAM.
INFO 2026-06-08 09:13:49 MarkDuplicates Read 519,000,000 records. Elapsed time: 00:19:10s. Time for last 1,000,000: 1s. Last read position: chr17:68,528,921
INFO 2026-06-08 09:13:49 MarkDuplicates Tracking 332367 as yet unmatched pairs. 27704 records in RAM.
INFO 2026-06-08 09:13:51 MarkDuplicates Read 520,000,000 records. Elapsed time: 00:19:12s. Time for last 1,000,000: 2s. Last read position: chr17:75,238,348
INFO 2026-06-08 09:13:51 MarkDuplicates Tracking 327942 as yet unmatched pairs. 23274 records in RAM.
INFO 2026-06-08 09:13:53 MarkDuplicates Read 521,000,000 records. Elapsed time: 00:19:14s. Time for last 1,000,000: 1s. Last read position: chr17:75,874,713
INFO 2026-06-08 09:13:53 MarkDuplicates Tracking 324201 as yet unmatched pairs. 19533 records in RAM.
INFO 2026-06-08 09:13:55 MarkDuplicates Read 522,000,000 records. Elapsed time: 00:19:16s. Time for last 1,000,000: 1s. Last read position: chr17:77,492,689
INFO 2026-06-08 09:13:55 MarkDuplicates Tracking 322033 as yet unmatched pairs. 17364 records in RAM.
INFO 2026-06-08 09:13:57 MarkDuplicates Read 523,000,000 records. Elapsed time: 00:19:17s. Time for last 1,000,000: 1s. Last read position: chr17:79,834,677
INFO 2026-06-08 09:13:57 MarkDuplicates Tracking 317709 as yet unmatched pairs. 13039 records in RAM.
INFO 2026-06-08 09:13:58 MarkDuplicates Read 524,000,000 records. Elapsed time: 00:19:19s. Time for last 1,000,000: 1s. Last read position: chr17:81,197,863
INFO 2026-06-08 09:13:58 MarkDuplicates Tracking 314328 as yet unmatched pairs. 9658 records in RAM.
INFO 2026-06-08 09:14:00 MarkDuplicates Read 525,000,000 records. Elapsed time: 00:19:21s. Time for last 1,000,000: 1s. Last read position: chr17:81,844,009
INFO 2026-06-08 09:14:00 MarkDuplicates Tracking 314609 as yet unmatched pairs. 9934 records in RAM.
INFO 2026-06-08 09:14:02 MarkDuplicates Read 526,000,000 records. Elapsed time: 00:19:22s. Time for last 1,000,000: 1s. Last read position: chr17:82,084,616
INFO 2026-06-08 09:14:02 MarkDuplicates Tracking 308460 as yet unmatched pairs. 3779 records in RAM.
INFO 2026-06-08 09:14:03 MarkDuplicates Read 527,000,000 records. Elapsed time: 00:19:24s. Time for last 1,000,000: 1s. Last read position: chr18:346,306
INFO 2026-06-08 09:14:03 MarkDuplicates Tracking 305011 as yet unmatched pairs. 14128 records in RAM.
INFO 2026-06-08 09:14:05 MarkDuplicates Read 528,000,000 records. Elapsed time: 00:19:25s. Time for last 1,000,000: 1s. Last read position: chr18:11,885,763
INFO 2026-06-08 09:14:05 MarkDuplicates Tracking 301897 as yet unmatched pairs. 11011 records in RAM.
INFO 2026-06-08 09:14:06 MarkDuplicates Read 529,000,000 records. Elapsed time: 00:19:27s. Time for last 1,000,000: 1s. Last read position: chr18:31,101,961
INFO 2026-06-08 09:14:06 MarkDuplicates Tracking 299000 as yet unmatched pairs. 8111 records in RAM.
INFO 2026-06-08 09:14:08 MarkDuplicates Read 530,000,000 records. Elapsed time: 00:19:29s. Time for last 1,000,000: 1s. Last read position: chr18:49,490,825
INFO 2026-06-08 09:14:08 MarkDuplicates Tracking 303366 as yet unmatched pairs. 12476 records in RAM.
INFO 2026-06-08 09:14:09 MarkDuplicates Read 531,000,000 records. Elapsed time: 00:19:30s. Time for last 1,000,000: 1s. Last read position: chr18:62,282,419
INFO 2026-06-08 09:14:09 MarkDuplicates Tracking 294252 as yet unmatched pairs. 3360 records in RAM.
INFO 2026-06-08 09:14:12 MarkDuplicates Read 532,000,000 records. Elapsed time: 00:19:33s. Time for last 1,000,000: 2s. Last read position: chr19:579,510
INFO 2026-06-08 09:14:12 MarkDuplicates Tracking 293293 as yet unmatched pairs. 134710 records in RAM.
INFO 2026-06-08 09:14:14 MarkDuplicates Read 533,000,000 records. Elapsed time: 00:19:35s. Time for last 1,000,000: 2s. Last read position: chr19:1,063,566
INFO 2026-06-08 09:14:14 MarkDuplicates Tracking 286665 as yet unmatched pairs. 128082 records in RAM.
INFO 2026-06-08 09:14:15 MarkDuplicates Read 534,000,000 records. Elapsed time: 00:19:36s. Time for last 1,000,000: 1s. Last read position: chr19:1,274,363
INFO 2026-06-08 09:14:15 MarkDuplicates Tracking 283978 as yet unmatched pairs. 125394 records in RAM.
INFO 2026-06-08 09:14:18 MarkDuplicates Read 535,000,000 records. Elapsed time: 00:19:39s. Time for last 1,000,000: 2s. Last read position: chr19:2,043,503
INFO 2026-06-08 09:14:18 MarkDuplicates Tracking 280154 as yet unmatched pairs. 121569 records in RAM.
INFO 2026-06-08 09:14:21 MarkDuplicates Read 536,000,000 records. Elapsed time: 00:19:42s. Time for last 1,000,000: 2s. Last read position: chr19:3,381,833
INFO 2026-06-08 09:14:21 MarkDuplicates Tracking 277537 as yet unmatched pairs. 118949 records in RAM.
INFO 2026-06-08 09:14:23 MarkDuplicates Read 537,000,000 records. Elapsed time: 00:19:44s. Time for last 1,000,000: 1s. Last read position: chr19:4,510,795
INFO 2026-06-08 09:14:23 MarkDuplicates Tracking 272480 as yet unmatched pairs. 113891 records in RAM.
INFO 2026-06-08 09:14:24 MarkDuplicates Read 538,000,000 records. Elapsed time: 00:19:45s. Time for last 1,000,000: 1s. Last read position: chr19:5,896,504
INFO 2026-06-08 09:14:24 MarkDuplicates Tracking 270571 as yet unmatched pairs. 111978 records in RAM.
INFO 2026-06-08 09:14:26 MarkDuplicates Read 539,000,000 records. Elapsed time: 00:19:47s. Time for last 1,000,000: 1s. Last read position: chr19:6,707,250
INFO 2026-06-08 09:14:26 MarkDuplicates Tracking 268035 as yet unmatched pairs. 109441 records in RAM.
