[W::hts_idx_load3] The index file is older than the data file: 659_6i-T1-TRNA-1_A23MVY2LT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	188867388
Known Splicing Events:	186771625
Partial Novel Splicing Events:	1068719
Novel Splicing Events:	922222
Filtered Splicing Events:	104822

Total splicing  Junctions:	432064
Known Splicing Junctions:	244092
Partial Novel Splicing Junctions:	98216
Novel Splicing Junctions:	89756

===================================================================
Create BED file ...
Create Interact file ...