[W::hts_idx_load3] The index file is older than the data file: 659_bGc-T1-TRNA-1_A23MVY2LT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	333438442
Known Splicing Events:	329762656
Partial Novel Splicing Events:	1941560
Novel Splicing Events:	1590053
Filtered Splicing Events:	144173

Total splicing  Junctions:	571385
Known Splicing Junctions:	274330
Partial Novel Splicing Junctions:	156292
Novel Splicing Junctions:	140763

===================================================================
Create BED file ...
Create Interact file ...