INFO 2026-06-08 09:14:28 MarkDuplicates Read 540,000,000 records. Elapsed time: 00:19:49s. Time for last 1,000,000: 1s. Last read position: chr19:7,621,144
INFO 2026-06-08 09:14:28 MarkDuplicates Tracking 263154 as yet unmatched pairs. 104559 records in RAM.
INFO 2026-06-08 09:14:29 MarkDuplicates Read 541,000,000 records. Elapsed time: 00:19:50s. Time for last 1,000,000: 1s. Last read position: chr19:8,914,182
INFO 2026-06-08 09:14:29 MarkDuplicates Tracking 259874 as yet unmatched pairs. 101278 records in RAM.
INFO 2026-06-08 09:14:31 MarkDuplicates Read 542,000,000 records. Elapsed time: 00:19:52s. Time for last 1,000,000: 1s. Last read position: chr19:10,284,483
INFO 2026-06-08 09:14:31 MarkDuplicates Tracking 259700 as yet unmatched pairs. 101104 records in RAM.
INFO 2026-06-08 09:14:33 MarkDuplicates Read 543,000,000 records. Elapsed time: 00:19:54s. Time for last 1,000,000: 1s. Last read position: chr19:10,923,535
INFO 2026-06-08 09:14:33 MarkDuplicates Tracking 254746 as yet unmatched pairs. 96150 records in RAM.
INFO 2026-06-08 09:14:34 MarkDuplicates Read 544,000,000 records. Elapsed time: 00:19:55s. Time for last 1,000,000: 1s. Last read position: chr19:11,666,375
INFO 2026-06-08 09:14:34 MarkDuplicates Tracking 250536 as yet unmatched pairs. 91939 records in RAM.
INFO 2026-06-08 09:14:36 MarkDuplicates Read 545,000,000 records. Elapsed time: 00:19:57s. Time for last 1,000,000: 1s. Last read position: chr19:12,940,326
INFO 2026-06-08 09:14:36 MarkDuplicates Tracking 248137 as yet unmatched pairs. 89536 records in RAM.
INFO 2026-06-08 09:14:38 MarkDuplicates Read 546,000,000 records. Elapsed time: 00:19:58s. Time for last 1,000,000: 1s. Last read position: chr19:14,100,869
INFO 2026-06-08 09:14:38 MarkDuplicates Tracking 246304 as yet unmatched pairs. 87700 records in RAM.
INFO 2026-06-08 09:14:40 MarkDuplicates Read 547,000,000 records. Elapsed time: 00:20:01s. Time for last 1,000,000: 2s. Last read position: chr19:15,167,249
INFO 2026-06-08 09:14:40 MarkDuplicates Tracking 241486 as yet unmatched pairs. 82876 records in RAM.
INFO 2026-06-08 09:14:42 MarkDuplicates Read 548,000,000 records. Elapsed time: 00:20:03s. Time for last 1,000,000: 1s. Last read position: chr19:15,423,113
INFO 2026-06-08 09:14:42 MarkDuplicates Tracking 237151 as yet unmatched pairs. 78539 records in RAM.
INFO 2026-06-08 09:14:44 MarkDuplicates Read 549,000,000 records. Elapsed time: 00:20:05s. Time for last 1,000,000: 1s. Last read position: chr19:17,327,466
INFO 2026-06-08 09:14:44 MarkDuplicates Tracking 233419 as yet unmatched pairs. 74806 records in RAM.
INFO 2026-06-08 09:14:45 MarkDuplicates Read 550,000,000 records. Elapsed time: 00:20:06s. Time for last 1,000,000: 1s. Last read position: chr19:18,280,449
INFO 2026-06-08 09:14:45 MarkDuplicates Tracking 231492 as yet unmatched pairs. 72878 records in RAM.
INFO 2026-06-08 09:14:47 MarkDuplicates Read 551,000,000 records. Elapsed time: 00:20:08s. Time for last 1,000,000: 1s. Last read position: chr19:18,911,026
INFO 2026-06-08 09:14:47 MarkDuplicates Tracking 226993 as yet unmatched pairs. 68379 records in RAM.
INFO 2026-06-08 09:14:49 MarkDuplicates Read 552,000,000 records. Elapsed time: 00:20:10s. Time for last 1,000,000: 1s. Last read position: chr19:33,205,556
INFO 2026-06-08 09:14:49 MarkDuplicates Tracking 223768 as yet unmatched pairs. 65145 records in RAM.
INFO 2026-06-08 09:14:50 MarkDuplicates Read 553,000,000 records. Elapsed time: 00:20:11s. Time for last 1,000,000: 1s. Last read position: chr19:35,629,147
INFO 2026-06-08 09:14:50 MarkDuplicates Tracking 219772 as yet unmatched pairs. 61147 records in RAM.
INFO 2026-06-08 09:14:52 MarkDuplicates Read 554,000,000 records. Elapsed time: 00:20:13s. Time for last 1,000,000: 2s. Last read position: chr19:38,251,400
INFO 2026-06-08 09:14:52 MarkDuplicates Tracking 218385 as yet unmatched pairs. 59760 records in RAM.
INFO 2026-06-08 09:14:54 MarkDuplicates Read 555,000,000 records. Elapsed time: 00:20:15s. Time for last 1,000,000: 1s. Last read position: chr19:39,369,953
INFO 2026-06-08 09:14:54 MarkDuplicates Tracking 213810 as yet unmatched pairs. 55180 records in RAM.
INFO 2026-06-08 09:14:56 MarkDuplicates Read 556,000,000 records. Elapsed time: 00:20:17s. Time for last 1,000,000: 1s. Last read position: chr19:39,476,091
INFO 2026-06-08 09:14:56 MarkDuplicates Tracking 210837 as yet unmatched pairs. 52207 records in RAM.
INFO 2026-06-08 09:14:58 MarkDuplicates Read 557,000,000 records. Elapsed time: 00:20:19s. Time for last 1,000,000: 2s. Last read position: chr19:40,238,960
INFO 2026-06-08 09:14:58 MarkDuplicates Tracking 209833 as yet unmatched pairs. 51203 records in RAM.
INFO 2026-06-08 09:15:01 MarkDuplicates Read 558,000,000 records. Elapsed time: 00:20:22s. Time for last 1,000,000: 2s. Last read position: chr19:40,717,321
INFO 2026-06-08 09:15:01 MarkDuplicates Tracking 205446 as yet unmatched pairs. 46811 records in RAM.
INFO 2026-06-08 09:15:03 MarkDuplicates Read 559,000,000 records. Elapsed time: 00:20:23s. Time for last 1,000,000: 1s. Last read position: chr19:41,903,384
INFO 2026-06-08 09:15:03 MarkDuplicates Tracking 201631 as yet unmatched pairs. 42995 records in RAM.
INFO 2026-06-08 09:15:04 MarkDuplicates Read 560,000,000 records. Elapsed time: 00:20:25s. Time for last 1,000,000: 1s. Last read position: chr19:42,291,493
INFO 2026-06-08 09:15:04 MarkDuplicates Tracking 200079 as yet unmatched pairs. 41443 records in RAM.
