Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1a/f73a0e22861201cc7c5cccf07ed1b4/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7b/82e2dd3ca4008850985102f078600d/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7b/82e2dd3ca4008850985102f078600d/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/80/94f87efce0c9ea1070184b2035b932/659_6i-T1-TRNA-1_A23MVY2LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5c/0a873d9884b3f2d94f5fca36ab3aa5/659_6i-T1-TRNA-1_A23MVY2LT4_1.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 188867388
[W::hts_idx_load3] The index file is older than the data file: 659_6i-T1-TRNA-1_A23MVY2LT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	188867388
Known Splicing Events:	186771625
Partial Novel Splicing Events:	1068719
Novel Splicing Events:	922222
Filtered Splicing Events:	104822

Total splicing  Junctions:	432064
Known Splicing Junctions:	244092
Partial Novel Splicing Junctions:	98216
Novel Splicing Junctions:	89756

===================================================================
Create BED file ...
Create Interact file ...