INFO 2026-06-08 09:15:06 MarkDuplicates Read 561,000,000 records. Elapsed time: 00:20:27s. Time for last 1,000,000: 1s. Last read position: chr19:44,814,161
INFO 2026-06-08 09:15:06 MarkDuplicates Tracking 195363 as yet unmatched pairs. 36722 records in RAM.
INFO 2026-06-08 09:15:07 MarkDuplicates Read 562,000,000 records. Elapsed time: 00:20:28s. Time for last 1,000,000: 1s. Last read position: chr19:45,408,992
INFO 2026-06-08 09:15:07 MarkDuplicates Tracking 190890 as yet unmatched pairs. 32249 records in RAM.
INFO 2026-06-08 09:15:09 MarkDuplicates Read 563,000,000 records. Elapsed time: 00:20:30s. Time for last 1,000,000: 1s. Last read position: chr19:46,730,780
INFO 2026-06-08 09:15:09 MarkDuplicates Tracking 187332 as yet unmatched pairs. 28689 records in RAM.
INFO 2026-06-08 09:15:11 MarkDuplicates Read 564,000,000 records. Elapsed time: 00:20:32s. Time for last 1,000,000: 1s. Last read position: chr19:48,230,937
INFO 2026-06-08 09:15:11 MarkDuplicates Tracking 184041 as yet unmatched pairs. 25398 records in RAM.
INFO 2026-06-08 09:15:13 MarkDuplicates Read 565,000,000 records. Elapsed time: 00:20:33s. Time for last 1,000,000: 1s. Last read position: chr19:49,098,440
INFO 2026-06-08 09:15:13 MarkDuplicates Tracking 181899 as yet unmatched pairs. 23253 records in RAM.
INFO 2026-06-08 09:15:14 MarkDuplicates Read 566,000,000 records. Elapsed time: 00:20:35s. Time for last 1,000,000: 1s. Last read position: chr19:49,557,192
INFO 2026-06-08 09:15:14 MarkDuplicates Tracking 178199 as yet unmatched pairs. 19551 records in RAM.
INFO 2026-06-08 09:15:16 MarkDuplicates Read 567,000,000 records. Elapsed time: 00:20:37s. Time for last 1,000,000: 2s. Last read position: chr19:50,210,619
INFO 2026-06-08 09:15:16 MarkDuplicates Tracking 175113 as yet unmatched pairs. 16464 records in RAM.
INFO 2026-06-08 09:15:18 MarkDuplicates Read 568,000,000 records. Elapsed time: 00:20:39s. Time for last 1,000,000: 1s. Last read position: chr19:50,480,697
INFO 2026-06-08 09:15:18 MarkDuplicates Tracking 173072 as yet unmatched pairs. 14423 records in RAM.
INFO 2026-06-08 09:15:20 MarkDuplicates Read 569,000,000 records. Elapsed time: 00:20:41s. Time for last 1,000,000: 1s. Last read position: chr19:54,191,434
INFO 2026-06-08 09:15:20 MarkDuplicates Tracking 169020 as yet unmatched pairs. 10371 records in RAM.
INFO 2026-06-08 09:15:22 MarkDuplicates Read 570,000,000 records. Elapsed time: 00:20:42s. Time for last 1,000,000: 1s. Last read position: chr19:55,386,416
INFO 2026-06-08 09:15:22 MarkDuplicates Tracking 168559 as yet unmatched pairs. 9910 records in RAM.
INFO 2026-06-08 09:15:23 MarkDuplicates Read 571,000,000 records. Elapsed time: 00:20:44s. Time for last 1,000,000: 1s. Last read position: chr19:57,640,953
INFO 2026-06-08 09:15:23 MarkDuplicates Tracking 161541 as yet unmatched pairs. 2891 records in RAM.
INFO 2026-06-08 09:15:26 MarkDuplicates Read 572,000,000 records. Elapsed time: 00:20:47s. Time for last 1,000,000: 2s. Last read position: chr20:410,002
INFO 2026-06-08 09:15:26 MarkDuplicates Tracking 159788 as yet unmatched pairs. 39384 records in RAM.
INFO 2026-06-08 09:15:28 MarkDuplicates Read 573,000,000 records. Elapsed time: 00:20:49s. Time for last 1,000,000: 1s. Last read position: chr20:3,694,800
INFO 2026-06-08 09:15:28 MarkDuplicates Tracking 155673 as yet unmatched pairs. 35269 records in RAM.
INFO 2026-06-08 09:15:30 MarkDuplicates Read 574,000,000 records. Elapsed time: 00:20:51s. Time for last 1,000,000: 1s. Last read position: chr20:17,607,068
INFO 2026-06-08 09:15:30 MarkDuplicates Tracking 153567 as yet unmatched pairs. 33160 records in RAM.
INFO 2026-06-08 09:15:33 MarkDuplicates Read 575,000,000 records. Elapsed time: 00:20:53s. Time for last 1,000,000: 2s. Last read position: chr20:23,633,826
INFO 2026-06-08 09:15:33 MarkDuplicates Tracking 150977 as yet unmatched pairs. 30570 records in RAM.
INFO 2026-06-08 09:15:36 MarkDuplicates Read 576,000,000 records. Elapsed time: 00:20:56s. Time for last 1,000,000: 3s. Last read position: chr20:33,417,791
INFO 2026-06-08 09:15:36 MarkDuplicates Tracking 146468 as yet unmatched pairs. 26058 records in RAM.
INFO 2026-06-08 09:15:37 MarkDuplicates Read 577,000,000 records. Elapsed time: 00:20:58s. Time for last 1,000,000: 1s. Last read position: chr20:35,698,481
INFO 2026-06-08 09:15:37 MarkDuplicates Tracking 143663 as yet unmatched pairs. 23253 records in RAM.
INFO 2026-06-08 09:15:39 MarkDuplicates Read 578,000,000 records. Elapsed time: 00:21:00s. Time for last 1,000,000: 1s. Last read position: chr20:38,155,861
INFO 2026-06-08 09:15:39 MarkDuplicates Tracking 141805 as yet unmatched pairs. 21393 records in RAM.
INFO 2026-06-08 09:15:41 MarkDuplicates Read 579,000,000 records. Elapsed time: 00:21:02s. Time for last 1,000,000: 1s. Last read position: chr20:45,327,275
INFO 2026-06-08 09:15:41 MarkDuplicates Tracking 144015 as yet unmatched pairs. 23601 records in RAM.
INFO 2026-06-08 09:15:42 MarkDuplicates Read 580,000,000 records. Elapsed time: 00:21:03s. Time for last 1,000,000: 1s. Last read position: chr20:45,945,825
INFO 2026-06-08 09:15:42 MarkDuplicates Tracking 134893 as yet unmatched pairs. 14478 records in RAM.
INFO 2026-06-08 09:15:44 MarkDuplicates Read 581,000,000 records. Elapsed time: 00:21:05s. Time for last 1,000,000: 1s. Last read position: chr20:50,191,733
INFO 2026-06-08 09:15:44 MarkDuplicates Tracking 133028 as yet unmatched pairs. 12613 records in RAM.
INFO 2026-06-08 09:15:45 MarkDuplicates Read 582,000,000 records. Elapsed time: 00:21:06s. Time for last 1,000,000: 1s. Last read position: chr20:58,903,568
INFO 2026-06-08 09:15:45 MarkDuplicates Tracking 130627 as yet unmatched pairs. 10212 records in RAM.
INFO 2026-06-08 09:15:47 MarkDuplicates Read 583,000,000 records. Elapsed time: 00:21:08s. Time for last 1,000,000: 1s. Last read position: chr20:62,387,318
INFO 2026-06-08 09:15:47 MarkDuplicates Tracking 126086 as yet unmatched pairs. 5671 records in RAM.
INFO 2026-06-08 09:15:49 MarkDuplicates Read 584,000,000 records. Elapsed time: 00:21:10s. Time for last 1,000,000: 1s. Last read position: chr20:63,789,874
INFO 2026-06-08 09:15:49 MarkDuplicates Tracking 121629 as yet unmatched pairs. 1213 records in RAM.
INFO 2026-06-08 09:15:51 MarkDuplicates Read 585,000,000 records. Elapsed time: 00:21:12s. Time for last 1,000,000: 1s. Last read position: chr21:8,217,383
INFO 2026-06-08 09:15:51 MarkDuplicates Tracking 118673 as yet unmatched pairs. 21701 records in RAM.
INFO 2026-06-08 09:15:52 MarkDuplicates Read 586,000,000 records. Elapsed time: 00:21:13s. Time for last 1,000,000: 1s. Last read position: chr21:17,774,104
INFO 2026-06-08 09:15:52 MarkDuplicates Tracking 116900 as yet unmatched pairs. 19922 records in RAM.
INFO 2026-06-08 09:15:54 MarkDuplicates Read 587,000,000 records. Elapsed time: 00:21:15s. Time for last 1,000,000: 2s. Last read position: chr21:32,354,868
INFO 2026-06-08 09:15:54 MarkDuplicates Tracking 114252 as yet unmatched pairs. 17274 records in RAM.
INFO 2026-06-08 09:15:56 MarkDuplicates Read 588,000,000 records. Elapsed time: 00:21:17s. Time for last 1,000,000: 1s. Last read position: chr21:34,859,500
INFO 2026-06-08 09:15:56 MarkDuplicates Tracking 112148 as yet unmatched pairs. 15164 records in RAM.
INFO 2026-06-08 09:15:58 MarkDuplicates Read 589,000,000 records. Elapsed time: 00:21:19s. Time for last 1,000,000: 1s. Last read position: chr21:41,467,759
INFO 2026-06-08 09:15:58 MarkDuplicates Tracking 109542 as yet unmatched pairs. 12555 records in RAM.
INFO 2026-06-08 09:16:00 MarkDuplicates Read 590,000,000 records. Elapsed time: 00:21:20s. Time for last 1,000,000: 1s. Last read position: chr21:44,324,638
INFO 2026-06-08 09:16:00 MarkDuplicates Tracking 105627 as yet unmatched pairs. 8639 records in RAM.
INFO 2026-06-08 09:16:01 MarkDuplicates Read 591,000,000 records. Elapsed time: 00:21:22s. Time for last 1,000,000: 1s. Last read position: chr21:45,510,250
INFO 2026-06-08 09:16:01 MarkDuplicates Tracking 103981 as yet unmatched pairs. 6993 records in RAM.
INFO 2026-06-08 09:16:03 MarkDuplicates Read 592,000,000 records. Elapsed time: 00:21:24s. Time for last 1,000,000: 1s. Last read position: chr21:46,125,873
INFO 2026-06-08 09:16:03 MarkDuplicates Tracking 99999 as yet unmatched pairs. 3011 records in RAM.
INFO 2026-06-08 09:16:05 MarkDuplicates Read 593,000,000 records. Elapsed time: 00:21:26s. Time for last 1,000,000: 2s. Last read position: chr22:19,137,414
INFO 2026-06-08 09:16:05 MarkDuplicates Tracking 95830 as yet unmatched pairs. 42801 records in RAM.
INFO 2026-06-08 09:16:07 MarkDuplicates Read 594,000,000 records. Elapsed time: 00:21:28s. Time for last 1,000,000: 1s. Last read position: chr22:21,442,663
INFO 2026-06-08 09:16:07 MarkDuplicates Tracking 92228 as yet unmatched pairs. 39199 records in RAM.
INFO 2026-06-08 09:16:09 MarkDuplicates Read 595,000,000 records. Elapsed time: 00:21:30s. Time for last 1,000,000: 2s. Last read position: chr22:23,781,232
INFO 2026-06-08 09:16:09 MarkDuplicates Tracking 89776 as yet unmatched pairs. 36745 records in RAM.
INFO 2026-06-08 09:16:11 MarkDuplicates Read 596,000,000 records. Elapsed time: 00:21:32s. Time for last 1,000,000: 1s. Last read position: chr22:27,854,851
INFO 2026-06-08 09:16:11 MarkDuplicates Tracking 85892 as yet unmatched pairs. 32861 records in RAM.
INFO 2026-06-08 09:16:13 MarkDuplicates Read 597,000,000 records. Elapsed time: 00:21:33s. Time for last 1,000,000: 1s. Last read position: chr22:29,569,251
INFO 2026-06-08 09:16:13 MarkDuplicates Tracking 82705 as yet unmatched pairs. 29664 records in RAM.
INFO 2026-06-08 09:16:14 MarkDuplicates Read 598,000,000 records. Elapsed time: 00:21:35s. Time for last 1,000,000: 1s. Last read position: chr22:32,498,176
INFO 2026-06-08 09:16:14 MarkDuplicates Tracking 79655 as yet unmatched pairs. 26610 records in RAM.
INFO 2026-06-08 09:16:16 MarkDuplicates Read 599,000,000 records. Elapsed time: 00:21:37s. Time for last 1,000,000: 1s. Last read position: chr22:36,300,188
INFO 2026-06-08 09:16:16 MarkDuplicates Tracking 76665 as yet unmatched pairs. 23620 records in RAM.
INFO 2026-06-08 09:16:17 MarkDuplicates Read 600,000,000 records. Elapsed time: 00:21:38s. Time for last 1,000,000: 1s. Last read position: chr22:37,677,026
INFO 2026-06-08 09:16:17 MarkDuplicates Tracking 74516 as yet unmatched pairs. 21469 records in RAM.
INFO 2026-06-08 09:16:19 MarkDuplicates Read 601,000,000 records. Elapsed time: 00:21:40s. Time for last 1,000,000: 1s. Last read position: chr22:38,866,964
INFO 2026-06-08 09:16:19 MarkDuplicates Tracking 70526 as yet unmatched pairs. 17479 records in RAM.
INFO 2026-06-08 09:16:21 MarkDuplicates Read 602,000,000 records. Elapsed time: 00:21:42s. Time for last 1,000,000: 1s. Last read position: chr22:41,177,426
INFO 2026-06-08 09:16:21 MarkDuplicates Tracking 67699 as yet unmatched pairs. 14649 records in RAM.
INFO 2026-06-08 09:16:23 MarkDuplicates Read 603,000,000 records. Elapsed time: 00:21:44s. Time for last 1,000,000: 1s. Last read position: chr22:42,619,893
INFO 2026-06-08 09:16:23 MarkDuplicates Tracking 67276 as yet unmatched pairs. 14226 records in RAM.
INFO 2026-06-08 09:16:24 MarkDuplicates Read 604,000,000 records. Elapsed time: 00:21:45s. Time for last 1,000,000: 1s. Last read position: chr22:46,411,652
INFO 2026-06-08 09:16:24 MarkDuplicates Tracking 61207 as yet unmatched pairs. 8157 records in RAM.
INFO 2026-06-08 09:16:26 MarkDuplicates Read 605,000,000 records. Elapsed time: 00:21:47s. Time for last 1,000,000: 1s. Last read position: chr22:50,288,024
INFO 2026-06-08 09:16:26 MarkDuplicates Tracking 59205 as yet unmatched pairs. 6154 records in RAM.
INFO 2026-06-08 09:16:28 MarkDuplicates Read 606,000,000 records. Elapsed time: 00:21:48s. Time for last 1,000,000: 1s. Last read position: chr22:50,720,560
INFO 2026-06-08 09:16:28 MarkDuplicates Tracking 53620 as yet unmatched pairs. 568 records in RAM.
INFO 2026-06-08 09:16:31 MarkDuplicates Read 607,000,000 records. Elapsed time: 00:21:52s. Time for last 1,000,000: 3s. Last read position: chrX:5,903,388
INFO 2026-06-08 09:16:31 MarkDuplicates Tracking 50082 as yet unmatched pairs. 45542 records in RAM.
INFO 2026-06-08 09:16:33 MarkDuplicates Read 608,000,000 records. Elapsed time: 00:21:54s. Time for last 1,000,000: 2s. Last read position: chrX:21,992,641
INFO 2026-06-08 09:16:33 MarkDuplicates Tracking 47591 as yet unmatched pairs. 43048 records in RAM.
INFO 2026-06-08 09:16:35 MarkDuplicates Read 609,000,000 records. Elapsed time: 00:21:55s. Time for last 1,000,000: 1s. Last read position: chrX:40,935,688
INFO 2026-06-08 09:16:35 MarkDuplicates Tracking 44746 as yet unmatched pairs. 40203 records in RAM.
INFO 2026-06-08 09:16:36 MarkDuplicates Read 610,000,000 records. Elapsed time: 00:21:57s. Time for last 1,000,000: 1s. Last read position: chrX:47,585,203
INFO 2026-06-08 09:16:36 MarkDuplicates Tracking 43561 as yet unmatched pairs. 39018 records in RAM.
INFO 2026-06-08 09:16:38 MarkDuplicates Read 611,000,000 records. Elapsed time: 00:21:59s. Time for last 1,000,000: 1s. Last read position: chrX:50,635,117
INFO 2026-06-08 09:16:38 MarkDuplicates Tracking 39331 as yet unmatched pairs. 34788 records in RAM.
INFO 2026-06-08 09:16:39 MarkDuplicates Read 612,000,000 records. Elapsed time: 00:22:00s. Time for last 1,000,000: 1s. Last read position: chrX:53,589,789
INFO 2026-06-08 09:16:39 MarkDuplicates Tracking 37345 as yet unmatched pairs. 32802 records in RAM.
INFO 2026-06-08 09:16:41 MarkDuplicates Read 613,000,000 records. Elapsed time: 00:22:02s. Time for last 1,000,000: 1s. Last read position: chrX:69,161,157
INFO 2026-06-08 09:16:41 MarkDuplicates Tracking 33950 as yet unmatched pairs. 29407 records in RAM.
INFO 2026-06-08 09:16:42 MarkDuplicates Read 614,000,000 records. Elapsed time: 00:22:03s. Time for last 1,000,000: 1s. Last read position: chrX:71,563,198
INFO 2026-06-08 09:16:42 MarkDuplicates Tracking 32955 as yet unmatched pairs. 28412 records in RAM.
INFO 2026-06-08 09:16:44 MarkDuplicates Read 615,000,000 records. Elapsed time: 00:22:05s. Time for last 1,000,000: 1s. Last read position: chrX:77,683,343
INFO 2026-06-08 09:16:44 MarkDuplicates Tracking 29480 as yet unmatched pairs. 24937 records in RAM.
INFO 2026-06-08 09:16:46 MarkDuplicates Read 616,000,000 records. Elapsed time: 00:22:06s. Time for last 1,000,000: 1s. Last read position: chrX:101,395,374
INFO 2026-06-08 09:16:46 MarkDuplicates Tracking 25984 as yet unmatched pairs. 21441 records in RAM.
INFO 2026-06-08 09:16:47 MarkDuplicates Read 617,000,000 records. Elapsed time: 00:22:08s. Time for last 1,000,000: 1s. Last read position: chrX:109,665,473
INFO 2026-06-08 09:16:47 MarkDuplicates Tracking 23705 as yet unmatched pairs. 19162 records in RAM.
INFO 2026-06-08 09:16:49 MarkDuplicates Read 618,000,000 records. Elapsed time: 00:22:10s. Time for last 1,000,000: 1s. Last read position: chrX:120,255,286
INFO 2026-06-08 09:16:49 MarkDuplicates Tracking 20729 as yet unmatched pairs. 16186 records in RAM.
INFO 2026-06-08 09:16:50 MarkDuplicates Read 619,000,000 records. Elapsed time: 00:22:11s. Time for last 1,000,000: 1s. Last read position: chrX:133,536,098
INFO 2026-06-08 09:16:50 MarkDuplicates Tracking 18485 as yet unmatched pairs. 13942 records in RAM.
INFO 2026-06-08 09:16:52 MarkDuplicates Read 620,000,000 records. Elapsed time: 00:22:13s. Time for last 1,000,000: 1s. Last read position: chrX:153,504,814
INFO 2026-06-08 09:16:52 MarkDuplicates Tracking 18318 as yet unmatched pairs. 13775 records in RAM.
INFO 2026-06-08 09:16:54 MarkDuplicates Read 621,000,000 records. Elapsed time: 00:22:15s. Time for last 1,000,000: 1s. Last read position: chrX:154,016,530
INFO 2026-06-08 09:16:54 MarkDuplicates Tracking 13615 as yet unmatched pairs. 9072 records in RAM.
INFO 2026-06-08 09:16:56 MarkDuplicates Read 622,000,000 records. Elapsed time: 00:22:17s. Time for last 1,000,000: 1s. Last read position: chrX:154,361,751
INFO 2026-06-08 09:16:56 MarkDuplicates Tracking 10985 as yet unmatched pairs. 6442 records in RAM.
INFO 2026-06-08 09:17:00 MarkDuplicates Read 623,000,000 records. Elapsed time: 00:22:21s. Time for last 1,000,000: 4s. Last read position: chrX:154,485,302
INFO 2026-06-08 09:17:00 MarkDuplicates Tracking 5898 as yet unmatched pairs. 1355 records in RAM.
INFO 2026-06-08 09:17:03 MarkDuplicates Read 624,000,000 records. Elapsed time: 00:22:24s. Time for last 1,000,000: 3s. Last read position: chrM:11,176
INFO 2026-06-08 09:17:03 MarkDuplicates Tracking 3372 as yet unmatched pairs. 83 records in RAM.
INFO 2026-06-08 09:17:05 MarkDuplicates Read 625,000,000 records. Elapsed time: 00:22:26s. Time for last 1,000,000: 1s. Last read position: KI270733.1:133,733
INFO 2026-06-08 09:17:05 MarkDuplicates Tracking 242 as yet unmatched pairs. 189 records in RAM.
INFO 2026-06-08 09:17:05 MarkDuplicates Read 625360443 records. 0 pairs never matched.
INFO 2026-06-08 09:18:01 MarkDuplicates After buildSortedReadEndLists freeMemory: 204139952; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:18:01 MarkDuplicates Will retain up to 1987051520 duplicate indices before spilling to disk.
INFO 2026-06-08 09:18:03 MarkDuplicates Traversing read pair information and detecting duplicates.
WARNING 2026-06-08 09:18:04 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 09:18:30 OpticalDuplicateFinder Large duplicate set. size = 1122
INFO 2026-06-08 09:18:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,709
INFO 2026-06-08 09:18:30 OpticalDuplicateFinder Large duplicate set. size = 1528
INFO 2026-06-08 09:18:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,497
INFO 2026-06-08 09:18:30 OpticalDuplicateFinder Large duplicate set. size = 1275
INFO 2026-06-08 09:18:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,656
INFO 2026-06-08 09:18:30 OpticalDuplicateFinder Large duplicate set. size = 1067
INFO 2026-06-08 09:18:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,951
INFO 2026-06-08 09:18:30 OpticalDuplicateFinder Large duplicate set. size = 1141
INFO 2026-06-08 09:18:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,489
INFO 2026-06-08 09:18:30 OpticalDuplicateFinder Large duplicate set. size = 1021
INFO 2026-06-08 09:18:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,337
INFO 2026-06-08 09:18:30 OpticalDuplicateFinder Large duplicate set. size = 1020
INFO 2026-06-08 09:18:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,542
INFO 2026-06-08 09:18:30 OpticalDuplicateFinder Large duplicate set. size = 1060
INFO 2026-06-08 09:18:30 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,642
INFO 2026-06-08 09:18:31 OpticalDuplicateFinder Large duplicate set. size = 1276
INFO 2026-06-08 09:18:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,672
INFO 2026-06-08 09:18:31 OpticalDuplicateFinder Large duplicate set. size = 1848
INFO 2026-06-08 09:18:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,031
INFO 2026-06-08 09:18:31 OpticalDuplicateFinder Large duplicate set. size = 1183
INFO 2026-06-08 09:18:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,244
INFO 2026-06-08 09:18:31 OpticalDuplicateFinder Large duplicate set. size = 1697
INFO 2026-06-08 09:18:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,873
INFO 2026-06-08 09:18:31 OpticalDuplicateFinder Large duplicate set. size = 1325
INFO 2026-06-08 09:18:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,535
INFO 2026-06-08 09:18:31 OpticalDuplicateFinder Large duplicate set. size = 1191
INFO 2026-06-08 09:18:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,405
INFO 2026-06-08 09:18:31 OpticalDuplicateFinder Large duplicate set. size = 2566
INFO 2026-06-08 09:18:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,435
INFO 2026-06-08 09:18:31 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,020
INFO 2026-06-08 09:18:31 OpticalDuplicateFinder Large duplicate set. size = 1752
INFO 2026-06-08 09:18:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,533
INFO 2026-06-08 09:18:31 OpticalDuplicateFinder Large duplicate set. size = 1178
INFO 2026-06-08 09:18:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,291
INFO 2026-06-08 09:18:31 OpticalDuplicateFinder Large duplicate set. size = 1059
INFO 2026-06-08 09:18:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,508
INFO 2026-06-08 09:18:37 OpticalDuplicateFinder Large duplicate set. size = 1029
INFO 2026-06-08 09:18:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,582
INFO 2026-06-08 09:18:37 OpticalDuplicateFinder Large duplicate set. size = 1116
INFO 2026-06-08 09:18:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,433
INFO 2026-06-08 09:18:37 OpticalDuplicateFinder Large duplicate set. size = 1008
INFO 2026-06-08 09:18:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,276
INFO 2026-06-08 09:18:37 OpticalDuplicateFinder Large duplicate set. size = 1929
INFO 2026-06-08 09:18:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,654
INFO 2026-06-08 09:18:37 OpticalDuplicateFinder Large duplicate set. size = 1356
INFO 2026-06-08 09:18:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,835
INFO 2026-06-08 09:18:37 OpticalDuplicateFinder Large duplicate set. size = 3466
INFO 2026-06-08 09:18:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,849
INFO 2026-06-08 09:18:37 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,174
INFO 2026-06-08 09:18:37 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,867
INFO 2026-06-08 09:18:37 OpticalDuplicateFinder Large duplicate set. size = 1454
INFO 2026-06-08 09:18:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,959
INFO 2026-06-08 09:18:37 OpticalDuplicateFinder Large duplicate set. size = 1764
INFO 2026-06-08 09:18:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,477
INFO 2026-06-08 09:18:37 OpticalDuplicateFinder Large duplicate set. size = 2059
INFO 2026-06-08 09:18:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,980
INFO 2026-06-08 09:18:37 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,704
INFO 2026-06-08 09:18:37 OpticalDuplicateFinder Large duplicate set. size = 1536
INFO 2026-06-08 09:18:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,698
INFO 2026-06-08 09:18:37 OpticalDuplicateFinder Large duplicate set. size = 1124
INFO 2026-06-08 09:18:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,867
INFO 2026-06-08 09:18:37 OpticalDuplicateFinder Large duplicate set. size = 1510
INFO 2026-06-08 09:18:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,865
INFO 2026-06-08 09:18:37 OpticalDuplicateFinder Large duplicate set. size = 1057
INFO 2026-06-08 09:18:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,810
INFO 2026-06-08 09:18:37 OpticalDuplicateFinder Large duplicate set. size = 1396
INFO 2026-06-08 09:18:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,914
INFO 2026-06-08 09:18:38 OpticalDuplicateFinder Large duplicate set. size = 1070
INFO 2026-06-08 09:18:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,643
INFO 2026-06-08 09:19:01 OpticalDuplicateFinder Large duplicate set. size = 1611
INFO 2026-06-08 09:19:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,909
INFO 2026-06-08 09:19:47 OpticalDuplicateFinder Large duplicate set. size = 1204
INFO 2026-06-08 09:19:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,932
INFO 2026-06-08 09:19:48 OpticalDuplicateFinder Large duplicate set. size = 1028
INFO 2026-06-08 09:19:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,340
INFO 2026-06-08 09:19:48 OpticalDuplicateFinder Large duplicate set. size = 1018
INFO 2026-06-08 09:19:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,833
INFO 2026-06-08 09:19:48 OpticalDuplicateFinder Large duplicate set. size = 1089
INFO 2026-06-08 09:19:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,498
INFO 2026-06-08 09:19:49 OpticalDuplicateFinder Large duplicate set. size = 1025
INFO 2026-06-08 09:19:49 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,833
INFO 2026-06-08 09:19:49 OpticalDuplicateFinder Large duplicate set. size = 1152
INFO 2026-06-08 09:19:49 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,626
INFO 2026-06-08 09:20:06 MarkDuplicates Traversing fragment information and detecting duplicates.
WARNING 2026-06-08 09:20:06 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 09:21:22 MarkDuplicates Sorting list of duplicate records.
INFO 2026-06-08 09:21:29 MarkDuplicates After generateDuplicateIndexes freeMemory: 203946536; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:21:29 MarkDuplicates Marking 377436112 records as duplicates.
INFO 2026-06-08 09:21:29 MarkDuplicates Found 19038268 optical duplicate clusters.
INFO 2026-06-08 09:21:29 MarkDuplicates Reads are assumed to be ordered by: coordinate
INFO 2026-06-08 09:21:46 MarkDuplicates Written 10,000,000 records. Elapsed time: 00:00:17s. Time for last 10,000,000: 17s. Last read position: chr1:23,695,841
INFO 2026-06-08 09:22:03 MarkDuplicates Written 20,000,000 records. Elapsed time: 00:00:33s. Time for last 10,000,000: 16s. Last read position: chr1:52,027,320
INFO 2026-06-08 09:22:20 MarkDuplicates Written 30,000,000 records. Elapsed time: 00:00:50s. Time for last 10,000,000: 16s. Last read position: chr1:146,164,854
INFO 2026-06-08 09:22:36 MarkDuplicates Written 40,000,000 records. Elapsed time: 00:01:07s. Time for last 10,000,000: 16s. Last read position: chr1:155,659,663
INFO 2026-06-08 09:22:53 MarkDuplicates Written 50,000,000 records. Elapsed time: 00:01:24s. Time for last 10,000,000: 17s. Last read position: chr1:186,347,355
INFO 2026-06-08 09:23:16 MarkDuplicates Written 60,000,000 records. Elapsed time: 00:01:47s. Time for last 10,000,000: 22s. Last read position: chr1:228,402,097
INFO 2026-06-08 09:23:34 MarkDuplicates Written 70,000,000 records. Elapsed time: 00:02:05s. Time for last 10,000,000: 18s. Last read position: chr2:32,916,404
INFO 2026-06-08 09:23:51 MarkDuplicates Written 80,000,000 records. Elapsed time: 00:02:22s. Time for last 10,000,000: 16s. Last read position: chr2:85,662,084
INFO 2026-06-08 09:24:08 MarkDuplicates Written 90,000,000 records. Elapsed time: 00:02:39s. Time for last 10,000,000: 17s. Last read position: chr2:171,517,626
INFO 2026-06-08 09:24:26 MarkDuplicates Written 100,000,000 records. Elapsed time: 00:02:57s. Time for last 10,000,000: 17s. Last read position: chr2:215,386,689
INFO 2026-06-08 09:24:45 MarkDuplicates Written 110,000,000 records. Elapsed time: 00:03:16s. Time for last 10,000,000: 19s. Last read position: chr2:240,573,175
INFO 2026-06-08 09:25:04 MarkDuplicates Written 120,000,000 records. Elapsed time: 00:03:35s. Time for last 10,000,000: 19s. Last read position: chr3:49,426,279
INFO 2026-06-08 09:25:24 MarkDuplicates Written 130,000,000 records. Elapsed time: 00:03:55s. Time for last 10,000,000: 19s. Last read position: chr3:129,575,541
INFO 2026-06-08 09:25:41 MarkDuplicates Written 140,000,000 records. Elapsed time: 00:04:12s. Time for last 10,000,000: 17s. Last read position: chr4:337,986
INFO 2026-06-08 09:25:58 MarkDuplicates Written 150,000,000 records. Elapsed time: 00:04:29s. Time for last 10,000,000: 16s. Last read position: chr4:25,676,218
INFO 2026-06-08 09:26:15 MarkDuplicates Written 160,000,000 records. Elapsed time: 00:04:45s. Time for last 10,000,000: 16s. Last read position: chr4:117,062,337
INFO 2026-06-08 09:26:33 MarkDuplicates Written 170,000,000 records. Elapsed time: 00:05:04s. Time for last 10,000,000: 18s. Last read position: chr5:38,932,876
INFO 2026-06-08 09:26:52 MarkDuplicates Written 180,000,000 records. Elapsed time: 00:05:23s. Time for last 10,000,000: 19s. Last read position: chr5:132,752,165
INFO 2026-06-08 09:27:09 MarkDuplicates Written 190,000,000 records. Elapsed time: 00:05:40s. Time for last 10,000,000: 17s. Last read position: chr5:150,404,746
INFO 2026-06-08 09:27:28 MarkDuplicates Written 200,000,000 records. Elapsed time: 00:05:59s. Time for last 10,000,000: 18s. Last read position: chr5:179,559,830
INFO 2026-06-08 09:27:45 MarkDuplicates Written 210,000,000 records. Elapsed time: 00:06:16s. Time for last 10,000,000: 17s. Last read position: chr6:31,355,431
INFO 2026-06-08 09:28:02 MarkDuplicates Written 220,000,000 records. Elapsed time: 00:06:33s. Time for last 10,000,000: 16s. Last read position: chr6:43,516,082
INFO 2026-06-08 09:28:19 MarkDuplicates Written 230,000,000 records. Elapsed time: 00:06:50s. Time for last 10,000,000: 16s. Last read position: chr6:159,682,347
INFO 2026-06-08 09:28:35 MarkDuplicates Written 240,000,000 records. Elapsed time: 00:07:06s. Time for last 10,000,000: 16s. Last read position: chr7:55,156,822
INFO 2026-06-08 09:28:52 MarkDuplicates Written 250,000,000 records. Elapsed time: 00:07:23s. Time for last 10,000,000: 16s. Last read position: chr7:102,538,511
INFO 2026-06-08 09:29:11 MarkDuplicates Written 260,000,000 records. Elapsed time: 00:07:42s. Time for last 10,000,000: 18s. Last read position: chr8:16,155,133
INFO 2026-06-08 09:29:28 MarkDuplicates Written 270,000,000 records. Elapsed time: 00:07:59s. Time for last 10,000,000: 17s. Last read position: chr8:80,558,825
INFO 2026-06-08 09:29:45 MarkDuplicates Written 280,000,000 records. Elapsed time: 00:08:16s. Time for last 10,000,000: 16s. Last read position: chr8:144,317,813
INFO 2026-06-08 09:30:02 MarkDuplicates Written 290,000,000 records. Elapsed time: 00:08:32s. Time for last 10,000,000: 16s. Last read position: chr9:112,227,476
INFO 2026-06-08 09:30:18 MarkDuplicates Written 300,000,000 records. Elapsed time: 00:08:49s. Time for last 10,000,000: 16s. Last read position: chr9:137,040,580
INFO 2026-06-08 09:30:35 MarkDuplicates Written 310,000,000 records. Elapsed time: 00:09:06s. Time for last 10,000,000: 16s. Last read position: chr10:74,525,349
INFO 2026-06-08 09:30:52 MarkDuplicates Written 320,000,000 records. Elapsed time: 00:09:23s. Time for last 10,000,000: 16s. Last read position: chr10:122,603,114
INFO 2026-06-08 09:31:08 MarkDuplicates Written 330,000,000 records. Elapsed time: 00:09:39s. Time for last 10,000,000: 16s. Last read position: chr11:1,246,883
INFO 2026-06-08 09:31:25 MarkDuplicates Written 340,000,000 records. Elapsed time: 00:09:56s. Time for last 10,000,000: 16s. Last read position: chr11:17,074,437
INFO 2026-06-08 09:31:41 MarkDuplicates Written 350,000,000 records. Elapsed time: 00:10:12s. Time for last 10,000,000: 16s. Last read position: chr11:62,787,415
INFO 2026-06-08 09:31:58 MarkDuplicates Written 360,000,000 records. Elapsed time: 00:10:29s. Time for last 10,000,000: 16s. Last read position: chr11:74,250,931
INFO 2026-06-08 09:32:15 MarkDuplicates Written 370,000,000 records. Elapsed time: 00:10:46s. Time for last 10,000,000: 16s. Last read position: chr11:134,288,808
INFO 2026-06-08 09:32:32 MarkDuplicates Written 380,000,000 records. Elapsed time: 00:11:03s. Time for last 10,000,000: 16s. Last read position: chr12:40,367,668
INFO 2026-06-08 09:32:49 MarkDuplicates Written 390,000,000 records. Elapsed time: 00:11:19s. Time for last 10,000,000: 16s. Last read position: chr12:57,091,193
INFO 2026-06-08 09:33:05 MarkDuplicates Written 400,000,000 records. Elapsed time: 00:11:36s. Time for last 10,000,000: 16s. Last read position: chr12:111,799,931
INFO 2026-06-08 09:33:22 MarkDuplicates Written 410,000,000 records. Elapsed time: 00:11:53s. Time for last 10,000,000: 16s. Last read position: chr13:48,233,375
INFO 2026-06-08 09:33:39 MarkDuplicates Written 420,000,000 records. Elapsed time: 00:12:10s. Time for last 10,000,000: 16s. Last read position: chr14:49,780,744
INFO 2026-06-08 09:33:56 MarkDuplicates Written 430,000,000 records. Elapsed time: 00:12:27s. Time for last 10,000,000: 16s. Last read position: chr14:102,050,434
INFO 2026-06-08 09:34:13 MarkDuplicates Written 440,000,000 records. Elapsed time: 00:12:44s. Time for last 10,000,000: 17s. Last read position: chr15:57,618,146
INFO 2026-06-08 09:34:30 MarkDuplicates Written 450,000,000 records. Elapsed time: 00:13:01s. Time for last 10,000,000: 16s. Last read position: chr15:101,972,566
INFO 2026-06-08 09:34:47 MarkDuplicates Written 460,000,000 records. Elapsed time: 00:13:18s. Time for last 10,000,000: 16s. Last read position: chr16:19,115,285
INFO 2026-06-08 09:35:03 MarkDuplicates Written 470,000,000 records. Elapsed time: 00:13:34s. Time for last 10,000,000: 16s. Last read position: chr16:57,081,164
INFO 2026-06-08 09:35:21 MarkDuplicates Written 480,000,000 records. Elapsed time: 00:13:52s. Time for last 10,000,000: 17s. Last read position: chr17:1,844,525
INFO 2026-06-08 09:35:38 MarkDuplicates Written 490,000,000 records. Elapsed time: 00:14:09s. Time for last 10,000,000: 17s. Last read position: chr17:30,422,884
INFO 2026-06-08 09:35:57 MarkDuplicates Written 500,000,000 records. Elapsed time: 00:14:28s. Time for last 10,000,000: 19s. Last read position: chr17:50,167,607
INFO 2026-06-08 09:36:18 MarkDuplicates Written 510,000,000 records. Elapsed time: 00:14:49s. Time for last 10,000,000: 20s. Last read position: chr17:50,195,659
INFO 2026-06-08 09:36:38 MarkDuplicates Written 520,000,000 records. Elapsed time: 00:15:09s. Time for last 10,000,000: 19s. Last read position: chr17:75,238,348
INFO 2026-06-08 09:36:57 MarkDuplicates Written 530,000,000 records. Elapsed time: 00:15:28s. Time for last 10,000,000: 18s. Last read position: chr18:49,490,825
INFO 2026-06-08 09:37:15 MarkDuplicates Written 540,000,000 records. Elapsed time: 00:15:46s. Time for last 10,000,000: 18s. Last read position: chr19:7,621,144
INFO 2026-06-08 09:37:35 MarkDuplicates Written 550,000,000 records. Elapsed time: 00:16:06s. Time for last 10,000,000: 19s. Last read position: chr19:18,280,449
INFO 2026-06-08 09:37:55 MarkDuplicates Written 560,000,000 records. Elapsed time: 00:16:25s. Time for last 10,000,000: 19s. Last read position: chr19:42,291,493
INFO 2026-06-08 09:38:16 MarkDuplicates Written 570,000,000 records. Elapsed time: 00:16:47s. Time for last 10,000,000: 21s. Last read position: chr19:55,386,416
INFO 2026-06-08 09:38:39 MarkDuplicates Written 580,000,000 records. Elapsed time: 00:17:09s. Time for last 10,000,000: 22s. Last read position: chr20:45,945,825
INFO 2026-06-08 09:39:00 MarkDuplicates Written 590,000,000 records. Elapsed time: 00:17:31s. Time for last 10,000,000: 21s. Last read position: chr21:44,324,638
INFO 2026-06-08 09:39:17 MarkDuplicates Written 600,000,000 records. Elapsed time: 00:17:48s. Time for last 10,000,000: 17s. Last read position: chr22:37,677,026
INFO 2026-06-08 09:39:38 MarkDuplicates Written 610,000,000 records. Elapsed time: 00:18:09s. Time for last 10,000,000: 20s. Last read position: chrX:47,585,203
INFO 2026-06-08 09:39:59 MarkDuplicates Written 620,000,000 records. Elapsed time: 00:18:29s. Time for last 10,000,000: 20s. Last read position: chrX:153,504,814
INFO 2026-06-08 09:40:19 MarkDuplicates Writing complete. Closing input iterator.
INFO 2026-06-08 09:40:19 MarkDuplicates Duplicate Index cleanup.
INFO 2026-06-08 09:40:19 MarkDuplicates Getting Memory Stats.
INFO 2026-06-08 09:40:19 MarkDuplicates Before output close freeMemory: 203892360; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:40:19 MarkDuplicates Closed outputs. Getting more Memory Stats.
INFO 2026-06-08 09:40:19 MarkDuplicates After output close freeMemory: 104147656; totalMemory: 134217728; maxMemory: 63585648640
[Mon Jun 08 09:40:19 GMT 2026] picard.sam.markduplicates.MarkDuplicates done. Elapsed time: 45.71 minutes.
Runtime.totalMemory()=134217728
ls: *cram: No such file or directory
ls: *.crai: No such file or directory